Citrus Sinensis ID: 018989

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
ccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEcccccccccccEEEcEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccc
ccccccccccHHHHHHHHccccccHHcEcccccccccccccccccccEEEcHcccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEcccEccHHHEEEEEEcccHcccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEccccccccccEccccccccccEEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHccccccccccccccHHHHHHHHHHccHHHHHHHcc
MDMAKATSVSKTIEQMVthseqpssgfivketkfgsiesspplgpfpvidmslfssqehVGTELEKLKSslssagcfqvvghgmsdsFLDRVREVAVEFFQLPAEEKQKHARAVNEIegygsdlvvsdaqvfDWCHRLFLRVFpvhrrrlnlwpqhppEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRfnfyppcsrpdlvhgvkphtdrsgitillqdreveglqirvdgkwyrvpviphalvvnlgdqMQIMtngiykspmhrvvtNTEKLRISIAaftepepeneigpvdqlideqrpklyRNVRNYGAINYECYQKGLVALDTVRA
mdmakatsvsktieqmvthseqpssgfIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFfqlpaeekqkHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSgitillqdrevEGLQIrvdgkwyrvPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAaftepepeneigpvdqlideqRPKLYRNVRNYGAINYECYQKGLVALDTVRA
MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTeleklksslssAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
***********************************************VIDM*********************SAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFT**********VDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALD****
*************************GFIVK**************PFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQK**RA*NEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
*************EQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
********VSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
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MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops no no 0.864 0.840 0.384 6e-59
D4N502360 Codeine O-demethylase OS= N/A no 0.804 0.777 0.407 6e-58
D4N501364 Probable 2-oxoglutarate/F N/A no 0.864 0.826 0.383 2e-57
D4N500364 Thebaine 6-O-demethylase N/A no 0.867 0.829 0.368 1e-54
Q9M547334 Flavonol synthase/flavano N/A no 0.787 0.820 0.402 3e-53
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.795 0.821 0.381 5e-52
A2A1A0352 S-norcoclaurine synthase N/A no 0.810 0.801 0.374 3e-50
P51091357 Leucoanthocyanidin dioxyg N/A no 0.798 0.778 0.369 2e-49
Q07512348 Flavonol synthase/flavano N/A no 0.721 0.721 0.386 2e-49
Q41452349 Flavonol synthase/flavano N/A no 0.775 0.773 0.357 4e-47
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  228 bits (580), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 181/304 (59%), Gaps = 3/304 (0%)

Query: 47  PVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEE 106
           P+IDM    S   + +E+EKL  +    G FQ+V HG+  SFLD+V+    +FF LP EE
Sbjct: 54  PIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEE 113

Query: 107 KQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNE 166
           K+K  +  +EIEG+G   VVS+ Q  DW    F  V PV  R+ +L+P+ P  F + L  
Sbjct: 114 KKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEM 173

Query: 167 YAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGD-QALMQVRFNFYPPCSRPDLVHGVKPH 225
           Y+ ++++V ++L   +A++L ++       F D  ++  +R N+YPPC +PD V G+ PH
Sbjct: 174 YSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPH 233

Query: 226 TDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVV 285
           +D  G+T+L+Q  +VEGLQI+ DGKW  V  +P+A +VN+GD ++I+TNG Y+S  HR V
Sbjct: 234 SDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGV 293

Query: 286 TNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYR--NVRNYGAINYECYQKGLVAL 343
            N+EK R+SIA F       E+GP   L++ Q+   ++   ++ Y    +     G   L
Sbjct: 294 VNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYL 353

Query: 344 DTVR 347
           D +R
Sbjct: 354 DALR 357

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
343887269348 flavonol synthase/flavanone 3-hydroxylas 1.0 1.0 0.985 0.0
255585999354 Flavonol synthase/flavanone 3-hydroxylas 0.982 0.966 0.650 1e-131
357478365351 Flavonol synthase/flavanone 3-hydroxylas 0.956 0.948 0.640 1e-131
217073944351 unknown [Medicago truncatula] 0.956 0.948 0.637 1e-129
388503360351 unknown [Medicago truncatula] 0.956 0.948 0.632 1e-127
363807253351 uncharacterized protein LOC100793145 [Gl 0.968 0.960 0.634 1e-127
225446207356 PREDICTED: protein SRG1 [Vitis vinifera] 0.974 0.952 0.586 1e-119
147784777357 hypothetical protein VITISV_001365 [Viti 0.974 0.949 0.590 1e-118
359484721351 PREDICTED: LOW QUALITY PROTEIN: protein 0.974 0.965 0.585 1e-117
388511034356 unknown [Lotus japonicus] 0.979 0.957 0.564 1e-116
>gi|343887269|dbj|BAK61815.1| flavonol synthase/flavanone 3-hydroxylase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/348 (98%), Positives = 345/348 (99%)

Query: 1   MDMAKATSVSKTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV 60
           MDMAKA SVSKTIEQ+VTH EQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV
Sbjct: 1   MDMAKAISVSKTIEQLVTHGEQPSSGFIVKETKFGSIESSPPLGPFPVIDMSLFSSQEHV 60

Query: 61  GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGY 120
           GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGY
Sbjct: 61  GTELEKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGY 120

Query: 121 GSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSK 180
           GSDLVVSDAQVFDWCHRLFLRVFPVH+RRLNLWPQHPPEFSEILNEYAMKL TVTEVLSK
Sbjct: 121 GSDLVVSDAQVFDWCHRLFLRVFPVHQRRLNLWPQHPPEFSEILNEYAMKLTTVTEVLSK 180

Query: 181 AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV 240
           AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV
Sbjct: 181 AIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREV 240

Query: 241 EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE 300
           EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE
Sbjct: 241 EGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTE 300

Query: 301 PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA 348
           PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA
Sbjct: 301 PEPENEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKGLVALDTVRA 348

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585999|ref|XP_002533669.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223526437|gb|EEF28715.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357478365|ref|XP_003609468.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355510523|gb|AES91665.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073944|gb|ACJ85332.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388503360|gb|AFK39746.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807253|ref|NP_001242103.1| uncharacterized protein LOC100793145 [Glycine max] gi|255639064|gb|ACU19832.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225446207|ref|XP_002263617.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|147790901|emb|CAN77231.1| hypothetical protein VITISV_002774 [Vitis vinifera] gi|296084536|emb|CBI25557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784777|emb|CAN68790.1| hypothetical protein VITISV_001365 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484721|ref|XP_003633149.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388511034|gb|AFK43583.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.939 0.939 0.471 7.6e-80
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.945 0.945 0.450 7.6e-80
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.945 0.942 0.440 1.1e-73
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.939 0.936 0.416 2.2e-73
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.893 0.861 0.370 2.3e-55
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.864 0.845 0.389 2.1e-54
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.818 0.782 0.405 4.3e-54
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.902 0.889 0.371 8.9e-54
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.864 0.840 0.371 6.3e-53
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.721 0.711 0.411 8e-53
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 158/335 (47%), Positives = 215/335 (64%)

Query:    11 KTIEQMVTHSEQPSSGFIVKETKFGSIESSPPLG--P---FPVIDMSL-FSSQEHVGTXX 64
             KT++++V   +     ++   T  G  ES P  G  P    P ID+SL FSS        
Sbjct:     7 KTVQEVVAAGQGLPERYLHAPT--GEGESQPLNGAVPEMDIPAIDLSLLFSSSVDGQEEM 64

Query:    65 XXXXXXXXXAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDL 124
                       G  QV+ HG++++FLD++ ++  +FF LP EEK K AR    I+GYG+D+
Sbjct:    65 KKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKHKCARETGNIQGYGNDM 124

Query:   125 VVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
             ++SD QV DW  RLFL  +P  +R+L  WPQ P  FSE L+EY MK + + E   KA+A+
Sbjct:   125 ILSDNQVLDWIDRLFLTTYPEDKRQLKFWPQVPVGFSETLDEYTMKQRVLIEKFFKAMAR 184

Query:   185 SLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQ 244
             SL LEE  FL  +G+ A+M  RFNF+PPC RPD V G+KPH D S IT+LL D++VEGLQ
Sbjct:   185 SLELEENCFLEMYGENAVMNSRFNFFPPCPRPDKVIGIKPHADGSAITLLLPDKDVEGLQ 244

Query:   245 IRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPE 304
                DGKWY+ P++P  +++ LGDQM+IM+NGIYKSP+HRVVTN EK RIS+A F  P  +
Sbjct:   245 FLKDGKWYKAPIVPDTILITLGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCVPGLD 304

Query:   305 NEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKG 339
              EI P D L+ E RP+LY+ V  Y  ++Y+ YQ+G
Sbjct:   305 KEIHPADGLVTEARPRLYKTVTKYVDLHYKYYQQG 339
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-121
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-86
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-85
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-82
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-75
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-65
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 7e-64
PLN02947374 PLN02947, PLN02947, oxidoreductase 9e-58
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-57
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 9e-54
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-53
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-51
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-49
PLN02904357 PLN02904, PLN02904, oxidoreductase 4e-49
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 7e-48
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-45
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-44
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-38
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-38
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-38
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-37
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-34
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-32
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-29
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-26
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-24
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 5e-17
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-121
 Identities = 163/335 (48%), Positives = 222/335 (66%), Gaps = 8/335 (2%)

Query: 11  KTIEQMVTHSEQPSSGFIVKETKFGSIESSP-----PLGPFPVIDMSL-FSSQEHVGTEL 64
           KT++++V   E     ++   T  G  E  P     P    P ID+SL  SS +    EL
Sbjct: 7   KTVQEVVAAGEGLPERYLHTPT--GDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREEL 64

Query: 65  EKLKSSLSSAGCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDL 124
            KL S+LS+ G  QV+ HG++++FLD++ ++  +FF LP EEKQK AR +  I+GYG+D+
Sbjct: 65  SKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDM 124

Query: 125 VVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAK 184
           ++SD QV DW  RL+L  +P  +R+L  WPQ P  F E L+EY MK + V E   KA+A+
Sbjct: 125 ILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMAR 184

Query: 185 SLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQ 244
           SL LEE  FL  +G+ A M  RFN YPPC RPD V GVKPH D S  T+LL D++VEGLQ
Sbjct: 185 SLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQ 244

Query: 245 IRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPE 304
              DGKWY+ P++P  +++N+GDQM+IM+NGIYKSP+HRVVTN EK RIS+A F  P  +
Sbjct: 245 FLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIPGAD 304

Query: 305 NEIGPVDQLIDEQRPKLYRNVRNYGAINYECYQKG 339
            EI PVD L+ E RP+LY+ V+ Y  + ++ YQ+G
Sbjct: 305 KEIQPVDGLVSEARPRLYKTVKKYVELFFKYYQQG 339

Length = 348
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.85
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.38
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.81
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.43
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.32
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 92.09
TIGR02466201 conserved hypothetical protein. This family consis 85.42
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=4.1e-81  Score=597.50  Aligned_cols=338  Identities=38%  Similarity=0.660  Sum_probs=302.6

Q ss_pred             hhHHHHHh--CCCCCCCCcccCcCcCCCCC-CCCCCCCCceeeCCCCCCCChHHHHHHHHHHHHHccceEEEEcCCCCHH
Q 018989           11 KTIEQMVT--HSEQPSSGFIVKETKFGSIE-SSPPLGPFPVIDMSLFSSQEHVGTELEKLKSSLSSAGCFQVVGHGMSDS   87 (348)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~iPvIDl~~l~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~   87 (348)
                      ..||.|+.  |++.||++|++|++..+... ++.....||+|||+.+.+++.+.+++++|.+||++||||||+||||+.+
T Consensus        15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~   94 (357)
T PLN02216         15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSS   94 (357)
T ss_pred             hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHH
Confidence            44899985  78999999999999876432 1122348999999999876544578999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHhhhccCCCccCcccCcccCCCccccccccccccccCcccccCCCCCCCCchHHHHHHHH
Q 018989           88 FLDRVREVAVEFFQLPAEEKQKHARAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEY  167 (348)
Q Consensus        88 ~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~f~~~~~~y  167 (348)
                      +++++++.+++||+||.|+|+++...++.++||+........+..||+|.|.+...|...+.+|.||+.+++|++.+++|
T Consensus        95 li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y  174 (357)
T PLN02216         95 FLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETY  174 (357)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHH
Confidence            99999999999999999999998765556789976544344556799999987766655567899999899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCChhhHHhHhcCCCceeEEeeecCCCCCCCCcccccCccCCCceEEEecCCCCCceEEee
Q 018989          168 AMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGDQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRV  247 (348)
Q Consensus       168 ~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd~~~~GLqV~~  247 (348)
                      ++.|.+++.+||++|+++||+++++|.+.+.....+.||++|||||+.++..+|+++|||+|+||||+|+++++||||++
T Consensus       175 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~  254 (357)
T PLN02216        175 SAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKK  254 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEE
Confidence            99999999999999999999999999998854355789999999999888889999999999999999953699999999


Q ss_pred             CCeeEEecCCCCeEEEEcCchhhhhhcCcccCCCccCCCCCCCCceEEEEeeCCCCCceEecCccccCCCCCCCCCchh-
Q 018989          248 DGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEIGPVDQLIDEQRPKLYRNVR-  326 (348)
Q Consensus       248 ~g~W~~V~p~~g~~vVnvGd~l~~~TnG~~~st~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~~p~~y~~~~-  326 (348)
                      +|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++|||++||++|+.|++|.|+++|+++++|++|++++ 
T Consensus       255 ~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~  334 (357)
T PLN02216        255 DGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTT  334 (357)
T ss_pred             CCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCH
Confidence            9999999999999999999999999999999999999988888999999999999999999999999999999999999 


Q ss_pred             -HHHHHHHHhhccCCcchhhhcC
Q 018989          327 -NYGAINYECYQKGLVALDTVRA  348 (348)
Q Consensus       327 -e~~~~~~~~~~~~~~~l~~~~~  348 (348)
                       ||++.++.+...++..|+.||+
T Consensus       335 ~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        335 KEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHHHHHHhcccCCcchhhhhcC
Confidence             9999999999999999999986

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-44
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-44
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-43
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-35
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-12
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 9e-09
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 9e-08
1e5i_A306 Delta-R306 Deacetoxycephalosporin C Synthase Comple 5e-07
1e5h_A308 Delta-R307a Deacetoxycephalosporin C Synthase Compl 6e-07
1hjf_A311 Alteration Of The Co-Substrate Selectivity Of Deace 6e-07
1unb_A311 Deacetoxycephalosporin C Synthase Complexed With 2- 9e-07
1w28_A331 Conformational Flexibility Of The C-Terminus With I 1e-06
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 153/251 (60%), Gaps = 8/251 (3%)
Query: 75  GCFQVVGHGMSDSFLDRVREVAVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVF 132
           G   ++ HG+    ++RV++   EFF L  EEK+K+A  +A  +I+GYGS L  + +   
Sbjct: 77  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 133 DWCHRLFLRVFPVHRRRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYS 192
           +W    F   +P  +R L++WP+ P ++ E  +EYA  L+ +   + KA++  L LE   
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 196
Query: 193 FLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGK 250
              + G  ++ L+Q++ N+YP C +P+L  GV+ HTD S +T +L +  V GLQ+  +GK
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGK 255
Query: 251 WYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI--G 308
           W     +P ++V+++GD ++I++NG YKS +HR + N EK+RIS A F EP P+++I   
Sbjct: 256 WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLK 314
Query: 309 PVDQLIDEQRP 319
           P+ +++  + P
Sbjct: 315 PLPEMVSVESP 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed With Iron And 2-Oxoglutarate Length = 306 Back     alignment and structure
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed With Succinate And Carbon Dioxide Length = 308 Back     alignment and structure
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of Deacetoxycephalosporin C Synthase: The Role Of Arginine-258 Length = 311 Back     alignment and structure
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With 2-Oxoglutarate And Ampicillin Length = 311 Back     alignment and structure
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With Implications For Substrate Binding And Catalysis In A New Crystal Form Of Deacetoxycephalosporin C Synthase Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-131
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-128
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-81
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-73
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-69
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  377 bits (970), Expect = e-131
 Identities = 96/295 (32%), Positives = 165/295 (55%), Gaps = 8/295 (2%)

Query: 38  ESSPPLGPFPVIDMSLFSSQEHVGTE--LEKLKSSLSSAGCFQVVGHGMSDSFLDRVREV 95
           E        P ID+    S +    E  +E+LK +    G   ++ HG+    ++RV++ 
Sbjct: 39  EKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKA 98

Query: 96  AVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLW 153
             EFF L  EEK+K+A  +A  +I+GYGS L  + +   +W    F   +P  +R L++W
Sbjct: 99  GEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIW 158

Query: 154 PQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG--DQALMQVRFNFYP 211
           P+ P ++ E  +EYA  L+ +   + KA++  L LE      + G  ++ L+Q++ N+YP
Sbjct: 159 PKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 218

Query: 212 PCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQI 271
            C +P+L  GV+ HTD S +T +L +  V GLQ+  +GKW     +P ++V+++GD ++I
Sbjct: 219 KCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEI 277

Query: 272 MTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPEN-EIGPVDQLIDEQRPKLYRNV 325
           ++NG YKS +HR + N EK+RIS A F EP  +   + P+ +++  + P  +   
Sbjct: 278 LSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPR 332
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.67
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.83
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 92.02
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.41
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.57
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-79  Score=586.34  Aligned_cols=330  Identities=29%  Similarity=0.564  Sum_probs=295.7

Q ss_pred             hhHHHHHh-CCCCCCCCcccCcCcCCCCCC---CC---CCCCCceeeCCCCCCCCh--HHHHHHHHHHHHHccceEEEEc
Q 018989           11 KTIEQMVT-HSEQPSSGFIVKETKFGSIES---SP---PLGPFPVIDMSLFSSQEH--VGTELEKLKSSLSSAGCFQVVG   81 (348)
Q Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~---~~~~iPvIDl~~l~~~~~--~~~~~~~l~~A~~~~Gff~l~n   81 (348)
                      .+||.|++ |+.+||++|++|..+.+....   ..   ....||+|||+.+.++++  +.+++++|.+||+++|||||+|
T Consensus         5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n   84 (356)
T 1gp6_A            5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   84 (356)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            45899998 899999999999888765322   01   123799999999976653  3568899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCHHHHHhhhccC--CCccCcccCcccCCCccccccccccccccCcccccCCCCCCCCch
Q 018989           82 HGMSDSFLDRVREVAVEFFQLPAEEKQKHARAV--NEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPPE  159 (348)
Q Consensus        82 hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~  159 (348)
                      |||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|.|++...|.....+|.||+.+++
T Consensus        85 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~  164 (356)
T 1gp6_A           85 HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSD  164 (356)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTT
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchh
Confidence            999999999999999999999999999997744  368999987655556688999999987766544567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhhHHhHhcC--CCceeEEeeecCCCCCCCCcccccCccCCCceEEEecC
Q 018989          160 FSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFGD--QALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQD  237 (348)
Q Consensus       160 f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~qd  237 (348)
                      |++.+++|++.|.+++..||++|+++||+++++|.+.+..  .+.+.||++|||||+.++..+|+++|||+|+||||+||
T Consensus       165 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd  244 (356)
T 1gp6_A          165 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  244 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEc
Confidence            9999999999999999999999999999999999998842  46789999999999988888999999999999999999


Q ss_pred             CCCCceEEeeCCeeEEecCCCCeEEEEcCchhhhhhcCcccCCCccCCCCCCCCceEEEEeeCCCCCc-eEecCccccCC
Q 018989          238 REVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPEN-EIGPVDQLIDE  316 (348)
Q Consensus       238 ~~~~GLqV~~~g~W~~V~p~~g~~vVnvGd~l~~~TnG~~~st~HRVv~~~~~~R~Si~~F~~P~~d~-~i~pl~~~~~~  316 (348)
                       .++||||+++|+|++|+|.||++|||+||+||+||||+||||+|||++++..+|||++||++|+.|+ +|.|+++|+++
T Consensus       245 -~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~  323 (356)
T 1gp6_A          245 -MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  323 (356)
T ss_dssp             -SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             -CCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCC
Confidence             8999999999999999999999999999999999999999999999998888999999999999999 99999999999


Q ss_pred             CCCCCCCchh--HHHHHHHHhhccCCc
Q 018989          317 QRPKLYRNVR--NYGAINYECYQKGLV  341 (348)
Q Consensus       317 ~~p~~y~~~~--e~~~~~~~~~~~~~~  341 (348)
                      ++|++|++++  ||++.++.++++++.
T Consensus       324 ~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          324 ESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             SSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             CCCccCCCccHHHHHHHHHHhccCcch
Confidence            8999999999  999999888776643
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-59
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 9e-59
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-49
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-36
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  193 bits (490), Expect = 2e-59
 Identities = 96/301 (31%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 32  TKFGSIESSPPLGPFPVIDMSLFSSQEHVGTE--LEKLKSSLSSAGCFQVVGHGMSDSFL 89
                 E        P ID+    S +    E  +E+LK +    G   ++ HG+    +
Sbjct: 32  NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLM 91

Query: 90  DRVREVAVEFFQLPAEEKQKHA--RAVNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHR 147
           +RV++   EFF L  EEK+K+A  +A  +I+GYGS L  + +   +W    F   +P  +
Sbjct: 92  ERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEK 151

Query: 148 RRLNLWPQHPPEFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG--DQALMQV 205
           R L++WP+ P ++ E  +EYA  L+ +   + KA++  L LE      + G  ++ L+Q+
Sbjct: 152 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 211

Query: 206 RFNFYPPCSRPDLVHGVKPHTDRSGITILLQDREVEGLQIRVDGKWYRVPVIPHALVVNL 265
           + N+YP C +P+L  GV+ HTD S +T +L +  V GLQ+  +GKW     +P ++V+++
Sbjct: 212 KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHI 270

Query: 266 GDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI-GPVDQLIDEQRPKLYRN 324
           GD ++I++NG YKS +HR + N EK+RIS A F EP  +  +  P+ +++  + P  +  
Sbjct: 271 GDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 330

Query: 325 V 325
            
Sbjct: 331 R 331
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.84
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 89.38
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.3e-76  Score=561.02  Aligned_cols=325  Identities=30%  Similarity=0.576  Sum_probs=286.4

Q ss_pred             chhHHHHHh-CCCCCCCCcccCcCcCCCCC------CCCCCCCCceeeCCCCCCCChH--HHHHHHHHHHHHccceEEEE
Q 018989           10 SKTIEQMVT-HSEQPSSGFIVKETKFGSIE------SSPPLGPFPVIDMSLFSSQEHV--GTELEKLKSSLSSAGCFQVV   80 (348)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~iPvIDl~~l~~~~~~--~~~~~~l~~A~~~~Gff~l~   80 (348)
                      +..||.|++ |+++||++|+||+.+.+...      .+....+||||||+.+.++++.  ++++++|.+||+++|||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            357999997 99999999999999988741      1334458999999999987753  57899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCCHHHHHhhhcc--CCCccCcccCcccCCCccccccccccccccCcccccCCCCCCCCc
Q 018989           81 GHGMSDSFLDRVREVAVEFFQLPAEEKQKHARA--VNEIEGYGSDLVVSDAQVFDWCHRLFLRVFPVHRRRLNLWPQHPP  158 (348)
Q Consensus        81 nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~~~~~Gy~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~  158 (348)
                      ||||+.++++++++++++||+||.|+|+++...  .+.+.||+........+..++.+.+.....+.....+|.||+.++
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            999999999999999999999999999998763  233556665544455556677766554444555557799999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhhHHhHhc--CCCceeEEeeecCCCCCCCCcccccCccCCCceEEEec
Q 018989          159 EFSEILNEYAMKLKTVTEVLSKAIAKSLNLEEYSFLNQFG--DQALMQVRFNFYPPCSRPDLVHGVKPHTDRSGITILLQ  236 (348)
Q Consensus       159 ~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~--~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q  236 (348)
                      .|++.+++|+++|.+++.+|+++++++||+++++|.+.+.  +...+.||++|||+++.+...+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            9999999999999999999999999999999999988764  23567899999999998888999999999999999999


Q ss_pred             CCCCCceEEeeCCeeEEecCCCCeEEEEcCchhhhhhcCcccCCCccCCCCCCCCceEEEEeeCCCCCceE-ecCccccC
Q 018989          237 DREVEGLQIRVDGKWYRVPVIPHALVVNLGDQMQIMTNGIYKSPMHRVVTNTEKLRISIAAFTEPEPENEI-GPVDQLID  315 (348)
Q Consensus       237 d~~~~GLqV~~~g~W~~V~p~~g~~vVnvGd~l~~~TnG~~~st~HRVv~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~  315 (348)
                      + .++||||+.+|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+++|++
T Consensus       243 ~-~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 N-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             C-SCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             c-CCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence            9 899999999999999999999999999999999999999999999999988999999999999999865 89999999


Q ss_pred             CCCCCCCCchh--HHHHHHHHh
Q 018989          316 EQRPKLYRNVR--NYGAINYEC  335 (348)
Q Consensus       316 ~~~p~~y~~~~--e~~~~~~~~  335 (348)
                      +++|++|++|+  ||++.++..
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999  999988754
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure