Citrus Sinensis ID: 019006


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI
ccEEEECcccccEEEEEECccccCEEEECcccccccccccEEEEccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEECccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEccccccccccEEEEEEcccccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEECccccEEEECc
MEVVTHQRENENALSTVSARPMEW*****SA***PGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI
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MEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
U5 small nuclear ribonucleoprotein 40 kDa protein Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs.probableQ5RF51
U5 small nuclear ribonucleoprotein 40 kDa protein Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs.probableQ96DI7
U5 small nuclear ribonucleoprotein 40 kDa protein Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs.probableQ2HJH6

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XZM, chain R
Confidence level:very confident
Coverage over the Query: 50-347
View the alignment between query and template
View the model in PyMOL
Template: 2GNQ, chain A
Confidence level:confident
Coverage over the Query: 24-344
View the alignment between query and template
View the model in PyMOL