Citrus Sinensis ID: 019006
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | 2.2.26 [Sep-21-2011] | |||||||
| Q2HJH6 | 358 | U5 small nuclear ribonucl | yes | no | 0.844 | 0.818 | 0.600 | 1e-121 | |
| Q96DI7 | 357 | U5 small nuclear ribonucl | yes | no | 0.844 | 0.820 | 0.600 | 1e-120 | |
| Q6PE01 | 358 | U5 small nuclear ribonucl | yes | no | 0.838 | 0.812 | 0.598 | 1e-120 | |
| Q5RF51 | 357 | U5 small nuclear ribonucl | yes | no | 0.844 | 0.820 | 0.594 | 1e-118 | |
| Q55AR8 | 355 | U5 small nuclear ribonucl | yes | no | 0.890 | 0.870 | 0.567 | 1e-106 | |
| O94620 | 340 | Pre-mRNA-splicing factor | yes | no | 0.881 | 0.9 | 0.439 | 5e-72 | |
| Q4V8C4 | 328 | WD repeat-containing prot | no | no | 0.884 | 0.935 | 0.347 | 4e-43 | |
| Q86VZ2 | 330 | WD repeat-containing prot | no | no | 0.818 | 0.860 | 0.356 | 3e-42 | |
| Q9D7H2 | 328 | WD repeat-containing prot | no | no | 0.815 | 0.862 | 0.352 | 5e-42 | |
| Q5RE95 | 330 | WD repeat-containing prot | no | no | 0.818 | 0.860 | 0.353 | 9e-42 |
| >sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 191/318 (60%), Positives = 252/318 (79%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+AP A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 40 AAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 219
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCV+I +
Sbjct: 220 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQ 279
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH
Sbjct: 280 GNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPD 339
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 340 EPIILSASSDKRLYMGEI 357
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Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Bos taurus (taxid: 9913) |
| >sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 191/318 (60%), Positives = 251/318 (78%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+ P A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 39 ATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 98
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 99 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 158
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 159 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 218
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +
Sbjct: 219 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQ 278
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH
Sbjct: 279 GNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPD 338
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 339 EPIIISASSDKRLYMGEI 356
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Homo sapiens (taxid: 9606) |
| >sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 189/316 (59%), Positives = 250/316 (79%)
Query: 32 PQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK 91
P A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GDC
Sbjct: 42 PGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCD 101
Query: 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPS 151
N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+
Sbjct: 102 NYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPA 161
Query: 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211
RRGP LV +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVW
Sbjct: 162 RRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVW 221
Query: 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
DLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +G+
Sbjct: 222 DLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGN 281
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+NE FH EP
Sbjct: 282 VHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEP 341
Query: 332 VIGSCSSDKQIYLGEI 347
+I S SSDK++Y+GEI
Sbjct: 342 IILSASSDKRLYMGEI 357
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Mus musculus (taxid: 10090) |
| >sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 250/318 (78%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+ P A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 39 ATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 98
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKG+ A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 99 CGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 158
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 159 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 218
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +
Sbjct: 219 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQ 278
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR V +WDTTSRRILYKLPGH GS+NE FH
Sbjct: 279 GNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPD 338
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 339 EPIIISASSDKRLYMGEI 356
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Pongo abelii (taxid: 9601) |
| >sp|Q55AR8|SNR40_DICDI U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/310 (56%), Positives = 229/310 (73%), Gaps = 1/310 (0%)
Query: 39 GKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG 98
G +RTS LE PIM L GH+ +Y+ KFN GT +ASG D++IFLW+V+G+C N+ VLKG
Sbjct: 44 GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV 158
HK IL+LHW+TD ++I +A DK++ WD G+ IK++ EH+ VNSCCP+RRGPPLV
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163
Query: 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
SGSDD +A+++D R +G+ F KY +T+V FSDASD++ TGGIDN ++VWD+R E
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223
Query: 219 SM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL HQD IT S+S DG+YLL+N MD IWD+RPYAP NR +K G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
NL+K WS DG ++ GSSDR VYIWDT ++++ Y LPGH+G+VNE FH EP+I SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343
Query: 338 SDKQIYLGEI 347
SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|O94620|CWF17_SCHPO Pre-mRNA-splicing factor cwf17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf17 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 190/307 (61%), Gaps = 1/307 (0%)
Query: 41 QRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
QRTS L P + + GH + V +F+P+G+ ASG DR I LW+V GD KN+ VL G K
Sbjct: 34 QRTSDLNVPNLQMFGHTAEVLVARFDPSGSYFASGGMDRQILLWNVFGDVKNYGVLNGCK 93
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVS 160
AI DL W+ D + +S D L +WD +G++I+K H VN+ + G L+ S
Sbjct: 94 GAITDLQWSRDSRVVYCSSSDTHLMSWDAVSGQKIRKHKGHAGVVNALDVLKVGSELLTS 153
Query: 161 GSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220
SDD T K+WD R + I+T +KY +TAV+ + +++ GGID +K+WDLR S
Sbjct: 154 VSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQGTQVFIGGIDGAIKIWDLRNNHCSH 213
Query: 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280
L+GH+D+IT +++S DGS LL+N MD + I+D++P+A R ++I EG H E NLL
Sbjct: 214 VLKGHKDIITSLAISKDGSSLLSNSMDNTVRIFDVKPFASAQRQLQIFEGAIHGQEHNLL 273
Query: 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340
WS + V AGSSD+ VY+W T + Y LPGH GSVN FH + +I SCSSD+
Sbjct: 274 GVAWSRNSRFVGAGSSDKNVYVWSATG-DLRYVLPGHEGSVNHVDFHPHQDIILSCSSDR 332
Query: 341 QIYLGEI 347
I+LGE+
Sbjct: 333 TIFLGEL 339
|
Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 176/334 (52%), Gaps = 27/334 (8%)
Query: 21 PMEWSTVPYSAPQ----APGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGS 76
P E + P SAPQ PN R + L GH +A+ ++KF+P G +AS +
Sbjct: 7 PAERAQSPLSAPQRVEEPQKPNYALR--------LTLAGHSAAISSVKFSPNGEWLASSA 58
Query: 77 HDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135
D I +W + G CK L GH I D+ W++D S+++SAS DKTL+ WDV +GK +
Sbjct: 59 ADALIIIWGAYDGKCKK--TLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCL 116
Query: 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSD 194
K + H+ FV CC L+VSGS D + K+W+++ ++T I+AV F
Sbjct: 117 KTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHC 175
Query: 195 ASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGMDCKLCIW 253
I +G D ++WD G+ TL + ++ + SP+G Y+LT +D L +W
Sbjct: 176 NGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLW 235
Query: 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILY 312
D + RC+K GH++ EK + +S G K V +GS D MVYIW+ ++ I+
Sbjct: 236 DYS----RGRCLKTYTGHKN--EKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQ 289
Query: 313 KLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+L GHT V + H TE +I S + +DK I +
Sbjct: 290 RLQGHTDVVISAACHPTENIIASAALENDKTIKI 323
|
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex. Rattus norvegicus (taxid: 10116) |
| >sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S DR I +W + D K L GH I D+ W++D
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDS 95
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
S+++SAS DKTL+ WDV +GK +K + H+++V CC L++SGS D T K+W++
Sbjct: 96 SRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T ++AV F+ + I +G D ++WD G+ TL + ++
Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+LT +D L +WD + RC+K GH++ EK + +S G K
Sbjct: 215 FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTGHKN--EKYCIFANFSVTGGK 268
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKL 325
|
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex. Homo sapiens (taxid: 9606) |
| >sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 15/298 (5%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWT 109
+ L GH +A+ ++KF+P G +AS + D I +W + G+CK L GH I D+ W+
Sbjct: 33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKK--TLYGHSLEISDVAWS 90
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
+D S+++SAS DKTL+ WD+ +GK +K + H+ FV CC L+VSGS D + K+
Sbjct: 91 SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKI 149
Query: 170 WDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD- 227
W+++ ++T I+AV+F+ I +G D ++WD G+ TL +
Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
++ + SP+G Y+LT +D L +WD + RC+K GH++ EK L +S
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTGHKN--EKYCLFASFSVT 263
Query: 288 GSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQI 342
G K V +GS D MVYIW+ ++ I+ +L GHT V + H T+ +I S + +DK I
Sbjct: 264 GRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTI 321
|
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex. Mus musculus (taxid: 10090) |
| >sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 13/297 (4%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH AV ++KF+P G +AS S DR I +W + D K L GH I D+ W++D
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYERTLYGHNLEISDVAWSSDS 95
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
S+++SAS DKTL+ WD+ +GK +K + H+++V CC L++SGS D T K+W++
Sbjct: 96 SRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154
Query: 173 RQRGAIQTFPDKYQ-ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD-MIT 230
+ ++T ++AV F+ + I +G D ++WD G+ TL + ++
Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
+ SP+G Y+LT +D L +WD + RC+K GH++ EK + +S G K
Sbjct: 215 FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTGHKN--EKYCIFANFSVTGGK 268
Query: 291 -VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYL 344
+ +GS D +VYIW+ ++ I+ KL GHT V + H TE +I S + +DK I L
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKL 325
|
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex. Pongo abelii (taxid: 9601) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| 356571748 | 345 | PREDICTED: U5 small nuclear ribonucleopr | 0.976 | 0.982 | 0.905 | 0.0 | |
| 358248088 | 345 | uncharacterized protein LOC100789793 [Gl | 0.976 | 0.982 | 0.908 | 0.0 | |
| 357508793 | 345 | U5 snRNP-specific protein-like factor [M | 0.976 | 0.982 | 0.902 | 0.0 | |
| 255567774 | 345 | WD-repeat protein, putative [Ricinus com | 0.979 | 0.985 | 0.9 | 0.0 | |
| 388502474 | 345 | unknown [Medicago truncatula] | 0.976 | 0.982 | 0.896 | 0.0 | |
| 449435105 | 344 | PREDICTED: U5 small nuclear ribonucleopr | 0.976 | 0.985 | 0.890 | 0.0 | |
| 449531545 | 344 | PREDICTED: LOW QUALITY PROTEIN: U5 small | 0.976 | 0.985 | 0.887 | 0.0 | |
| 225434135 | 344 | PREDICTED: U5 small nuclear ribonucleopr | 0.974 | 0.982 | 0.905 | 0.0 | |
| 297828095 | 343 | transducin family protein [Arabidopsis l | 0.988 | 1.0 | 0.873 | 0.0 | |
| 224146578 | 345 | predicted protein [Populus trichocarpa] | 0.994 | 1.0 | 0.867 | 0.0 |
| >gi|356571748|ref|XP_003554035.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 1 [Glycine max] gi|356571750|ref|XP_003554036.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 2 [Glycine max] gi|356571752|ref|XP_003554037.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/339 (90%), Positives = 326/339 (96%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
E E+ALS V RPMEWSTVPY+APQAPGPNGKQRTSSLESPIMLL+GHQSA+YTMKFNPA
Sbjct: 7 EGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYTMKFNPA 66
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G+V+ASGSHDR+IFLW+VHGDCKNFMVLKGHKNA+LDLHWTTDG+QI+SASPDKT+RAWD
Sbjct: 67 GSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTVRAWD 126
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
VETGKQIKKM EH S+VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG+IQTFPDKYQIT
Sbjct: 127 VETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQIT 186
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AV FSDASDKI+TGGIDNDVK+WDLRKGEV+MTLQGHQDMIT M LSPDGSYLLTNGMDC
Sbjct: 187 AVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLLTNGMDC 246
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVK+LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR
Sbjct: 247 KLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 306
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGH GSVNE VFH EP+IGSCSSDKQIYLGEI
Sbjct: 307 RILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248088|ref|NP_001239810.1| uncharacterized protein LOC100789793 [Glycine max] gi|255645285|gb|ACU23139.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/339 (90%), Positives = 326/339 (96%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
E E+ALS V RPMEWSTVPY+APQAPGPNGKQRTSSLESPIMLL+GHQSA+YTMKFNPA
Sbjct: 7 EGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYTMKFNPA 66
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G+VIASGSHDR+IFLW+VHGDCKNFMVLKGHKNA+LDLHWTTDG+QI+SASPDKT+RAWD
Sbjct: 67 GSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTVRAWD 126
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
VETGKQIKKM EH S+VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG+IQTFPDKYQIT
Sbjct: 127 VETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQIT 186
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AV FSDASDKI+TGGIDNDVK+WDLRKGEV+MTLQGHQDMIT M LSPDGSYLLTNGMDC
Sbjct: 187 AVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITDMQLSPDGSYLLTNGMDC 246
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVK+LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR
Sbjct: 247 KLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 306
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGH GSVNE VFH EP+IGSCSSDKQIYLGEI
Sbjct: 307 RILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508793|ref|XP_003624685.1| U5 snRNP-specific protein-like factor [Medicago truncatula] gi|355499700|gb|AES80903.1| U5 snRNP-specific protein-like factor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/339 (90%), Positives = 326/339 (96%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
ENE+ALS V ++PMEWSTVPY+AP+APGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP
Sbjct: 7 ENEHALSVVGSKPMEWSTVPYNAPRAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPT 66
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G+V+ASGSHD++IFLW+VHGDCKNFMVLKGHKNA+LDLHWT+DG+QIISASPDKTLR WD
Sbjct: 67 GSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIISASPDKTLRLWD 126
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
ETGKQIKKM EH S+VNSCCP+RRGPPLVVSGSDDGTAKLWDMRQRG+IQTFPDKYQIT
Sbjct: 127 TETGKQIKKMVEHLSYVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQIT 186
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AVSFSDASDKIYTGGIDNDVK+WDLRKGEV+MTLQGHQDMIT M LSPDGSYLLTNGMDC
Sbjct: 187 AVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLLTNGMDC 246
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR
Sbjct: 247 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 306
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGH GSVNE VFH EP++GSCSSDKQIYLGEI
Sbjct: 307 RILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 345
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567774|ref|XP_002524865.1| WD-repeat protein, putative [Ricinus communis] gi|223535828|gb|EEF37489.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/340 (90%), Positives = 325/340 (95%)
Query: 8 RENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP 67
RE +NALS +RPMEWSTVPY+ Q PGP+GKQRTSSLES IMLLTGHQSAVYTMKFNP
Sbjct: 6 REGDNALSVPGSRPMEWSTVPYTGLQGPGPSGKQRTSSLESTIMLLTGHQSAVYTMKFNP 65
Query: 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127
AG +IASGSHD+DIFLW+VHG+CKNFMVLKGHKNA+LDLHWTTDGSQIISASPDKT+RAW
Sbjct: 66 AGNLIASGSHDKDIFLWYVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDKTVRAW 125
Query: 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI 187
D+ETGKQIKKMAEH+SFVNSCCP+RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI
Sbjct: 126 DIETGKQIKKMAEHSSFVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI 185
Query: 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247
TAVSFSDASDKI+TGGIDN+VKVWDLRKGEV+M L+GHQDMITGM LSPDGSYLLTNGMD
Sbjct: 186 TAVSFSDASDKIFTGGIDNEVKVWDLRKGEVTMKLEGHQDMITGMQLSPDGSYLLTNGMD 245
Query: 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307
CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC WSPDG+KVTAGSSDRMVYIWDTTS
Sbjct: 246 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCNWSPDGTKVTAGSSDRMVYIWDTTS 305
Query: 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RRILYKLPGHTGSVNE VFH EP+IGSCSSDKQIYLGEI
Sbjct: 306 RRILYKLPGHTGSVNECVFHPHEPIIGSCSSDKQIYLGEI 345
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388502474|gb|AFK39303.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/339 (89%), Positives = 324/339 (95%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
ENE+ALS V ++PMEWSTVPY+AP+APGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNP
Sbjct: 7 ENEHALSVVGSKPMEWSTVPYNAPRAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPT 66
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G+V+ASGSHD++IFLW+VHGDCKNFMVLKGHKNA+LDLHWT+DG+QIISASPDKTLR WD
Sbjct: 67 GSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIISASPDKTLRLWD 126
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
ETGKQIKKM EH S+VNSCCP+R GPPLVVSGSDDGTAKLWD RQRG+IQTFPDKYQIT
Sbjct: 127 TETGKQIKKMVEHLSYVNSCCPTRMGPPLVVSGSDDGTAKLWDTRQRGSIQTFPDKYQIT 186
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AVSFSDASDKIYTGGIDNDVK+WDLRKGEV+MTLQGHQDMIT M LSPDGSYLLTNGMDC
Sbjct: 187 AVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLLTNGMDC 246
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR
Sbjct: 247 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 306
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGH GSVNE VFH EP++GSCSSDKQIYLGEI
Sbjct: 307 RILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 345
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435105|ref|XP_004135336.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/339 (89%), Positives = 321/339 (94%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
E ENAL+TV RPMEWSTVPY+ PQ PGPN KQRTSSLESPIMLL+GHQSA+YT+KFNP
Sbjct: 6 EGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTLKFNPD 65
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G V+ASGSHD++IFLW+VHGDCKNFMVL+GHKNA+LDLHWT DGSQI+SASPDKTLRAWD
Sbjct: 66 GNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWD 125
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
VETGKQIKKMAEH+SFVNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRGAIQTFPDKYQIT
Sbjct: 126 VETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 185
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AVSFSDASDKI+TGGIDNDVKVWDLRKGEV MTLQGHQDMITGM LSPDGSYLLTNGMDC
Sbjct: 186 AVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDC 245
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVKI EGHQHNFEKNLLKC WS DGSKVTAGSSDRMVYIWDTTSR
Sbjct: 246 KLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSR 305
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGHTGSVNE VFH +EP++ SC SDKQIYLGEI
Sbjct: 306 RILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531545|ref|XP_004172746.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/339 (88%), Positives = 320/339 (94%)
Query: 9 ENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
E ENAL+TV RPMEWSTVPY+ PQ PGPN KQRTSSLESPIMLL+GHQSA+YT+KFNP
Sbjct: 6 EGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTLKFNPD 65
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
G V+ASGSHD++IFLW+VHGDCKNFMVL+GHKNA+LDLHWT DGSQI+SASPDKTLRAWD
Sbjct: 66 GNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWD 125
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
VETGKQIKKMAEH+SFVNSCCP+RRGPPL+VSGSDDGTAKLWDMRQRGAIQTFPDKYQIT
Sbjct: 126 VETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 185
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AVSFSDASDKI+TGGIDNDVKVWDLRKGEV MTLQGHQDMITGM LSPDGSYLLTNGMDC
Sbjct: 186 AVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDC 245
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVKI EGHQHNF KNLLKC WS DGSKVTAGSSDRMVYIWDTTSR
Sbjct: 246 KLCIWDMRPYAPQNRCVKIFEGHQHNFXKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSR 305
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGHTGSVNE VFH +EP++ SC SDKQIYLGEI
Sbjct: 306 RILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434135|ref|XP_002277631.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/339 (90%), Positives = 322/339 (94%), Gaps = 1/339 (0%)
Query: 10 NENALSTVSARP-MEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPA 68
+ENALS V RP ME S VP + P+APG NGKQRTSSLESPIMLL GHQSA+YTMKFNP
Sbjct: 6 SENALSVVGPRPGMELSAVPCTGPRAPGANGKQRTSSLESPIMLLAGHQSAIYTMKFNPT 65
Query: 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
GTVIASGSH+R+IFLW+VHGDCKNFMVLKGHKNAILDL WTTDG+QIISASPDKTLRAWD
Sbjct: 66 GTVIASGSHEREIFLWYVHGDCKNFMVLKGHKNAILDLQWTTDGTQIISASPDKTLRAWD 125
Query: 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
VETGKQIKKMAEH+SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT
Sbjct: 126 VETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 185
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
AVSFSDASDKI+TGGIDNDVKVWDLR+ EV+MTLQGHQDMITGM LSPDGSYLLTNGMDC
Sbjct: 186 AVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHQDMITGMQLSPDGSYLLTNGMDC 245
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC WSPDGSKVTAGSSDRMVYIWDTTSR
Sbjct: 246 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSR 305
Query: 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
RILYKLPGHTGSVNE VFH +EP++GSCSSDKQIYLGEI
Sbjct: 306 RILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828095|ref|XP_002881930.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297327769|gb|EFH58189.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/347 (87%), Positives = 327/347 (94%), Gaps = 4/347 (1%)
Query: 1 MEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAV 60
ME++ RENE ALS RPMEWSTVP+SAPQ PGPNGK RTSSLE+PIMLL+GH SAV
Sbjct: 1 MEIM--PRENETALS--GPRPMEWSTVPHSAPQGPGPNGKNRTSSLEAPIMLLSGHPSAV 56
Query: 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP 120
YTMKFNPAGT+IASGSHDR+IFLW VHGDCKNFMVLKGHKNAILDLHWT+DGSQI+SASP
Sbjct: 57 YTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASP 116
Query: 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180
DKT+RAWDVETGKQIKKMAEH+SFVNSCCP+RRGPPLV+SGSDDGTAKLWDMRQRGAIQT
Sbjct: 117 DKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLVISGSDDGTAKLWDMRQRGAIQT 176
Query: 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240
FPDKYQITAVSFSDA+DKI+TGG+DNDVKVWDLRKGE +MTL+GHQD ITGMSLSPDGSY
Sbjct: 177 FPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSY 236
Query: 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
LLTNGMD KLC+WDMRPYAPQNRCVKI +GHQHNFEKNLLKC WSPDG+KVTAGSSDRMV
Sbjct: 237 LLTNGMDNKLCVWDMRPYAPQNRCVKIFDGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMV 296
Query: 301 YIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+IWDTTSRRI+YKLPGHTGSVNE VFH TEP+IGSCSSDK IYLGEI
Sbjct: 297 HIWDTTSRRIMYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146578|ref|XP_002326058.1| predicted protein [Populus trichocarpa] gi|222862933|gb|EEF00440.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/347 (86%), Positives = 325/347 (93%), Gaps = 2/347 (0%)
Query: 1 MEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAV 60
M+VV RE+E+ALS RPMEWSTVPY+ Q PG NGKQR SSLESPIMLLTGHQSA+
Sbjct: 1 MQVVP--RESESALSVSGPRPMEWSTVPYTGSQGPGHNGKQRRSSLESPIMLLTGHQSAI 58
Query: 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP 120
YTMKFNPAG VIASGSHD++IFLW++HG+CKNFMV++GHKNA+LDLHWT DGSQIISASP
Sbjct: 59 YTMKFNPAGNVIASGSHDKEIFLWYMHGECKNFMVMRGHKNAVLDLHWTADGSQIISASP 118
Query: 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180
DKT+RAWDVETGKQIKKMAEH+SFVNSCCPSRRGPPLVVSGSDDGT+KLWD+RQ+GAIQT
Sbjct: 119 DKTVRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTSKLWDLRQKGAIQT 178
Query: 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240
FPDKYQITAVSFSDASDKI+TGGIDNDVKVWD+RKGEV+MTL+GHQDMIT M LSPDGSY
Sbjct: 179 FPDKYQITAVSFSDASDKIFTGGIDNDVKVWDIRKGEVTMTLEGHQDMITSMQLSPDGSY 238
Query: 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
LLTNGMD KLCIWDMRPYAPQNRCVKI EGHQHNFEKNLLKC WSPDGSKVTAGS+DRMV
Sbjct: 239 LLTNGMDNKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSADRMV 298
Query: 301 YIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
YIWDTTSRRILYKLPGH GSVNE VFH TEP+IGSCSSDKQIYLGEI
Sbjct: 299 YIWDTTSRRILYKLPGHAGSVNECVFHPTEPIIGSCSSDKQIYLGEI 345
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| TAIR|locus:2043929 | 343 | AT2G43770 "AT2G43770" [Arabido | 0.988 | 1.0 | 0.867 | 1.5e-170 | |
| UNIPROTKB|F1MLP7 | 358 | SNRNP40 "U5 small nuclear ribo | 0.916 | 0.888 | 0.603 | 7.6e-112 | |
| UNIPROTKB|F1SVA6 | 358 | SNRNP40 "Uncharacterized prote | 0.916 | 0.888 | 0.603 | 7.6e-112 | |
| UNIPROTKB|Q2HJH6 | 358 | SNRNP40 "U5 small nuclear ribo | 0.916 | 0.888 | 0.600 | 1.6e-111 | |
| MGI|MGI:1913835 | 358 | Snrnp40 "small nuclear ribonuc | 0.922 | 0.893 | 0.587 | 1.6e-111 | |
| UNIPROTKB|Q96DI7 | 357 | SNRNP40 "U5 small nuclear ribo | 0.890 | 0.865 | 0.611 | 2e-111 | |
| UNIPROTKB|F1NUK8 | 384 | SNRNP40 "Uncharacterized prote | 0.893 | 0.807 | 0.609 | 5.3e-111 | |
| ZFIN|ZDB-GENE-040426-978 | 347 | snrnp40 "small nuclear ribonuc | 0.982 | 0.982 | 0.548 | 3e-108 | |
| UNIPROTKB|B4DQJ1 | 409 | SNRNP40 "U5 small nuclear ribo | 0.850 | 0.721 | 0.610 | 1.5e-106 | |
| DICTYBASE|DDB_G0271788 | 355 | wdr57 "putative U5 small nucle | 0.890 | 0.870 | 0.567 | 1.5e-99 |
| TAIR|locus:2043929 AT2G43770 "AT2G43770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1658 (588.7 bits), Expect = 1.5e-170, P = 1.5e-170
Identities = 301/347 (86%), Positives = 326/347 (93%)
Query: 1 MEVVTHQRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAV 60
ME+++ RENE ALS RPMEWSTVP+SA Q PGPNGK RTSSLE+PIMLL+GH SAV
Sbjct: 1 MEIMS--RENETALS--GPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAV 56
Query: 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP 120
YTMKFNPAGT+IASGSHDR+IFLW VHGDCKNFMVLKGHKNAILDLHWT+DGSQI+SASP
Sbjct: 57 YTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASP 116
Query: 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180
DKT+RAWDVETGKQIKKMAEH+SFVNSCCP+RRGPPL++SGSDDGTAKLWDMRQRGAIQT
Sbjct: 117 DKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQT 176
Query: 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240
FPDKYQITAVSFSDA+DKI+TGG+DNDVKVWDLRKGE +MTL+GHQD ITGMSLSPDGSY
Sbjct: 177 FPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSY 236
Query: 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
LLTNGMD KLC+WDMRPYAPQNRCVKI EGHQHNFEKNLLKC WSPDG+KVTAGSSDRMV
Sbjct: 237 LLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMV 296
Query: 301 YIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+IWDTTSRR +YKLPGHTGSVNE VFH TEP+IGSCSSDK IYLGEI
Sbjct: 297 HIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343
|
|
| UNIPROTKB|F1MLP7 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 192/318 (60%), Positives = 252/318 (79%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+AP A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 40 AAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 219
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +
Sbjct: 220 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQ 279
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH
Sbjct: 280 GNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPD 339
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 340 EPIILSASSDKRLYMGEI 357
|
|
| UNIPROTKB|F1SVA6 SNRNP40 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 192/318 (60%), Positives = 252/318 (79%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+AP A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 40 AAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 219
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +
Sbjct: 220 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQ 279
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH
Sbjct: 280 GNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPD 339
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 340 EPIILSASSDKRLYMGEI 357
|
|
| UNIPROTKB|Q2HJH6 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 191/318 (60%), Positives = 252/318 (79%)
Query: 30 SAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD 89
+AP A G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GD
Sbjct: 40 AAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD 99
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCC 149
C N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC
Sbjct: 100 CDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCY 159
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
P+RRGP LV +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+K
Sbjct: 160 PARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK 219
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
VWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCV+I +
Sbjct: 220 VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQ 279
Query: 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329
G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH
Sbjct: 280 GNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPD 339
Query: 330 EPVIGSCSSDKQIYLGEI 347
EP+I S SSDK++Y+GEI
Sbjct: 340 EPIILSASSDKRLYMGEI 357
|
|
| MGI|MGI:1913835 Snrnp40 "small nuclear ribonucleoprotein 40 (U5)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 191/325 (58%), Positives = 253/325 (77%)
Query: 28 PYSAPQAPGPN-----GKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIF 82
P + PQ P G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I
Sbjct: 33 PGAGPQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLIL 92
Query: 83 LWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHN 142
LW+V+GDC N+ LKGH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H
Sbjct: 93 LWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT 152
Query: 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202
SFVNSC P+RRGP LV +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +G
Sbjct: 153 SFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISG 212
Query: 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262
GIDND+KVWDLR+ +++ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+
Sbjct: 213 GIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKE 272
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN 322
RCVKI +G+ HNFEKNLL+C WSPDGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+N
Sbjct: 273 RCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSIN 332
Query: 323 ESVFHATEPVIGSCSSDKQIYLGEI 347
E FH EP+I S SSDK++Y+GEI
Sbjct: 333 EVAFHPDEPIILSASSDKRLYMGEI 357
|
|
| UNIPROTKB|Q96DI7 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 189/309 (61%), Positives = 248/309 (80%)
Query: 39 GKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG 98
G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GDC N+ LKG
Sbjct: 48 GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV 158
H A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167
Query: 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
+GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227
Query: 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278
+ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338
LL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH EP+I S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347
Query: 339 DKQIYLGEI 347
DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356
|
|
| UNIPROTKB|F1NUK8 SNRNP40 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 189/310 (60%), Positives = 247/310 (79%)
Query: 38 NGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK 97
+G R SSL++PIMLL+GH+ VY KF+P G +AS DR I LW+V+GDC N+ LK
Sbjct: 74 SGPPRCSSLQAPIMLLSGHEGEVYCCKFHPWGNTLASAGFDRLILLWNVYGDCDNYATLK 133
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157
GH A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP L
Sbjct: 134 GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 193
Query: 158 VVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217
V +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ +
Sbjct: 194 VCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 253
Query: 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
++ T++GH D +TG+SLS +GSYLL+N MD + IWD+RP+AP+ RCVKI +G+ HNFEK
Sbjct: 254 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEK 313
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
NLL+C WSPDGSK+ GS+DR VY+WDTTSRRILYKLPGH GSVNE FH EP+I S S
Sbjct: 314 NLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILSAS 373
Query: 338 SDKQIYLGEI 347
SDK++Y+GEI
Sbjct: 374 SDKRLYMGEI 383
|
|
| ZFIN|ZDB-GENE-040426-978 snrnp40 "small nuclear ribonucleoprotein 40 (U5)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 187/341 (54%), Positives = 256/341 (75%)
Query: 7 QRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFN 66
+R + A+ V + V + Q G R+SSL++PIMLL+GH+ VY KF+
Sbjct: 6 KRVADMAVVPVGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVYCCKFH 65
Query: 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
P G +AS +DR I +W+V+GDC+N+ LKGH A+++LH+ TDGS + SAS DKT+
Sbjct: 66 PNGATLASSGYDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTDKTVCV 125
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ 186
WD ETG+++K++ H SFVNSC P+RRGP L +GSDDGT KLWD+R++ ++ TF + YQ
Sbjct: 126 WDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTFQNTYQ 185
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246
+ +V+F+D SD+I +GGIDND+KVWDLR+ ++ ++QGH D +TG+SLS DGSYLL+N M
Sbjct: 186 VLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYLLSNSM 245
Query: 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306
D + +WD+RP+AP+ RCVKI +G+ HNFEKNLL+C WS DGSK+ AGS+DR VYIWDTT
Sbjct: 246 DNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYIWDTT 305
Query: 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+RRI+YKLPGH GSVNE FH EP++ S SSDK++Y+GEI
Sbjct: 306 TRRIVYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEI 346
|
|
| UNIPROTKB|B4DQJ1 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 180/295 (61%), Positives = 236/295 (80%)
Query: 39 GKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG 98
G R SSL++PIMLL+GH+ VY KF+P G+ +AS DR I LW+V+GDC N+ LKG
Sbjct: 48 GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV 158
H A+++LH+ TDGS + SAS DKT+ WD ETG+++K++ H SFVNSC P+RRGP LV
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167
Query: 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
+GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227
Query: 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278
+ T++GH D +TG+SLS +GSYLL+N MD + +WD+RP+AP+ RCVKI +G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333
LL+C WSPDGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE FH EP+I
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPII 342
|
|
| DICTYBASE|DDB_G0271788 wdr57 "putative U5 small nuclear ribonucleoprotein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 176/310 (56%), Positives = 229/310 (73%)
Query: 39 GKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG 98
G +RTS LE PIM L GH+ +Y+ KFN GT +ASG D++IFLW+V+G+C N+ VLKG
Sbjct: 44 GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103
Query: 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV 158
HK IL+LHW+TD ++I +A DK++ WD G+ IK++ EH+ VNSCCP+RRGPPLV
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163
Query: 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
SGSDD +A+++D R +G+ F KY +T+V FSDASD++ TGGIDN ++VWD+R E
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223
Query: 219 SM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ TL HQD IT S+S DG+YLL+N MD IWD+RPYAP NR +K G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
NL+K WS DG ++ GSSDR VYIWDT ++++ Y LPGH+G+VNE FH EP+I SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343
Query: 338 SDKQIYLGEI 347
SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5RF51 | SNR40_PONAB | No assigned EC number | 0.5943 | 0.8443 | 0.8207 | yes | no |
| Q55AR8 | SNR40_DICDI | No assigned EC number | 0.5677 | 0.8904 | 0.8704 | yes | no |
| O94620 | CWF17_SCHPO | No assigned EC number | 0.4397 | 0.8818 | 0.9 | yes | no |
| Q6PE01 | SNR40_MOUSE | No assigned EC number | 0.5981 | 0.8386 | 0.8128 | yes | no |
| Q96DI7 | SNR40_HUMAN | No assigned EC number | 0.6006 | 0.8443 | 0.8207 | yes | no |
| Q2HJH6 | SNR40_BOVIN | No assigned EC number | 0.6006 | 0.8443 | 0.8184 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 347 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-68 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-57 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-49 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-43 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-41 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-40 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-40 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-28 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-15 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 7e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 4e-68
Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 11/293 (3%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH V + F+P G ++A+GS D I +W + LKGH + D+ + DG
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAASADG 63
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ + S S DKT+R WD+ETG+ ++ + H S+V+S S G ++ S S D T K+WD+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122
Query: 173 RQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
+ T + +V+FS + + D +K+WDLR G+ TL GH +
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291
++ SPDG LL++ D + +WD+ +C+ L GH E + +SPDG +
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGH----ENGVNSVAFSPDGYLL 234
Query: 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+GS D + +WD + + L GHT SV + + S S+D I +
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-57
Identities = 87/259 (33%), Positives = 136/259 (52%), Gaps = 11/259 (4%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDL 106
+ L GH V + + GT +ASGS D+ I LW + L GH + + +
Sbjct: 41 GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-TLTGHTSYVSSV 99
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
++ DG + S+S DKT++ WDVETGK + + H +VNS S V S S DGT
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158
Query: 167 AKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
KLWD+R + T ++ +V+FS +K+ + D +K+WDL G+ TL+GH
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 226 QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285
++ + ++ SPDG L + D + +WD+R CV+ L GH + ++ WS
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG----ECVQTLSGHTN----SVTSLAWS 270
Query: 286 PDGSKVTAGSSDRMVYIWD 304
PDG ++ +GS+D + IWD
Sbjct: 271 PDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-49
Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG 154
LKGH + + ++ DG + + S D T++ WD+ETG+ ++ + H V S G
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 155 PPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDL 213
+ SGS D T +LWD+ ++T +++V+FS + + D +KVWD+
Sbjct: 64 -TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Query: 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273
G+ TL+GH D + ++ SPDG+++ ++ D + +WD+R +CV L GH
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTGH-- 176
Query: 274 NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333
+ +SPDG K+ + SSD + +WD ++ + L L GH VN F ++
Sbjct: 177 --TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 334 GSCSSDKQIYL 344
S S D I +
Sbjct: 235 ASGSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-43
Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 141 HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKI 199
H V S G L+ +GS DGT K+WD+ ++T + V+ S +
Sbjct: 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66
Query: 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259
+G D +++WDL GE TL GH ++ ++ SPDG L ++ D + +WD+
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG- 125
Query: 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319
+C+ L GH + +SPDG+ V + S D + +WD + + + L GHTG
Sbjct: 126 ---KCLTTLRGH----TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 320 SVNESVFHATEPVIGSCSSDKQIYLGEI 347
VN F + S SSD I L ++
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 149 bits (375), Expect = 5e-41
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 11/281 (3%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDV 129
++AS S D + LW + K L+GH ++ L ++ DG + S S D T++ WD+
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFPDKYQIT 188
TGK + +A H V+S S G L+ SGS DGT +LWD+ ++ T
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247
SFS + +G D +++WDLR + TL GH + ++ SPDG L + D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTT 306
+ +WD+ + L+GH E + +SPDGS V+ GS D + +WD
Sbjct: 306 GTVRLWDLE--TGKLLSSLTLKGH----EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
Query: 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ + L L GH+ +V F V+ S S+D + L ++
Sbjct: 360 TGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 146 bits (367), Expect = 7e-40
Identities = 109/313 (34%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 44 SSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSH-DRDIFLWHVHGDCKNFMVLKGHKNA 102
S+ I L GH +V ++ F+P G ++ASGS D I LW + K L GH +
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDP 200
Query: 103 ILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKM--AEHNSFVNSCCPSRRGPPLVV 159
+ L ++ DG +I S S D T+R WD+ TGK ++ +S V+S P L+
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS---LLA 257
Query: 160 SGSDDGTAKLWDMRQ-RGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217
SGS DGT +LWD+R ++T + +V+FS + +G D V++WDL G+
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317
Query: 218 V--SMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHN 274
+ S+TL+GH+ ++ +S SPDGS L++ G D + +WD+R + +K LEGH
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR----TGKPLKTLEGH--- 370
Query: 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334
N+L +SPDG V++GS+D V +WD ++ +L L GHT V F +
Sbjct: 371 --SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 335 SCSSDKQIYLGEI 347
S SSD I L ++
Sbjct: 429 SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 146 bits (367), Expect = 7e-40
Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 19/305 (6%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-HKNAILDLHWT 109
+LL GH+ ++ ++ F+P G ++ SGS D I LW + K L+G H +++ L +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 110 T-DGSQIISA--SPDKTLRAWDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165
+ DG+ I+ A S D T++ WD+ T GK I+ + H+ V S S G L S DG
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 166 TAKLWDMRQRGAIQTFPD-KYQITAVSFS-DASDKIYTGGIDNDVKVWDLRKGEV-SMTL 222
T KLWD+R + T +++++FS D I +G D +++WDL G++ TL
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282
GH D + S SPDGS L + D + +WD+R + ++ L GH ++L
Sbjct: 239 SGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSGHS----SSVLSV 290
Query: 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILY--KLPGHTGSVNESVFHATEPVI-GSCSSD 339
+SPDG + +GSSD V +WD + ++L L GH G V+ F ++ S D
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 340 KQIYL 344
I L
Sbjct: 351 GTIRL 355
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (290), Expect = 4e-29
Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 17/266 (6%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDL 106
P+ L GH V ++ F+P G +IASGS D I LW + L GH ++++
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQ-IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165
++ DGS + S S D T+R WD+ + ++ ++ H+S V S S G L+ SGS DG
Sbjct: 249 -FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDG 306
Query: 166 TAKLWDMRQRGAIQTFPDKY---QITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSMT 221
T +LWD+ + + K ++++SFS + +GG D +++WDLR G+ T
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 222 LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281
L+GH + +S SPDG + + D + +WD ++ L+GH +
Sbjct: 367 LEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWD----LSTGSLLRNLDGHTSR----VTS 417
Query: 282 CGWSPDGSKVTAGSSDRMVYIWDTTS 307
+SPDG + +GSSD + +WD +
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 4e-28
Identities = 79/263 (30%), Positives = 139/263 (52%), Gaps = 17/263 (6%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM--AEHNSFVNS- 147
+ ++L+GH+++I + ++ DG ++S S D T++ WD++ G+++ K H+S V+
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115
Query: 148 CCPSRRGPPLVVSGSD-DGTAKLWDMR-QRGAIQTFPDKYQ-ITAVSFSDASDKIYTGG- 203
S G ++++ S DGT KLWD+ I+T + +T+++FS + +G
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175
Query: 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQN 262
+D +K+WDLR G+ TL GH D ++ ++ SPDG + + D + +WD+
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGK 232
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT-TSRRILYKLPGHTGSV 321
L GH + + +SPDGS + +GSSD + +WD +S +L L GH+ SV
Sbjct: 233 LLRSTLSGHSDSVVSS-----FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287
Query: 322 NESVFHATEPVIGSCSSDKQIYL 344
F ++ S SSD + L
Sbjct: 288 LSVAFSPDGKLLASGSSDGTVRL 310
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (188), Expect = 3e-15
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
SQ+ S++ + ++ WDV + + +M EH V S S P L+ SGSDDG+ KLW +
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Query: 173 RQRGAIQTFPDKYQITAVSF-SDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMIT 230
Q +I T K I V F S++ + G D+ V +DLR ++ + T+ GH ++
Sbjct: 606 NQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDM 255
+ D S L+++ D L +WD+
Sbjct: 666 YVRFV-DSSTLVSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 43 TSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHK 100
T ++ PI+ L GH V + F+P A V+AS D + +W V G V+K H
Sbjct: 111 TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--VIKCHS 168
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVV- 159
+ I L W DGS + + S DK L D G + + H S + C + L++
Sbjct: 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228
Query: 160 ---SGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS---FSDASDKIYTGGI-DNDVKVWD 212
S S LWD R+ + + D Q +A+ F + ++ +Y G + +++ ++
Sbjct: 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288
Query: 213 LRKG 216
L
Sbjct: 289 LMNE 292
|
Length = 493 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (155), Expect = 2e-11
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL 242
+ + ++ S++ + D+ V + DL S+ L+GH+D IT ++ SPDG LL
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLL 81
Query: 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS--DRMV 300
+ D + +WD + +K LEG H+ + L SPDG+ + SS D V
Sbjct: 82 SGSSDGTIKLWD---LDNGEKLIKSLEGL-HDSSVSKLAL-SSPDGNSILLASSSLDGTV 136
Query: 301 YIWD-TTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS-DKQIYL 344
+WD +T +++ L GH+ SV F ++ S SS D I L
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-07
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254
GE+ TL+GH +T ++ SPDG YL + D + +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 160 SGSDDGTAKLWDMRQRGAIQTFPD--------KYQITAVSF-SDASDKIYTGGIDNDVKV 210
+ S+DGT W + + G Q D ++ VSF A + + + G D V V
Sbjct: 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270
WD+ +G+ ++ H D IT + + DGS L T D KL I D R +
Sbjct: 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR------DGTIVSSV 206
Query: 271 HQHNFEKNLLKCGWSPDGSKV-TAG---SSDRMVYIWDTTSRRILYKLPGHTGSVNES 324
H K+ +C W+ + T G S R + +WDT R + P T +++S
Sbjct: 207 EAHASAKS-QRCLWAKRKDLIITLGCSKSQQRQIMLWDT---RKMAS-PYSTVDLDQS 259
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254
G++ TL+GH +T ++ SPDG+ L + D + +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 49 PIMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNF-------MVLKGHK 100
P++ L GH S++ ++FNP ++ASGS D I +W + + ++ +LKGHK
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125
Query: 101 NAILDLHWTTDGSQIISASP-DKTLRAWDVETGKQ 134
I + W I+ +S D + WD+E K+
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160
|
Length = 568 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-06
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+ L GH V ++ F+P G +ASGS D I LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-06
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85
+ L GH V ++ F+P G ++ASGS D + +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
LKGH + + ++ DG + S S D T++ WD
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128
K LKGH + + ++ DG+ + S S D T+R WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-05
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+G+ +K + H V S S G + SGSDDGT KLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-05
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
GK ++ + H V S S G L+ SGSDDGT ++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 8e-04
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
+K L+GH + +SPDG + +GS D + +WD
Sbjct: 1 SGELLKTLKGHTGP----VTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ ++ L+GH + +SPDG+ + +GS D V +WD
Sbjct: 2 KLLRTLKGH----TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.94 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.88 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.87 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.83 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.81 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.8 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.8 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.76 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.71 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.67 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.62 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.61 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.55 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.54 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.51 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.43 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.42 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.39 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.37 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.36 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.31 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.29 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.28 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.27 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.22 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.21 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.21 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.2 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.17 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.16 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.09 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.07 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.07 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.07 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.07 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.06 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.0 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.96 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.96 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.95 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.94 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.92 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.91 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.9 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.88 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.87 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.87 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.86 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.84 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.73 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.72 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.66 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.65 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.59 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.59 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.58 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.57 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.47 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.46 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.41 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.3 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.28 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.17 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.17 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.1 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.04 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.04 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.02 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.01 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.01 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.96 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.96 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.94 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.88 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.87 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.81 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.81 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.8 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.72 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.72 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.63 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.6 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.59 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.55 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.55 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.54 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.52 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.47 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.45 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.43 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.43 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.4 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.4 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.36 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.34 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.28 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.1 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.09 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.06 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.93 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.87 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.81 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.79 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.77 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.74 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.67 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.53 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.42 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.32 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.22 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.14 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.14 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.06 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.88 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.71 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.69 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.66 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.56 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.5 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.47 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.45 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.44 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.18 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.12 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.11 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.02 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.98 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.97 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.88 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.72 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.45 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.39 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.39 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.22 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.19 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.09 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.09 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.0 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.77 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.52 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.51 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.37 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.3 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.22 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.14 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.96 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.92 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.51 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.45 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.39 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.32 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.93 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.83 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.74 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.11 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.87 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.8 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.78 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.62 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.38 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.31 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.18 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.17 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.12 | |
| PRK10115 | 686 | protease 2; Provisional | 89.22 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 89.12 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 89.0 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 88.71 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.47 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.19 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.16 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.63 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.39 | |
| PRK10115 | 686 | protease 2; Provisional | 86.38 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.23 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 86.16 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.73 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.56 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 85.04 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 84.61 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 84.4 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 83.06 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.91 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.36 | |
| PLN02193 | 470 | nitrile-specifier protein | 81.73 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 80.41 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 80.26 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.05 |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=381.61 Aligned_cols=310 Identities=66% Similarity=1.137 Sum_probs=300.4
Q ss_pred CCCCccCCCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 38 NGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
.+.++..++..|++.+.||++.|+.+.|+|+|..|||||.|..|.+|++.++++.+..+++|+++|..+.|.+|++.|++
T Consensus 28 ~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 28 LGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred hcccccccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEE
Confidence 55666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
+|.|++++.||.++|+..++++.|...++.+.+...+..++.+|+.|+++++||+|++..+++++.+.+++++.|..++.
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.+++|+-|+.|++||++.++..+.+.+|.+.|+.|..+|+|.++++.+.|.++++||++++.+..++++.+.++.++++.
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....++|+|++.++.+|+.|+.+++||..+...+++++||.+.|+++.|||..++|.+++.|.+|++.+|
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=331.52 Aligned_cols=288 Identities=28% Similarity=0.556 Sum_probs=254.2
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.||.++|.+++|+|+|..||+|+.|.++++||+..+ .+....++|..-|.+++|+|||+.|++|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 357799999999999999999999999999999999754 5677899999999999999999999999999999999999
Q ss_pred CCcee-eeeeccCcceeEeecCCC----CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 131 TGKQI-KKMAEHNSFVNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 131 ~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+++++ ..+..|...|..+++.|- ...++++++.||.++|||+..+.++..+. |...|+|+.|-- ..++++|+.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCC
Confidence 88764 568889999999887552 23479999999999999999888877765 557899999975 358999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEEC-----------CCCC-------------------------EEEEEcCCC
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLS-----------PDGS-------------------------YLLTNGMDC 248 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-----------~~~~-------------------------~l~t~~~d~ 248 (347)
|++|++|+...|.+..++++|...|+.++.+ |.++ .|++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999998876 3344 499999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
++.+|+-.. ..+++..+.+|+ ..|..+.||||++++|++|.|+.|++||.++|+.+..++||-..|..++|+.
T Consensus 347 tlflW~p~~---~kkpi~rmtgHq----~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 347 TLFLWNPFK---SKKPITRMTGHQ----ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred eEEEecccc---cccchhhhhchh----hheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 999998643 233445556664 5688999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
|.++|+|+|.|.++++||+
T Consensus 420 DsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred CccEEEEcCCCceEEEEEe
Confidence 9999999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=330.07 Aligned_cols=292 Identities=26% Similarity=0.493 Sum_probs=260.0
Q ss_pred CCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-----CCCEEEEec
Q 019006 45 SLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-----DGSQIISAS 119 (347)
Q Consensus 45 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~~ 119 (347)
..++|.++..||..-|.|++|+|||..||+|+.||+|++||.......-..+.+|+..|++++|.| ..++|++++
T Consensus 145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 456788999999999999999999999999999999999998655555668999999999999975 567999999
Q ss_pred CCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEc-----
Q 019006 120 PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFS----- 193 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~----- 193 (347)
.||.++|||+..++++..+.+|...|.++++-.. .++++|+.|++|++|+...+..+..+.. ...|+.++.+
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence 9999999999999999999999999998887644 5899999999999999998888877754 4567766654
Q ss_pred ------CCCC-------------------------eEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEE
Q 019006 194 ------DASD-------------------------KIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 194 ------~~~~-------------------------~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l 241 (347)
|.++ .+++|+.|.++.+|+.... +++..+.+|+..|+.+.|+||++++
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI 382 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE
Confidence 3333 4999999999999987544 4677888999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
|+++-|..|++||.++ ++.+..+++|. ..|+.++|+.|.++|++||.|.++++||++++++.+.++||..+|
T Consensus 383 ASaSFDkSVkLW~g~t----Gk~lasfRGHv----~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRT----GKFLASFRGHV----AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred EEeecccceeeeeCCC----cchhhhhhhcc----ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 9999999999999885 44567788774 579999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCCCEEEEecCCCcEEeec
Q 019006 322 NESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+.|+|++..+++++.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=332.63 Aligned_cols=282 Identities=25% Similarity=0.423 Sum_probs=260.6
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEEEECCCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 132 (347)
|-+.+|..+.|++++.+||||+.+|.+++|+.. ++.....+.+|+..|.++.|+|. +..|+||+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC-CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 678899999999999999999999999999985 56778899999999999999996 568999999999999999998
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..+.+|...|..++|+|++ .++.+++.|.+-++||++++..+... .|...|.+++|.++|..+++|+.|..-+||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred cchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 9999999999999999999987 58899999999999999988765444 355689999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCE
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSK 290 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~ 290 (347)
|+|++.+++.+.+|...|.+|+|+|+|-.|||||.|++++|||++.. +.+..+.+|. +.|..+.|+| .|.+
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~----nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR----SELYTIPAHS----NLVSQVKYSPQEGYF 402 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc----ccceeccccc----chhhheEecccCCeE
Confidence 99999999999999999999999999999999999999999999853 3466777774 5688899998 7899
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++|.|+++++|...+..+++.+.||++.|.++.+++++..|+|+|.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=296.69 Aligned_cols=290 Identities=21% Similarity=0.379 Sum_probs=258.1
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+..++|+||.+.|++|.|++|.+.|++++.||.+.+||.....+ ...++-...-|..++|+|+|+++++|+.|....||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 34478999999999999999999999999999999999875433 34455566789999999999999999999999999
Q ss_pred ECCCC------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC-CCCeE
Q 019006 128 DVETG------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD-ASDKI 199 (347)
Q Consensus 128 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l 199 (347)
++.+. +..+.+..|.+++.+|.+..+ ..+++++.|.++.+||+++++.++.|. |...|.+++++| +++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 99854 345678899999998888764 468899999999999999999998886 457899999999 89999
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
++|+.|+..++||+|.+.++.++.+|...|++++|.|+|.-+++|+.|++.++||+|.. +.+..+.. ......+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD----~~~a~ys~--~~~~~gi 276 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD----QELAVYSH--DSIICGI 276 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----cEEeeecc--CcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999842 22333332 2334679
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+++||..|++|++|..|..+.+||.-.++.+..+.||++.|.++..+|++--++|+|-|.+++||-
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999993
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=275.54 Aligned_cols=286 Identities=27% Similarity=0.427 Sum_probs=247.3
Q ss_pred eEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
.+|++|.+.|..++..+. .+.|.+++.|.++.+|++.... ...+.+.||...|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 468899999999999886 5789999999999999997542 23567899999999999999999999999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--CCceEEEEEcCC--CCeEEE
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDA--SDKIYT 201 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~ 201 (347)
+||+.+++..+.|.+|...|.++++++++. .+++|+.|.+|++||+........... ...|+|+.|+|. ..++++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 999999999999999999999999988764 689999999999999976655444333 567999999998 678999
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
++.|++|++||+++.+....+.+|++.++.++++|||..+++|+.||.+.+||++. .+++..+.. ...|.+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~----~k~lysl~a-----~~~v~s 238 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE----GKNLYSLEA-----FDIVNS 238 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC----CceeEeccC-----CCeEee
Confidence 99999999999999999999999999999999999999999999999999999984 344444433 357999
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec----CC-----ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP----GH-----TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|+|..-.|+.+... .|+|||++++.++..++ +. ...-..++|+++|..|.++-.|+.|++|++
T Consensus 239 l~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 9999998888777655 49999999998876543 22 223478999999999999999999999975
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=298.45 Aligned_cols=295 Identities=24% Similarity=0.448 Sum_probs=256.8
Q ss_pred cCeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
..++.+.||+..|.++.|.| .+.+|++++.|+.|+||++......+..+.+|..+|.+++|+++|..++++|.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788999999999999999 88999999999999999998777788899999999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
||+++|+.+..+.. ...+.++.+.+++.+++++|+.|+.|+.||++.++.++.+.. ...+..+.|-+.+..+++.+.|
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999999888753 344566778888888999999999999999999999988864 4679999999999999999999
Q ss_pred CcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.++||+.+.+.....+. .+.....++..+|++++++.-+.|+.|.++.+...-.. ...+.+++|. ..+.-..+.|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~--vaGys~~v~f 440 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHS--VAGYSCQVDF 440 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc-CHhhhhccee--ccCceeeEEE
Confidence 999999998765433222 22334678999999999999999999999987643222 2234455553 3567788999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
||||.+|++|+.||.+++||..+-+++.++++|.+.+..+.|||..+ .+||||-||.|++||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999999999999999999975 899999999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=291.79 Aligned_cols=279 Identities=24% Similarity=0.495 Sum_probs=238.9
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
...|..|.|.|+|+.|++|+..|.+.+|+... ......+.+|.++|.++.|++++.++++|+.+|.|++|+.+-. .++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 45899999999999999999999999999732 2222356899999999999999999999999999999987543 233
Q ss_pred eeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 137 KMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 137 ~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
.+..| ...|.++++++.+ ..|++++.||+|+|||....+....+. +...|.++.|+|....+++|+.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44444 4788999999865 568999999999999998766655554 45689999999999999999999999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEE
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTA 293 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~s 293 (347)
++.++.++.+|+..|..+.|+|++++|+|+|.|..++++|++.. +.+..+++| ...+.++.|+|- ..+|++
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~H----kkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELFTYRGH----KKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHHHhhcc----hhhheeeccccccccceee
Confidence 99999999999999999999999999999999999999999842 223445555 457899999995 578889
Q ss_pred eeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 294 GSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+.||.|..|.+...+.+..+ .+|.+.|++++|||-|.+|++++.|.+++.|.
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999999999855555444 58999999999999999999999999999984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=288.53 Aligned_cols=241 Identities=25% Similarity=0.492 Sum_probs=225.0
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEeCCCCC
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
+-+.+|..+.|+.+++.|+|||.+|.+++|+..+...+..+.+|...+..+.|+|. ....+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45678999999999999999999999999999999999999999999999999998 46689999999999999999988
Q ss_pred ceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+++.+.+ ..+|..++|+|+|++|++++.|.+-++||++++.......+|...|.+++|++||..++|||.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 8888764 468999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC-CCCEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA-TEPVIG 334 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 334 (347)
|+ ++++-.+.+|. ..|.+++|+|+|..|||||.|++++|||++..+.++.+++|...|..|.|+| .+.+|+
T Consensus 333 Rt----gr~im~L~gH~----k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 333 RT----GRCIMFLAGHI----KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred cc----CcEEEEecccc----cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence 94 56777888874 6799999999999999999999999999999999999999999999999999 788999
Q ss_pred EecCCCcEEeec
Q 019006 335 SCSSDKQIYLGE 346 (347)
Q Consensus 335 s~s~D~~i~i~~ 346 (347)
|+|.|++++||-
T Consensus 405 TasyD~t~kiWs 416 (459)
T KOG0272|consen 405 TASYDNTVKIWS 416 (459)
T ss_pred EcccCcceeeec
Confidence 999999999993
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=279.01 Aligned_cols=288 Identities=24% Similarity=0.429 Sum_probs=261.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.||..+|+.+-|+|+-.+.++++.|++|++||... ......++||.+.|.++.|+..|++|++++.|=.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 456789999999999999999999999999999999853 3446678999999999999999999999999999999999
Q ss_pred CC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCc
Q 019006 130 ET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 130 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
++ .++++.+.+|...|.++++.|.+ ..+++++.|.+|+.|++.++-++..++.+ ..+..+..+.||..+++++.|.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 77 56677788888888888888876 68899999999999999999999998755 46888999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCC---------------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPD---------------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~---------------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
+++|-+.+.++...+..|..+|.+++|.|. ++++.+++.|++|++||+. .+.|+-.+.+|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----tg~cL~tL~ghd 334 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----TGMCLFTLVGHD 334 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----CCeEEEEEeccc
Confidence 999999999888999999999999999653 2489999999999999997 457888888874
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..|..++|+|.|+||+++.+|+++++||+.+++++..+.+|+..++++.|+.+.++++||+-|.++++|+.
T Consensus 335 ----nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 ----NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 67999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=278.13 Aligned_cols=288 Identities=25% Similarity=0.440 Sum_probs=239.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.++..|..+|+-+.|+++|++|||++.|.+..+|.+... .+...++.+|..+|..+.||||+++|++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999998543 334567899999999999999999999999999999999
Q ss_pred CCCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecC
Q 019006 129 VETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+.+|.....+... ...+.+|++.|++. .+++|+.|++|..||+.... ..... ....|.++++++||+++++.+.|
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999887766543 45677888888764 58899999999999987543 21111 22468999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
..|++|+..+......+.. ..+|++++.+.+++++++.-.+..+.+||+.. ...+..+.+|... ..+..-+|.
T Consensus 376 ~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e----~~lv~kY~Ghkq~--~fiIrSCFg 448 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEE----NKLVRKYFGHKQG--HFIIRSCFG 448 (519)
T ss_pred cceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecch----hhHHHHhhccccc--ceEEEeccC
Confidence 9999999876554434443 35799999999999999999999999999973 3445556666433 234444554
Q ss_pred -CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 286 -PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 286 -~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
.+..++++||.|+.||+|+..+++++..+.||.+.|++|+|+|..+ ++||+|.||+|+||..
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 4568999999999999999999999999999999999999999885 8999999999999963
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=296.97 Aligned_cols=292 Identities=34% Similarity=0.628 Sum_probs=255.3
Q ss_pred eeEecCc-cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 50 IMLLTGH-QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h-~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
...+.+| ...|.++.|+++|..|++++.|+.+++|+..... .....+.+|...|.+++|+|+++++++++.|++++||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3445455 7889999999999999999999999999985332 2445568999999999999999999999999999999
Q ss_pred EC-CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 128 DV-ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
|+ ..+..++.+.+|...+.++++++.+ .++++|+.|++|++||+++++++..+.. ...|++++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99 5568889999999999999999998 8999999999999999999888888764 5689999999999999999999
Q ss_pred CcEEEEeCCCCc--eEEEecCCCCc--eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 206 NDVKVWDLRKGE--VSMTLQGHQDM--ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 206 g~i~iwd~~~~~--~~~~~~~~~~~--i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
+.|++||+.++. +...+.++... ++.+.|+|++.++++++.|+.+++||++. ..+...+.+|.... ..+.+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~----~~~~~~~~~~~~~~-~~~~~ 384 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS----GKSVGTYTGHSNLV-RCIFS 384 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC----CcceeeecccCCcc-eeEec
Confidence 999999999998 56677776555 89999999999999999999999999984 34455666665431 24445
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-ccCeeeEEEcCCCCEEEEec--CCCcEEeecC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-TGSVNESVFHATEPVIGSCS--SDKQIYLGEI 347 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s--~D~~i~i~~~ 347 (347)
...++.+.++++|+.|+.|++||..++..+.++.+| ...+..++++|...++++++ .|+.+++|+.
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 556889999999999999999999999999999999 88999999999999999999 7999999973
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=276.45 Aligned_cols=277 Identities=25% Similarity=0.473 Sum_probs=244.9
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
..|++++|+.+|.+||+|+.||.+++|+.++. ....+..|+++|.++.|+..|++|++++.|+++.+||..++..-..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 57999999999999999999999999998764 4567889999999999999999999999999999999999988888
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (347)
+..|.....++.+... .-|++.+.|+.|+++-+....++.++. |+.+|.++.|+|.+..|++++.|++++||+....
T Consensus 314 f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 8777776445555433 458999999999999999888887765 5679999999999999999999999999999888
Q ss_pred ceEEEecCCCCceeEEEECCCCC---------EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGS---------YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~---------~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
.....+++|...|..+.|+|+|. .+++++.|++|++||+.. +.++..+..|. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~----gv~i~~f~kH~----~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES----GVPIHTLMKHQ----EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC----CceeEeeccCC----CceEEEEecCC
Confidence 88899999999999999999763 689999999999999874 44566666664 57999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++||+|+.||.|.+|+.+++++.+.+.+ .+.|..+.|+.++..|+.+-.|+.+++=|+
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999999999999999999888765 456999999999999999999999998664
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=264.45 Aligned_cols=289 Identities=17% Similarity=0.357 Sum_probs=241.7
Q ss_pred CcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+..+..|..|.+.|++++.+|+.+++||||.|...++|++... .....+.+|++.|+++.|+.+|.+||||+.+|.|+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 5667889999999999999999999999999999999999643 456788999999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
|...++.....+...-..+.-+.++|.. .+|++|+.||.+.+|.+.++...+.+.. ...+++-.|.|+|+.++++..|
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 9999998877776444455556777754 6889999999999999998777777764 5689999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecC---------------------------------------------------CCCceeEE--
Q 019006 206 NDVKVWDLRKGEVSMTLQG---------------------------------------------------HQDMITGM-- 232 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~i~~v-- 232 (347)
|+|++||+.++++...+.. +...+.++
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 9999999999876654430 01111222
Q ss_pred -EECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 233 -SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 233 -~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
.++..-...|+|+.||+|.|||+........| .+...|.++.|-+ ..+|++++.+|.|+.||.++|+++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 22333356788999999999998754322111 2245699999999 889999999999999999999999
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.||...|.+++++|++++++|+|.|++.+||++
T Consensus 362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999999999999999974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=250.85 Aligned_cols=271 Identities=22% Similarity=0.409 Sum_probs=230.1
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeE
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNS 147 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~ 147 (347)
-+|+++|.|.+|++|.... ......++.....|..+...|+++.|++++. ..||+||++++. .+.++..|...|..
T Consensus 11 viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 4799999999999999853 3445566666778999999999998888764 679999998865 47788899899998
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cCCC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QGHQ 226 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~ 226 (347)
+.|..++ ...++|++||+++|||++...+-+.+.+...|+++..+|....|++|..+|.|++||++...+...+ ....
T Consensus 89 VgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 8887665 5889999999999999999777777888899999999999999999999999999999887555443 3344
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC--CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA--PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
..|.++...|+|.+++.+...|...+|++-... ....++..++.| ...+.+|.+|||+++||++|.|.+++||+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah----~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH----NGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc----cceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 679999999999999999999999999986421 111233334444 46789999999999999999999999999
Q ss_pred CCCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 305 TTSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 305 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.. ++...+.+|...+++.+|+.++.+|+|+|.|+.+++|++
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 9887 666789999999999999999999999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=272.26 Aligned_cols=286 Identities=32% Similarity=0.588 Sum_probs=250.3
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.+|.+.|.++.|+|++++|++++.||.+++|+.... .....+..|...+..+.|++++++|++++.||.+++|++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 356799999999999999999999999999999999643 3455678899999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+++....+..+...+..+.+.+. ..++++++.++.+.+||+++.+....+. +...+.++.|+|++.++++++.++.|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 88778888888878888888776 4678888889999999999777666665 556799999999988888888899999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||++.++....+..|...+.++.|+|+++.+++++.|+.+++||++.. .....+..+ ...+..+.|+|++.
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~----~~~i~~~~~~~~~~ 232 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGH----ENGVNSVAFSPDGY 232 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----ceecchhhc----CCceEEEEEcCCCc
Confidence 9999988888888888889999999999999999999999999998742 223333332 34788999999999
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++++++.||.|++||..+++.+..+.+|...|..++|+|+++.+++++.|+.|++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999899999999999999999999999999999999999999999999999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=273.20 Aligned_cols=284 Identities=26% Similarity=0.447 Sum_probs=242.0
Q ss_pred ecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCC---eeeEEEe----------CcccceeEEEEcCCCCEEEEe
Q 019006 53 LTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDC---KNFMVLK----------GHKNAILDLHWTTDGSQIISA 118 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~---~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~ 118 (347)
+..|+.+|++.+|+|... +||+|+.|-+.++|++..+. .....++ .....|++++|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 344999999999999776 99999999999999986311 1100111 123579999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCce-EEEEEcCCCC
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-TAVSFSDASD 197 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~ 197 (347)
+.||.+++|+. .|.++..+..|.++|.++.+...+ .++++++.|+++.+||..++...+.++.+... ..+.|-. ..
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~ 330 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-ND 330 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cc
Confidence 99999999995 467788899999999999998876 57889999999999999988887777654433 5566653 46
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.|++.+.|+.|+++-+....+..++.+|.+.|.+|.|+|.+..|++++.|++++||.... ..++..+..|. .
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~----~~~~~~l~~Hs----k 402 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ----SNSVHDLQAHS----K 402 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC----Ccchhhhhhhc----c
Confidence 789999999999999988889999999999999999999999999999999999999763 34555565553 5
Q ss_pred ceEEEEECCCCC---------EEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 278 NLLKCGWSPDGS---------KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~---------~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|..+.|+|+|. .|++++.|++|++||+..+.++..+..|..+|.+++|+|+++++|+|+.||.|+||.+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 688899998764 6999999999999999999999999999999999999999999999999999999974
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=249.92 Aligned_cols=283 Identities=22% Similarity=0.418 Sum_probs=234.7
Q ss_pred eeEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccC-CCeeeE--EEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 50 IMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHG-DCKNFM--VLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~-~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
+..++||.+.|..++|+|- |.+|||+|.|+.|++|+..+ +.-... .-.+|+..|.+++|+|.|++|+++|.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4678899999999999998 89999999999999999863 211111 2247999999999999999999999999999
Q ss_pred EEECCCC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce---eec-CCCCceEEEEEcCCCCeE
Q 019006 126 AWDVETG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI---QTF-PDKYQITAVSFSDASDKI 199 (347)
Q Consensus 126 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~~~~l 199 (347)
||.-..+ +.+..+.+|...|.+++++.++ .+|++++.|+.+.+|.+..+... ..+ +|...|..+.|+|....|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 9976543 5678899999999999998876 58999999999999998855433 333 455679999999999999
Q ss_pred EEEecCCcEEEEeCC---CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 200 YTGGIDNDVKVWDLR---KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
++++.|++|++|+-. .-.+..++.+|...|.+++|++.|..|++++.|++++||-... .+. ..+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---------~~~---~~~s 233 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---------DLS---GMHS 233 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc---------Ccc---hhcc
Confidence 999999999999765 2357889999999999999999999999999999999997541 111 1124
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCc------eee-EEecCCccCeeeEEEcCC-CCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR------RIL-YKLPGHTGSVNESVFHAT-EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~------~~~-~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~i~~~ 347 (347)
..+..++|. ...|++++.|+.|++|.-... +++ .+-..|+..|+.+.|.|. ..+|+++|.||.|++|++
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 578888888 568999999999999964432 122 245689999999999995 679999999999999975
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=263.65 Aligned_cols=287 Identities=24% Similarity=0.429 Sum_probs=250.7
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+....+.||.+-|.++++.|-.+++++|+.|++++|||+.. .+....+.||...|..+++|+-..|+++++.|++|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 34567889999999999999999999999999999999964 45667889999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|++..+.++.+.+|-+.|.++..+|.. ..+++|+.|.++++||++++..+..+. |...|..+.+.|....+++|+.|+
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 999999999999999999988888765 578999999999999999999998886 668899999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+|++||++.++...++..|+..+.+++.+|....+++++.| .|+-|++... ..+..+.+| ...+.+++.+.
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g----~f~~nlsgh----~~iintl~~ns 370 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG----EFLQNLSGH----NAIINTLSVNS 370 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc----chhhccccc----cceeeeeeecc
Confidence 99999999999999999999999999999999999999988 6999998643 233334444 34577777776
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEe-----cC---CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKL-----PG---HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~---h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|| ++++|+++|.+.+||.+++-..+++ +| .+..|...+|...+..|+||..|.+|.+|+
T Consensus 371 D~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 65 7789999999999999998665544 12 235688999999999999999999999985
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=247.03 Aligned_cols=266 Identities=21% Similarity=0.426 Sum_probs=225.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
+++-..+.|+.+...|++..||+++. -.|++||+.... .+...+.+|+..|+++.|..+|+.++|||.||+++|||++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 34444678999999999999998887 479999997543 3778899999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CC-CCceEEEEEcCCCCeEEEEecCCcE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PD-KYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.... .....+.+.|+++..++... -|++|..+|.|++||+....+...+ +. ...+.++...|+|.+++.+...|..
T Consensus 114 ~~~~-qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 114 SLSC-QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred Cccc-chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 8444 34445778999999988765 4678999999999999887554443 33 3578999999999999999999999
Q ss_pred EEEeCCCC------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 209 KVWDLRKG------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 209 ~iwd~~~~------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
++|++-.. +++..++.|+..+....+||++++|+++|.|.+++||+...+ .+.-..+.+| ...++.|
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh----~rWvWdc 264 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGH----QRWVWDC 264 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecC----CceEEee
Confidence 99998654 345678899999999999999999999999999999998764 1223345555 3689999
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+||.||+||++|+.|+.+++||+..++.+..+.+|.....+++.+
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999999999999888887764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=305.23 Aligned_cols=289 Identities=22% Similarity=0.368 Sum_probs=240.4
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-------eeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-------KNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTL 124 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i 124 (347)
+.+|.+.|.+++|+|+|++||+|+.|+.|++|+..... .....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34589999999999999999999999999999974210 0112233 346789999987 47899999999999
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEc-CCCCeEEEEe
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS-DASDKIYTGG 203 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 203 (347)
++||+.+++.+..+..|...|.++.+++.++.++++|+.|++|++||++++..+..+.....+.++.|+ +++..+++|+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999999888999999999999998766779999999999999999988887777766788999995 5688999999
Q ss_pred cCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC--cCceeEEEeccccccccceE
Q 019006 204 IDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP--QNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 204 ~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 280 (347)
.||.|++||++..+ ....+.+|...|.++.|. ++.++++++.|++|++||++.... ...++..+.+|. ..+.
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~----~~i~ 712 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT----NVKN 712 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC----CCee
Confidence 99999999998765 456778999999999997 688999999999999999974321 123455666653 4577
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE-------------ecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK-------------LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.++|+|++.+|++|+.||.|++|+......+.. ...|...|.+++|+|++..|++++.||+|+|||+
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 889999999999999999999999765543321 2345667999999999999999999999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=250.40 Aligned_cols=251 Identities=27% Similarity=0.472 Sum_probs=208.6
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+...|.||...|..+..+++|++.++++.|+++++||+.+. +....+.+|...|.+++|++|.++|++|+.|.+|++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 467789999999999999999999999999999999999754 6678899999999999999999999999999999999
Q ss_pred ECCCCceeeeeecc--CcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEe
Q 019006 128 DVETGKQIKKMAEH--NSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 128 d~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 203 (347)
++..... .++..+ ...|.+++|+|.. ..++++++.|+++++||+++.+....+.. ..-++.+.++|||...++|+
T Consensus 133 nt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 133 NTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred eecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 9875433 333333 6789999999875 67899999999999999998887777654 46799999999999999999
Q ss_pred cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----cccc
Q 019006 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----FEKN 278 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~ 278 (347)
.||.+.+||++.++....+. |...|.+++|+|+.-. ++...+..|+|||+.... ++..++..... -...
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~----~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKA----VVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeEEecCCcee-EeeccCCceEEEeccchh----hhhhccccccccccccCCcE
Confidence 99999999999998876664 6788999999997544 445556679999987532 22222211111 1235
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.+++|++||+.|++|-.|+.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7889999999999999999999999764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=244.02 Aligned_cols=279 Identities=29% Similarity=0.479 Sum_probs=242.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+..|+++|.++.|+-+|++.++++.|++|++||... ...+....+|...|..++.+.|...+++|+.|+.+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 456789999999999999999999999999999999863 4567788999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC--CceeecCC-CCceEEEEEcCCCCeEEEEecCC
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR--GAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
++|+.++.+..|.+.|+.+.++... ..+++|+.|.++++||-+.. ++++.+.. ...|.++... +..+++|+.||
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999998764 58999999999999998754 56676643 4568888775 46799999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+++.||+|.|.....+.+| +|++++|+++++..+.++.|+++++.|-. .++.++.+.+|.. ...-..++++.
T Consensus 166 tvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~----tGklL~sYkGhkn--~eykldc~l~q 237 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKE----TGKLLKSYKGHKN--MEYKLDCCLNQ 237 (307)
T ss_pred cEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccc----hhHHHHHhccccc--ceeeeeeeecc
Confidence 9999999999877666664 79999999999999999999999999965 4556677777753 24456778899
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC-eeeEEEcCCCCEEEEecCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS-VNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D~ 340 (347)
....+++||.||.|++||+.....+.+++.|+.. |.++.+||....++++...+
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 9999999999999999999999999999999888 79999999998777766544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=278.49 Aligned_cols=285 Identities=22% Similarity=0.400 Sum_probs=251.8
Q ss_pred EecCccccEEEEEE-CCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKF-NPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~-~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.|..+.|..|.| .|+.++||++++.+.+++|++.+. ....+.||+..|.++....+|.+|+||+.|.++++|.++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 35688899999997 578899999999999999988653 334789999999999965677899999999999999884
Q ss_pred CCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce----e------ecCCCCceEEEEEcCCC
Q 019006 131 TGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI----Q------TFPDKYQITAVSFSDAS 196 (347)
Q Consensus 131 ~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----~------~~~~~~~v~~~~~~~~~ 196 (347)
++. .+....+|...+..++.+..+..+|+++|.|+++++|++...+.. . ...|+..|++++++|..
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 432 234456788888888888888889999999999999999762211 1 12356789999999999
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
..+++|+.|.+.++|++........+.+|+..|.++.|+|..+.++|++.|++|+||.+.+ ..|.+.+.+|.
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~----fSClkT~eGH~---- 547 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST----FSCLKTFEGHT---- 547 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc----ceeeeeecCcc----
Confidence 9999999999999999999999999999999999999999999999999999999999985 46888999885
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..|.++.|-.+|..|++++.||.|++|+..+++++..+++|...|+.++-+|...+++|++.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 5789999999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=259.75 Aligned_cols=286 Identities=23% Similarity=0.415 Sum_probs=229.0
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.++.|..-|++++|+|||.++|+++.||++++||-. .......+. +|++.|.++.|+||+.+++|++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 456799999999999999999999999999999964 334455565 8999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCc---ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 129 VETGKQIKKMAEHNS---FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.+.+.++++..... ....|.+- ...|++.+.+|+|.+++.....+...+. |...|+++..++++.++++|+.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 999988888765433 11223332 3468899999999999998777666654 5568999999999999999999
Q ss_pred CCcEEEEeCCCCceE-----------EE----------------------------------------------------
Q 019006 205 DNDVKVWDLRKGEVS-----------MT---------------------------------------------------- 221 (347)
Q Consensus 205 dg~i~iwd~~~~~~~-----------~~---------------------------------------------------- 221 (347)
||.|.-||..++..- ..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 999999998654210 00
Q ss_pred ----------ecCCC--------CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 222 ----------LQGHQ--------DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 222 ----------~~~~~--------~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
++.+. -...+++++|++..++.|+.|+.+++|.+....... ...... ....+..++
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~----h~a~iT~va 494 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE--EAKLLE----HRAAITDVA 494 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc--eeeeec----ccCCceEEE
Confidence 00000 013557889999999999999999999887432211 111222 246899999
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeE-EecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILY-KLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
||||+.+||+|...+.+.+||+.+++... ++.-|...|++++|+|++.++||+|.|-.|+||++
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 99999999999999999999999887643 45569999999999999999999999999999975
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=241.69 Aligned_cols=285 Identities=21% Similarity=0.407 Sum_probs=245.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 128 (347)
+.+++|...|.+|+|+.+|..||+|+.|+++.+|+++.... .-....+|.+.|-.++|+| ..+.+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34679999999999999999999999999999999975421 1124578999999999987 567899999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+..+++...+......+. .+++|++ .+++.++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 999999888766655554 4555665 47888999999999999999988888888899999999888888888888999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.|.....-+.+.++++|...-.+|.|+|+|+|+|+|+.|..+.+||+.. ..|.+.+..+ +=+|..+.||.||
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~isRl----dwpVRTlSFS~dg 243 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCISRL----DWPVRTLSFSHDG 243 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH----hhhheeeccc----cCceEEEEeccCc
Confidence 9999998999999999999899999999999999999999999999874 3455555443 3468999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC---------CcEEeec
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD---------KQIYLGE 346 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---------~~i~i~~ 346 (347)
++||+||.|..|-|=++++|..+.+++ +.++...|+|||..++||.+..| |.|+|+.
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 999999999999999999999999886 68899999999999999988865 5667664
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=270.20 Aligned_cols=287 Identities=24% Similarity=0.474 Sum_probs=244.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCC-CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHD-RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d-~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+.--+..|..++|+..|.+||.|+.. |.+.+|++..+ .-+...++|...+++++++|||.+|+||+.||.|+|||.
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 3344445678899999999999998764 88999999654 334556799999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--CCceEEEEEcCCCCeEEEEecCC-
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDASDKIYTGGIDN- 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg- 206 (347)
.++-+..+|..|.+.|..+.+...+ +.+++.+-||+++.||+......+++.. ..+..|++.+|.|..+.+|+.|.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 9999999999999999999998775 5788999999999999998888877754 45789999999999999999886
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|++|++++|+..-.+.+|.++|.+++|+|++..|++++.|.+|++||+-.... .+..++ +...+..++|+|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~---~vEtl~-----i~sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG---TVETLE-----IRSDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc---eeeeEe-----eccceeEEEEcC
Confidence 699999999999999999999999999999999999999999999999864322 233332 235688999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEec--------------------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLP--------------------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
||+.|++++.||.|.+||...+..+..+. +..+..+.+.+++|+..|.++|....|+|.+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999999999999999987655443221 1235688999999999999999999999987
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 611 v 611 (893)
T KOG0291|consen 611 V 611 (893)
T ss_pred C
Confidence 4
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=281.98 Aligned_cols=270 Identities=21% Similarity=0.409 Sum_probs=234.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
...+.|..|++++.+||.|-.|..|++|.+... .+..+++ ..+. ..+=+.+.|-.+.+.|-......+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~--kl~~lk~-------~~~l---~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK--KLKKLKD-------ASDL---SNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh--hhccccc-------hhhh---ccccccccchhhhhccccCCceeE
Confidence 457999999999999999999999999998531 2222222 1111 122334555557777777777777
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
.+.+|.+.|..+.++|+. .+|++++.|+++|+|.+.+...+..+. |..+|..+.|+|-|.+|++++.|++.++|....
T Consensus 446 ~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 799999999999999876 578999999999999999888777665 457899999999999999999999999999998
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
......+.+|...|.|+.|+|+.+|+++||.|.++++||+.+ +..++.+.+|. ..|.+++|||+|++|++|+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~----G~~VRiF~GH~----~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST----GNSVRIFTGHK----GPVTALAFSPCGRYLASGD 596 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC----CcEEEEecCCC----CceEEEEEcCCCceEeecc
Confidence 888899999999999999999999999999999999999974 56688888874 6899999999999999999
Q ss_pred CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.||.|.+||+.+++++..+.+|.+.|.++.|+.++..||++|.|.+|++||+
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=254.73 Aligned_cols=291 Identities=22% Similarity=0.320 Sum_probs=246.5
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRA 126 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~i 126 (347)
...+.+|...++..+|+|.|.++|+|...|+|++|+..... .....++.-.++|.+++|+.++++|+..+.. +..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45678999999999999999999999999999999986532 2223455667899999999999999887643 33444
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+-.++|..+.++.+|...+++|.+-+..+..+++|++|+++.+|+-.--+...++. |..-|.++.|+|++..+++.+.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 44456777888999999999999999988999999999999999855444333443 34569999999999999999999
Q ss_pred CcEEEEeCCCCceEEEec---CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ---GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|++.+||=.+++.+..+. +|++.|.+++|+||+..++|++.|.+++|||+.. ..+++.+..... ..+....|
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~----~slv~t~~~~~~-v~dqqvG~ 286 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST----NSLVSTWPMGST-VEDQQVGC 286 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec----cceEEEeecCCc-hhceEEEE
Confidence 999999999999999887 8999999999999999999999999999999974 355555544332 45566677
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-|. ...|++-|.+|.|.+++......+..+.||...|+.+..+|+++.|.|++.||.|.-|++
T Consensus 287 lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 287 LWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 776 668999999999999999999999999999999999999999999999999999999985
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=239.75 Aligned_cols=284 Identities=24% Similarity=0.364 Sum_probs=232.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..++||+.+++-++|+.+|.+|++++.|.+..+|-.. +.+.+....||+++|++++.+-+.++++||+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 3688999999999999999999999999999999763 334567889999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEE----cCCCceEEEeCCC-------CCceeecC-CCCceEEEEEcCCCCe
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG----SDDGTAKLWDMRQ-------RGAIQTFP-DKYQITAVSFSDASDK 198 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~ 198 (347)
+|+++..+. -+..|..+.++..+...+++. +..+.|.++|++. ..+...++ ....++.+.|.|.+++
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 999988775 345677788877765333322 2346789999883 33344443 4578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+++|..||.|.+||+++++. +...+.|...|+.|.++++..+++|++.|.+-++||++.. .+++.+.. +.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~t-----e~ 232 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYTT-----ER 232 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEeee-----cc
Confidence 99999999999999999854 4455789899999999999999999999999999999854 34444433 35
Q ss_pred ceEEEEECCCCCEEEEeeCCC--------------eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 278 NLLKCGWSPDGSKVTAGSSDR--------------MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
++.+.+++|-...++.|+... ..++|++-..+.+.+++||-++|+.++|||+++..+|+++||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 788999999877777765421 123445444566778999999999999999999999999999999
Q ss_pred ee
Q 019006 344 LG 345 (347)
Q Consensus 344 i~ 345 (347)
+.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 85
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=260.01 Aligned_cols=288 Identities=27% Similarity=0.421 Sum_probs=245.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..+..|.+.|..+.|-++...|++|+.|..|++|+..+.. .....+.|..+.|+++.|.+++.++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999999999999999999999987543 234567788889999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
...+...++.+|...|....+..... .+++|+.|.+|++||+....+..+.-....+..++.+ ...+++|..|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 99999999999999998887765543 3899999999999999987777766555566666665 45788999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||.++.....+...+. .|+++..++++..+++++.|.++.+.|++.... ...+......-......+.|||++.
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI----~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI----RQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE----EEEeeccccccccccceeEECCCCc
Confidence 99999999888888765 899999999999999999999999999986432 2233322222223577889999999
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++||.||.|+||++.++++..++..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999998876544 599999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=235.76 Aligned_cols=244 Identities=26% Similarity=0.487 Sum_probs=217.0
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
.+.+++|...|.++.|++|.++|++++.||.+.|||.-+...+..+......|..|+++|.+ ++++.|+-|+..-||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEec
Confidence 36799999999999999999999999999999999998888888888889999999999886 58899999999999999
Q ss_pred CCCC------ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEE
Q 019006 173 RQRG------AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTN 244 (347)
Q Consensus 173 ~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~ 244 (347)
..+. ..+.+. |..-+.+..|-+ ...+++++.|.+.-+||+++++....+.+|.+.|.+++++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 8541 223333 445678888876 67899999999999999999999999999999999999999 99999999
Q ss_pred cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--CccCee
Q 019006 245 GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--HTGSVN 322 (347)
Q Consensus 245 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--h~~~v~ 322 (347)
+-|+..++||+|. ..+++.+.+|. ..|.++.|.|+|.-+++||+|++.++||++..+.+..+.. --..|+
T Consensus 206 ~cD~~aklWD~R~----~~c~qtF~ghe----sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 206 GCDKSAKLWDVRS----GQCVQTFEGHE----SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred ccccceeeeeccC----cceeEeecccc----cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 9999999999994 47888998885 5688999999999999999999999999999887766642 234789
Q ss_pred eEEEcCCCCEEEEecCCCcEEeec
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++|+..+++|.++..|.++.+||
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eEEEcccccEEEeeecCCceeEee
Confidence 999999999999999999999998
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=263.52 Aligned_cols=319 Identities=23% Similarity=0.360 Sum_probs=267.0
Q ss_pred ccccccceeeeccCCCccccCCCCCCCCCCCCCCCccCCCCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEec
Q 019006 7 QRENENALSTVSARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV 86 (347)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~ 86 (347)
+-..++.+-.+..+..+|-..+++.+..|. +.-.....+.||+..|+++.++.+...++||+. +.+++|+.
T Consensus 331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~--------~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~ 401 (888)
T KOG0306|consen 331 SGGTENTLVLLANNTVEWYSLENSGKTSPE--------ADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNR 401 (888)
T ss_pred cCCcceeEEEeecCceEEEEeccCCCCCcc--------ccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEc
Confidence 334446666688888888887774433321 111122356799999999999999888888766 67999998
Q ss_pred cCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc
Q 019006 87 HGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166 (347)
Q Consensus 87 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~ 166 (347)
.. .+..+.+.. ..+.+..|-|.++++++|...|.+.+||+.+...+..+..|.+.++++...+++. -+++|+.|.+
T Consensus 402 ~t-~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDkt 477 (888)
T KOG0306|consen 402 DT-LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKT 477 (888)
T ss_pred cC-cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcE
Confidence 63 233444433 3788889999999999999999999999999999989999999999999888764 5789999999
Q ss_pred eEEEeCCC-------C-Cce-----eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 167 AKLWDMRQ-------R-GAI-----QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 167 i~iwd~~~-------~-~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
|++||..- . +.+ ..+.-...|.|+.++|++++++++--|+++++|-+.+-+...++.||.-+|.+|.
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 99999641 1 111 1223356799999999999999999999999999999999999999999999999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.+||++.++|||.|..|++|-+. -+.|.+.+-+| .+.|.++.|-|+..++.++|.|+.|+-||...-+.++.
T Consensus 558 IS~DSklivTgSADKnVKiWGLd----FGDCHKS~fAH----dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~ 629 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLD----FGDCHKSFFAH----DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK 629 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccc----cchhhhhhhcc----cCceeEEEEcccceeEEEecCcceEEeechhhhhhhee
Confidence 99999999999999999999876 35666666665 36789999999999999999999999999999999999
Q ss_pred ecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 314 LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 314 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++|..+|++++.+|+|.+++|+|.|.+|++|+
T Consensus 630 L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 630 LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 999999999999999999999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=255.52 Aligned_cols=244 Identities=28% Similarity=0.465 Sum_probs=213.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+++|...|++|.|+++|.+++||+.+|.|++|+..- .....+.+|. .+|.+++|+|++..+++|+.||+|+|||..
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 4678999999999999999999999999999998743 2334455555 899999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
..+..+.+.+|.-.|.++.++|.. .++++|+.|..|++||.+++.++.++ .|+..|..+.|.+++++|++++.|..++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred CCchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 888888889999999999998875 48999999999999999999988776 4677899999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
+||+++-+.++.+++|+..++++.|+|- ...|.+||.||.|..|.+...++. .......+..|++++|+|=|
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccccc
Confidence 9999988888999999999999999994 567888999999999998632222 11122335689999999999
Q ss_pred CEEEEeeCCCeEEEEeC
Q 019006 289 SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~ 305 (347)
..|++|+.|..+++|.-
T Consensus 363 hil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 363 HILATGSNDRTVRFWTR 379 (464)
T ss_pred eeEeecCCCcceeeecc
Confidence 99999999999999964
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=253.59 Aligned_cols=291 Identities=20% Similarity=0.365 Sum_probs=248.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC----------------------Cee------eE-----EE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD----------------------CKN------FM-----VL 96 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~----------------------~~~------~~-----~~ 96 (347)
...+.||.++|.+.-|..+...|.+-+.||.+.+|..... .++ .. .+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 3567899999999999999999999999999999987510 000 01 12
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
......|++.+|++..+.|+++-..|...+|.+-....+..+......+.++.++..+.-+.+.++.-|.+.+|+.....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 22336799999999999999999999999999998888888887778888888887776555555566899999988776
Q ss_pred ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
-+...+ |-..+++++++|||..+++|+.||+|++||..++-+..++..|+..|+.+.|+..++.+++.+.||+|+.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 655544 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
..+ ++.+++... -.....+++..|.|..+..|+.|.. |+||++++|+++-.+.||+++|.+++|+|.+..|+
T Consensus 422 kRY----rNfRTft~P---~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 422 KRY----RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred ccc----ceeeeecCC---CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 854 334444332 2346778888999999999999875 99999999999999999999999999999999999
Q ss_pred EecCCCcEEeecC
Q 019006 335 SCSSDKQIYLGEI 347 (347)
Q Consensus 335 s~s~D~~i~i~~~ 347 (347)
|+|-|.+|++|++
T Consensus 495 S~SWDkTVRiW~i 507 (893)
T KOG0291|consen 495 SGSWDKTVRIWDI 507 (893)
T ss_pred eccccceEEEEEe
Confidence 9999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=263.68 Aligned_cols=206 Identities=30% Similarity=0.552 Sum_probs=192.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.||+++|+.++|+|+.++|++++.|+++++|.+.. .......+||..+|+++.|+|-|-++||+|.|++.++|..
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 456889999999999999999999999999999999964 3455677899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
...+.++.+.+|.+-|.++.++|+. .++++||.|.++++||+.++..++.|. |...|.+++|+|+|.+|++|+.||.|
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 9989999999999999999998875 588999999999999999999998885 56789999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
.+||+.+++.+..+.+|++.|.++.|+.+|..|+++|.|++|++||+..
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=258.35 Aligned_cols=293 Identities=23% Similarity=0.424 Sum_probs=223.1
Q ss_pred EecC-ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEEecCCCeEEEEE
Q 019006 52 LLTG-HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~-h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd 128 (347)
.+.+ |+++|..|+|+|.+.+||+||.|+.+++||+.+. .....++||.+.|.++.|+|+-. .|++|+.|+++++||
T Consensus 99 swKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred hHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 3445 9999999999999999999999999999999643 45678999999999999999754 488999999999999
Q ss_pred CCCCce-eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC-------------
Q 019006 129 VETGKQ-IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD------------- 194 (347)
Q Consensus 129 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------- 194 (347)
+.+... +..+..|.+.+.++.+.+++ ..+++++.|..+.+||+.+-+.....+....+-++.+-+
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 986544 67788899999999998875 457789999999999986544333333322233333322
Q ss_pred ------------------------------------------------------------------------------CC
Q 019006 195 ------------------------------------------------------------------------------AS 196 (347)
Q Consensus 195 ------------------------------------------------------------------------------~~ 196 (347)
..
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 23
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce------------
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC------------ 264 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~------------ 264 (347)
.+++++++.+.+|+|++.+..+. .+.+|.+.|.+++...+|-+|+|++.|+++++|.+.+......+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 34444444445555544443332 45688888988885566778899999999999966321111000
Q ss_pred --------------------eEEE--ec--------------cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 265 --------------------VKIL--EG--------------HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 265 --------------------~~~~--~~--------------~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
++.. .. ....++..|.+++++|+.+++||||.|++.++|+++..
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 0000 00 11123457889999999999999999999999999999
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+++..+.||...|++|.|+|..+.|||+|.|++|+||.|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 999999999999999999999999999999999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=241.65 Aligned_cols=245 Identities=26% Similarity=0.561 Sum_probs=217.6
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|+||+++|..++|+..|..||+++.|-.+++|+..+.......+.+|...|.+++|-|-|++|++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 47899999999999999999999999999999998654444556789999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCC---------------
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA--------------- 195 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--------------- 195 (347)
+.++..+..|...+..+....++ .++++++.|.++++|-+.++++...+. ++..+-+++|.|.
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 99999999999999988887665 689999999999999999887665553 4567777777652
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+.++.+++.|++|++||+.++.+++++.+|.+.|.+++|+|.|+||+++..|+++++||++. .+|.+.++.|.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~----~~cmk~~~ah~--- 376 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN----LQCMKTLEAHE--- 376 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc----ceeeeccCCCc---
Confidence 24788999999999999999999999999999999999999999999999999999999984 56777777664
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
..+.+++|+.+-.++++|+-|..+++|..
T Consensus 377 -hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 -HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -ceeEEEecCCCCceEEeccccceeeeeec
Confidence 35889999999999999999999999964
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=238.26 Aligned_cols=246 Identities=22% Similarity=0.428 Sum_probs=222.3
Q ss_pred CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
.+....+.+|.+-|.++++.|....+++|+.|++++|||+.++++..++.+|...+..+++++.. +++++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEE
Confidence 34556789999999999999999999999999999999999999999999999999999888775 47889999999999
Q ss_pred EeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
||+...+.++.+. |-..|.+++.+|.-..+++|+.|.++++||+|+...+..+.+|..+|.++.+.|.+..+++|+.|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 9999999888764 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+|++||++. ++....+..| +..+.+++.+|+...+|+++.| .|+-|++..++.+..+.+|..-|+.++.+.
T Consensus 300 tvrlWDl~a----gkt~~tlt~h----kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 300 TVRLWDLRA----GKTMITLTHH----KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred eEEEeeecc----CceeEeeecc----cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence 999999984 3444445444 4578899999999999999998 699999999999999999999999999998
Q ss_pred CCCEEEEecCCCcEEeec
Q 019006 329 TEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~ 346 (347)
|+ .+.+|+.+|.+..||
T Consensus 371 D~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred Cc-eEEEcCCceEEEEEe
Confidence 87 666999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=252.11 Aligned_cols=306 Identities=26% Similarity=0.435 Sum_probs=231.3
Q ss_pred CCCCCccCCCC--cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCE
Q 019006 37 PNGKQRTSSLE--SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ 114 (347)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 114 (347)
++|..+..+.. .+..++.||..+|+++.|...|..|||||.|+.|.+||+-++.. ...++||++.|+.+.|..+.+.
T Consensus 85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-l~rL~GHkd~iT~~~F~~~~~~ 163 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-LFRLRGHKDSITQALFLNGDSF 163 (888)
T ss_pred cCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-eEEeecchHHHhHHhccCCCeE
Confidence 56666666665 67788999999999999999999999999999999999986543 4578999999999999998899
Q ss_pred EEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC----------------------
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---------------------- 172 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~---------------------- 172 (347)
+++.|.|++|++||+++..+..+...|...++.++..+ +++++++.|..+++|++
T Consensus 164 lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 164 LVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred EEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence 99999999999999988766666666666665555543 34555555555555554
Q ss_pred --------------------------------------------------------------------------------
Q 019006 173 -------------------------------------------------------------------------------- 172 (347)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (347)
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 019006 173 -------------------------------------------------------------------------------- 172 (347)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (347)
T Consensus 321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn 400 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWN 400 (888)
T ss_pred hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEE
Confidence
Q ss_pred -CCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 173 -RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 173 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
.+.+++.+++.. -+.+..|-|.++++++|...|.+.+||+.+.....++++|.+.|++++.+||+..++|+|.|.+|+
T Consensus 401 ~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 401 RDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence 333333332222 222333334444444445555555555544444455678999999999999999999999999999
Q ss_pred EEeCCCCC----CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 252 IWDMRPYA----PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 252 ~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+||..-.. .+.+.++..........+.+.++.+||||++||++--|++++||-+++-+..-.+-||.-+|.++.++
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 99975211 11122222222223456789999999999999999999999999999988777888999999999999
Q ss_pred CCCCEEEEecCCCcEEeecC
Q 019006 328 ATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+.++++|||.|.+|+||.+
T Consensus 560 ~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred CCcCeEEeccCCCceEEecc
Confidence 99999999999999999964
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=242.86 Aligned_cols=268 Identities=27% Similarity=0.489 Sum_probs=224.6
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
....|+|+.+ |...+++|..|++|++||... ......+.||++.|.++.|. .+.|++|+.|.+|++||+++++.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 4568999987 577899999999999999853 34456788999999999996 458999999999999999999999
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..|...|..+.++. .++++++.|.++.+||+.....+.. ..|...|+.+.|+. +++++++.|.+|++|
T Consensus 271 ~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 99999988888777753 4899999999999999876543321 24566789888864 699999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
++.+++.+.++.+|+..|-|+.+ .++++++|+.|.+|++||+. .+.|+..+++|. +-+.++.| |.+.+
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~----~G~cLRvLeGHE----eLvRciRF--d~krI 413 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE----ELVRCIRF--DNKRI 413 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc----ccHHHHHHhchH----Hhhhheee--cCcee
Confidence 99999999999999988887766 58999999999999999987 467788888874 45666666 46799
Q ss_pred EEeeCCCeEEEEeCCCce---------eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 292 TAGSSDRMVYIWDTTSRR---------ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 292 ~sgs~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|..||+|++||+..+. ++..+-.|++.|..+-| +...+++++.|.+|.|||+
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 999999999999987653 23455678999998888 4568899999999999985
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=228.34 Aligned_cols=282 Identities=23% Similarity=0.369 Sum_probs=235.4
Q ss_pred EecCccccEEEEEECC---CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNP---AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~---~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
+-.||..+|..++|+| +|-+|++++.|+.-.+-+-+. ..=+..+.+|+++|++...+.+..+-++++.|=+.++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4569999999999985 889999999999876644321 122457899999999999998888889999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCCCCeEEEEecCC
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.-+|..+..+ .|...|..|++..+. +.+++|+.++.+++||+.+.. +...+ .+...|..+-|....+.+++.+.|+
T Consensus 88 a~tgdelhsf-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 88 AVTGDELHSF-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhh-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 9999888777 477888889988765 568899999999999987543 23333 3456788888888888999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+||+||.+++..+.+++- +..|+++.++++|++|.+ ...+.|++||...+.. ++.+ .+...|.+...+|
T Consensus 166 tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~----lKs~-----k~P~nV~SASL~P 234 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGL----LKSY-----KMPCNVESASLHP 234 (334)
T ss_pred ceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEE-ecCceeEEeccccccc----eeec-----cCccccccccccC
Confidence 999999999999888874 567999999999987655 5567899999875432 2222 2245678888999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+...+++|+.|..++.||..+++.+..+ .+|.++|-+|.|+|++...|++|+||+|+||..
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999999999999999999999998886 899999999999999999999999999999963
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=248.33 Aligned_cols=283 Identities=22% Similarity=0.406 Sum_probs=250.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+..|...|-++.|+|..++++++-..|.|.|||.+.+ .....+.-..-+|.+..|-+-.+.+++|+.|..||||+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 35568899999999999999999999999999998643 44555666677899999998889999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCC-CCceEEEEEcCC-CCeEEEEecCCcE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPD-KYQITAVSFSDA-SDKIYTGGIDNDV 208 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i 208 (347)
++.+..|..|..++.+++.+|.. ++++++|.|-+|++||-... .+.+++.. ..-|.+++|+|. .+.+++++-|++|
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred ceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 99999999999999999998876 57889999999999998754 45566654 467999999985 5689999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++|.+.+..+.+++++|...|+++.+-+. ..+|++|+.|.++++||.. ...|++++++|.+ .+..+.|+|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~----Nvs~v~fhp 237 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTN----NVSFVFFHP 237 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccc----cceEEEecC
Confidence 99999999999999999999999999774 4699999999999999986 4678999999875 467888999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.=..+++||.||++++|+..+-++...+...-+.|++++-++....++.|...|.|.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999888888877889999999999999999988888765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=244.46 Aligned_cols=290 Identities=23% Similarity=0.401 Sum_probs=232.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee---eEEEe-CcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN---FMVLK-GHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~---~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
..+.+|+..|.++++.|.|..|++||.|.+|++||..+.... +..+. .....|.+++|++.|+.|+..+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 468899999999999999999999999999999999764322 22222 23347899999999999999999999999
Q ss_pred EECCCCceee------------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeecCC------CCce
Q 019006 127 WDVETGKQIK------------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTFPD------KYQI 187 (347)
Q Consensus 127 wd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~------~~~v 187 (347)
+|-....... ..++|...+.+.+|+|.....|++++.||++++||+..-+ ..+.+.+ ...+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9955433322 2345777788889999999999999999999999987432 2333321 2458
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCce---EEEecCCCC--ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQD--MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
+.++|+++++.+|+|..||.|.+|+.++... ...-++|.. .|++|+|+++|++|++-|.|+++++||++...
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k--- 397 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK--- 397 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---
Confidence 8999999999999999999999999764321 223356766 89999999999999999999999999999653
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeC------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
.++....+... ...-..|+|||+.++|++|+. .|.+++||..+.+.++++.-....|..+.|||.-+.|..+
T Consensus 398 kpL~~~tgL~t--~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 KPLNVRTGLPT--PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred cchhhhcCCCc--cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 33333333222 234567899999999999975 5789999999999999998888899999999999999999
Q ss_pred cCCCcEEee
Q 019006 337 SSDKQIYLG 345 (347)
Q Consensus 337 s~D~~i~i~ 345 (347)
+.||++++.
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999998874
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=259.07 Aligned_cols=247 Identities=28% Similarity=0.500 Sum_probs=205.7
Q ss_pred ec-CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC--------------------------------C----------
Q 019006 53 LT-GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG--------------------------------D---------- 89 (347)
Q Consensus 53 ~~-~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~--------------------------------~---------- 89 (347)
+. +|.++|++|.|++||++||+||+|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 45 8999999999999999999999999999998754 0
Q ss_pred -----------------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCC
Q 019006 90 -----------------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR 152 (347)
Q Consensus 90 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 152 (347)
.+++..+.||.+.|.++.|+.+ .+|++++.|++||+|++...+++..| .|+.+|++++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 0123356799999999999976 58999999999999999988888776 5999999999999
Q ss_pred CCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--C-----
Q 019006 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--H----- 225 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~----- 225 (347)
.+..+|++|+-|+.++||++...+.+.-...+.-|++++|.|+|+..++|+.+|.+++|+.+..+.....+- |
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 999999999999999999999887776666667899999999999999999999999999987765544321 1
Q ss_pred -CCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 226 -QDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 226 -~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
...|+++.|.|... .+++.+.|..|+|+|.++. .++..+++... ...-.+..|+.||++|++|+.|..||+|
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n--~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRN--TSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccch----hhhhhhccccc--CCcceeeeEccCCCEEEEeecCceEEEE
Confidence 12799999998543 5778899999999999642 33445555432 2335677899999999999999999999
Q ss_pred eCCC
Q 019006 304 DTTS 307 (347)
Q Consensus 304 d~~~ 307 (347)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=234.26 Aligned_cols=285 Identities=21% Similarity=0.358 Sum_probs=243.3
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-Cee-e-----EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKN-F-----MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~-~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
|..+-+.|-.|+|||++|++|+.||.|.+||.... .+. + -.+--+.++|.++.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 56777899999999999999999999999997422 110 0 1233477899999999999999999999999999
Q ss_pred ECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecC
Q 019006 128 DVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+.+|.+++.|. .|...|.++.++.++. .+++++.|.++++--++.++.+..+..+ .-|+...|.++|..+++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999999999887 7888899999988765 5678999999999999999999888754 568999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecC--CCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQG--HQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|+|++|+.++.++..+++. ..-+|+++..-|. -..++.+...+++.+.++. +..++.+..... -.+...++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-----GQvVrsfsSGkR-EgGdFi~~ 443 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-----GQVVRSFSSGKR-EGGDFINA 443 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-----ceEEeeeccCCc-cCCceEEE
Confidence 9999999999998887754 3346788777774 4678888999999999875 344555432211 13567888
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+|.|.++.+.+.|+.+|.|.+.+|.+...++-|+..|..++.||..++|||=++||.+++|+
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=230.35 Aligned_cols=279 Identities=28% Similarity=0.461 Sum_probs=226.7
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC---CCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD---GSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|.+-|.++... +.++++|+.||.+++|+..+. ....+.||.++|.+++|... ...+++++.|.++++|-.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 477778777765 789999999999999999764 45678899999999998643 33699999999999998877
Q ss_pred Ccee----eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-------------------------Cceeec-
Q 019006 132 GKQI----KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-------------------------GAIQTF- 181 (347)
Q Consensus 132 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-------------------------~~~~~~- 181 (347)
+... ..-.+|...|.++...+++ ..+++|+.|.++++|+.... .++..+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 6432 2334788889888876665 57899999999999993211 111222
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.|...|.++.|++ ...+++++.|.+|+.||+.++....++.+. ..+++++.+|..++|++|+.|..+++||.|... .
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-G 334 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCC-C
Confidence 2446789999987 778999999999999999999988887764 568999999999999999999999999998653 2
Q ss_pred CceeEEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCCce-eeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSRR-ILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
......+-+|. ..|.++.|+|... .|++|+.|+++++||+++-. .++.+.+|...|.++.|+.. ..|+|||.|
T Consensus 335 s~v~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD 409 (423)
T KOG0313|consen 335 SVVSQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGAD 409 (423)
T ss_pred ceeEEeeecch----hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCc
Confidence 23344566663 4788999999765 57899999999999999877 99999999999999999755 488999999
Q ss_pred CcEEeec
Q 019006 340 KQIYLGE 346 (347)
Q Consensus 340 ~~i~i~~ 346 (347)
.+|+|++
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 9999975
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=247.67 Aligned_cols=242 Identities=20% Similarity=0.378 Sum_probs=216.9
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
+..++..|.++.++|....++++-.+|.|.|||.++...++.+....-+|.++.+.... +.+++|+.|..|++|+..+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecccc
Confidence 44588999999999999999999999999999999999999998888888887776554 57899999999999999999
Q ss_pred CceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEE
Q 019006 176 GAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCI 252 (347)
Q Consensus 176 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~ 252 (347)
..+..|. |..-+.+++.+|..+++++++.|-+|++||.+.. .+.+++.+|...|.+++|.| |.+.+++++-|++|++
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 8888875 4567999999999999999999999999998765 57789999999999999999 5789999999999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCC--CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD--GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
|.+.. ..+..++++|. ..|.++.|-+. -++|++|++|..|+|||..++.+++++.||...|..+.|||.-
T Consensus 168 Wslgs----~~~nfTl~gHe----kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 168 WSLGS----PHPNFTLEGHE----KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred EEcCC----CCCceeeeccc----cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 99874 34556788875 45778888664 4799999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEeec
Q 019006 331 PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~ 346 (347)
++++|||+||+++||.
T Consensus 240 piiisgsEDGTvriWh 255 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWN 255 (794)
T ss_pred cEEEEecCCccEEEec
Confidence 9999999999999994
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=219.76 Aligned_cols=278 Identities=26% Similarity=0.395 Sum_probs=224.6
Q ss_pred EEEEECCC-CCeEEEee-------CCCcEEEEeccCCCeeeEEE--eCcccceeEEEEcCCC-CEEEEecCCCeEEEEEC
Q 019006 61 YTMKFNPA-GTVIASGS-------HDRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV 129 (347)
Q Consensus 61 ~~v~~~~~-~~~l~s~~-------~d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~ 129 (347)
+++.|+|- .+.||++. ..|.++|-++.+.. -+..+ -.-.+.+.+++|+++. +.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57899983 33443332 35778888874221 11111 2235789999999864 57889999999999996
Q ss_pred CC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCC-CCeEEEEecCC
Q 019006 130 ET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDA-SDKIYTGGIDN 206 (347)
Q Consensus 130 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg 206 (347)
.. ...+..++.|...|.++.+.......+++++.|++|++|+....+.++++.. ...|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 3567888999999999999888888899999999999999998888888864 567999999987 56788999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++++||++.....+.+..|...|.++.|+. +.+.|+|++.|+.|+.||++..+ ..+..+.+|. -.|.++.||
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~----~AVRkvk~S 243 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHG----LAVRKVKFS 243 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCc----eEEEEEecC
Confidence 999999997666666999998999999987 45688999999999999999754 3456666664 468999999
Q ss_pred CC-CCEEEEeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCC-CEEEEecCCCcEEeec
Q 019006 286 PD-GSKVTAGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 286 ~~-g~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
|. ...||+++.|-++++||...+ ..+.+..-|++.+..+.|++-. .++|+++-|+.++||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 96 468899999999999999854 4556778899999999999864 5999999999999997
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=216.44 Aligned_cols=288 Identities=20% Similarity=0.295 Sum_probs=234.7
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC--CCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP--DKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd 128 (347)
..+..-.+.|++|.|+++|..|++++.|.++++||.. ..+....+..++..+..++|......++.++. |.+||.-+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3455567789999999999999999999999999996 34556677777788888999877777777765 88999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+.+.+.++.|.+|...|.+++.+|.+ ..+++++.|++|++||++..++...+... .-...+|+|.|-.+|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999999998877 67899999999999999966654443322 23457899999999999888899
Q ss_pred EEEeCCCCc--e--EEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 209 KVWDLRKGE--V--SMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 209 ~iwd~~~~~--~--~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
++||+|.-. + ...+. +.....+.|.|+|+|++++.+...+.+.+.|.-.+ .....+..+..... .-..+.
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G----~~~~tfs~~~~~~~-~~~~a~ 239 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG----TVKSTFSGYPNAGN-LPLSAT 239 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC----cEeeeEeeccCCCC-cceeEE
Confidence 999998642 2 22222 33456899999999999999999999999997643 34455555543322 236788
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+||++++++|+.||+|.+|+++++..+.++++ +.+.+.++.|+|...+++|+++.-..++.+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 999999999999999999999999999999998 788999999999999999998865555543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=252.51 Aligned_cols=244 Identities=28% Similarity=0.551 Sum_probs=214.4
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-C
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-R 175 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~ 175 (347)
|...|.++.|+++|+.+++++.|+.+++|+....+ ....+..|...|..+++++++. ++++++.|+++++||+.. +
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC
Confidence 37789999999999999999999999999997777 6667788999999999998865 899999999999999944 4
Q ss_pred Cceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 176 GAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 176 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..++.+ .|...|++++|+|+++.+++|+.|++|++||++++++...+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 566666 4667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC---eeeEEEcCCCC
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS---VNESVFHATEP 331 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~---v~~~~~~~~~~ 331 (347)
+...... +...+..+... . .+..+.|+|++.+|++++.|+.+++||+..+..+..+.+|... +....+++.++
T Consensus 317 ~~~~~~~--~~~~~~~~~~~-~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 317 LETGSKL--CLKLLSGAENS-A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCCCcee--eeecccCCCCC-C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 9864321 44455544321 2 6899999999999999999999999999999999999999874 55666788999
Q ss_pred EEEEecCCCcEEeecC
Q 019006 332 VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~~ 347 (347)
++.+++.|+.|++|++
T Consensus 393 ~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDS 408 (456)
T ss_pred eEEEEeCCceEEEEeC
Confidence 9999999999999985
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=252.38 Aligned_cols=285 Identities=19% Similarity=0.362 Sum_probs=244.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
++.-.+.|-.++|+|..+++.++--.|.|.+||.. .+..+..+..|.++|..++|+|....+++||.|-.|++|+..+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 44456789999999999999999999999999984 44556678899999999999999999999999999999999999
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
+++.++.+|-.+|..+.|++.- +.++++|.|.+|+||+-.+++++..+.+ ..-|.|..|+|....+++++-|.+||+|
T Consensus 84 rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 9999999999999999998765 5789999999999999999999988864 4679999999999999999999999999
Q ss_pred eCCC--------C---------------------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 212 DLRK--------G---------------------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 212 d~~~--------~---------------------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
|+.. + -..+.+.+|...|+-++|+|.-..+++|+.|+.|++|.+...+ .
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--a 240 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--A 240 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--c
Confidence 9742 1 0123567899899999999999999999999999999886321 1
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
-.+.+.++|. +.|.++-|+|...++++.|.|+.|+|||+.....+++++.-.+.-+.++-||..+++| ++.|+-+
T Consensus 241 WEvDtcrgH~----nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm 315 (1202)
T KOG0292|consen 241 WEVDTCRGHY----NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGM 315 (1202)
T ss_pred eeehhhhccc----CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCce
Confidence 1233445554 5688999999999999999999999999999999998877777889999999998885 4556556
Q ss_pred Eeec
Q 019006 343 YLGE 346 (347)
Q Consensus 343 ~i~~ 346 (347)
.+++
T Consensus 316 ~VFk 319 (1202)
T KOG0292|consen 316 IVFK 319 (1202)
T ss_pred EEEE
Confidence 5654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=216.96 Aligned_cols=243 Identities=21% Similarity=0.371 Sum_probs=213.2
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
....+..|.++|..+.|+.+|+|.++|+.|++|++|+...+.+++++..|...|.+.....++. .+++|+.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-ccccCCCCceEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999887776654 588999999999999
Q ss_pred CCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 172 MRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 172 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
+.+++.++.+. |..+|+.+.|+.+...+++|+.|..+++||.|+. ++++.+....+.|.++..+ +..+++|+.||
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 99999999886 4579999999999999999999999999999864 5666676667889888885 57899999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC--eeeEEE
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS--VNESVF 326 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~ 326 (347)
+++.||+|... ...- .+..+|.++.|++|++.++.++.|+.+++.|-.+|+++..+.||.+. =.+..+
T Consensus 166 tvRtydiR~G~----l~sD------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 166 TVRTYDIRKGT----LSSD------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred cEEEEEeecce----eehh------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 99999998532 2111 22357999999999999999999999999999999999999999764 357778
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.....++++|+||.|++||+
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeEEeccCCceEEEEEe
Confidence 888899999999999999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=250.26 Aligned_cols=277 Identities=27% Similarity=0.514 Sum_probs=238.9
Q ss_pred EecC-ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTG-HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~-h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.+ |...+.+..|. ...+++++.|++|++|+..........+.||.+.|.++++...+.+|++|+.|.++++||..
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 3444 45677788887 77899999999999999864433333489999999999999878899999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
++.+...+..|...+..+... +.++++|+.|.+|++|++.++..+..+. +...|.++..+ +..+++|+.|++|+
T Consensus 280 sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVK 354 (537)
T ss_pred CCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEE
Confidence 999999999999888766543 3578889999999999999999999888 78899999997 78999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||+.+++++.++.+|...|.++.+.+. +.+++|+.|++|++||++... +|+..+.+|... +. .....++
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~----v~--~l~~~~~ 424 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSL----VS--SLLLRDN 424 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcCCccc----cc--ccccccc
Confidence 9999999999999999999999988765 899999999999999998532 677777776532 22 2345789
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++++.|+.|++||..+++++..+.+ |.+.|..+++. .+.+++++.|+++++||+
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 999999999999999999999999998 67888888887 678999999999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=241.27 Aligned_cols=249 Identities=22% Similarity=0.368 Sum_probs=216.2
Q ss_pred eeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 91 KNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
+....+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|...|.+++++..+. .+++++.|+.++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-eeeeeecceeee
Confidence 34567899999999999999 888999999999999999876 788999999999999999988765 578999999999
Q ss_pred EEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 169 LWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
+||+++++++..+.....++|+.|+|++ +.|++|+.|+.|+.||+|+++.+.++..|-+.|..+.|-++|+++++.+.|
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee---eEEecCCc--cCee
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI---LYKLPGHT--GSVN 322 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~---~~~~~~h~--~~v~ 322 (347)
+.+++|+.+...+... ..... .-.+.++..+|.++++++-+.|+.|.+|.+...-. ..++.||. +.-.
T Consensus 364 ks~riWe~~~~v~ik~---i~~~~----~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKN---IADPE----MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ccEEEEEcCCCccchh---hcchh----hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 9999999874322111 11111 12456788899999999999999999998755332 24677884 6678
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.|||++.+|++|+.||.+++||.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeec
Confidence 9999999999999999999999983
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=240.74 Aligned_cols=269 Identities=16% Similarity=0.237 Sum_probs=211.9
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe------------eeEEEeCcccceeEEEEcC-CCCEEEEecCCC
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK------------NFMVLKGHKNAILDLHWTT-DGSQIISASPDK 122 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~------------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 122 (347)
|-..|.....++++..+++++.+.....|+..+... ....+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 444566666777877778888888877887543211 1124789999999999999 888999999999
Q ss_pred eEEEEECCCCc-------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC
Q 019006 123 TLRAWDVETGK-------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD 194 (347)
Q Consensus 123 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 194 (347)
+|++||+.++. .+..+..|...|..+.+++....++++++.|++|++||+.++..+..+. +...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997642 3556778999999999998877799999999999999999888777765 456799999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCCCCEEEEEc----CCCcEEEEeCCCCCCcCceeEEEe
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPDGSYLLTNG----MDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~t~~----~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
++..|++++.|+.|++||+++++....+.+|.+. +..+.|.+++..+++++ .|+.|++||++.... ......
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~ 255 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVD 255 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC---ceeEec
Confidence 9999999999999999999999988888888764 34678899888888765 478999999985432 222222
Q ss_pred ccccccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCC
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATE 330 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~ 330 (347)
.+. ...+....|++++.+|++|+ .|+.|++||+.+++++..... +...+..++|.|..
T Consensus 256 ~d~---~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 256 LDQ---SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred cCC---CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 111 23455667999999999887 599999999999988766544 34567888888864
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=217.33 Aligned_cols=278 Identities=19% Similarity=0.333 Sum_probs=223.8
Q ss_pred CccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 55 GHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 55 ~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
..++.|.+|+||| ...+++.+|.|++|++|++..... .......|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3568899999999 556778999999999999975321 22345678999999999999999999999999999999998
Q ss_pred ceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
++..+..|...|..|.+.+.. ...|++|+.|++|+.||.|...++.++....+++++..- ...++++..++.|.+|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEE
Confidence 567788899999988876543 257899999999999999999988888777788877654 4678889999999999
Q ss_pred eCCCCceEEEe-cC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--cc---cceEEEEE
Q 019006 212 DLRKGEVSMTL-QG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN--FE---KNLLKCGW 284 (347)
Q Consensus 212 d~~~~~~~~~~-~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~ 284 (347)
+++.+...... .. -+-.+++++..++....+.|+-+|.+.+..+....+. ..-.++.|... .. -.|.+++|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceEe
Confidence 99876432211 11 1234789998888888899999999999988764332 22234444321 11 25778999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 337 (347)
+|....|++.+.||...+||.+....+...+.|..+|.+..|+.+|.++|.+.
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999999999999888888899999999999999999998654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=226.95 Aligned_cols=244 Identities=31% Similarity=0.613 Sum_probs=212.1
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
.+++|..+|.+++|+|++++|++++.||.+++|++.+++....+..|...+..+.+.+.+ .++++++.++.+++||+..
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc
Confidence 456899999999999999999999999999999999887777777788777777777765 5788899999999999998
Q ss_pred CCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 175 RGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 175 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
++....+. +...+.++.|++++..+++++.++.|++||+++++....+..|...+.+++|+|++.++++++.|+.+++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 76666554 34579999999998888888889999999999888888888899999999999999999988889999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
|++.. .....+..+ ...+.++.|+|+++.|++++.|+.|++||...++.+..+..|...+..++|+|++.++
T Consensus 163 d~~~~----~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 163 DLRTG----KCVATLTGH----TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred Ecccc----ccceeEecC----ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 98743 223334433 3468899999999999999999999999999999988888999999999999999999
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
++++.|+.|++|++
T Consensus 235 ~~~~~~~~i~i~~~ 248 (289)
T cd00200 235 ASGSEDGTIRVWDL 248 (289)
T ss_pred EEEcCCCcEEEEEc
Confidence 99999999999985
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=210.77 Aligned_cols=245 Identities=20% Similarity=0.439 Sum_probs=196.0
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
.+|+..|++++|+|.|++||+|+.|.++.||.-. ++.+....+.||...|.+++|+++|++||+|+.|+.|-||.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 5899999999999999999999999999999764 334556789999999999999999999999999999999998754
Q ss_pred c---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---CceeecCC-CCceEEEEEcCCCCeEEEEecC
Q 019006 133 K---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---GAIQTFPD-KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 133 ~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 205 (347)
. ....+..|..-|..+.++|.. .+|++++.|.+|++|+-..+ .+.+++.. ...|.+++|++.|..|++++.|
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 3 455678899999999998865 58999999999999976522 34566654 4589999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++++||-..+.-. ..|...+..+.|. +..|++++.|+.|++|.-.. .+.......+......+...|.+++|+
T Consensus 217 ~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 217 GTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD-SPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred cceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecC-CCCCchHHHHHhhhcccccccceEEEc
Confidence 9999997653211 2366789999998 56899999999999997542 111111111111112234579999999
Q ss_pred CC-CCEEEEeeCCCeEEEEeCC
Q 019006 286 PD-GSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 286 ~~-g~~l~sgs~dg~i~vwd~~ 306 (347)
|. ..+|++|+.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 95 6899999999999999864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=246.16 Aligned_cols=249 Identities=22% Similarity=0.351 Sum_probs=200.0
Q ss_pred Ee-CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------------------------------------
Q 019006 96 LK-GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----------------------------------------- 133 (347)
Q Consensus 96 ~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------------------- 133 (347)
+. +|.++|++|.|++||+|||+||.|+.|+||.+...+
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 899999999999999999999999999999875400
Q ss_pred -------------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC
Q 019006 134 -------------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD 194 (347)
Q Consensus 134 -------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 194 (347)
.+..+.+|.+.|.++.|+.+ ++|++++.|.++++|++....++..|.|..-|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence 01123345556666666654 589999999999999999999999999999999999998
Q ss_pred C-CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc
Q 019006 195 A-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 195 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
. .++|++|+-|++||||++...+.+.....+ +.|++++|.|+|++.+.|+.+|..++|+....+......-.+.....
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 5 679999999999999999877766555444 78999999999999999999999999998864432221111111111
Q ss_pred ccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 274 NFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.....|+.+.|.|.. ..|++.+.|..|+|||.+...++.+++|+.. .-....|+.+++.|+++++|..||||++
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 112368899998754 3588889999999999999999999998754 4567889999999999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=212.94 Aligned_cols=243 Identities=22% Similarity=0.345 Sum_probs=211.5
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
.+++|...|.+++|+.+|..|++++.|+++++|+++..+.... ...|.+.|..+++.+..+.++++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 4578999999999999999999999999999999987654433 35677788888899999999999999999999999
Q ss_pred CCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE
Q 019006 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
++++++........-.-+.|+|+++++++++.|..|.+.|.++.+...+.+- .-.++.++|+.++..++.....|.|.|
T Consensus 95 r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 95 RSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred ccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEE
Confidence 9999999888877777889999999999999999999999998877666543 345788999988887777777889999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
-.... .+.+..++.|. ..+.++.|+|+|+++|+|+.|-.+.+||+...-++..+..+.=+|..+.|+.++++
T Consensus 174 Lsyps----Lkpv~si~AH~----snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 174 LSYPS----LKPVQSIKAHP----SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred Eeccc----cccccccccCC----cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 87653 34456677774 56899999999999999999999999999998888889999999999999999999
Q ss_pred EEEecCCCcEEeec
Q 019006 333 IGSCSSDKQIYLGE 346 (347)
Q Consensus 333 l~s~s~D~~i~i~~ 346 (347)
||++|+|..|-|.+
T Consensus 246 lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 246 LASASEDHFIDIAE 259 (313)
T ss_pred eeccCccceEEeEe
Confidence 99999999998765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=222.55 Aligned_cols=280 Identities=23% Similarity=0.384 Sum_probs=240.8
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
..+.++...|..+.+++|+.|.++.++|...+ +.+..++||...|+.+.++++...+++++.|..|+||..-.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 56788888888889999999999999998643 45668999999999999999999999999999999999877666666
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
...|...|.....++.+ .+|++++.|++..+.|++++..+....++ ..+++.+|+|||..|.+|..|+.|++||+.
T Consensus 299 ~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 77888999888887776 57889999999999999999877666553 468999999999999999999999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 294 (347)
++.....|.+|.++|..++|+.+|-||+++..|+.|++||+|..+. .+.+.-.. ...+.++.|.+.|.+|+.+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----~kt~~l~~---~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----FKTIQLDE---KKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc----cceeeccc---cccceeEEEcCCCCeEEee
Confidence 9998999999999999999999999999999999999999996432 23332211 2358899999999999999
Q ss_pred eCCCeEEEEeCCC--ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 295 SSDRMVYIWDTTS--RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 295 s~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.|=+||+++-.+ ...+..+..|.+..+.+.|....++++++|.|..+++.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 9888888887544 456778888999999999999999999999999888764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=226.48 Aligned_cols=278 Identities=18% Similarity=0.317 Sum_probs=219.8
Q ss_pred eEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..|.||.+.|.+++=+|.. ..+|+|+.||.|++||+. +......+++|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4578999999999999987 789999999999999996 4455678999999999999987 67999999999999987
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCC-eEEEEecCCc
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASD-KIYTGGIDND 207 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~~~~~dg~ 207 (347)
+. ..+.++.... .+..+..+. ....+++++. .|-|||.....+++.+.-. ..+.++.|+|... .|++++.|+.
T Consensus 137 ~~-~p~~tilg~s-~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILGKS-VYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-Ccceeeeccc-ccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 65 3444443322 222232222 2346777765 5999999988888888754 4699999999876 4566779999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|.+||++.+.++..+.- ...-+.++|+|.+-.+.+++.|..++.+|++... ..+....+| -..+.+++|||.
T Consensus 212 IvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dh----vsAV~dVdfspt 283 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDH----VSAVMDVDFSPT 283 (433)
T ss_pred eEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc---ccchhhccc----ceeEEEeccCCC
Confidence 99999999877665432 2346789999977778889999999999998643 334444544 357999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+-+++||.|.+|+||.+..+.-.-. .|. ..|.+|.|+-|.++++|||.|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999876543211 232 3689999999999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=235.41 Aligned_cols=251 Identities=16% Similarity=0.227 Sum_probs=196.5
Q ss_pred EeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC-CCEEEEecCCCeEEEEECCCCc--------eeeeeeccCcc
Q 019006 74 SGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGK--------QIKKMAEHNSF 144 (347)
Q Consensus 74 s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 144 (347)
.|+.++.+++|+... ......+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+..|...
T Consensus 49 gGG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 49 GGGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 367789999999854 3456778999999999999996 7899999999999999997542 23356778889
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 224 (347)
|..+++++.+..++++++.|++|++||++++.....+.+...+.+++|++++..|++++.|+.|++||+++++...++.+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999877778899999999999999888776666667899999999999999999999999999999999999999
Q ss_pred CCCceeE-----EEECCCCCEEEEEcCCC----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 225 HQDMITG-----MSLSPDGSYLLTNGMDC----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 225 ~~~~i~~-----v~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
|.+.+.. ..|++++.+++++|.|+ +|+|||++... .++....... ....+......++|.++++|+
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDN--ASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecC--CccceEEeeeCCCCCEEEEEE
Confidence 9875433 33568899999988774 79999998532 2233322211 112233333355689999999
Q ss_pred CCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCC
Q 019006 296 SDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEP 331 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~ 331 (347)
.|+.|++|++..+.+ ..+.. +..++..++|.|+..
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 999999999987643 23322 456788999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=213.61 Aligned_cols=243 Identities=25% Similarity=0.485 Sum_probs=204.3
Q ss_pred ccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCc
Q 019006 56 HQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 56 h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
-++.++.++|+++ .+.+++++.||++++||......++..++.|+..|.++.|++ ..+.++++|.|++|++|+.....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999985 478899999999999998766677788999999999999998 55678888999999999999999
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCC-CCeEEEEecCCcEEEE
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDA-SDKIYTGGIDNDVKVW 211 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 211 (347)
.+.++.+|...|....++|..++++++++.|+++++||++.......++ +..++.++.|+.- .+.+++|+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999999999999999999999998654443344 5568999999865 4577899999999999
Q ss_pred eCCCCc-eEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CC
Q 019006 212 DLRKGE-VSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DG 288 (347)
Q Consensus 212 d~~~~~-~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g 288 (347)
|+++-+ ++.++.+|.-.|..++|+|. ...|++++.|-+++|||.... ..++.....| ..-+..+.||+ ++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~---ds~~e~~~~H----tEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ---DSAIETVDHH----TEFVCGLDWSLFDP 291 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc---hhhhhhhhcc----ceEEeccccccccC
Confidence 998754 56788999999999999996 468899999999999997632 2233333333 24467778877 67
Q ss_pred CEEEEeeCCCeEEEEeC
Q 019006 289 SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~ 305 (347)
.++|+.+.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 89999999999999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=231.18 Aligned_cols=272 Identities=20% Similarity=0.377 Sum_probs=226.6
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
.-+.|+ ..+.||+|.. ..|++|+.... ........+...|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+..
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 345677 4556666654 57999997533 22233344478999999999999999999999999999999998888888
Q ss_pred -cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc
Q 019006 141 -HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 141 -~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (347)
|...|.++++. ...+.+|+.|+.|..+|++..+.... + .|..+|..+.|++++.++++|+.|+.+.|||....+
T Consensus 258 ~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 258 SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 88888888776 35789999999999999997665443 3 356789999999999999999999999999998888
Q ss_pred eEEEecCCCCceeEEEECCC-CCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE-
Q 019006 218 VSMTLQGHQDMITGMSLSPD-GSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA- 293 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~~-~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s- 293 (347)
....+..|...|..++|+|. ...||+|+ .|+.|++||.... ..+..+.. ...|..+.|++..+-|++
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----~~i~~vdt-----gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG----ARIDSVDT-----GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC----cEeccccc-----CCceeeEEEcCCCCEEEEe
Confidence 89999999999999999995 66888875 6999999998743 22322221 257899999999877766
Q ss_pred -eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 294 -GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 294 -gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|-.++.|.||++.+..++..+.+|...|..++++|++..+++++.|.++++|++
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 456789999999999999999999999999999999999999999999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=213.45 Aligned_cols=245 Identities=24% Similarity=0.419 Sum_probs=205.8
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+.+.+.+|++.|..+.|+|+|.+|+||+.|..|.+|++. ..+....++.|.+.|..+.+..++ ..+++++.|.+++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEE
Confidence 345678999999999999999999999999999999954 345566778999999999988776 478899999999999
Q ss_pred eCCCCCceeecCCCC-ceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFPDKY-QITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~~~~-~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|.++++.+..+..+. -++++.-..-+. .+.+++.|+++++||+|+.+.+.+++. +-.++++.|..++..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccC
Confidence 999999998887654 456665444444 456788999999999998877776643 45689999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCc----cC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHT----GS 320 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~----~~ 320 (347)
.|++||++. +.....+.+|. +.|+.+..+|+|.++.+-+.|..+++||.+.. +++..+.+|. ..
T Consensus 197 ~ikvWd~r~----~d~~~~lsGh~----DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 197 DIKVWDLRK----NDGLYTLSGHA----DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ceeeecccc----CcceEEeeccc----CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 999999984 45567777774 68999999999999999999999999998753 3456666663 45
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
....+|+|++..+..++.|..+|+||
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred cceeeccCCCCccccccccceEEEee
Confidence 67889999999999999999999998
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=244.35 Aligned_cols=246 Identities=22% Similarity=0.431 Sum_probs=215.5
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
...+..|..++|+|....++++-..|.|++||.+-+.++..|..|.++|..++|++.. +++++|+.|.+|++|+.+++.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce
Confidence 3445688999999999999999999999999999999999999999999999999876 589999999999999999998
Q ss_pred ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 177 AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 177 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++.++. |..-|..+.|++.-+.+++++.|.+|+||+..+.+++..+.+|+..|.|..|+|....+++++-|.+|++||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 887765 4567999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcC-------------------------ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-
Q 019006 256 RPYAPQN-------------------------RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR- 309 (347)
Q Consensus 256 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~- 309 (347)
...+... .....+++| +..|.-++|+|.-.++++|++|+.|++|....-+
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 5321100 011233444 3567788999999999999999999999875432
Q ss_pred -eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 310 -ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 310 -~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+-+.+||-+.|.++.|||...++.|.|+|++|++||+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 23467899999999999999999999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=252.51 Aligned_cols=258 Identities=18% Similarity=0.292 Sum_probs=206.7
Q ss_pred CCcEEEEeccCCCeeeE-----EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC----c----eeeeeeccCcc
Q 019006 78 DRDIFLWHVHGDCKNFM-----VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG----K----QIKKMAEHNSF 144 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~ 144 (347)
+|.+++|+...- .... .+..|...|.+++|+|++++|++|+.|+.|+||+.... . ....+. +...
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK 534 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc
Confidence 566777776421 1111 23458899999999999999999999999999997532 1 111222 2345
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCCceEEEe
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (347)
+..+++.+....++++++.||+|++||+.+++.+..+. |...|.+++|+| ++..|++|+.|+.|++||++++.....+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 66677776666789999999999999999887776664 557899999996 6789999999999999999998888887
Q ss_pred cCCCCceeEEEEC-CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 223 QGHQDMITGMSLS-PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 223 ~~~~~~i~~v~~~-~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
..+ ..+.++.|+ +++.++++|+.|+.|++||++... .....+.+| ...+..+.|. ++.+|++++.|+.|+
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h----~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGH----SKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCC----CCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 755 578999995 578999999999999999997532 123344444 3468888996 788999999999999
Q ss_pred EEeCCC------ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 302 IWDTTS------RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 302 vwd~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+||+.. ...+..+.+|...++.++|+|++.+|++++.|+.|++|+
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 999874 356788999999999999999999999999999999997
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=215.19 Aligned_cols=248 Identities=25% Similarity=0.482 Sum_probs=204.7
Q ss_pred CeeEecCccccEEEEEECCC---CCeEEEeeCCCcEEEEeccCCCe---eeEEEeCcccceeEEEEcCCCCEEEEecCCC
Q 019006 49 PIMLLTGHQSAVYTMKFNPA---GTVIASGSHDRDIFLWHVHGDCK---NFMVLKGHKNAILDLHWTTDGSQIISASPDK 122 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~---~~~l~s~~~d~~v~~w~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 122 (347)
.++++.||.++|.+++|.-. ...+++++.|.++++|..+.... .....+||+..|.++.-.++|.++++|+.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 35678899999998888533 34699999999999998853211 1223459999999999999999999999999
Q ss_pred eEEEEECCCC-------------------------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 123 TLRAWDVETG-------------------------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 123 ~i~iwd~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
++++|+..+. ..+-.+.+|...|.++.+.+ ...+++++.|.+|+.||+.+++.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc
Confidence 9999993211 12334667888898888877 35789999999999999999999
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEE
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIW 253 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~w 253 (347)
+..+.....++++..+|....+++|+.|..|++||.|++. ...++.+|++.|.++.|+|.+. .|++++.|+++++|
T Consensus 294 ~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 294 KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 9999888899999999999999999999999999999764 4568899999999999999765 57789999999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|+|... ..+..+.+| .+.+.++.|+. +.+|++|+.|++|+++...
T Consensus 374 DvRS~k---~plydI~~h----~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 374 DVRSTK---APLYDIAGH----NDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCC---CcceeeccC----CceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999632 234555555 57899999974 6799999999999999643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=207.07 Aligned_cols=276 Identities=21% Similarity=0.337 Sum_probs=220.5
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
.+..|.+|.|+|.++.|++++.||++++|+.... .....-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 3678999999999999999999999999999654 3333446889999999997 45799999999999999998764
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
..+..|...+.++...... ..+++|+.|++|++||.++......+.....|.++... ++.|++|+.+..+.+||+|+
T Consensus 88 ~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 3456788888877776443 46899999999999999987666666666678887764 67899999999999999998
Q ss_pred CceEEEec--CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----cccceEEEEECCCC
Q 019006 216 GEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----FEKNLLKCGWSPDG 288 (347)
Q Consensus 216 ~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g 288 (347)
.....+.. .-+-.+.++++-|++.-.++++-||.|.+=.+.+......-...++.|... ..-+|.+++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 76544222 123468999999988889999999999886665432112222233444322 22368899999999
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
..||||+.||.|.+||+.+++.+.++...+.+|..++|+.++..||.++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999888899999999999999998873
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=208.95 Aligned_cols=292 Identities=23% Similarity=0.358 Sum_probs=233.3
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-----------------CeeeEEEeCcccceeEEEEcCCC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-----------------CKNFMVLKGHKNAILDLHWTTDG 112 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~ 112 (347)
...+..|.+++++-+|+|||.++|+|+.|-.|+|.|++.. -..++.+-.|.+.|.++.|+|-.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4567899999999999999999999999999999998511 01234566799999999999999
Q ss_pred CEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----CCCCc
Q 019006 113 SQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQ 186 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~ 186 (347)
..|++++.|++|++||+..-. ...+.......+.++.++|.+ .+++.|..-.++++||+.+-++.... .+...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999986532 222223345567788888876 57778999999999999987765443 24567
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
|+++.+++.++..++++.||.|++||--+++++.++. +|. ..|.+..|..+++|+++.|.|..+++|.+.. +++
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t----~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST----GRM 339 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC----Cce
Confidence 9999999999999999999999999988888887764 453 4699999999999999999999999999874 566
Q ss_pred eEEEecccccc-ccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 265 VKILEGHQHNF-EKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
++.+.+....- ..--....|+....+++.-. ..+.+.-||.++...+..+ -||.+.+..+..+|.++-+.|||.|..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 66665532110 11123345777777776654 3567999999998776544 389999999999999999999999999
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
++.|-
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99983
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=233.19 Aligned_cols=283 Identities=24% Similarity=0.418 Sum_probs=231.2
Q ss_pred ccccEE---EEEEC-CCCCeEEEeeCCCcEEEEeccCCCe-----eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 56 HQSAVY---TMKFN-PAGTVIASGSHDRDIFLWHVHGDCK-----NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 56 h~~~V~---~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
|...|. ++..+ |.+++|+|||.||.|++|+...... ....++.|.+-|.++....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444554 44444 4667899999999999999853322 23457789999999999999999999999999999
Q ss_pred EECCCC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeec----------CCCCceEEEEE
Q 019006 127 WDVETG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTF----------PDKYQITAVSF 192 (347)
Q Consensus 127 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~----------~~~~~v~~~~~ 192 (347)
|+...+ -+...+..|..+|.+++....+..++++|+-|+.|.+||+..+. .+..+ .++..+++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998876 45667888999999988856667899999999999999998662 22221 23457999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.+..+++|+..+.+++||.++.+.++.+++|++.|..+..++||+.+++++.||+|++||+. +++|+.++..|.
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~ 255 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHK 255 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc----ccceeeeEEecc
Confidence 9999899999999999999999999999999999999999999999999999999999999998 567888777664
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.++++..+|+=..+++|+.||.|+.=|+++......+...+.+|..+..+....-+-.+..|+.|.=|.
T Consensus 256 ----e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 256 ----EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ----CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 4599999999999999999999999999988544444444556677777775555556667777777665
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-28 Score=189.15 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=222.5
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--------------CeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--------------CKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
+|+ ...+|++++|+|.|.+.|+|++..+.++.....- ...+..-+.|++.|.+.+|+|+|++|++
T Consensus 28 ~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 28 ILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred Eec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 444 4567999999999999999999999998754210 1112344678999999999999999999
Q ss_pred ecCCCeEEEEECCCCce-----eeeeeccCcceeEeecCC---CCCCEEEEEc-CCCceEEEeCCCCCceeecCCC-Cce
Q 019006 118 ASPDKTLRAWDVETGKQ-----IKKMAEHNSFVNSCCPSR---RGPPLVVSGS-DDGTAKLWDMRQRGAIQTFPDK-YQI 187 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~-~~v 187 (347)
|+.|++|++..++.... ..++..|.+-+.++++.. .+..++++++ .|..|.+-|-.+++..+.+..+ ..|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654322 234566888888887743 2344666544 5667777787788877777544 445
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--C-----CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--H-----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
.++ ++-.+-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|+.|++|..|....+||++.
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg--- 262 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--- 262 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC---
Confidence 443 333567899999999999999998877776532 1 35689999999999999999999999999984
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
++.++.+..| ...+.++.|+|...||+++|.|..|++=|+... -.+.....|...+..+.|||..--+++.
T Consensus 263 -~r~iq~f~ph----sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 263 -GRMIQRFHPH----SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred -CceeeeeCCC----ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 4556666554 357899999999999999999999999998642 2234556799999999999999999999
Q ss_pred cCCCcEEeecC
Q 019006 337 SSDKQIYLGEI 347 (347)
Q Consensus 337 s~D~~i~i~~~ 347 (347)
|.|.++.+|.+
T Consensus 338 sadkt~tlwa~ 348 (350)
T KOG0641|consen 338 SADKTATLWAL 348 (350)
T ss_pred cCcceEEEecc
Confidence 99999999964
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=220.11 Aligned_cols=227 Identities=23% Similarity=0.411 Sum_probs=194.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...|.++.+. +..+++|..|.+|+|||.++...+..+.+|.+.|.++.+.. .++++|+.|.+|++||..++.++.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhh
Confidence 4578998885 56899999999999999999888899999999987766543 489999999999999999999998
Q ss_pred ecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 180 TFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 180 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++-++ ..|..+.|+. +++++++.|..+.+||+.+.. +...+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 87554 5688888864 799999999999999998654 223567899999999995 569999999999999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
.+ ..++..+.+|.. .+.++. -.|+++++||+|.+|++||...|.++..+.||+.-|.++.|. ++.++|
T Consensus 348 st----~efvRtl~gHkR----GIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 348 ST----CEFVRTLNGHKR----GIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred cc----eeeehhhhcccc----cceehh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee
Confidence 74 456777877753 344443 358999999999999999999999999999999999999994 568999
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
|+.||+|++||+
T Consensus 416 GaYDGkikvWdl 427 (499)
T KOG0281|consen 416 GAYDGKIKVWDL 427 (499)
T ss_pred ccccceEEEEec
Confidence 999999999996
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=218.42 Aligned_cols=242 Identities=24% Similarity=0.441 Sum_probs=206.5
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 131 (347)
+.--...|+++.|-.||.+||+|+..|.|++||. .....+..+.+|+.+|..+.|+|.+ ..+++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3345678999999999999999999999999995 3334456788999999999999965 5677888999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
......+..|..+|.+..+++.++.++++|+.||+|++||++.. ..+.++.+..+|..+.+-|.|..+++++. +.|++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 88766888999999999999998899999999999999999976 67788899999999999999999888775 46999
Q ss_pred EeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 211 WDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 211 wd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
||+-+|. ....+..|...|+|+++..++..|+++|-|+.+++||+.++ +.+. .-.+.+++.+++.+|+++
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----Kvv~-----s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----KVVH-----SWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----EEEE-----eeecccceeeEEecCCCc
Confidence 9998654 44445559999999999999999999999999999997643 2222 234568899999999999
Q ss_pred EEEEeeCCCeEEEEeC
Q 019006 290 KVTAGSSDRMVYIWDT 305 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~ 305 (347)
.++.|..+|.+.+=+.
T Consensus 293 t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEEecccceeeeehh
Confidence 9999999998877643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=211.49 Aligned_cols=282 Identities=21% Similarity=0.376 Sum_probs=226.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee----------------eEEE-eCcccceeEEEEcCCC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN----------------FMVL-KGHKNAILDLHWTTDG 112 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~----------------~~~~-~~h~~~v~~~~~~~~~ 112 (347)
+..+..|.-+|.+|+++|++.+.++++.|++|.-|++...... +..- ++|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4567789999999999999999999999999999987532111 0111 3788899999999999
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEE
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVS 191 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~ 191 (347)
++|++|+.|..|.||+.++.+.+..+..|.+.|...++-.. ...+++++.|.++++|++.....+.++ .|+..|..+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999998888554 456788999999999999887776654 5677888888
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe-c
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE-G 270 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-~ 270 (347)
...-++.+-+|+.|+++++|++ ..+....+.+|.+.+-|++|-. ...+++|+.+|.|.+|++...++ +...+ .
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkp----lf~~~~A 367 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKP----LFTSRLA 367 (479)
T ss_pred hhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCc----eeEeecc
Confidence 7777777778889999999999 4455667788888999999975 56789999999999999875332 22221 2
Q ss_pred ccc-------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCccCeeeEEEcCCCC-EEEEecC
Q 019006 271 HQH-------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTGSVNESVFHATEP-VIGSCSS 338 (347)
Q Consensus 271 ~~~-------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~ 338 (347)
|.. +.+..+.+++..|...++|+||.+|.|++|-...+ .+++.++ -.+.|+.++|+++++ +++..+.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 211 11137889999999999999999999999988776 4566665 568999999999999 5555554
Q ss_pred C
Q 019006 339 D 339 (347)
Q Consensus 339 D 339 (347)
.
T Consensus 447 E 447 (479)
T KOG0299|consen 447 E 447 (479)
T ss_pred c
Confidence 3
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=213.30 Aligned_cols=276 Identities=20% Similarity=0.319 Sum_probs=225.4
Q ss_pred cccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 57 QSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 57 ~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
.+.|.+++|+|..+ -+|+++. -.+.+|+..+ +.....+...++.|.++.|-.||+++++|+..|.|+|+|..+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch-hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 36799999999664 3444433 3577787643 2333345566788999999999999999999999999997776677
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDL 213 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 213 (347)
+.+..|...+....|.+.+..++++|++|+.+++||+.+......+ .+..-|.|.+++|... .+++|+.||+|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8889999999999999999999999999999999999887753344 4566799999999866 6789999999999999
Q ss_pred CCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 214 RKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 214 ~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+.. ..+.++ .|..+|..+.+-|.|..++++|.. .+++||+.... +.+..+. ++...|+++.+..++..|+
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~---qll~~~~----~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG---QLLTSMF----NHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc---eehhhhh----cccceEEEEEeecCCceEe
Confidence 987 455555 478899999999999999998854 89999997432 1222222 2346899999999999999
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+||-|+.|++||+.+.+.++.+. -+++|.+++.+|++..++.|-.||.+-+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 99999999999999988888774 4689999999999999999999998754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=204.29 Aligned_cols=246 Identities=22% Similarity=0.355 Sum_probs=201.8
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
....+.||...|+++.|+.+|.+||||+.+|.|++|+.... .....+...-..+.-|.|+|-+..|+.|+.||.+-+|.
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 34568899999999999999999999999999999998644 33344445556788899999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-----------------------C
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-----------------------Y 185 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------~ 185 (347)
+.+....+.+.+|+..+.+-.+.|++ +.++++..||+|++||.++++++..+... .
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 99877788899999999888888885 67899999999999999988765544300 0
Q ss_pred -----------------------------ceEE---EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 186 -----------------------------QITA---VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 186 -----------------------------~v~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
.+.+ +.++..-+..|+|+-||+|.|||+...+..+.++ |...|..+.
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~ 334 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLK 334 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEE
Confidence 0011 1122233457889999999999998777655554 778899999
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|-+ ..+|++++.+|.|+.||.|. +++...+.+|. ..|...+++|++++++++|.|++.+||+..
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRt----G~l~~~y~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDART----GQLKFTYTGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccc----cceEEEEecCc----hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 998 78999999999999999984 56777788875 468999999999999999999999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=201.94 Aligned_cols=286 Identities=19% Similarity=0.291 Sum_probs=204.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eee--EEEeCcccceeEEEEcCCCCEEE-EecCCCeEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNF--MVLKGHKNAILDLHWTTDGSQII-SASPDKTLRA 126 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~i 126 (347)
..|.||.+.|++|+|+.||..|||++.|++|++|++..-. +.. +...-.-+--+.+.|+||-+-++ ++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4688999999999999999999999999999999985310 000 00011112347788999876554 4555567999
Q ss_pred EECCCC---ceeeee---------eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEc
Q 019006 127 WDVETG---KQIKKM---------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFS 193 (347)
Q Consensus 127 wd~~~~---~~~~~~---------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~ 193 (347)
|-+... .....+ ..|...+..+-. ..+..++++++.|..|.+|+++ ++.++.+.. ...-+..+.+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 876432 111100 112222222222 2345689999999999999998 666666643 3456678899
Q ss_pred CCCCeEEEEecCCcEEEEeCC---CC-----ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC---
Q 019006 194 DASDKIYTGGIDNDVKVWDLR---KG-----EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN--- 262 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--- 262 (347)
|+|+++++++..-.|++|.+- .| ..++++++|+..|..++|+++.+.++|.+.||++++||..-.....
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999999999999863 22 2457899999999999999999999999999999999985321111
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCC
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
..++......+..-....+++.+|.|+.||.+... .+++|..++++....+ +.|++.|.+++|+++++++||+|.-
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 11221111111112344589999999999876543 7999999988766544 4799999999999999999999864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=229.38 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=226.8
Q ss_pred cCc-cccEEEEEECCCCCeEEEee--CCCcEEEEeccCC-----------CeeeEEEeCcccceeEEEEcCCCCEEEEec
Q 019006 54 TGH-QSAVYTMKFNPAGTVIASGS--HDRDIFLWHVHGD-----------CKNFMVLKGHKNAILDLHWTTDGSQIISAS 119 (347)
Q Consensus 54 ~~h-~~~V~~v~~~~~~~~l~s~~--~d~~v~~w~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 119 (347)
-+| +..|+++..+|+|..+|||| .|+.+++|+...- .+.+.....|.+.|.|+.|++||.+||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345 45699999999999999999 8999999986411 123345678999999999999999999999
Q ss_pred CCCeEEEEECCC-------C-----------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 120 PDKTLRAWDVET-------G-----------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 120 ~dg~i~iwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|+.|.||.... + +....+.+|...|.++++++++ .++++++.|++|.+||.++...+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 999999998762 1 2345677899999999999854 68999999999999999988777776
Q ss_pred C-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC------CceeEEEECCCCCEEEEEc----CCCcE
Q 019006 182 P-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ------DMITGMSLSPDGSYLLTNG----MDCKL 250 (347)
Q Consensus 182 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~v~~~~~~~~l~t~~----~d~~i 250 (347)
. |...|..+.|+|.|++|++-+.|++|++|+...-...+.+.++. .....+.|+|||.+|++.. .-..+
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 5 55789999999999999999999999999976655555554432 3567899999999999864 23467
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-------------C----CEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-------------G----SKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------g----~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.|.+... .++-..+-+|. ..+..+.|+|. . ..+|+||.|+.|.||.....+++..
T Consensus 248 ~IieR~t----Wk~~~~LvGH~----~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 248 AIIERGT----WKVDKDLVGHS----APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred EEEecCC----ceeeeeeecCC----CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 7777543 23334555664 46778888761 1 1578999999999999988877754
Q ss_pred ecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 314 LPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 314 ~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.. ...+|.++.|+|+|-.|..||.||+|.+..+
T Consensus 320 i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 320 IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 432 2468999999999999999999999998753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=196.18 Aligned_cols=246 Identities=21% Similarity=0.354 Sum_probs=201.2
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC--CCceEEEeCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD--DGTAKLWDMR 173 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--d~~i~iwd~~ 173 (347)
++.....|.++.|+++|.++++++.|.++++||..+++.++.+..+.-.+...++..... .++.++. |.+|+..++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEee
Confidence 444567899999999999999999999999999999999988876655555556554443 3445555 8899999999
Q ss_pred CCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE
Q 019006 174 QRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 174 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
..+.++.+++ +..|+.++.+|-+..+++++.|++|++||+|..++...+..... ...+|.|+|-++|++.....|++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEE
Confidence 9999999875 56899999999999999999999999999998777666544333 34789999999999988889999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe---eeEEEcCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV---NESVFHAT 329 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v---~~~~~~~~ 329 (347)
||+|.+... +...+.-.. ........+.|||||++|+.++..+.+++.|.-+|.++..+.++...- .+..|.|+
T Consensus 167 yD~Rs~dkg--PF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 167 YDLRSFDKG--PFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEecccCCC--CceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999976322 222222211 223567889999999999999999999999999999999888876543 68899999
Q ss_pred CCEEEEecCCCcEEeecC
Q 019006 330 EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 330 ~~~l~s~s~D~~i~i~~~ 347 (347)
++++.+++.||+|++|++
T Consensus 244 s~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CcEEEEecCCCcEEEEEc
Confidence 999999999999999975
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=187.54 Aligned_cols=247 Identities=23% Similarity=0.442 Sum_probs=201.0
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCC----CCEEEEec-CCCe
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTD----GSQIISAS-PDKT 123 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~-~dg~ 123 (347)
-.-|.+.|+|.+|+|+|++||+|++|.+|++.-...+. ..-..+.-|.+.|..++|..+ +..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 35689999999999999999999999999986543221 123467789999999999643 45677665 4677
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--------CceEEEEEcCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--------YQITAVSFSDA 195 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~ 195 (347)
|++-|...|+....+.+|.+.+..+... ++.++++|+.|.+|++||++-..++..+... ..|.+++.+|.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 8888888999999999999888665432 3468999999999999999987777665421 35899999999
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
++.+++|..|....+||++.++.+..+..|...|.++.|+|...|+++++.|..|++=|+...-...-.+-.... .
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e----h 318 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE----H 318 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe----c
Confidence 999999999999999999999999999999999999999999999999999999999998632111111112222 2
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
++.+..+.|+|..--+++.|.|+++.+|-+
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEecc
Confidence 467889999999999999999999999965
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=198.18 Aligned_cols=248 Identities=24% Similarity=0.423 Sum_probs=199.7
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
-.+|++.|+.+...--|..|||++.|++|+|+....+. ..+..|.||.++|+.++|.. .|..|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 45899999999988899999999999999999986544 45678999999999999976 799999999999999999
Q ss_pred CCCCce--eeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCC-c-ee--ecCCCCceEEEEEcCC---C--
Q 019006 129 VETGKQ--IKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRG-A-IQ--TFPDKYQITAVSFSDA---S-- 196 (347)
Q Consensus 129 ~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~-~~--~~~~~~~v~~~~~~~~---~-- 196 (347)
-++++- ......|...|+++++.|.. +.+|+.++.||.|.+.+.+... - .. ...|...+++++|.|. +
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887742 33456788899998887654 3467889999999999887552 1 11 2245677999999886 3
Q ss_pred ---------CeEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCC----CEEEEEcCCCcEEEEeCCCCCCc
Q 019006 197 ---------DKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDG----SYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 197 ---------~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~----~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
+.|++|+.|+.|+||+..++. ...++.+|.+.|+.++|.|.- .++++++.||++.||-.+...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-- 244 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-- 244 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc--
Confidence 459999999999999987753 344689999999999999964 489999999999999876321
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
.....++ .+.++..++++.||+.|..|+.++.|+.|.+|--
T Consensus 245 e~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 245 EPWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred Ccccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1111111 1235678999999999999999999999999953
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=203.82 Aligned_cols=285 Identities=20% Similarity=0.388 Sum_probs=230.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..|.||.+.|+.++-....+++.+++.|.+.+||.++. ...+....||.+.|.+++|++.+.++++++.|++..||...
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 45789999999999887778999999999999999964 34566789999999999999999999999999999999621
Q ss_pred ------C--------Cc--------------------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 131 ------T--------GK--------------------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 131 ------~--------~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
. ++ .+..+.+|...|..+.+.. +...+++++.|.+..+|
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLW 299 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceee
Confidence 0 00 1223445555555544433 44578999999999999
Q ss_pred eCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|++++..+..+. |+.+.+.++-+|..+.+++.+.|-+.++||.+.. ..+..+++|++.|+++.|..+ ..+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCc
Confidence 999999998875 4567888999999999999999999999999843 456689999999999999865 5689999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe-----cCCccCeee
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-----PGHTGSVNE 323 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~ 323 (347)
+|++||+++... .+..++. +..+..++.+..++.|+.--.+..|++||+...+ +.++ .+|...|.+
T Consensus 379 TvKvWdLrNMRs---plATIRt-----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 379 TVKVWDLRNMRS---PLATIRT-----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTC 449 (481)
T ss_pred eEEEeeeccccC---cceeeec-----CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeee
Confidence 999999986543 2333332 3467788888888899999999999999986543 4444 489999999
Q ss_pred EEEcCCC--CEEEEecCCCcEEeecC
Q 019006 324 SVFHATE--PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 324 ~~~~~~~--~~l~s~s~D~~i~i~~~ 347 (347)
++|..+- .-|.+||.|..+.-|+|
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred eeccccCcccccccccccceeeeeEe
Confidence 9997664 36789999999988875
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=199.80 Aligned_cols=283 Identities=20% Similarity=0.345 Sum_probs=220.2
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
-.++.|++.|.+||+|..||.|.+||..+ ...-..+.+|..+|.+++||++|+.|+|+|.|..|++||+..|..+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 67999999999999999999999999964 34455788999999999999999999999999999999999999887775
Q ss_pred ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC------CceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 140 EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK------YQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
. .+.|..+.+++...+.+++.-.+..-.+.++.... ...++.. ....+..|++.|+++++|...|.+.++|.
T Consensus 105 f-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 F-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred c-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 3 45677888888777777766666555555554321 1122211 12334468999999999999999999999
Q ss_pred CCCceEEEecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--ccc-ccceEEEEECCCCC
Q 019006 214 RKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--HNF-EKNLLKCGWSPDGS 289 (347)
Q Consensus 214 ~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~s~~g~ 289 (347)
.+.+++..++-.. ..|..+.|+..|+.|+....|+.|+.|+++.....++-...-..|. ..+ .-.-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9988888776544 6788999999999999999999999999874322221111110010 000 11335778999999
Q ss_pred EEEEeeC-CCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSS-DRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|++.|+. ...+|+|....|.++..+.|.. ....++.|||-.+.+++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988774 4679999999999999998887 567899999999999999 778999995
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=228.50 Aligned_cols=256 Identities=24% Similarity=0.435 Sum_probs=212.2
Q ss_pred CCcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-----------------CCeeeEEEeCcccceeEEEE
Q 019006 46 LESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-----------------DCKNFMVLKGHKNAILDLHW 108 (347)
Q Consensus 46 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-----------------~~~~~~~~~~h~~~v~~~~~ 108 (347)
+...+..+..|.+.|.|+.|+|||++||+|++|+.|.+|.... .++....+.+|...|.+++|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 4456677889999999999999999999999999999998752 12345678999999999999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-----
Q 019006 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD----- 183 (347)
Q Consensus 109 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~----- 183 (347)
+|++.+|++++.|++|.|||..+.+.+..+..|...|..+.+.|.+ +++++-+.|++|++|++..-+..+.+..
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999999999999999999999999999999999999998886 5889999999999999766555444432
Q ss_pred --CCceEEEEEcCCCCeEEEEec----CCcEEEEeCCCCceEEEecCCCCceeEEEECCC-----CC------------E
Q 019006 184 --KYQITAVSFSDASDKIYTGGI----DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-----GS------------Y 240 (347)
Q Consensus 184 --~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-----~~------------~ 240 (347)
...+..+.|+|||.+|++... -..+.|.+-.+.+....+-+|..+++++.|+|. .. .
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 235788999999999998643 235888887777788899999999999999872 11 5
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+|+|+.|+.|.||.....+|.-.. ..-+...|..++|+|||-.|+++|.||+|.++..+.++
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi-------~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVI-------HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhh-------hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 788999999999997543332111 12235679999999999999999999999999886643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=210.42 Aligned_cols=243 Identities=24% Similarity=0.458 Sum_probs=205.0
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+|.|-.+.|+++.|.+++..+++++.|+.+++|++. ..+....+.||++.|+++.|......+++|+.|.+|++||+
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 45677888999999999999999999999999999995 44566788999999999999987777999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
....+.++... ...+.+++.. ...+++|..|++|++||++........+..+.|+++..++++..+.+.+.|.++.
T Consensus 291 ~k~~C~kt~l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 291 QKAYCSKTVLP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred hhhheeccccc-cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCcee
Confidence 98877665543 2333444433 3468899999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCceEEEecCC----CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 210 VWDLRKGEVSMTLQGH----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.. .++.+.+..... +..|.+++|+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t----gKlE~~l~~s~s--~~aI~s~~W~ 440 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT----GKLEKVLSLSTS--NAAITSLSWN 440 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC----ceEEEEeccCCC--CcceEEEEEc
Confidence 9999998877766532 23478899999999999999999999999874 344444443322 2369999999
Q ss_pred CCCCEEEEeeCCCeEEEE
Q 019006 286 PDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vw 303 (347)
|.|..|++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=222.02 Aligned_cols=256 Identities=27% Similarity=0.521 Sum_probs=213.4
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+.||.+.|.+++|..-+.+|++|+.|.++++||.. .......+.+|...|.++...+ .++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc
Confidence 78999999999998878999999999999999975 4455678899999999987764 47888999999999999999
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
..+..+.+|...|.++... ..++++|+.|++|++||+.+++++..+. |...|.++.+... +.+++|+.|++|++|
T Consensus 322 ~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVW 397 (537)
T ss_pred ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEee
Confidence 9999888899999988776 4689999999999999999999988875 4578999988765 899999999999999
Q ss_pred eCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 212 DLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 212 d~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
|+++. +++..+++|...+.++.+ .++.|++++.|++|++||... +.+.+.+.+.. ...+..+++. ...
T Consensus 398 dl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~----~~~~~~~~~~~---~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE----GECLRTLEGRH---VGGVSALALG--KEE 466 (537)
T ss_pred cCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeeccc----CceeeeeccCC---cccEEEeecC--cce
Confidence 99999 999999999998876655 578999999999999999874 45566666531 2345555544 578
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCc-cCeeeEEE
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHT-GSVNESVF 326 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~ 326 (347)
+++++.||.+++||++++.++..+-.+. .....+++
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 9999999999999999999887664443 23344444
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=195.03 Aligned_cols=246 Identities=21% Similarity=0.365 Sum_probs=201.4
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEEecCCCeEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIISASPDKTLR 125 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 125 (347)
.|++.+.+|.+++++++. +++++|+||.|-+|+|||+.. ......+..|.+.|+++.|.++-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 467788999999999997 589999999999999999964 345667788999999999998765 899999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+|+......+..++.|...|+.++.+|.+ ++.++.+.|+.+++||+-+++.-...+-....+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 99999999999999999999999998876 68889999999999999887765555555556669999999999888876
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE--
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG-- 283 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (347)
.|-+|-+.+......+.. ...+.++.|- ++.+|++|+.|+.|.+||... ..+...+.+|.. .|..+.
T Consensus 190 -~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds----~~~~~~~~AH~~----RVK~i~~~ 258 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS----DTPLTEFLAHEN----RVKDIASY 258 (362)
T ss_pred -EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC----Cccceeeecchh----heeeeEEE
Confidence 588998876654444332 2446667764 578999999999999999874 344556666643 344443
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
-.|++.+|+++|+||.|+|||.+..
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 3688999999999999999998776
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=204.40 Aligned_cols=259 Identities=24% Similarity=0.491 Sum_probs=204.8
Q ss_pred ecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccC---------CCeeeEEEeCcccceeEEEEcCCC-CEEEEecCC
Q 019006 53 LTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHG---------DCKNFMVLKGHKNAILDLHWTTDG-SQIISASPD 121 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d 121 (347)
-..|.+.|+.+++-|.. .++|+++..+.|+|||... ++.+-..+.+|...-.++.|++.. -+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 45799999999999966 5778888999999999742 233445789999988999999853 479999999
Q ss_pred CeEEEEECCCCce-------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC--CCceeec-CCCCceEEEE
Q 019006 122 KTLRAWDVETGKQ-------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ--RGAIQTF-PDKYQITAVS 191 (347)
Q Consensus 122 g~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~--~~~~~~~-~~~~~v~~~~ 191 (347)
++|.+||+..... ...+..|...|.++++++....+|++++.|+.+.|||+|+ .++.... .+...+.|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999975432 3456788999999999999999999999999999999995 2222222 3567899999
Q ss_pred EcCCCC-eEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 192 FSDASD-KIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 192 ~~~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
|+|-+. .||+|+.|++|++||+|+- ++..++.+|.+.|..|.|+|+ ...|+++|.|+.+.+||+........
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~----- 354 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS----- 354 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-----
Confidence 998765 6678999999999999975 467889999999999999996 46788999999999999864221100
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
++. ..| ...++++...||...|.++.|+|..+ .|+|++.|+.+.||++
T Consensus 355 -----------------~ed------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 355 -----------------PED------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -----------------hhh------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 000 001 12456677888999999999999988 5668888999999975
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=213.79 Aligned_cols=277 Identities=22% Similarity=0.359 Sum_probs=224.0
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeE-EEEcC-CCCEEEEecCCCeEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILD-LHWTT-DGSQIISASPDKTLR 125 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~~~dg~i~ 125 (347)
....+.||...|..+++.+. ..++++|.||++++|+-.++ ......+.+|.+-|.. +++.+ ++-.|++|+.|+++.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 34578899999999997654 47889999999999987433 2233456777777766 77775 455699999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEec
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+|.......+..+.+|...|.++...... .+++||.|.++++|-..+ +.... .|...|.++..-|.+ .+++|+.
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccC
Confidence 99999999999999999998776654443 489999999999997643 22233 466789999888876 8999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
|.+|++|.- ++...++.+|++.|+.+++-++ ..+++++.||.|++|++. +.++..+.+|. ..+.+++.
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-----ge~l~~~~ght----n~vYsis~ 227 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-----GEVLLEMHGHT----NFVYSISM 227 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-----Cceeeeeeccc----eEEEEEEe
Confidence 999999964 7788899999999999999875 458899999999999984 34555565553 56888888
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+++..+++++.|+++++|+.. ++.+.+.-...+|+++.+-+++. |++|++||.||||.
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 8889999999999999999876 67777764456899999988885 45899999999985
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=207.44 Aligned_cols=244 Identities=20% Similarity=0.367 Sum_probs=205.7
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
....+..|++.|+-+.||++|++||+++.|.+..+|.+.... ...++.+|...|..+.++|++. ++++++.|..++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHhee
Confidence 345678999999999999999999999999999999876543 3667788999999999998875 567888888999
Q ss_pred EEeCCCCCceeecCCC--CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-CceeEEEECCCCCEEEEEc
Q 019006 169 LWDMRQRGAIQTFPDK--YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~ 245 (347)
+||+.++.....+++. ..+.+.+|.||+..+++|+.|+.+..||+... .....++-. ..|.+++.++||+++++.+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999888888765 78999999999999999999999999998643 344444432 4589999999999999999
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc--cCeee
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT--GSVNE 323 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~v~~ 323 (347)
.|..|++++...... ...+.. ...+.+...|.||+++++.-.+..+++||++...++.++.||. ..|..
T Consensus 374 ~d~~i~l~~~e~~~d----r~lise-----~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 374 VDKKIRLYNREARVD----RGLISE-----EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred cccceeeechhhhhh----hccccc-----cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 999999999763211 112222 3468899999999999999999999999999999999999996 45788
Q ss_pred EEEcCCC-CEEEEecCCCcEEeec
Q 019006 324 SVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 324 ~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
.+|...+ .++||||+|+.||||+
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEE
Confidence 8888766 8999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=214.92 Aligned_cols=238 Identities=21% Similarity=0.306 Sum_probs=181.7
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCcee-------------eeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQI-------------KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
|.....++++..+++++.+.....|+...+..+ ..+.+|...|.++.+++.+..++++|+.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333444556556666666666666664433211 1356788899999999866678999999999999
Q ss_pred EeCCCCC-------ceeec-CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCE
Q 019006 170 WDMRQRG-------AIQTF-PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240 (347)
Q Consensus 170 wd~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 240 (347)
||+..+. .+..+ .|...|.+++|+|++ +.|++++.|+.|++||+++++....+.+|...|.+++|+|++++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 9997643 23333 355789999999985 68999999999999999999988899999999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee----CCCeEEEEeCCCce-eeEEec
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS----SDRMVYIWDTTSRR-ILYKLP 315 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs----~dg~i~vwd~~~~~-~~~~~~ 315 (347)
|++++.|+.|++||++.. ..+..+..|.. .....+.|.+++..|++++ .|+.|++||+++.. .+....
T Consensus 183 Latgs~Dg~IrIwD~rsg----~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDG----TIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EEEecCCCEEEEEECCCC----cEEEEEecCCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 999999999999999853 34555665542 2345677899888877654 47999999998654 333333
Q ss_pred CC-ccCeeeEEEcCCCCEEEEec-CCCcEEeecC
Q 019006 316 GH-TGSVNESVFHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 316 ~h-~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
.+ ...+....|++++.+|++++ .|+.|++||+
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 33 34566778999999999888 4999999985
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=214.96 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=178.0
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--------eeec-CCCCceE
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--------IQTF-PDKYQIT 188 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--------~~~~-~~~~~v~ 188 (347)
|+.++.+++|+......+..+..|...|.++++++....++++|+.|++|++||+..+.. +..+ .|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998777778888899999999999987677999999999999999975421 1222 3556899
Q ss_pred EEEEcCCCCeE-EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 189 AVSFSDASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 189 ~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
+++|+|++..+ ++++.|+.|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||++.. ..+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i~t 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIASS 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEEEE
Confidence 99999998764 689999999999999998777775 5578999999999999999999999999999853 34556
Q ss_pred Eeccccccc-cceEEEEECCCCCEEEEeeCCC----eEEEEeCCC-ceeeEE--ecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 268 LEGHQHNFE-KNLLKCGWSPDGSKVTAGSSDR----MVYIWDTTS-RRILYK--LPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 268 ~~~~~~~~~-~~~~~~~~s~~g~~l~sgs~dg----~i~vwd~~~-~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+.+|..... ..++...|++++.+|++++.|+ .|+|||++. .+.+.. +..+.+.+.-....+++.++++|+.|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 677654321 2334456789999999987764 799999985 555554 33444555555556678899999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
++|++|++
T Consensus 285 ~tIr~~e~ 292 (568)
T PTZ00420 285 GNCRYYQH 292 (568)
T ss_pred CeEEEEEc
Confidence 99999985
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=197.08 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=208.2
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
..+.++.||.++|+...++.+....|+++.|-+.++||..... .+. .-.|+.-|.+++|+.|.++|++|+.++.+|||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd-elh-sf~hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD-ELH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh-hhh-hhhhhheeeeEEecccchhhhccchHHHhhhh
Confidence 3577899999999999999999999999999999999975332 222 23588889999999999999999999999999
Q ss_pred ECCCCc-eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGK-QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|++..+ ....+.+|.+.|..+.+...+. .+++.+.|++||+||.+++..++++.....|+++.+++++.++.++ ..+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCc
Confidence 998654 3566788999998888766654 5677799999999999999999999999999999999998766554 456
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEE-eccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL-EGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s 285 (347)
.|.+||..+-..+..+... -.|.+.+++|+...+++|+.|..++.||....... ..+ .+| ..+|.++.|+
T Consensus 206 sV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi----~~~nkgh----~gpVhcVrFS 276 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI----GSYNKGH----FGPVHCVRFS 276 (334)
T ss_pred eeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCcee----eecccCC----CCceEEEEEC
Confidence 7999999888777776543 45899999999999999999999999998764332 222 333 4789999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
|||..-++||.||+|++|....++.
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999998766543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-28 Score=191.02 Aligned_cols=290 Identities=21% Similarity=0.317 Sum_probs=217.6
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCC---------eeeE-----EEeCcccceeEEEEcC-CCCEE
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDC---------KNFM-----VLKGHKNAILDLHWTT-DGSQI 115 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~---------~~~~-----~~~~h~~~v~~~~~~~-~~~~l 115 (347)
+.+-|.+.|+++...+ .|+++++|+.||.|.+||+..-. +... .-.+|+..|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567999999999987 78999999999999999985321 0001 1246888999999998 56688
Q ss_pred EEecCCCeEEEEECCCCceeeeeeccCcceeEeecC--CCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEE
Q 019006 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPS--RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSF 192 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 192 (347)
.+++.|.++++||.++.+....|... +.|.+-+++ .....++++|..|-.|++.|+..+..-..+. |...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 89999999999999988776655432 233332222 2234588999999999999999998888775 4578999999
Q ss_pred cCCCCe-EEEEecCCcEEEEeCCCC-ceEEE--------------ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 193 SDASDK-IYTGGIDNDVKVWDLRKG-EVSMT--------------LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 193 ~~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+|..++ |++|+.||.|++||+|.. .+... -.+|.+.+++++|+.++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 998875 568999999999999854 22222 23567789999999999999999999999999987
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
..+...+..-..- |.....-.+. +. +-+...++---.++.+.++++-++..+..+.+|-..|++.+|-|+-+...++
T Consensus 277 ~G~ntl~~~g~~~-~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 277 SGRNTLREFGPII-HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cCccccccccccc-ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 6543322111110 0000000111 11 3333444444456899999999999999999999999999999999999999
Q ss_pred cCCCcEEee
Q 019006 337 SSDKQIYLG 345 (347)
Q Consensus 337 s~D~~i~i~ 345 (347)
+.|+.|+.|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=191.72 Aligned_cols=262 Identities=23% Similarity=0.352 Sum_probs=206.9
Q ss_pred EEEeeCCCcEEEEeccCCC-----------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 72 IASGSHDRDIFLWHVHGDC-----------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+++|+....|.-+++.... .+...+..|..+|++++.+ +.++++||.|.+|+|||+....++..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 4556665555555543211 1244578899999999886 78999999999999999999999999999
Q ss_pred cCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce
Q 019006 141 HNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 141 ~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (347)
|.+.++++.+.++.. ..|++|+.||.|.+|+...-..+..+. |..+|+.++++|.++..++.+.|+.+++||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999998876532 257899999999999998877777764 567899999999999999999999999999998887
Q ss_pred EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 219 ~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+.+.--+ .-+.+.|+|.|.+++.++.+ .|-+|.+.... ....+. ....+.++.|- ++..|++|.+|+
T Consensus 162 a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~----v~~~i~-----~~~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 162 AFVLNLKN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS----VFREIE-----NPKRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred ceeeccCC-cceeeEEcCCCCEEEEEecc-EEEEEecccHh----Hhhhhh-----ccccceeeeec-CCceEEEecCCc
Confidence 66554322 23459999999999888876 58899876421 111111 11234454443 578999999999
Q ss_pred eEEEEeCCCceeeEEecCCccCeeeEEE--cCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTSRRILYKLPGHTGSVNESVF--HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|.+||..+..+...+.+|+..|-++.+ .|+..+|+|+|+||.|+|||+
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 9999999999999999999999999884 455689999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=185.56 Aligned_cols=236 Identities=22% Similarity=0.326 Sum_probs=205.3
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
..+.||..+++.+.++.+|++|++|+.|.+..+|-..+|+.+.++.+|.+.|++|...... ..+++|+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 3578999999999999999999999999999999988999999999999999988776554 578999999999999999
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEec-----CCcEEEEeCC-------CCceEEEecCCCCceeEEEECCCCCEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGI-----DNDVKVWDLR-------KGEVSMTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~v~~~~~~~~l 241 (347)
+++.+..++....|..+.|++++++++..+. .+.|.++|++ ..++...+..+.+.++.+.|.|-+.+|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999998876654 3569999998 345577788888999999999999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
++|..||.|..||.+... ..+...+.|. ..|..+.+++|..++++||.|.+.++||..+.+++.++.. ..+|
T Consensus 163 i~Ghe~G~is~~da~~g~---~~v~s~~~h~----~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~Pv 234 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK---ELVDSDEEHS----SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPV 234 (327)
T ss_pred EEecCCCcEEEEEcccCc---eeeechhhhc----cccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccc
Confidence 999999999999998532 2334444443 4788999999999999999999999999999999888764 5689
Q ss_pred eeEEEcCCCCEEEEecC
Q 019006 322 NESVFHATEPVIGSCSS 338 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~ 338 (347)
++.+++|....++-+|.
T Consensus 235 N~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGG 251 (327)
T ss_pred cceecccccceEEecCC
Confidence 99999999887776664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=191.67 Aligned_cols=246 Identities=24% Similarity=0.414 Sum_probs=200.2
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC------------C------ceeeeeeccCcceeEeecCCCCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET------------G------KQIKKMAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 155 (347)
..+..|+.++.+.+|++||.++++|+.|-.|+|.|++. + ..++++..|...|+.+.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45778999999999999999999999999999999861 1 2356777888899999998875
Q ss_pred CEEEEEcCCCceEEEeCCCCCc---eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe---cCCCCce
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGA---IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL---QGHQDMI 229 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i 229 (347)
.+|++|+.|++|++||+..... .+.+.....+.++.|+|.|.++++|..-..+++||+.+.++...- ..|++.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 5899999999999999875432 334556678999999999999999999999999999988765543 4688899
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+++.+++.++..+|++.||.|++||-- .++|+..+..... ...|.+..|..+|++|++.+.|..+++|.+.+++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~--gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHG--GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcC--CceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999999999999999999954 4677776654322 2468899999999999999999999999999999
Q ss_pred eeEEecCCc--c---CeeeEEEcCCCCEEEEecC-CCcEEeec
Q 019006 310 ILYKLPGHT--G---SVNESVFHATEPVIGSCSS-DKQIYLGE 346 (347)
Q Consensus 310 ~~~~~~~h~--~---~v~~~~~~~~~~~l~s~s~-D~~i~i~~ 346 (347)
.+.++.|-. + --+...|+..+.++..-.+ .+.++-||
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 998876541 2 2245567777776665554 34566665
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=201.80 Aligned_cols=237 Identities=21% Similarity=0.361 Sum_probs=202.5
Q ss_pred EEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 95 VLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
.+.||.+.|.+++=+|.. ..+++|+.||.|+|||+....+...+..|.+.|..++... ..+++++.|.+++.|-+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeecc
Confidence 468999999999999976 6799999999999999999999999999999999988765 457899999999999876
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCI 252 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~ 252 (347)
. .++.++-.+..+..+.-+..+..+++++. .|.|||.....++..+..-.+.|.++.|+|... .|++++.|+.|.+
T Consensus 138 ~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 138 G-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred C-CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 5 46777777777888887777788888887 499999988888888887788899999999654 6677789999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
||+|...+..+.+..+ .-..++|+|.+--+++|+.|..+|.||.+.. +.+..+.+|..+|.+|.|+|.|+
T Consensus 215 yD~R~~~Pl~KVi~~m---------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTM---------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred EecccCCccceeeeec---------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 9999776655444332 2446789997777889999999999999864 45678899999999999999999
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
-++|||.|.+|+|+.
T Consensus 286 EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFP 300 (433)
T ss_pred hhccccccceEEEee
Confidence 999999999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=193.86 Aligned_cols=270 Identities=13% Similarity=0.127 Sum_probs=198.4
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
+.++++++.|+.+++|++.+. +....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL-EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC-ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 357889999999999998543 3444555553 46789999999876 5677899999999998887666654433 345
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC-cEEEEeCCCCceEEEecCCC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN-DVKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 226 (347)
+.+++.+..+++++..++.+++||+++...+..++....+..++|+|++..+++++.++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 66777766566666778999999999877777766555678899999999999888765 577889988766554432 2
Q ss_pred CceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccc---cccceEEEEECCCCCEEEE-eeCCCeEE
Q 019006 227 DMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHN---FEKNLLKCGWSPDGSKVTA-GSSDRMVY 301 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~s-gs~dg~i~ 301 (347)
.....++|+|++++++.+ ..++.|.+||+...+ ....+..+... .......++|+|+++++++ .+.++.+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 345789999999988654 468999999997532 22222211100 0112346789999998655 34567899
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe-cCCCcEEeecC
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC-SSDKQIYLGEI 347 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~D~~i~i~~~ 347 (347)
+||..+++.+..+. +...+..++|+|+++.|+++ +.+++|++||+
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999888776553 44578999999999998876 56999999985
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=206.41 Aligned_cols=283 Identities=28% Similarity=0.481 Sum_probs=212.5
Q ss_pred EEEEECC---CCCeEEEeeCCCcEEEEeccCCC-----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 61 YTMKFNP---AGTVIASGSHDRDIFLWHVHGDC-----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 61 ~~v~~~~---~~~~l~s~~~d~~v~~w~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
++..|++ ...+||.+.+||.|.++|..... ..+.....|...|.++.|.|....|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 4466765 34689999999999999974321 123445689999999999997778999999999999999998
Q ss_pred ceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--ee-----------e-------c--------C
Q 019006 133 KQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQ-----------T-------F--------P 182 (347)
Q Consensus 133 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~-----------~-------~--------~ 182 (347)
+.+.. +.+|...+.+.|+.+.++..|++|+.||.|.|||++-... .. . . .
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 87765 8899999999999999999999999999999999864320 00 0 0 0
Q ss_pred CCCceEE---EEEcCCCCeEEEEec-CCcEEEEeCCCCceEEEe--------cCC---CCceeEEEECCCCCEEEEEcCC
Q 019006 183 DKYQITA---VSFSDASDKIYTGGI-DNDVKVWDLRKGEVSMTL--------QGH---QDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 183 ~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~~v~~~~~~~~l~t~~~d 247 (347)
+...+.+ +.+..|...|++++. |+.|+|||++........ ..| .-.+.++.....|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0112333 445567888998876 999999999976544322 222 1236677777788999998889
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-eEEecCCccCeeeEEE
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI-LYKLPGHTGSVNESVF 326 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~ 326 (347)
+.|.+||++.... ..+..+.++.. ......-..+||+.+|++|+.|...++|.+.+.+. ...+.||.-+|..+.|
T Consensus 293 ~sIy~ynm~s~s~--sP~~~~sg~~~--~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI--SPVAEFSGKLN--SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW 368 (720)
T ss_pred CcEEEEeccccCc--CchhhccCccc--ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence 9999999986432 22333333221 11223334689999999999999999999887553 4467899999999999
Q ss_pred cCCC-CEEEEecCCCcEEeecC
Q 019006 327 HATE-PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~-~~l~s~s~D~~i~i~~~ 347 (347)
.|.. .-++||+.|..++||++
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccccCCCceeeccCcceEEEec
Confidence 8875 46778899999999986
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=213.02 Aligned_cols=278 Identities=23% Similarity=0.369 Sum_probs=214.5
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee--e-EEEeCc---ccceeEEEEcC-CCCEEEEecCCCeEEEEECCC
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--F-MVLKGH---KNAILDLHWTT-DGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~-~~~~~h---~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 131 (347)
...+|+.+++-..++.++. ..+.+|........ . ...+.. ...+..+.|.. +.++|+|++.+|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3456677788888877776 35667766432211 1 111111 12345677875 567899999999999999987
Q ss_pred ---CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCC-CCeEEEEecCC
Q 019006 132 ---GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDA-SDKIYTGGIDN 206 (347)
Q Consensus 132 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-~~~l~~~~~dg 206 (347)
.+++..|..|...+..+.+++..+.++++|+.||+|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 45566788899999999999999999999999999999999988877776554 46899999986 55788889999
Q ss_pred cEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.+.+||+|.. ++...+.+|.++|.++.|+|++.+|||||.|+.|+|||+...+. ....++.. -.++.++.|-
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~~~tInT-----iapv~rVkWR 272 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KPKHTINT-----IAPVGRVKWR 272 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cceeEEee-----cceeeeeeec
Confidence 9999999865 45667889999999999999999999999999999999985332 11222221 2468899999
Q ss_pred CCCCE-EEEee--CCCeEEEEeCCCceee-EEecCCccCeeeEEEcC-CCCEEEEecCCCcEEe
Q 019006 286 PDGSK-VTAGS--SDRMVYIWDTTSRRIL-YKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYL 344 (347)
Q Consensus 286 ~~g~~-l~sgs--~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~i 344 (347)
|+.++ ||+++ .|-.|+|||++..-+- ..+..|...+..++|-. +...+.+++.||+|..
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 98765 56655 4778999999875443 46889999999999976 4568889999998753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=208.44 Aligned_cols=290 Identities=16% Similarity=0.304 Sum_probs=221.6
Q ss_pred CeeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.++.++.-.+.|++++|.-|| .+||+|+..|.+.+||+++..........|.+.|....|.+....+++++.|..+++|
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 345565446999999999998 4788888899999999976544444456899999999999999999999999999998
Q ss_pred ECCCC----ceeeeeeccCcceeEeecCCCCCCE----------------------------------------------
Q 019006 128 DVETG----KQIKKMAEHNSFVNSCCPSRRGPPL---------------------------------------------- 157 (347)
Q Consensus 128 d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------------------------- 157 (347)
=.+++ +.++.-.+|..+...+.+.......
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 55432 2222222333332222222222222
Q ss_pred -------------------EEEEcCCCceEEEeCCCCCc-eeecCC------CCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 158 -------------------VVSGSDDGTAKLWDMRQRGA-IQTFPD------KYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 158 -------------------~~s~~~d~~i~iwd~~~~~~-~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
++..-.+..++.|+.++... ...+.+ ...+++++.+++|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 23333344556666654433 122222 2468899999999999999999999999
Q ss_pred eCCCCceEEEe---cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 212 DLRKGEVSMTL---QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 212 d~~~~~~~~~~---~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
++++|-...++ +.|...|++++....++.+++++.+|.+++||..... ....++ ....+..+.++...
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----l~~~l~-----l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----LKKSLR-----LGSSITGIVYHRVS 546 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----eeeeec-----cCCCcceeeeeehh
Confidence 99999887777 5899999999999999999999999999999987432 222222 22356667778888
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..++.+-.|-.|+++|..+.+.+..+.||++.|++++|||++++|++++.|++|++||+
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999996
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=206.96 Aligned_cols=288 Identities=21% Similarity=0.290 Sum_probs=224.5
Q ss_pred CccccEEEEEECCC-----------CCeEEEeeCCCcEEEEeccCCC--ee----e-----------------E------
Q 019006 55 GHQSAVYTMKFNPA-----------GTVIASGSHDRDIFLWHVHGDC--KN----F-----------------M------ 94 (347)
Q Consensus 55 ~h~~~V~~v~~~~~-----------~~~l~s~~~d~~v~~w~~~~~~--~~----~-----------------~------ 94 (347)
-|..-|+.+.--|- ..-+.|++.|++|++|++..-. .. + +
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 46666666654441 1348899999999999986410 00 0 0
Q ss_pred -------EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC--CCCEEEEEcCCC
Q 019006 95 -------VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR--GPPLVVSGSDDG 165 (347)
Q Consensus 95 -------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~d~ 165 (347)
..-.....+.+++.+|+|++|++|..-|+++||++..-+....+..|...|.++.++.. ..++|++++.|.
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR 526 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR 526 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc
Confidence 00112346899999999999999999999999999988888888899998887766543 346899999999
Q ss_pred ceEEEeCCCC-CceeecC-CCCceEEEEEcCCC--CeEEEEecCCcEEEEeCCCCceEEEecCC-----CCceeEEEECC
Q 019006 166 TAKLWDMRQR-GAIQTFP-DKYQITAVSFSDAS--DKIYTGGIDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSP 236 (347)
Q Consensus 166 ~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~ 236 (347)
-|.++|+... .+++++. |...|+++.|...+ ..+++++.|..|.+--.+.......+..| +..+..|+..|
T Consensus 527 lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 527 LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC
Confidence 9999998754 3445554 45689999998776 67899999987765332211111111111 24688999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 237 DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 237 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
+.+++++++.|+.|+|||+... +..+.+++.. ..++....+...|.|-|||+...|+++.++|.-+++++.++.|
T Consensus 607 ~~k~v~t~cQDrnirif~i~sg----Kq~k~FKgs~-~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESG----KQVKSFKGSR-DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred CcceEEEEecccceEEEecccc----ceeeeecccc-cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 9999999999999999999753 4455665532 3356788899999999999999999999999999999999999
Q ss_pred CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 317 HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 317 h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+..|+.+.|.+|.+.|++++.||.|.||++
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEEC
Confidence 9999999999999999999999999999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=192.69 Aligned_cols=241 Identities=20% Similarity=0.380 Sum_probs=198.7
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--------eeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--------MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
+.+..+.+..|+|||++|++|+.||.|.+||..+|+..+. +..+...|.+++++.+. .++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEE
Confidence 4456678889999999999999999999999999876443 33456677777887654 68999999999999
Q ss_pred EeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 170 WDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 170 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
|.++++.+++.|. |...|+|+.|+.++..+++++.|.++++.-+++|++..++.+|.+.|+...|.++|.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999998885 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCeee
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNE 323 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~ 323 (347)
|+|++|+... ..|+..++.... +..+.++-.-|. -..++++...++|++.++. |+.+..+.. -.+.-.+
T Consensus 370 gtvkvW~~Kt----teC~~Tfk~~~~--d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 370 GTVKVWHGKT----TECLSTFKPLGT--DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred ccEEEecCcc----hhhhhhccCCCC--cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence 9999999874 345555543332 335666665564 4678888888899999875 555555532 2345667
Q ss_pred EEEcCCCCEEEEecCCCcEEeec
Q 019006 324 SVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 324 ~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+.+|.+.++.+.++|+.+|.|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEE
Confidence 78999999999999999999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=200.37 Aligned_cols=285 Identities=20% Similarity=0.362 Sum_probs=212.1
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCE-EEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQ-IISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~ 129 (347)
..+.||++.|.+|+..|.|.+||+|+.||+|++|.+.+. +.+..+. ..+.|.+++|+|.++. ++.++.+..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 468899999999999999999999999999999999643 3333222 2347999999997653 333333333444443
Q ss_pred CCCce-------------------------------------eeeeeccCcceeEeecCCCCCCEEEEEcC---CCceEE
Q 019006 130 ETGKQ-------------------------------------IKKMAEHNSFVNSCCPSRRGPPLVVSGSD---DGTAKL 169 (347)
Q Consensus 130 ~~~~~-------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---d~~i~i 169 (347)
.-|.. ++....|...+..+.++..+.+ |++... ...|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEE
Confidence 22211 1122234555666777776654 444332 356778
Q ss_pred EeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
.++..+.....| ..++.+.++.|+|...+|++++.. .|++||+.....+..+......|.+|+.+|.|..|+.++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 888766555445 345679999999999999988875 699999988777776666667799999999999999999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC------CCc---eeeEEecCCcc
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT------TSR---RILYKLPGHTG 319 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~------~~~---~~~~~~~~h~~ 319 (347)
.++.+|+.-. .+..+.++.| ...+.+++|++.-.++++|+.||.+.||.. ... ..+.+++||..
T Consensus 630 k~~WfDldls---skPyk~lr~H----~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 630 KMCWFDLDLS---SKPYKTLRLH----EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred eeEEEEcccC---cchhHHhhhh----hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999998742 2334445444 467899999999999999999999999842 111 24568999976
Q ss_pred C----eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 320 S----VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 320 ~----v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
. |.++.|||..++|.|++.||+|++|.
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEeeC
Confidence 6 99999999999999999999999984
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=198.82 Aligned_cols=279 Identities=19% Similarity=0.318 Sum_probs=221.3
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEe--CcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLK--GHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.|..-|.++.++...+.+.||+. |.|++||+.... .+...+. .....|.++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68899999999999999999887 789999996432 2222222 234578999999999999999999999999998
Q ss_pred CCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCc
Q 019006 131 TGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 131 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
.....-+ +.........++.+++ .++.+++..||.|.|||+++...+..++. ...+.|+.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7543221 2222223334445554 46788899999999999999988888865 467999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
||-||++.+....... ..+.|.++..+|++.+|+.|-.++.+.+-...... .+.-|. .+..|.++.|.+.
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------kyqlhl--heScVLSlKFa~c 644 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------KYQLHL--HESCVLSLKFAYC 644 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc-------ceeecc--cccEEEEEEeccc
Confidence 9999999886544432 24679999999999999999999988887665311 122222 3567999999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|+++++.+.|+.+..|....|.-+++.+. ..+|.+..++.++++|+|+|.|+...+.+
T Consensus 645 GkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred CceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999999999999999988887764 45899999999999999999998776654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=191.90 Aligned_cols=293 Identities=21% Similarity=0.362 Sum_probs=212.5
Q ss_pred EecCccccEEEEEECCCC--CeEEEeeCCCcEEEEeccC---CCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEE
Q 019006 52 LLTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHG---DCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~---~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~ 125 (347)
...-|.+.|++++|+|.. .++|+|+.-|.|-+||+.+ ....+..+..|..+|.+|.|+| +..++++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 345578899999999964 5899999999999999942 2233566789999999999999 456899999999999
Q ss_pred EEECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcCCCC-eEE
Q 019006 126 AWDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSDASD-KIY 200 (347)
Q Consensus 126 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~-~l~ 200 (347)
+-|++.... +............+.++.... .++.+..=|...+||++..+. ...+ -++..|+.++++|... +++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999987543 222222333344444444444 455566666999999997664 2222 2445899999999866 678
Q ss_pred EEecCCcEEEEeCCCCc--e--EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--
Q 019006 201 TGGIDNDVKVWDLRKGE--V--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-- 274 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-- 274 (347)
+++.|++.+|||+|.-. . ......|...|.+..|+|++..|+|.+.|..|+|||..-..........+. |...
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~ 418 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG 418 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc
Confidence 99999999999998532 2 244556889999999999988899999999999999842111111111221 1111
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-Cee-eEEEcCCCC-EEEEecCCCcEEeec
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVN-ESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~-~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
-.-......|.|+..++++|-.-..|-|||...++.+..+..... .|. -.+|||-+. ++|-++.-|.|+||.
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 112355678999999999999999999999999997777543322 343 457999998 555555789999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=191.97 Aligned_cols=285 Identities=17% Similarity=0.292 Sum_probs=224.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCce
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.+.|++|.|+|..++|.+||.|+++++|.+++...+. ..+.--.-+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999998765442 23333456899999999998 899999999999999988764
Q ss_pred ee--eeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 135 IK--KMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 135 ~~--~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
.. ...++. ..+..+..++.+ ++++..+..|.|.+....++..+..+.-...+..+.|+.+++.+++.+.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 32 222222 233344445554 47888889999999999999999999888999999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCce--eEEEECCCCCEEEEEcCCCcEEEEeCCCCC--CcCceeEEEeccccccccceEEEEECCC
Q 019006 212 DLRKGEVSMTLQGHQDMI--TGMSLSPDGSYLLTNGMDCKLCIWDMRPYA--PQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i--~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|++...+...+... +.| ++++.++++.|||+|+..|.|.|||...-- ...++++.+ .+....|.++.|+||
T Consensus 372 nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----DNLTTAITSLQFNHD 446 (514)
T ss_pred ecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh----hhhheeeeeeeeCcc
Confidence 99999888877632 233 567778999999999999999999965311 111222222 123457889999999
Q ss_pred CCEEEEeeC--CCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSS--DRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~--dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++.||-+|. +..+++-.+.+......++... +.|++++|+|.+.+||-|-.+|.|.+|+|
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999987774 6779999888877666565443 46899999999999999999999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=190.94 Aligned_cols=248 Identities=23% Similarity=0.370 Sum_probs=202.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+|.||+..|+.+.|+|+...+++++.|..|++|..... ........|..+|+.+..+|.|+||++++.||+....|+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 4568999999999999999999999999999999998533 344567889999999999999999999999999999999
Q ss_pred CCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCC
Q 019006 130 ETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 130 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.+++.+....... -.+.+..++|++ .+|.+|+.|+.+++||+..+.....|+. ...|..+.|+.+|.+++++..|+
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 9998776554422 235567777765 6899999999999999999888888865 57899999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.|++||+|..+...+++... ..+.+++|.+.|.+|+.+|.|=.|++++-. ..+.++...+..|. +....+.|.
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~--~k~W~~~~~~~~~s----g~st~v~Fg 485 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK--TKSWTEIKELADHS----GLSTGVRFG 485 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc--cccceeeehhhhcc----cccceeeec
Confidence 99999999877666655432 358999999999999999887555555522 23344444444332 456778899
Q ss_pred CCCCEEEEeeCCCeEEEEeC
Q 019006 286 PDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~ 305 (347)
...++++++|.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 99999999999999888753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=183.05 Aligned_cols=240 Identities=20% Similarity=0.287 Sum_probs=191.9
Q ss_pred eCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-Ccee-eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 97 KGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQI-KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 97 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
....+.|.+|+||| ...+++.+|.|++||+|+++. +..+ +....|.+.+.+++++.++ ..+++|+.|+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence 34567899999999 455666899999999999986 3332 3455688899999998877 578899999999999999
Q ss_pred CCCceeecCCCCceEEEEEcCCCC--eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
+++..+.-.|...|..+.|-+... .|++|+.|.+|+.||.|....+.+++- .+.+.++..- ...++.+..++.|.
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEE
Confidence 998888878888999999877655 889999999999999999888887764 3556666543 45777888899999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc--eeeEEecCCcc---------C
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR--RILYKLPGHTG---------S 320 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~---------~ 320 (347)
+|+++... ..++.+....+-.+.+++..+|....+.|+-+|.+-+..+..+ ..-+.++.|.. +
T Consensus 180 vynL~n~~------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 180 VYNLENPP------TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred EEEcCCCc------chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 99996432 1222233334456788888888888899999999999988775 44456777762 5
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|++++|||.-..|+|+|.||++..||
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeecccceEEEecCCceEEEec
Confidence 89999999999999999999999998
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=180.71 Aligned_cols=263 Identities=21% Similarity=0.334 Sum_probs=190.6
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC---CeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---CKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAW 127 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 127 (347)
-.+|.+-|+++.|.+-|+.+|+|+.|++|+||+.... .......+.|.+.|..+.|.+ -|+.+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3589999999999999999999999999999996433 333456789999999999975 48899999999999999
Q ss_pred ECCCC---------ceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCC------ceeecC--------C
Q 019006 128 DVETG---------KQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRG------AIQTFP--------D 183 (347)
Q Consensus 128 d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~------~~~~~~--------~ 183 (347)
.-... ....++......|.+++|.|.. +-.+++++.||++|||+...-. ....+. +
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 1233455566778888887653 3468899999999999864322 222222 3
Q ss_pred CCceEEEEEcCC---CCeEEEEecC-----CcEEEEeCCCC----ceEEEecCCCCceeEEEECCC-C---CEEEEEcCC
Q 019006 184 KYQITAVSFSDA---SDKIYTGGID-----NDVKVWDLRKG----EVSMTLQGHQDMITGMSLSPD-G---SYLLTNGMD 247 (347)
Q Consensus 184 ~~~v~~~~~~~~---~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~v~~~~~-~---~~l~t~~~d 247 (347)
.....|+.|+|. .+.|++|+.+ +.++||....+ ..+.++.+|.++|++++|.|+ | ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 456788888864 4567777765 47888865433 345577899999999999996 2 478999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
| |+||.++..... +. ...+. .|+. +.+ -.-+.+..+.+|.+.|+.+.|+
T Consensus 249 g-v~I~~v~~~~s~------i~------~ee~~----~~~~-------------~~~-l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 249 G-VRIFKVKVARSA------IE------EEEVL----APDL-------------MTD-LPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred c-EEEEEEeeccch------hh------hhccc----CCCC-------------ccc-cceEEeeeccCCCCceEEEEEe
Confidence 9 999998742110 00 00000 1111 001 1223456788899999999999
Q ss_pred CCCCEEEEecCCCcEEeec
Q 019006 328 ATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~ 346 (347)
-.|..|+|+|.||.|++|+
T Consensus 298 mtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeeeEEeecCCCceeeehh
Confidence 9999999999999999986
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=203.82 Aligned_cols=234 Identities=24% Similarity=0.457 Sum_probs=192.4
Q ss_pred EEEEc-CCCCEEEEecCCCeEEEEECCCCc------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-
Q 019006 105 DLHWT-TDGSQIISASPDKTLRAWDVETGK------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG- 176 (347)
Q Consensus 105 ~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~- 176 (347)
.+..+ |.+++|+|||.||.|++|++.... ....+..|...|+++.....+ +.++++|.|-+|++|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcc
Confidence 34444 467789999999999999986432 255677888888887665544 468999999999999988663
Q ss_pred -ceeec-CCCCceEEEEE-cCCCCeEEEEecCCcEEEEeCCCCc--eEE--------Eec-CCCCceeEEEECCCCCEEE
Q 019006 177 -AIQTF-PDKYQITAVSF-SDASDKIYTGGIDNDVKVWDLRKGE--VSM--------TLQ-GHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 177 -~~~~~-~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--------~~~-~~~~~i~~v~~~~~~~~l~ 242 (347)
+..++ .|..-|.|+++ .++...+++|+-|+.|.+||+.++. ... .+. ++...|.+++.++.|..++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 44444 35567999999 7788899999999999999998762 222 223 7888999999999999999
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN 322 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~ 322 (347)
+||.++.+++||.+..+ -+-.+++|. ..|..+..++||..++++|+||+|++||+...+++.++..|...|+
T Consensus 188 sGgtek~lr~wDprt~~----kimkLrGHT----dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCK----KIMKLRGHT----DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred ecCcccceEEecccccc----ceeeeeccc----cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 99999999999988532 234456775 4577888899999999999999999999999999999999999999
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.-+|.-..+.+|+.||.|+.-||
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999999999999999987664
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=181.16 Aligned_cols=237 Identities=20% Similarity=0.298 Sum_probs=193.7
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
..+.|.+|.|+|.+..|+.++.||.+++||+........+ .|...+.+|++.+. ..+++|+-||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcce
Confidence 4678999999999999999999999999999877544333 57788889998764 46889999999999999998888
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
+...|...+.|+.+.+..+.+++|+.|++|++||.+.......+.. ...|.++... ++.|+.|+.|..+.+||+|..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 8888888999999999999999999999999999997544444443 3478887764 788999999999999999964
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc----eeeEEecCCcc---------CeeeEE
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----RILYKLPGHTG---------SVNESV 325 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~---------~v~~~~ 325 (347)
.... ......++-.+.++++-|.+.=.+++|-||.|.+=.++.. +..+.++.|.. +|++++
T Consensus 166 ~~~~------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 166 DEPF------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cchh------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 3321 1112334456888899999888999999999888665554 44567777753 699999
Q ss_pred EcCCCCEEEEecCCCcEEeecC
Q 019006 326 FHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 326 ~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|||--..+||||.||.|.+||+
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred eccccceEEecCCCceEEEccC
Confidence 9999999999999999999985
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=203.65 Aligned_cols=248 Identities=17% Similarity=0.325 Sum_probs=199.7
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
-+|+...+.++|.|+|+.|++++.||.|++|+.... +.-..+..+...+.+++... ..|++|+.+++|..|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence 368888999999999999999999999999987665 33333333666666665443 37899999999999998766
Q ss_pred Cceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 176 GAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 176 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..-..+ +...++.+++++.+|.+++.|+.|-.|++-++........+.+|..+|.++.|+|.+++||+.+-||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 543222 2345688999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCCE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEPV 332 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~ 332 (347)
+.+...........+.........+..++|+|+|..|+.-..|+.|++|+....+..+.+.. |+..+..+.|+|.|++
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98643322211111111111135678899999999999999999999999999998887754 3445899999999999
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
||+++.||.|.|||.
T Consensus 247 iAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 247 IAASTLDGQILVWNV 261 (933)
T ss_pred EeeeccCCcEEEEec
Confidence 999999999999984
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=179.88 Aligned_cols=245 Identities=19% Similarity=0.300 Sum_probs=193.0
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC---ceeeeeeccCcceeEeecC-CCCCCEEEEEcCCCceEEEe
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG---KQIKKMAEHNSFVNSCCPS-RRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~d~~i~iwd 171 (347)
...|.+.|.++...-.|++|+||+.|++|+|+.+... +.+.++.+|.+++..+.+. |.-+.+|++++.||.+.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4578899988888878999999999999999998764 4577889999999988764 44567999999999999999
Q ss_pred CCCCCceeec---CCCCceEEEEEcCCC--CeEEEEecCCcEEEEeCCCC---ceEEEecCCCCceeEEEECCC---C--
Q 019006 172 MRQRGAIQTF---PDKYQITAVSFSDAS--DKIYTGGIDNDVKVWDLRKG---EVSMTLQGHQDMITGMSLSPD---G-- 238 (347)
Q Consensus 172 ~~~~~~~~~~---~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~~---~-- 238 (347)
-.++.-.+.+ .|...+++++|.|.+ -.|++++.||.|.+.+.+.. ......+.|.--|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 8776433333 356789999998874 47889999999999988754 233445678888999999986 4
Q ss_pred ---------CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC----CEEEEeeCCCeEEEEeC
Q 019006 239 ---------SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG----SKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 239 ---------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----~~l~sgs~dg~i~vwd~ 305 (347)
+.|++||.|+.|+||+.... ....-..+++| .+.+..++|.|.- .+||++|.||.+.||..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H----~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGH----KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhc----chhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 56999999999999998753 22222335555 4678889999864 57999999999999976
Q ss_pred CCcee---eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 306 TSRRI---LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 306 ~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.... ..-+......++.+.|+..+.+|+-++.|..|++|+
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 52211 112333456799999999999999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=196.27 Aligned_cols=241 Identities=23% Similarity=0.399 Sum_probs=200.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.++..|+++.|+++|..||+|..+|.|.|||.. +.+....+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 347899999999999999999999999999985 3445556677 99999999998 6689999999999999998776
Q ss_pred eeee-eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCC-eEEEE--ecCCcE
Q 019006 134 QIKK-MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASD-KIYTG--GIDNDV 208 (347)
Q Consensus 134 ~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~--~~dg~i 208 (347)
.... +..|...|..+.+.+++ .++++|+.|+.+.|||.....+...+ .|...|.+++|+|-.. .||+| +.|+.|
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 5444 77889999988888776 57999999999999999665555544 6778999999999754 66765 489999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++||..++..+..+.. ...|.+|.|++..+.|+++. .++.|.||+... ...+..+.+|. ..|..++++|
T Consensus 371 ~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----~~~~~~l~gH~----~RVl~la~SP 441 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----MKLVAELLGHT----SRVLYLALSP 441 (484)
T ss_pred EEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc----cceeeeecCCc----ceeEEEEECC
Confidence 9999999988777654 46799999999987777654 467899999764 34455666664 5699999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCc
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
||..+++|+.|.++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 9999999999999999998764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=182.78 Aligned_cols=251 Identities=26% Similarity=0.490 Sum_probs=199.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEec------cCC---------------------------------C
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV------HGD---------------------------------C 90 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~------~~~---------------------------------~ 90 (347)
+..+.||.+.|++++|++.+.++++++.|++.+||.. ..+ .
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 3468899999999999999999999999999999972 110 0
Q ss_pred eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
.++..+.+|...|.+..|...|+.+++++.|.+..+||++++..+..+.+|.....-|+.++.. .++++.+.|.+.++|
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEec
Confidence 2345788999999999999999999999999999999999999999999999998888887764 689999999999999
Q ss_pred eCCCCC-ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 171 DMRQRG-AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 171 d~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
|++..- .+..|. |...|+++.|..+ ..+++|+.|.+|++||+++... +.++. -.++++.++.+..+..++.-..+
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCC
Confidence 998432 233444 4567999999864 5789999999999999987653 34444 35678999999877888888888
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC--CEEEEeeCCCeEEEEeCCC
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG--SKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~sgs~dg~i~vwd~~~ 307 (347)
..|++||+.......-+-...++| ...+.+++|..+. .-|++++.|..+.-|....
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgH----rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGH----RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceEEEEecCCCccccCCccccccc----ceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 899999997533222121223333 4578899997654 4578889999999997653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=197.65 Aligned_cols=290 Identities=21% Similarity=0.413 Sum_probs=216.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-----------------------------------------
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----------------------------------------- 90 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----------------------------------------- 90 (347)
++.||++-|+++.|+|.+..|.+++.|.++.+|....+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 356999999999999999999999999999999764331
Q ss_pred ----------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeeccCcceeEeecCCCCCC
Q 019006 91 ----------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 91 ----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.......||.+.|.+++|+|.|++|+++|.|.+-|++---..+ .+..-+.|+-...++.+.+. +.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cc
Confidence 0011245899999999999999999999999999998543111 11122335545555555543 45
Q ss_pred EEEEEcCCCceEEEeCCC----------C---------------------------------Cc----e-----------
Q 019006 157 LVVSGSDDGTAKLWDMRQ----------R---------------------------------GA----I----------- 178 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~----------~---------------------------------~~----~----------- 178 (347)
.+++|..++.+|+|+... + .. .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 688888888888887410 0 00 0
Q ss_pred -------------------eecCCCCceEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCceEEEecCCCCceeEEEE
Q 019006 179 -------------------QTFPDKYQITAVSFSDASDKIYTGGIDN-----DVKVWDLRKGEVSMTLQGHQDMITGMSL 234 (347)
Q Consensus 179 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 234 (347)
+.+.|.++|.+++.+|+++.++++.... .|++|+..+-.....+++|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0112445699999999999999887543 4999999888888889999999999999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc--eeeE
Q 019006 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR--RILY 312 (347)
Q Consensus 235 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~--~~~~ 312 (347)
+||+++|++.+.|+++.+|..........-....+.| ...|+.|.|+|++.+++|+|.|++|++|..... +.+.
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhcccccc----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence 9999999999999999999875322111112223333 467999999999999999999999999987766 4443
Q ss_pred E--ecCCccCeeeEEEcCCCC-----EEEEecCCCcEEeec
Q 019006 313 K--LPGHTGSVNESVFHATEP-----VIGSCSSDKQIYLGE 346 (347)
Q Consensus 313 ~--~~~h~~~v~~~~~~~~~~-----~l~s~s~D~~i~i~~ 346 (347)
+ ...++.+|+.++|.|-.. .++-|-+.|.|++|.
T Consensus 657 ~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 657 RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 3 346788999999988643 445555789999986
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=188.51 Aligned_cols=234 Identities=21% Similarity=0.401 Sum_probs=192.3
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+|...+.+++.++||++||+|+.|..|.||+.. .......+++|.+.|.+++|-.....|++++.|+.+++|+++...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCc-ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 3899999999999999999999999999999985 455666789999999999999888899999999999999999888
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
.+.++.+|...|..+...... ..+..|+.|.++++|++..........+...+-|++|-. ...|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 888999999988877655443 355667799999999997665555556677888888874 578999999999999999
Q ss_pred CCCceEEEec-CC-----------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 214 RKGEVSMTLQ-GH-----------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 214 ~~~~~~~~~~-~~-----------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
.+.+++++.+ +| +..|++++..|..+.+++|+.+|.|++|-+.+...+...+..+ .+.+.|.+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-----s~~GfVNs 430 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-----SLVGFVNS 430 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec-----ccccEEEE
Confidence 8877766542 22 2278999999999999999999999999987643333333332 24567999
Q ss_pred EEECCCCCEEEEee
Q 019006 282 CGWSPDGSKVTAGS 295 (347)
Q Consensus 282 ~~~s~~g~~l~sgs 295 (347)
++|+++|++|++|-
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999777663
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=197.97 Aligned_cols=238 Identities=22% Similarity=0.384 Sum_probs=198.2
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee--eeeccCcceeE-eecCCCCCCEEEEEcCCCceEE
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK--KMAEHNSFVNS-CCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~-~~~~~~~~~~~~s~~~d~~i~i 169 (347)
-..+.+|+..|..++..++ ..++++|.||++++|+-..++.+. .+..+.+++.. .++.+.+...+++|+.|.+|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 4568899999988887654 479999999999999976554433 35556666665 6665555556899999999999
Q ss_pred EeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 170 WDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 170 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
|...+..+...+. |+..|+++....++. +++|+.|.++++|- .+++...+++|+..|++++.-|++ .++||+.|.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 9999988888775 567899998877665 99999999999994 567788899999999999998877 889999999
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+|++|.- .++++.+.+|. +.|..+++-+++ .+++++.||.|++|++ +++.+.++.||+..|.++....
T Consensus 162 tIklWk~------~~~l~tf~gHt----D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 162 TIKLWKG------GTLLKTFSGHT----DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eeeeccC------Cchhhhhccch----hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999973 45677788774 567888887765 4668999999999998 7888889999999999999888
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
++..++|+|+|++++||+.
T Consensus 230 ~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred CCCeEEEecCCceEEEeec
Confidence 8899999999999999973
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=196.29 Aligned_cols=272 Identities=17% Similarity=0.331 Sum_probs=207.7
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+|...-+.|.|.|+|.+|.+++.||.|++|+..........+..+...|.+++-. +.++++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 47999999999999999999999999999998754422223333366677776654 5599999999999999987765
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEe
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 212 (347)
.-..+..-.-.+..++++.. +.++++|+.|-.|++-+.........+ .++.+|.++.|+|.+++|++.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 42222222334555666555 468899999999999998866655544 5678999999999999999999999999999
Q ss_pred CCCCceEEEecCC--------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 213 LRKGEVSMTLQGH--------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 213 ~~~~~~~~~~~~~--------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.++.+..++.+- ...+..++|+|++..++..+.|+.|++|+...++.+. .++.... ...+..+.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f----~Lr~~~~--ss~~~~~~w 240 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF----KLRDKLS--SSKFSDLQW 240 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe----eeccccc--ccceEEEEE
Confidence 9988776665431 2345678999999999999999999999987665432 2332221 234889999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
+|.|.|||+++.||.|.|||.++-+. ......|.+++|.|+..-+-....
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEee
Confidence 99999999999999999999987222 112357999999999876544333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=205.95 Aligned_cols=255 Identities=24% Similarity=0.435 Sum_probs=216.8
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
..+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+.+|.+.....+..+..|...|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 3445555556667777653 245688888888776678899999999999999988776677788999999998
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
.+.... .++++|+.+|+|++||+...+.++++. +...+.++.|+|-+.+++.|+.|..+++||.+...+.+.+.+|..
T Consensus 77 ~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 887664 588999999999999999888877765 456889999999999999999999999999998889999999999
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.+..+.|+|+|++++.++.|.++++||... +.....++.| ...+..+.|+|..-++++||.|+.+++||+++
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a----gk~~~ef~~~----e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTA----GKLSKEFKSH----EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccc----cccccccccc----cccccccccCchhhhhccCCCCceeeeeccce
Confidence 999999999999999999999999999873 4445555555 35677888999999999999999999999999
Q ss_pred ceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
-+.+.........|.+++|+|++..+.++..+
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99998888878899999999999988887654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=184.01 Aligned_cols=280 Identities=16% Similarity=0.286 Sum_probs=223.8
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.--.++|.+|+|+.+.+.||.+-.||.|.+|++...+-....+.++. ..|.+++|+ ++..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 3333457899999999999999999999999999976655555666665 469999999 45679999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee--cC-CCCceEEEEEcCCCCeEEEEecCCc
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FP-DKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
+++....+....+.+++++.++.+ ..++.|+.||.+..++...+..... +. .+.++.++.|+|++..++.|+.||.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999888888999999988876 4677788999888888776665432 22 3578999999999999999999999
Q ss_pred EEEEeCCCCceEEEec-------C-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 208 VKVWDLRKGEVSMTLQ-------G-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~-------~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
|++||..++...+... . ..--|+++.|-. ...+++|..-|+|.+||.... ..++....| ...+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h----~adV 248 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFG----TLIQSHSCH----DADV 248 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCc----chhhhhhhh----hcce
Confidence 9999999887665211 1 223467777764 457999999999999997643 333333333 4678
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCcee----eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI----LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+++-.+++.++++++.|+.|..|...++.. ......|...|.+++..++ .+.++|.|..+.+
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999999887766532 2345678889999999888 8999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-23 Score=177.35 Aligned_cols=264 Identities=14% Similarity=0.175 Sum_probs=187.4
Q ss_pred eeEecCccccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iw 127 (347)
...+.+|. .+..++|+|++..+ ++++.++.|++|+.... +....+..+. .+..++|+|+++.++++ +.|+.+++|
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 34455554 46789999999876 67788999999998643 3333344443 35678999999977654 568999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE-ecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG-GID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 205 (347)
|+.+.+.+..+... ..+..+.+++++. ++++++.++ .+.+||.+++..............+.|++++..++++ ..+
T Consensus 101 d~~~~~~~~~~~~~-~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPVG-VEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeCC-CCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence 99987766655422 2345567777654 566666554 5677898877665544444456789999999988655 468
Q ss_pred CcEEEEeCCCCceEEEecCCC-----C--ceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQ-----D--MITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~-----~--~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+.|++||+++++....+..+. . ....++|+|+++++++ .+.++.+.+||++.. .....+.. ..
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-----~~ 249 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY----EVLDYLLV-----GQ 249 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEe-----CC
Confidence 999999999887665543221 1 2346889999998655 455678999998743 22222221 13
Q ss_pred ceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 278 NLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
.+..++|+|+|++|+++ +.+|.|++||+.+++++.+++.. +..+.++|+|
T Consensus 250 ~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 250 RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 47788999999999886 46899999999999999888754 6669998876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-25 Score=178.95 Aligned_cols=257 Identities=23% Similarity=0.415 Sum_probs=195.2
Q ss_pred ecCccccEEEEEECCCC--CeEEEeeCCCcEEEEeccC---------------CCeeeEEEeCcccceeEEEEcCC-CCE
Q 019006 53 LTGHQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHG---------------DCKNFMVLKGHKNAILDLHWTTD-GSQ 114 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~---------------~~~~~~~~~~h~~~v~~~~~~~~-~~~ 114 (347)
...|.+.++.+.-++-+ .+.|+-+..|.|.+|++.. ..+++..+.+|...-+.++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 44788888888877654 6788889999999999732 12456778899999999999993 235
Q ss_pred EEEecCCCeEEEEECCCCcee---eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---CceeecCCCCceE
Q 019006 115 IISASPDKTLRAWDVETGKQI---KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---GAIQTFPDKYQIT 188 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~v~ 188 (347)
|++|..-+.|++|...++.-. .-+..|...|..++++|....+|++|+.||+|+|||+|.+ ..+..-.+...|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 888888899999998876532 2355699999999999999999999999999999999977 3344445667899
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCC---CceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRK---GEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
.+.|+....+|++|+.||+++|||+|. ++++.+++.|+.+|+++.|+|. ...++++|.|..|.+||+..-....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e-- 384 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE-- 384 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh--
Confidence 999999888999999999999999985 5677889999999999999995 4678888999999999986311000
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCc
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQ 341 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~ 341 (347)
..- .++... +-|+ ..++++...| +.++.++.||+.-+ +++|.+.||.
T Consensus 385 -------------e~~----~~a~~~-----------L~dl-PpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 385 -------------EID----QEAAEG-----------LQDL-PPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred -------------hhc----cccccc-----------hhcC-CceeEEEecc-hhHhhhheeccCCCCeEEEecccce
Confidence 000 000000 1122 2344444333 45789999999875 7888888875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=183.94 Aligned_cols=237 Identities=25% Similarity=0.442 Sum_probs=186.2
Q ss_pred CCeEEEeeCCCcEEEEeccC--CCeeeEE------------------EeCcccceeEEEEcCCC-CEEEEecCCCeEEEE
Q 019006 69 GTVIASGSHDRDIFLWHVHG--DCKNFMV------------------LKGHKNAILDLHWTTDG-SQIISASPDKTLRAW 127 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~--~~~~~~~------------------~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw 127 (347)
|+++|.|..|..|.|||+.= ...+... -.+|++.|.++.|+..- +.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999851 1111112 23699999999998754 578999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeecCCCCceEEEEEcCCCC-eEEEEecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTFPDKYQITAVSFSDASD-KIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 205 (347)
|+.++++...+..|+..|.++.+++..+..+++|+.|+++.+.|.|... .-........|-.+.|+|... .+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 9999999999999999999999999999999999999999999998422 222334456788999998765 56778899
Q ss_pred CcEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 206 NDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 206 g~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
|+|+-+|+|.. +++.++++|.+.|.++++++.- ..++|++.|+.+++|++....+.. ...|...+ ....+.+
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-----v~~~~~~~-~rl~c~~ 425 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-----VKEHSFKL-GRLHCFA 425 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-----cccccccc-cceeecc
Confidence 99999999975 8899999999999999998864 578889999999999987543321 11121111 2355566
Q ss_pred ECCCCC-EEEEeeCCCeEEEEeCCCceee
Q 019006 284 WSPDGS-KVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 284 ~s~~g~-~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+.|+-. +|+.|+..+.++|||..+...+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 777654 5677888889999998876543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-24 Score=179.56 Aligned_cols=286 Identities=19% Similarity=0.291 Sum_probs=217.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-------------C---------------ee-----------eEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-------------C---------------KN-----------FMV 95 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-------------~---------------~~-----------~~~ 95 (347)
.|.+.|+++..-.+|.+|- |+.|+.|..||-.-+ . +. ...
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 8999999999999888775 999999999983200 0 00 013
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
..+|.+..+.++.+|+.++++|++.|+.+++|+ ..+.+.... -...+.+..+++.+ .++.|+..|...+.|.++.
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence 457888999999999999999999999999999 334333322 23345566777776 7889999999999999998
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE-e-cCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT-L-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
..+.......+++++.|+|+|.+||.|+.|+.|++|.+..+..... . +.+..+|+.+.|++|++++.+.+.|..|.+|
T Consensus 439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 8877777778999999999999999999999999998865433322 1 2234789999999999999999999999999
Q ss_pred eCCCCCCcCceeEEEec-----------cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC---ceeeEEecCCcc
Q 019006 254 DMRPYAPQNRCVKILEG-----------HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS---RRILYKLPGHTG 319 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~---~~~~~~~~~h~~ 319 (347)
... ...+...++-++. ........+..++-+.++++||+|.+.|+|++|...- ...-.++.+|+.
T Consensus 519 ~~~-~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 519 KPS-ECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS 597 (626)
T ss_pred ccc-cCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence 432 1222211111110 0001112344455577889999999999999998643 233457889999
Q ss_pred CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 320 SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 320 ~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-|.+|+|..+...+++.+.|.+|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999999999999999999985
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=188.33 Aligned_cols=291 Identities=20% Similarity=0.367 Sum_probs=211.8
Q ss_pred cCeeEecCccccEEEEEECCCC---CeEEEeeCCCcEEEEeccCCC--------------------eee----------E
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAG---TVIASGSHDRDIFLWHVHGDC--------------------KNF----------M 94 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~--------------------~~~----------~ 94 (347)
.....+.||.+-|++++|+..+ -+|||+|+|..|+||.+.-.. ... .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456789999999999998654 489999999999999873111 000 0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eee-----eeeccCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIK-----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
.+.||.+-|.++.|+|++..|++++.|.++.+|...+.. -+. .+.+.......+.++++. ..+++-+.-|-.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGF 340 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcE
Confidence 134999999999999999999999999999999765542 111 122122234556676665 577888889999
Q ss_pred EEEeCCCCCceee---c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC---------------------------
Q 019006 168 KLWDMRQRGAIQT---F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--------------------------- 216 (347)
Q Consensus 168 ~iwd~~~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------------- 216 (347)
++|-.+....... + .|-..|..++|+|.|+++++.+.|.+-|+|-.-..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9998332111111 1 23456888888888888888888877666532100
Q ss_pred --------ce----------------------------------------------------------------------
Q 019006 217 --------EV---------------------------------------------------------------------- 218 (347)
Q Consensus 217 --------~~---------------------------------------------------------------------- 218 (347)
+.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 00
Q ss_pred -----------------EEEecCCCCceeEEEECCCCCEEEEEcCC-----CcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 219 -----------------SMTLQGHQDMITGMSLSPDGSYLLTNGMD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 219 -----------------~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
+..+.+|.-.|.+++.+|+++.+|++... ..|++|+...... ++.+.+|.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~Hs---- 572 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ----VQELEGHS---- 572 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh----hheecccc----
Confidence 00123566678999999999999998753 4689999875332 33455554
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee----eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI----LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
-.|..++|||||++|++.|.|+++.+|....... ...++.|+.-|++..|+|+++.++|+|.|++|.+|..
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 3588999999999999999999999998754322 2247899999999999999999999999999999963
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-24 Score=170.40 Aligned_cols=275 Identities=21% Similarity=0.325 Sum_probs=207.0
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-------ee----eEEEe-CcccceeEEEEc-------CCCCEEEEec
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-------KN----FMVLK-GHKNAILDLHWT-------TDGSQIISAS 119 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-------~~----~~~~~-~h~~~v~~~~~~-------~~~~~l~s~~ 119 (347)
....+.|+|||..|.+-+.|..+.+|++.... .. ...++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567999999999999999999999985211 00 01111 122457777774 6778899999
Q ss_pred CCCeEEEEECCCCceeeeeec--cCc---ceeEeecCCCCCCEEEEEcCCCceEEEeC-CCCCceeec---C-----CCC
Q 019006 120 PDKTLRAWDVETGKQIKKMAE--HNS---FVNSCCPSRRGPPLVVSGSDDGTAKLWDM-RQRGAIQTF---P-----DKY 185 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~~~s~~~d~~i~iwd~-~~~~~~~~~---~-----~~~ 185 (347)
.|.-|++||.-+|+....+.. |.. ...+++|++++..+ + ++...+|+++|+ |.+.....+ . ...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-f-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-F-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-e-ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999987655533 222 23467888887654 3 456789999999 444322211 1 234
Q ss_pred ceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCc
Q 019006 186 QITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 186 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~ 263 (347)
-+.+++|+|... .++.|+....+-||.-....+...+-+|.+-|+.+.|+++|+.|++|+. |..|..||+|... .
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~---~ 285 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR---D 285 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc---c
Confidence 578899999765 7889999889989888888888889999999999999999999999986 5689999998643 2
Q ss_pred eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.+..+..|...-+ .-+-....|+|++|++|+.||.|++||++. +.....+..|+..++.|+++|--+++|+++..
T Consensus 286 pv~~L~rhv~~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 286 PVYALERHVGDTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhhccCcc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3344444443212 222344579999999999999999999988 77677888999999999999999999999865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-25 Score=183.12 Aligned_cols=209 Identities=27% Similarity=0.513 Sum_probs=173.5
Q ss_pred cCeeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCe------eeEEEeCcccceeEEEEcC-CCCEEEEec
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCK------NFMVLKGHKNAILDLHWTT-DGSQIISAS 119 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~ 119 (347)
.|-..|.||+.+=++|+|++.. -.|++|+.|++|.+||+..... +...+.+|.+.|..++|++ +...+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 4566899999989999999854 5789999999999999964322 3456889999999999998 456788999
Q ss_pred CCCeEEEEECC--CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCC
Q 019006 120 PDKTLRAWDVE--TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDA 195 (347)
Q Consensus 120 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~ 195 (347)
.|+.+.|||++ +.+.......|.+.++++.+++.+..+|++|+.|+++.+||+|+-. ++..+ .++..|.++.|+|.
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999999 4455566778999999999999999999999999999999999643 34444 46678999999998
Q ss_pred CC-eEEEEecCCcEEEEeCCCC--------------ceEEEecCCCCceeEEEECCCCCE-EEEEcCCCcEEEEeCC
Q 019006 196 SD-KIYTGGIDNDVKVWDLRKG--------------EVSMTLQGHQDMITGMSLSPDGSY-LLTNGMDCKLCIWDMR 256 (347)
Q Consensus 196 ~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~i~~v~~~~~~~~-l~t~~~d~~i~~wd~~ 256 (347)
.. .|++++.|+.+.+||+..- +..+.-.||...|..+.|+|...+ +++.+.|+.+.||++.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 65 6678889999999998632 234566789999999999998775 5677889999999875
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=183.90 Aligned_cols=242 Identities=22% Similarity=0.347 Sum_probs=185.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC-----
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET----- 131 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~----- 131 (347)
.+.|.+++-+|+|.+|+.|+..|.+++|.+.. ...+..+.+|-..|+++.|+.||.+|+|||.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 46799999999999999999999999999964 355566789999999999999999999999999999998642
Q ss_pred ----CceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 132 ----GKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 132 ----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
-+.+..+..|.-.|.++..... ....+++++.|.++++||+..+..+.++.....+.+++.+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 2356677788888887665443 34578999999999999999999988888888999999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|.+.++.... +....|..=.+++++ .....+.+|.. ...|.+++++-
T Consensus 240 ~I~~~~~~~~~------~~~~~v~~k~~~~~~------------------------t~~~~~~Gh~~--~~~ITcLais~ 287 (476)
T KOG0646|consen 240 KIFQNLLFKLS------GQSAGVNQKGRHEEN------------------------TQINVLVGHEN--ESAITCLAIST 287 (476)
T ss_pred eEEeeehhcCC------ccccccccccccccc------------------------ceeeeeccccC--CcceeEEEEec
Confidence 99998874321 111111111112211 11222333321 24688888888
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
||.+|++|+.||.|.|||..+.+++.++..-.++|+.+.+.|-.+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 888888888888888888888888877765667888888866543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=201.62 Aligned_cols=237 Identities=24% Similarity=0.461 Sum_probs=205.9
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+..|...|.++..-..++.+++|+.|..+-+|.+.. ......+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccC-CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 4568999999999877789999999999999999853 344456899999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
++.++++.+|...+..+.|+|-+ .++++|+.|+.+++||++...+...+..+ ..+.++.|+|+|.+++.|+.|..+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki 180 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence 99999999999988888888765 46789999999999999988888887654 45788999999999999999999999
Q ss_pred EeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 211 wd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
||+..|+...+|..|...+..+.|+|..-.+++||.|+++++||++.++. +.... .....+.+.+|+|++..
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~----I~s~~----~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV----ISSGK----PETDGVRSLAFNPDGKI 252 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE----eeccC----CccCCceeeeecCCcee
Confidence 99999999999999999999999999999999999999999999985421 11111 12467889999999999
Q ss_pred EEEeeCCC
Q 019006 291 VTAGSSDR 298 (347)
Q Consensus 291 l~sgs~dg 298 (347)
+++|-.+.
T Consensus 253 ~~~G~q~s 260 (825)
T KOG0267|consen 253 VLSGEQIS 260 (825)
T ss_pred eecCchhh
Confidence 99997653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=169.74 Aligned_cols=211 Identities=23% Similarity=0.406 Sum_probs=170.9
Q ss_pred EeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce------eee---------eeccCcceeEeecCCCCCCEEE
Q 019006 96 LKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ------IKK---------MAEHNSFVNSCCPSRRGPPLVV 159 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~------~~~---------~~~~~~~v~~~~~~~~~~~~~~ 159 (347)
.+.|.+.|.++...+ .|+++++|+.||.|.+||+++... +.+ -..|.-.|.++.+.|-+.-++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346888999998876 789999999999999999976431 100 0124445667777787778999
Q ss_pred EEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC---CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 160 SGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS---DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 160 s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
+++-|.++++||..+-+....|..+..|.+-+++|-. -.+++|..+-.|++.|+.+|...+.+++|.+.|.++.|+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999998888888888888888888753 3677888888999999999999999999999999999999
Q ss_pred CCCE-EEEEcCCCcEEEEeCCCCCCcCceeEEEeccc----------cccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 237 DGSY-LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ----------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 237 ~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
...+ |++|+.||.|++||+|... .|...+..|. ..+.+.+..++|+.||.++++.+.|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRras---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRAS---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeeccc---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 8775 6789999999999998532 2344443332 123467889999999999999999999999998
Q ss_pred CCce
Q 019006 306 TSRR 309 (347)
Q Consensus 306 ~~~~ 309 (347)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=172.29 Aligned_cols=293 Identities=19% Similarity=0.372 Sum_probs=219.7
Q ss_pred eEecCccccEEEEEECC-----CCCeEEEeeCCCcEEEEeccCCC--eeeEEE--eCcccceeEEEEcCC----CCEEEE
Q 019006 51 MLLTGHQSAVYTMKFNP-----AGTVIASGSHDRDIFLWHVHGDC--KNFMVL--KGHKNAILDLHWTTD----GSQIIS 117 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~-----~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~--~~h~~~v~~~~~~~~----~~~l~s 117 (347)
.+.++|..+++.++|++ +.+.+|+.|. +.+.+|+..++. ..+... ..|......++|+-+ .-++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2245665555 568888887654 222221 236667788888753 347889
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CCCceEEEEEc
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFS 193 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~ 193 (347)
+|.-|.|+|.|+.+++....+..|+..++.+.+.|..++++++++.|..|++||+++..++..+. |...|.++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999888774 56789999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCce------EE----------------------EecCCCCceeEEEECCCCCEEEEEc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEV------SM----------------------TLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~------~~----------------------~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
.++.++++++.|..|++|++...+. .. +-.-|..+|-|+.|- |+++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 9999999999999999999873221 10 112355556666663 57899999
Q ss_pred CCCcEEEEeCCCCCC-------cCceeEEEeccccc-cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee--EEec
Q 019006 246 MDCKLCIWDMRPYAP-------QNRCVKILEGHQHN-FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL--YKLP 315 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~--~~~~ 315 (347)
-++.|..|.....+. ...+...+....-. -+......+|.|-+++||.|...|.|++||++..+.. .++.
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 999999997632221 11122222111110 0122445567788999999999999999999887653 2332
Q ss_pred CC--ccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 316 GH--TGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 316 ~h--~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+ ...|...+|+.++.+|+....|++|+=||
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 22 34689999999999999999999999887
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=177.12 Aligned_cols=262 Identities=19% Similarity=0.299 Sum_probs=194.4
Q ss_pred EeeCCC-cEEEEeccCCCeeeEEEeCc-ccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeeeccCcceeEeec
Q 019006 74 SGSHDR-DIFLWHVHGDCKNFMVLKGH-KNAILDLHWTTDGSQIISASP-DKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150 (347)
Q Consensus 74 s~~~d~-~v~~w~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 150 (347)
+++.|. ++.+||+... .....+++. ...-.++..- +..+++++.. -..+.+|.+...........-++.+.++..
T Consensus 12 ssS~d~~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTG-TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCCC-ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 444444 4889999644 333444443 1111111111 2356776653 457999998766554433334556666655
Q ss_pred CCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCC---------CCceEE
Q 019006 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLR---------KGEVSM 220 (347)
Q Consensus 151 ~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~ 220 (347)
++. +.+++.|+..|.|++|.+.++..+..+..+ ..|+|+.|+.++.++++|+.||.|.+|++- +-+...
T Consensus 90 ~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 90 SNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CCC-ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 555 467777779999999999999988777544 479999999999999999999999999763 234567
Q ss_pred EecCCCCceeEEEECCC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 221 TLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+..|+-+|+++...+. ..+++|+|.|.++++||+... ..+..+ .++..+.+++.+|.+..++.|+.+|
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti-----~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI-----TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----eeeEEE-----ecCCcceeEEEcccccEEEecCCcc
Confidence 78899999999987764 568999999999999999743 333222 2356789999999999999999999
Q ss_pred eEEEEeCCC----------------ceeeEEecCCcc--CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTS----------------RRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~----------------~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|.+.++.. +..+..+.||.+ .|++++++-|+.+|++|+.||+|+|||+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 999987532 223456789988 9999999999999999999999999996
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=170.37 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=199.3
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
.|.+.|++|.+.|+++.|..+++ |.+|..-|.|++|.+.++. ....++ .|...|+.+.--|+ +.+.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc-cchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 56788999999999999987766 8899999999999997653 344555 56778999988887 57889999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCC-----CCC---CEEEEEcCCC-ceEEEeCCCCCceeec-----CCCCceEEEEE
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSR-----RGP---PLVVSGSDDG-TAKLWDMRQRGAIQTF-----PDKYQITAVSF 192 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~~~~s~~~d~-~i~iwd~~~~~~~~~~-----~~~~~v~~~~~ 192 (347)
|++..+..+. .|.-.++++-|.+ ... .+++.-+... ...+-|......++.. .....+.+..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9987644321 1221222211111 100 1111111000 0111121111111111 12234666664
Q ss_pred cCC-CC--eEEEEecCCcEEEEeCCCCceE----------EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 193 SDA-SD--KIYTGGIDNDVKVWDLRKGEVS----------MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 193 ~~~-~~--~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
..+ +. .+++|.++|.+.+||+.++... .....|..+|.++.+.+.-..=++++.+..+..|.+....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 322 22 4567889999999999887433 3445688899999999877777888989899999886432
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.....-..+.-. +-.+..+..-||++.+|+++.|+.||||+.++.+.+..++.|+..|++++|+|+.++||.+|+|
T Consensus 239 gslq~~~e~~lk----npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 239 GSLQIRKEITLK----NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred CcccccceEEec----CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 111111111111 1134456678999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
++|-+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=173.63 Aligned_cols=274 Identities=17% Similarity=0.330 Sum_probs=210.5
Q ss_pred ecCcc-ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQ-SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~-~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
++.++ ..|.||.|.++|+.+ +|..+|.|.+|+..+ ++.......|.+.|.+++...+|. |++|+.|..|..|| ..
T Consensus 241 fek~ekk~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~ 316 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGDVI-TGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DN 316 (626)
T ss_pred cccccceEEEEEEEcCCCCEE-eecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-cc
Confidence 44443 579999999999865 999999999999854 444444559999999999999986 55699999999999 43
Q ss_pred Cceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 132 GKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 132 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
.+.++. +....+.+..++....+ ++.|+..+.|..=.+.++-....+.+..+...++.+|+.+.+++++.|+.++
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCc---EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 333333 33445566666654433 5667777777777777766666666777899999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+|+ ..+...+.+ -.++..++.|+|.| .+|.|...|...+.|..+ ...+.. |.. ...+..++|+|+|.
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~----~~lv~~---~~d--~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET----QDLVTI---HTD--NEQLSVVRYSPDGA 460 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc----ceeEEE---Eec--CCceEEEEEcCCCC
Confidence 998 444444433 24678999999999 999999999999999874 222222 222 46789999999999
Q ss_pred EEEEeeCCCeEEEEeCCCc-eeeEEec-CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSR-RILYKLP-GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+||.||.|+.|++|.+... +...+.. .|..+|+.+.|++|++++.+-|.|-.|..|+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999987654 3333332 2337899999999999999999999998884
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=184.71 Aligned_cols=238 Identities=18% Similarity=0.346 Sum_probs=197.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
...++++.+.|||+.|++|+.-.++.|||+......+ ..+..-.-...+++.+||.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 4577899999999999999999999999996442211 122233345678899999999999999999999999999999
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
+.|.+|...+.++..++++ ..+.+|+-|.++|.||++++...+.+....+|.++.+.|.+.++++|..++.+.+-...
T Consensus 545 rqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s- 622 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS- 622 (705)
T ss_pred ecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-
Confidence 9999999988877776665 56899999999999999998887777777889999999999999999999999888754
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
+...+.+.-|.+.|.++.|.+-|+++++.|.|+.+..|..-- +..+ +.. .-...|.+|..|.|.++|++||
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy----Gasi--Fqs---kE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY----GASI--FQS---KESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc----ccce--eec---cccCcceeeeeccCceEEEecC
Confidence 334566667889999999999999999999999999997542 2222 211 1235799999999999999999
Q ss_pred CCCeEEEEeC
Q 019006 296 SDRMVYIWDT 305 (347)
Q Consensus 296 ~dg~i~vwd~ 305 (347)
.|+...||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=195.01 Aligned_cols=237 Identities=22% Similarity=0.341 Sum_probs=186.0
Q ss_pred EEEEEECC-CCCeEEEeeCCCcEEEEeccC--CCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNP-AGTVIASGSHDRDIFLWHVHG--DCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
+..|+|+. +.++|||++..|.|.+||+.. ..+.+..+..|+..+.++.|++ ...+|++||.||+|++||+...+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44667774 468999999999999999965 2344457889999999999997 4568999999999999999988888
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
..+......+.++.+++..++.|+++...|.+++||+|+.... +...|.+.|.|+.|+|+..+||+|+.|+.|+|||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 8888888889999999998999999999999999999965432 23356789999999999999999999999999999
Q ss_pred CCCce--EEEecCCCCceeEEEECCCCCE-EEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-C
Q 019006 214 RKGEV--SMTLQGHQDMITGMSLSPDGSY-LLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-D 287 (347)
Q Consensus 214 ~~~~~--~~~~~~~~~~i~~v~~~~~~~~-l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~ 287 (347)
.+++. ..++. ...+|..++|.|...+ |++++ .|-.|++||++... -+...+..|. ..+..++|.. |
T Consensus 250 t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~----~~vt~i~W~~~d 321 (839)
T KOG0269|consen 250 TDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHT----DSVTGIAWDSGD 321 (839)
T ss_pred cCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc---ccceeeeccC----ccccceeccCCC
Confidence 76543 23332 2357899999998664 55554 57899999997432 2233444443 4566777754 5
Q ss_pred CCEEEEeeCCCeEEEEe
Q 019006 288 GSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd 304 (347)
-..|.+++.||.|..-.
T Consensus 322 ~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHL 338 (839)
T ss_pred ceeeEeecCccHHHHhh
Confidence 56788999998876543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=181.49 Aligned_cols=241 Identities=19% Similarity=0.307 Sum_probs=175.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
..+++|+..|.++++.|.|.++++||.|-+|++||+..-. ..+.+. .....+.++.+++.+.. ++..+..-..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~-iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ-ILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe-EEEEecCccee
Confidence 4678899999999999999999999999999999987432 122222 23345667777776654 44455567889
Q ss_pred EEeCCCCCceeec-------------CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEe------cCCCCc
Q 019006 169 LWDMRQRGAIQTF-------------PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTL------QGHQDM 228 (347)
Q Consensus 169 iwd~~~~~~~~~~-------------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~ 228 (347)
++|-......... .|-..++|.+|+|... .|++++.||++|+||+...+..... .+-.-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9986543322211 2334689999999854 7889999999999998765432221 122346
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS- 307 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~- 307 (347)
++..+|+++++.+|+|..||.|.+||.+.... ......-..|.. -..+.++.||+||++|++-+.|+.+++||++.
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCccc-ccceEeeeccCC--CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 88999999999999999999999999864321 112223334432 23699999999999999999999999999986
Q ss_pred ceeeEEecCCc--cCeeeEEEcCCCCEEEEecC
Q 019006 308 RRILYKLPGHT--GSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 308 ~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~ 338 (347)
++++....+-. -.-++++|+|+.++|.||.+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 44555444433 24578999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=175.50 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=225.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee----eEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN----FMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~----~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~i 126 (347)
+.+|.+.|.-+. |-|..|+++..++.+++|+......+ ...++...+.|+++ ++|. =+.|+.|+.+|.+.+
T Consensus 110 ~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql 186 (910)
T KOG1539|consen 110 TLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQL 186 (910)
T ss_pred eccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEE
Confidence 445555555443 56888999999999999998652111 11222323337776 4554 357899999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCe-EEEEec
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDK-IYTGGI 204 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~-l~~~~~ 204 (347)
|++.+++.+.++......|+++...|.- ..++.|..+|+|.++|++.++.+.++.++ ++|++++|.-||+. +++|+.
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 9999999999999999889888777654 47889999999999999999999999886 89999999998874 566777
Q ss_pred CCcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC-------------ceeEEE--
Q 019006 205 DNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN-------------RCVKIL-- 268 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-------------~~~~~~-- 268 (347)
.|.+.+||+...+....++ .|.+.|....|-|....+++++.|+.+++|=........ .|++.+
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 7999999998877666554 788889999999999999999999988887332000000 000000
Q ss_pred ----------------------------------------------------------------------ec--------
Q 019006 269 ----------------------------------------------------------------------EG-------- 270 (347)
Q Consensus 269 ----------------------------------------------------------------------~~-------- 270 (347)
..
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence 00
Q ss_pred -----------cc------cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe---cCCccCeeeEEEcCCC
Q 019006 271 -----------HQ------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL---PGHTGSVNESVFHATE 330 (347)
Q Consensus 271 -----------~~------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~ 330 (347)
|. .+....+.+++.++.|++.+.|++.|.|-+|++.+|-....+ ++|.++|..++....+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 00 001234677888999999999999999999999999888887 6999999999999999
Q ss_pred CEEEEecCCCcEEeecC
Q 019006 331 PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~~ 347 (347)
+.++|++.||.+..||+
T Consensus 506 ~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDF 522 (910)
T ss_pred ceEEEccCcceEEEEec
Confidence 99999999999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=183.12 Aligned_cols=244 Identities=20% Similarity=0.390 Sum_probs=199.1
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC---CCCEEEEecCCCeEEEEECC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT---DGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~ 130 (347)
-+....+++++.+|+|++||+|..-|++++|++.. ......+.+|...|.++.|+. ..++|++++.|..|.|+|+.
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 35667899999999999999999999999999963 344556789999999999985 34689999999999999986
Q ss_pred CC-ceeeeeeccCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCC-CCceeecC------CCCceEEEEEcCCCCeEEE
Q 019006 131 TG-KQIKKMAEHNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQ-RGAIQTFP------DKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 131 ~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~-~~~~~~~~------~~~~v~~~~~~~~~~~l~~ 201 (347)
.. ..+.++..|...|.++.|.-.+. ...++++.|+.|.+ +..+ ......++ .+..++.++..|..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 54 45677888999999888765542 35678888877654 3332 11111221 2456899999999999999
Q ss_pred EecCCcEEEEeCCCCceEEEecC---CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
++.|..|+|||+.+++....+++ |.+....+...|.|.|+++...|.++.++|... +.|+..+.+|. ..
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s----gEcvA~m~GHs----E~ 685 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS----GECVAQMTGHS----EA 685 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc----chhhhhhcCcc----hh
Confidence 99999999999999999998875 556677789999999999999999999999874 55666777764 57
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
|..+.|.+|.+.|++.+.||.|.||.+..
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECch
Confidence 89999999999999999999999998754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=198.00 Aligned_cols=277 Identities=23% Similarity=0.389 Sum_probs=211.1
Q ss_pred EEEECCCCC-eEEEe----------eCCCcEEEEeccCC--C---eeeEEEeCcccceeEEEEcCCCCE----EEEecCC
Q 019006 62 TMKFNPAGT-VIASG----------SHDRDIFLWHVHGD--C---KNFMVLKGHKNAILDLHWTTDGSQ----IISASPD 121 (347)
Q Consensus 62 ~v~~~~~~~-~l~s~----------~~d~~v~~w~~~~~--~---~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d 121 (347)
.++|+|++. +||+| +.+.++.||.+... . +....+ .-..+...++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 457888875 45544 23455666655311 1 111111 12346788999987765 8889999
Q ss_pred CeEEEEECCCC------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCceEEEEE
Q 019006 122 KTLRAWDVETG------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQITAVSF 192 (347)
Q Consensus 122 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~ 192 (347)
|.|.+||.... ..+.....|.+.|..+.+++..++++++|+.||.|.|||+.+-..-... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997652 2345567799999999999999899999999999999999864332222 23457999999
Q ss_pred cCCC-CeEEEEecCCcEEEEeCCCCceEEEecCCCC--ceeEEEECCCC-CEEEEEcCCC---cEEEEeCCCCCCcCcee
Q 019006 193 SDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD--MITGMSLSPDG-SYLLTNGMDC---KLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 193 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~v~~~~~~-~~l~t~~~d~---~i~~wd~~~~~~~~~~~ 265 (347)
+..- ..|++++.+|++.|||+|..+.+..+..+.. .+..+.|+|+. ..+++++.|. .|.+||+|.. ...+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---ssP~ 246 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---SSPL 246 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---CCch
Confidence 8654 4677899999999999999887777765543 46789999975 4566666543 7999999853 3445
Q ss_pred EEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEE
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIY 343 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~ 343 (347)
+.+++|. ..+.++.|++.+ .+|++++.|+.|.+|+..+++.+..++.....+.++.|.|..+ .|+.++-||.|-
T Consensus 247 k~~~~H~----~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 247 KILEGHQ----RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhcccc----cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 6666664 568999999977 8899999999999999999999999999889999999999998 888888999998
Q ss_pred eec
Q 019006 344 LGE 346 (347)
Q Consensus 344 i~~ 346 (347)
|.-
T Consensus 323 I~s 325 (1049)
T KOG0307|consen 323 IYS 325 (1049)
T ss_pred eee
Confidence 764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=172.22 Aligned_cols=260 Identities=19% Similarity=0.295 Sum_probs=201.3
Q ss_pred cEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeE---EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 59 AVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFM---VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 59 ~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.++++.|+.... ..|+.+.|..+++|.-.+....+. .+.+. .-.|++......++++|+..+.|+|||+.....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 488999987663 445667788999997765422222 22222 334444444458999999999999999997666
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--CceEEEEEcCCCCeEE-EEecCCcEEEE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQITAVSFSDASDKIY-TGGIDNDVKVW 211 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~-~~~~dg~i~iw 211 (347)
.+.++.|..-|..+..... ..++++++..|-|.+..+.++.....+.+. ..+.-+.|++..+.++ +++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7778889888877766544 468999999999999999988877777654 3466899999887654 68899999999
Q ss_pred eCCCCceEEEe-cCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 212 DLRKGEVSMTL-QGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 212 d~~~~~~~~~~-~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
|.......+.+ ..|..+...|+|+|.+ ..|++.|.|..|.+||.+.... ...+. +..+...++|+++|.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~-----y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLT-----YSHPLSTVAFSECGT 263 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc----cceee-----ecCCcceeeecCCce
Confidence 99766555543 5688899999999965 4677889999999999984332 22222 234688999999999
Q ss_pred EEEEeeCCCeEEEEeCCC-ceeeEEecCCccCeeeEEEcCCC
Q 019006 290 KVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
+|+.|+..|.|+.||++. +.++..+.+|..+|.+++|.|..
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999999986 56788899999999999998875
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=176.46 Aligned_cols=294 Identities=24% Similarity=0.380 Sum_probs=227.5
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
..|..|.+-|..|.|+..|..|++|+.|..|.+|++......+....+|...|..-.|-| +...|++++.||++++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 457899999999999999999999999999999999765555555678999998888987 356799999999999876
Q ss_pred CCC-Cce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CC---CceEEEEEcCCCC-
Q 019006 129 VET-GKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DK---YQITAVSFSDASD- 197 (347)
Q Consensus 129 ~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~---~~v~~~~~~~~~~- 197 (347)
+.. +.. ...+..|.+.+..++..|..++-|.+++.|+.+.-+|++++.+...+. +. .....++.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 543 222 345667888888888888888889999999999999999876554432 11 2467788888765
Q ss_pred eEEEEecCCcEEEEeCCCCceE------EEecC------CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC------
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVS------MTLQG------HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA------ 259 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~------~~~~~------~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~------ 259 (347)
.+++|+.|-.+++||.+.-... ..+.. ..-.|++++|+.++.-|+++-.|-.|+++.-.-..
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 7889999999999998753321 22211 12358999999887777777778789998432110
Q ss_pred --CcCceeEE-EeccccccccceEEEE-ECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 260 --PQNRCVKI-LEGHQHNFEKNLLKCG-WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 260 --~~~~~~~~-~~~~~~~~~~~~~~~~-~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
+....++. +++|... ..|..+- |.|...|+++||.-|.|.+|+-.+++++..+.|-..-|+++.-||--+.|||
T Consensus 376 ~s~~~~~~k~vYKGHrN~--~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNS--RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred Ccchhhccchhhcccccc--cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 00122222 5666432 2344443 6899999999999999999999999999988887779999999999999999
Q ss_pred ecCCCcEEeec
Q 019006 336 CSSDKQIYLGE 346 (347)
Q Consensus 336 ~s~D~~i~i~~ 346 (347)
+|-|..|+||.
T Consensus 454 SGid~DVKIWT 464 (559)
T KOG1334|consen 454 SGIDHDVKIWT 464 (559)
T ss_pred cCCccceeeec
Confidence 99999999995
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=173.04 Aligned_cols=271 Identities=15% Similarity=0.271 Sum_probs=207.1
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.|+.++|.|||..|+.+..+ .+.+||.. +......+++|++.|.+++|+.||+.+++|+.|+.|.+|+..-.-.+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~n-dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTS-DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCC-CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 79999999999887766554 58899985 44567789999999999999999999999999999999985432222 2
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 218 (347)
..|+..+.+..++|-.. .+++++-+ ..-+|...++ .+.......++.+.+|..||.+++.|..+|+|.+-+ .+++.
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEE 165 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCc
Confidence 25888888888888764 45555532 3567766543 333444456789999999999999999999999986 34555
Q ss_pred EEEec---CCCCceeEEEECCCC-----CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 219 SMTLQ---GHQDMITGMSLSPDG-----SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 219 ~~~~~---~~~~~i~~v~~~~~~-----~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
...++ +.+++|.+++|+|.. ..+++.....++.++.+.. +.+.. .........++.+-++|.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-----~~Igk----~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-----KQIGK----DRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-----eeecc----cccCCCCchhheeccCCcE
Confidence 44444 367899999999963 3677777777777777642 11111 1122334667889999999
Q ss_pred EEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 291 VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+..|+.|+.+.+|. +.|..+.++......|+.|+.+|+++.++-|..||+|..+.+
T Consensus 237 ~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 99999999999996 567777777777889999999999999999999999987653
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=166.31 Aligned_cols=247 Identities=19% Similarity=0.240 Sum_probs=188.8
Q ss_pred EEeCcccceeEEEEcCCC--CEEEEecCCCeEEEEECCCC----ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 95 VLKGHKNAILDLHWTTDG--SQIISASPDKTLRAWDVETG----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
..+-+..+|++++|+|.. +++++|+.-|+|-+||+.+. ..+..+..|...|..+.+++.+...+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 455688899999999964 46788888999999999522 335567788899999999999988999999999999
Q ss_pred EEeCCCCCceeecCC---CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCC-CEEEE
Q 019006 169 LWDMRQRGAIQTFPD---KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDG-SYLLT 243 (347)
Q Consensus 169 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~-~~l~t 243 (347)
+-|+.+...-..+.. ...+..+.|+.+...++.+..=|...+||++++.. ...+..|...|++|+++|-. .+|||
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 999986543333322 24567788888888888888888999999998764 45566788899999999964 57899
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC----CceeeEEecCCc-
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT----SRRILYKLPGHT- 318 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~----~~~~~~~~~~h~- 318 (347)
+|.|++.+|||+|.........-.... +...|.++.|||++..|+|.+.|..|+|||.. .-+....+. |.
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~----HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLP----HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceeccc----ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 999999999999976544322111222 24578899999999889999999999999983 223333332 22
Q ss_pred -----cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 319 -----GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 319 -----~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
-.....+|+|+..+++.+-.-..|-|+|
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 1356778999999999888766666554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=160.25 Aligned_cols=210 Identities=20% Similarity=0.414 Sum_probs=158.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee--eee--eccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI--KKM--AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
.+++|.+.|++++|+.||++|+|++.|+.|++|++.+.... +.+ ....+....+.|.++-..++++.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 57899999999999999999999999999999998764321 011 01112334567777777788888888899999
Q ss_pred eCCCCCc----ee-------ecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC
Q 019006 171 DMRQRGA----IQ-------TFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 171 d~~~~~~----~~-------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
-+..+.. .. .++ +...+..+.....+.++++++.|.+|.+|+++ |+.+..+...+..-+..+.+|+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 7643221 10 011 22345667777778899999999999999998 8888877766666777889999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 238 GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 238 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
|+++++++----+++|.+- |..||.+ ..-..++.+.||
T Consensus 240 GRFia~~gFTpDVkVwE~~---------------------------f~kdG~f---------------qev~rvf~LkGH 277 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPI---------------------------FTKDGTF---------------QEVKRVFSLKGH 277 (420)
T ss_pred CcEEEEecCCCCceEEEEE---------------------------eccCcch---------------hhhhhhheeccc
Confidence 9999999987778888631 2233321 122334578899
Q ss_pred ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 318 TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 318 ~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...|..++|+++...++|+|.||+++|||.
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 999999999999999999999999999984
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-19 Score=162.09 Aligned_cols=286 Identities=35% Similarity=0.646 Sum_probs=226.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEE-cCCCC-EEEEecC-CCeEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHW-TTDGS-QIISASP-DKTLRAW 127 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~s~~~-dg~i~iw 127 (347)
.+.+|...+..+.|.+.+..++.++.|+.+.+|+..........+.++. ..+..+.+ ++++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 4668999999999999999999999999999999875542445555543 36777777 78777 5555444 9999999
Q ss_pred ECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceeecC-CCCceEEEEEcCCCC-eEEEEe
Q 019006 128 DVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASD-KIYTGG 203 (347)
Q Consensus 128 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~ 203 (347)
+... ......+..|...+..+.+.+.+. .+++++. |+.+++|++.....+..+. +...+.+++++|++. .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9987 677788888999898888888775 6666675 9999999999877666665 467899999999888 455559
Q ss_pred cCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 204 IDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
.|+.|++||...+.... .+..|.... ...|+|++.++++++.|+.+++||.+.... ....+..| ...+..+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~----~~~v~~~ 290 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGH----SSSVLSV 290 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecC----CccEEEE
Confidence 99999999988777777 688887764 348999998999999999999999985432 22333233 4578888
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEec--CCccCeeeEEEcCCC-CEEEEe-cCCCcEEeecC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP--GHTGSVNESVFHATE-PVIGSC-SSDKQIYLGEI 347 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~-~~l~s~-s~D~~i~i~~~ 347 (347)
.|+|++..+++++.|+.+.+||........... .|...+..+.| +.. ..+..+ ..|+.+.+|++
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeec
Confidence 999999999889999999999998887776665 88888999999 533 455555 68888888864
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=162.65 Aligned_cols=273 Identities=15% Similarity=0.294 Sum_probs=191.4
Q ss_pred EEEECCCCCeEEEeeCCCc-----EEEEeccCCCeeeEEEeCcc----cceeEEEEcC-------CCCEEEEecCCCeEE
Q 019006 62 TMKFNPAGTVIASGSHDRD-----IFLWHVHGDCKNFMVLKGHK----NAILDLHWTT-------DGSQIISASPDKTLR 125 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~~~~~~~~~~h~----~~v~~~~~~~-------~~~~l~s~~~dg~i~ 125 (347)
.+..-|..++++++-.+.. +++|+-.. ..+. -.|. ..-.|++|.. -|+++|.|..|..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e--~nlY--vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE--ENLY--VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC--ccee--EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 4455576777777655433 45555422 1211 1121 1225666753 267999999999999
Q ss_pred EEECCCCcee---------------------eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-C
Q 019006 126 AWDVETGKQI---------------------KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-D 183 (347)
Q Consensus 126 iwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~ 183 (347)
|||+.--..+ .....|...|..++++.....+|++|+.|.+|++||+.++++...+. +
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 9997521100 01124666666777777778899999999999999999999999998 4
Q ss_pred CCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCC
Q 019006 184 KYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 184 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
..+|.++.|+|.. ..+++|+.|++|.++|.|.. .....++ -.+.|..++|.|.. ..++++..||+++-+|+|..
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-- 362 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-- 362 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCC--
Confidence 5789999999874 47889999999999999942 2122222 13468899999865 46777788999999999964
Q ss_pred cCceeEEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCc---cCeeeEEEcCCCC-EEEE
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHT---GSVNESVFHATEP-VIGS 335 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~-~l~s 335 (347)
+.++..+..|. ..|..+++++.- .+|+++|.|+.|++|++..-.... ...|. +...++++.|+-. +||.
T Consensus 363 -~~~vwt~~AHd----~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 363 -GKPVWTLKAHD----DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-VKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred -CCceeEEEecc----CCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-cccccccccceeecccCCCcceEEEe
Confidence 36677777774 578888888764 578899999999999876533211 11222 2355667777764 7788
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
+|..+.++|||+
T Consensus 437 GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 437 GGEKAVLRVWDI 448 (463)
T ss_pred cCccceEEEeec
Confidence 888889999985
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=158.23 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=210.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC----C-CeeeEEE-eCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG----D-CKNFMVL-KGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~----~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+.+|.+-|+++.|+.++++||+|+.|..+++|++.. . .+++... ..|...|.+++|....+.+++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 679999999999999999999999999999999852 1 2333222 235578999999999999999999999999
Q ss_pred EECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec---CCCCceEEEEEcCCCC-eE
Q 019006 127 WDVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF---PDKYQITAVSFSDASD-KI 199 (347)
Q Consensus 127 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~v~~~~~~~~~~-~l 199 (347)
.|+++.+.+..+... .+.|..+..+|. .+.+++.+.++.+.+||.+... .+..+ ........+.|+|... .+
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999988766554322 236676777776 4678899999999999998665 33222 2334578889998765 56
Q ss_pred EEEecCCcEEEEeCCCCceE-E------EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 200 YTGGIDNDVKVWDLRKGEVS-M------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~-~------~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.+..+-+-+||.+..... . .++.....-.++.|+|+|+.+++.-....-.+||+... +|...-..|.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~----R~~V~k~D~N 286 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ----RCFVLKSDHN 286 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc----cceeEeccCC
Confidence 67888899999999865321 1 12221222367889999999988776666678887632 2221111111
Q ss_pred c-cc--ccceEEEEECCCCCEEEEeeCCCeEEEEeCCC----------ce-------------eeEEecCCccCeeeEEE
Q 019006 273 H-NF--EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS----------RR-------------ILYKLPGHTGSVNESVF 326 (347)
Q Consensus 273 ~-~~--~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~----------~~-------------~~~~~~~h~~~v~~~~~ 326 (347)
. .+ ...+.+|+|--|. .+++||.+=.|++|.+.. |. .+..++||..-++.|.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 1 11 1345667776554 499999999999997532 11 23468899999999999
Q ss_pred cCCCCEEEEecCCCcEEeec
Q 019006 327 HATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|...+|.+.|-...++||-
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999999999999983
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=165.93 Aligned_cols=231 Identities=15% Similarity=0.274 Sum_probs=188.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCC--CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVET--GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
.+.|+++.|+|....|++|+.|++++||.++. ...+..+.....++..+++.+.+...+++++.......||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998764 3456666666778888999998877899999999999999987765
Q ss_pred eeecCC----CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 178 IQTFPD----KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 178 ~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.+.-+. ...+....+++++++++..+..|.|.+-...+++.+.+++- .+.|..++|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 443221 22466788899999999999999999999988888877764 4679999999999999999999999999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC------ceeeEEecCCccCeeeEEEc
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS------RRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~ 327 (347)
|++.. .++..+..... ..-.+++.+++|+|||+||..|.|.|||..+ .+++..+..-...|+.+.|+
T Consensus 372 nl~~~----~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 372 NLRQN----SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ecCCc----ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99843 45544433221 1345677889999999999999999999644 45677777778899999999
Q ss_pred CCCCEEEEecC
Q 019006 328 ATEPVIGSCSS 338 (347)
Q Consensus 328 ~~~~~l~s~s~ 338 (347)
++.++||.||.
T Consensus 445 ~d~qiLAiaS~ 455 (514)
T KOG2055|consen 445 HDAQILAIASR 455 (514)
T ss_pred cchhhhhhhhh
Confidence 99999998884
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=169.77 Aligned_cols=242 Identities=20% Similarity=0.268 Sum_probs=187.0
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
..++||++.|.++...|.|..|++|+.||+|+||.+.++++++.+... +.|.+++|.+....-+++.....++.+-+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 467899999999999999999999999999999999999999887643 4677778877655444444444444444321
Q ss_pred CC--------------------------------------CceeecCCCCceEEEEEcCCCCeEEEEecC---CcEEEEe
Q 019006 174 QR--------------------------------------GAIQTFPDKYQITAVSFSDASDKIYTGGID---NDVKVWD 212 (347)
Q Consensus 174 ~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd 212 (347)
-+ .....+.+...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 011223345568899999999999987654 3688999
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+........++-..+.|.++.|+|...+|++++. ..|++||+... ..++.+.. ....+..++.+|.|..|+
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~t----g~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLT----GSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhc----CCeeeeeeeecCCCCeEE
Confidence 8766655555545677999999999999998885 47999998642 22333221 134688899999999999
Q ss_pred EeeCCCeEEEEeCCCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 293 AGSSDRMVYIWDTTSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
.|+.|+.+..||+.-. +..++++.|+..+.+|+||+.-+++++|+.||++.|+
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999999865 4556788999999999999999999999999999886
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=165.99 Aligned_cols=243 Identities=14% Similarity=0.219 Sum_probs=191.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK-KMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
..+|++|+++...+.||.+-.||.|-+|++..+-... .+.+ ....+..+++.+. ..|++.+-+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCce
Confidence 4689999999999999999999999999998764433 2333 3456777888743 3578889999999999999888
Q ss_pred eeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 178 IQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 178 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
...+.. ...+.+++.+|.+..++.|+.||.++.++...++.... +.-.++.|.+++|+|++..+++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 777654 56899999999999999999999888888776654432 333457899999999999999999999999999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
.............+.+....-+.-++++.|-. ...|++|.+.|.|.+||...+.+++.+..|.+.|.+++-.+++..+.
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 87532211000001111111123577777764 45899999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEee
Q 019006 335 SCSSDKQIYLG 345 (347)
Q Consensus 335 s~s~D~~i~i~ 345 (347)
++|.|+.|.-+
T Consensus 262 saGvd~~ii~~ 272 (691)
T KOG2048|consen 262 SAGVDPKIIQY 272 (691)
T ss_pred EccCCCceEEE
Confidence 99999997654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-22 Score=183.24 Aligned_cols=244 Identities=20% Similarity=0.366 Sum_probs=189.9
Q ss_pred ccEEEEEECCCCCe----EEEeeCCCcEEEEeccCC-----CeeeEEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEE
Q 019006 58 SAVYTMKFNPAGTV----IASGSHDRDIFLWHVHGD-----CKNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAW 127 (347)
Q Consensus 58 ~~V~~v~~~~~~~~----l~s~~~d~~v~~w~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw 127 (347)
...+.++|.+.|.. ||.|..||.|.+|+.... ...+.....|++.|..+.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45789999988765 899999999999997531 112345678999999999999654 99999999999999
Q ss_pred ECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCCCC-eEEE
Q 019006 128 DVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDASD-KIYT 201 (347)
Q Consensus 128 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~~ 201 (347)
|++.-+.-.... .....|..+.|+.....+|++++.+|++.|||++..+.+-.+... ..+..+.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998744322221 134567778888777788999999999999999988777665433 4588999999864 5666
Q ss_pred EecCC---cEEEEeCCCC-ceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 202 GGIDN---DVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 202 ~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
++.|. .|.+||+|.. .....+++|+..|.+|.|++.+ .+|++++.|+.|.+|+.... ..+..+... .
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~----~ 296 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG----EVLGELPAQ----G 296 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc----eEeeecCCC----C
Confidence 66554 5999999865 3556778999999999999966 89999999999999998753 233333321 2
Q ss_pred cceEEEEECCCCC-EEEEeeCCCeEEEEeCCCce
Q 019006 277 KNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 277 ~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~~ 309 (347)
+.+..+.|.|... .+++++-||.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 5688899999876 78889999999999886543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=166.51 Aligned_cols=271 Identities=19% Similarity=0.332 Sum_probs=184.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd 128 (347)
.....|..+|+.+.|.|....|++++.|.++++||+.+.. .-...+.||...|.+++|.+.. ..+++|+.||.+.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 3456899999999999966789999999999999996431 1123478999999999999954 5788999999999999
Q ss_pred CCCCce--e-------------------------eeeeccCcceeE---eecCCCCCCEEEEEcC-CCceEEEeCCCCCc
Q 019006 129 VETGKQ--I-------------------------KKMAEHNSFVNS---CCPSRRGPPLVVSGSD-DGTAKLWDMRQRGA 177 (347)
Q Consensus 129 ~~~~~~--~-------------------------~~~~~~~~~v~~---~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~ 177 (347)
+..... . ..-..+...+.. +.+..+. ..|++++. |+.|++||+++...
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence 863220 0 000111111222 2233333 45666665 99999999986543
Q ss_pred eee--------cCC----CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEEEecCCCCc--eeEEEECCCCCEE
Q 019006 178 IQT--------FPD----KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDM--ITGMSLSPDGSYL 241 (347)
Q Consensus 178 ~~~--------~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~v~~~~~~~~l 241 (347)
... ++. ...+.++..+..|.++++.+.|+.|+.||+++.. .+..+.++... -..-..+|++.++
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 322 111 2357888888888999888889999999997643 33444443221 1122458999999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCce-----------
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRR----------- 309 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~----------- 309 (347)
++|+.|....+|.+...+.. ...+.+|. ..+..++|.|.. .-++++++|..+++|++..+-
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~---~~~l~Ght----~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~ 405 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAP---PALLLGHT----REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSI 405 (720)
T ss_pred eccCCCcceeeeeecCccCC---hhhhhCcc----eEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchh
Confidence 99999999999998754322 23345553 468888887742 345666999999999985431
Q ss_pred ---eeEEecCCccCeeeEEEcCC
Q 019006 310 ---ILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 310 ---~~~~~~~h~~~v~~~~~~~~ 329 (347)
...++++|...+..+.++-.
T Consensus 406 v~~~~~rfk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 406 VYEYSRRFKGHLPQVLNVNSSLR 428 (720)
T ss_pred hhhhhhhhhcccccccccccccc
Confidence 12345677666666655543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=156.91 Aligned_cols=206 Identities=19% Similarity=0.322 Sum_probs=159.5
Q ss_pred eCcccceeEEEEcCCC--CEEEEecCCCeEEEEECCC----------------CceeeeeeccCcceeEeecCCCCCCEE
Q 019006 97 KGHKNAILDLHWTTDG--SQIISASPDKTLRAWDVET----------------GKQIKKMAEHNSFVNSCCPSRRGPPLV 158 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 158 (347)
.+|.+.+..+.-++-+ .+.++=+..|.|+||++.. .+.+.++..|...-+.+++++.....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566777776666544 4555667889999999752 123556667777777788887655568
Q ss_pred EEEcCCCceEEEeCCCCCcee----ecCCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeE
Q 019006 159 VSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITG 231 (347)
Q Consensus 159 ~s~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~ 231 (347)
++|..-+.|++|...++.-.. ...|...|-.+.|+|... .|++++.||.|+|||+|.+. .....+.|...|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999987754221 123556788999999754 77899999999999999873 33445889999999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCC
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~ 307 (347)
|+|+....+||+|+.||+++|||+|.++.. .++..++.| ..+|.++.|+|. ...|++++.|.+|.+||+.-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~H----k~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYH----KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEec----cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999998889999999999999999987654 566677766 367999999995 56788899999999999854
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-18 Score=154.17 Aligned_cols=287 Identities=36% Similarity=0.650 Sum_probs=222.6
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeC-CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC-EEEEecCCCeEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSH-DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLR 125 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~ 125 (347)
.....+.+|...|..++|+|++..+++++. |+.+++|+... ......+.+|...|.+++|+|++. .+++++.|+.++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 344567899999999999999999999886 99999999864 345567778999999999999998 556669999999
Q ss_pred EEECCCCceee-eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcCCCCeEEEE
Q 019006 126 AWDVETGKQIK-KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 126 iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~ 202 (347)
+||...+.... .+..|.... ...+.+.+ .++++++.|+.+++|+.+.... ...+ .+...+.++.|.|++..++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 99988777766 566666653 32555555 6778999999999999986654 3333 446789999999988888889
Q ss_pred ecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
+.|+.+.+||........... .|...+..+.|.+++..++.+ ..|+.+.+|++.... ........ ..+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~-----~~~ 373 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK----PLKTLEGH-----SNV 373 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc----eeEEecCC-----ceE
Confidence 888889999998877666554 777778999994332556655 678899999987532 11111111 116
Q ss_pred EEEEECCCCCEEEE-eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 280 LKCGWSPDGSKVTA-GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 280 ~~~~~s~~g~~l~s-gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.+++ ...++. +..++.+.+|+............+...+....+.+++..+++++.+.++.+|++
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 7788888 544444 788999999999998887777665478899999999999999999999999874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=166.35 Aligned_cols=263 Identities=17% Similarity=0.286 Sum_probs=191.9
Q ss_pred CcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-------CCeeeEEEeCcccceeEEEEcCCCCEEEEec
Q 019006 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-------DCKNFMVLKGHKNAILDLHWTTDGSQIISAS 119 (347)
Q Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 119 (347)
.++.+++..|...|+++.|+|....|++++.||++.+|++.. ..+++..+.+|.++|.|++..+++.++++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345567889999999999999999999999999999999931 2345678999999999999999999999999
Q ss_pred CCCeEEEEECC------CC----ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC---CCc
Q 019006 120 PDKTLRAWDVE------TG----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD---KYQ 186 (347)
Q Consensus 120 ~dg~i~iwd~~------~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~ 186 (347)
.||+|+.|++- +. .....+.+|...++.++++... ..+++++.||+++.|+.....+ .++.. ...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999999543 11 1234567888989888877664 4588999999999999876665 23321 223
Q ss_pred eEEEEEcCCCCe-EEEEecCCcEEEEeCCCCceEEEecC-------CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 187 ITAVSFSDASDK-IYTGGIDNDVKVWDLRKGEVSMTLQG-------HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 187 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..++.+...... .++...-+.--+++.........+.. ....++-+.++|.+...+++..|+.|+++|....
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 345555433322 22222222223333333332222221 1234677889999999999999999999998754
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~ 319 (347)
.+ +.....| ...+.++++.|+|.+|++|+.||.+++|.+..+.++.....|..
T Consensus 522 ~~----l~s~~a~----~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KI----LHSMVAH----KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cc----chheeec----cceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 33 2222222 35788999999999999999999999999988888777766653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=148.21 Aligned_cols=273 Identities=18% Similarity=0.324 Sum_probs=184.8
Q ss_pred EecCccccEEEEEECCCC-CeEEEeeCC-------CcEEEEeccCCCee--------eEEEe-CcccceeEEEEcCCCCE
Q 019006 52 LLTGHQSAVYTMKFNPAG-TVIASGSHD-------RDIFLWHVHGDCKN--------FMVLK-GHKNAILDLHWTTDGSQ 114 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~-~~l~s~~~d-------~~v~~w~~~~~~~~--------~~~~~-~h~~~v~~~~~~~~~~~ 114 (347)
.|.-|.++|+.++-+|.. ++|+|+-.+ -.+-||.+..+... +..+. .+-+.|.++.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 456788999999999955 566766542 23678998644222 11222 34568999999999999
Q ss_pred EEEecCCCeEEEEECCCCce-eeeeec-----cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCc
Q 019006 115 IISASPDKTLRAWDVETGKQ-IKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQ 186 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~ 186 (347)
+++-. |..|.+|+++.+.. +..+.. +.....+-.++|...-.-+....|+++..||+|+......+. |...
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcce
Confidence 98775 78899999987765 322221 122233344554222223445678999999999887776664 3457
Q ss_pred eEEEEEcCCCC-eEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 187 ITAVSFSDASD-KIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 187 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
+..+.|+|..+ +|++++.||.|++||.|..+ .+.++.+|...|.++.|+|. .+.++++|.|..|.+|..........
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 99999999866 56789999999999998654 67789999999999999995 67888999999999998654322111
Q ss_pred eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQI 342 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i 342 (347)
.. ..+... + .++.. ....++ -+..+ .+.++..|+.+|.+++|+.-.+ ++||-|.||.+
T Consensus 297 i~---~~~des-e--------~e~~d------seer~k--pL~dg-~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 297 IE---FEDDES-E--------SEDED------SEERVK--PLQDG-QLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred cc---cccccc-c--------Ccchh------hHHhcc--ccccc-ccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 00 000000 0 00000 000111 12222 3557889999999999999888 56788999999
Q ss_pred Eeec
Q 019006 343 YLGE 346 (347)
Q Consensus 343 ~i~~ 346 (347)
.|-.
T Consensus 356 iIs~ 359 (370)
T KOG1007|consen 356 IISS 359 (370)
T ss_pred Eeec
Confidence 8754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=152.87 Aligned_cols=273 Identities=11% Similarity=0.218 Sum_probs=176.9
Q ss_pred EEEeeCCCcEEEEeccCCC--eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEECCC-Cce--eeeeeccCcce
Q 019006 72 IASGSHDRDIFLWHVHGDC--KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDVET-GKQ--IKKMAEHNSFV 145 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v 145 (347)
+++...|+.|++|++.... .....+. +......++++|++++|+.++ .++.|.+|+++. ++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 4455778999999995322 2223332 335567889999999887664 578899999863 332 22221 22234
Q ss_pred eEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEE
Q 019006 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 220 (347)
..+.+++++..++++...++.+.+|++.+.. .+..++.......++++|+++++++++ .++.|.+||+.+.....
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 4567777776666666668999999986432 222333334567788999999887655 56899999997632211
Q ss_pred -------EecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecccccc--ccceEEEEECCCCCE
Q 019006 221 -------TLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNLLKCGWSPDGSK 290 (347)
Q Consensus 221 -------~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~ 290 (347)
.... ......+.|+|++++++++.. ++.|.+||+.........+..+....... ......+.++|+|++
T Consensus 163 ~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 1111 233578999999999988765 89999999974211222233332221111 122345789999999
Q ss_pred EEEee-CCCeEEEEeCCCceeeEEecCC---ccCeeeEEEcCCCCEEEEecC-CCcEEeecC
Q 019006 291 VTAGS-SDRMVYIWDTTSRRILYKLPGH---TGSVNESVFHATEPVIGSCSS-DKQIYLGEI 347 (347)
Q Consensus 291 l~sgs-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-D~~i~i~~~ 347 (347)
|+++. .++.|.+|++.......++.+| ......+.|+|++++|+.+.. +++|.+|++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 99885 4789999998654321222222 134678999999998887765 899999863
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=163.67 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=99.8
Q ss_pred eeEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCCe-ee---EEEeCc-ccceeEEEEcCCCCEEEEecCCCe
Q 019006 50 IMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCK-NF---MVLKGH-KNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~-~~---~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
+-.+.+|...|+.+.|+|- ..+||+|+.|..|+||.+..... .+ ....+| .-.|.++.|+|..+-|+..+..|.
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 4568899999999999994 56899999999999999962211 11 122344 346789999997777777778899
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
++|||+.+++.+..+..|...|.+..++.++ .++++...|+.|+|||.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCc
Confidence 9999999999999999999999988887765 688888999999999965
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=165.41 Aligned_cols=285 Identities=20% Similarity=0.318 Sum_probs=198.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC---cccceeEEEEcC--CCCEEEEecCCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG---HKNAILDLHWTT--DGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~ 129 (347)
+....-..+.|+|-.+.+++++..-.|.+||.... +.+..+.. ....|+.+.+-. |..++++|+.||.||||+-
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 33345678899999999999998889999998643 33333322 234688888754 4568999999999999963
Q ss_pred C-C----CceeeeeeccC------ccee-EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC--ceEEEEEcC-
Q 019006 130 E-T----GKQIKKMAEHN------SFVN-SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QITAVSFSD- 194 (347)
Q Consensus 130 ~-~----~~~~~~~~~~~------~~v~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~- 194 (347)
- + .+.+..+..-. .... -+.+....+.++ +++.-..|+|||......+..++... .++++.-+-
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 2 2 12222221110 0011 112222334444 44557899999999988888877543 466665543
Q ss_pred CCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCc--eeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDM--ITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
.++.+++|..||.|++||.|... .+.....|++. |..+.+.+.|- .|++|+.||.|++||+|.. +........
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceee
Confidence 36889999999999999988643 45567778877 99999988665 4999999999999999963 222222211
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-------ccCeeeEEEcCCCCEEEEecCCCc
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-------TGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
.|. .+-....++..+++...+|+|+. +.|.||++...+ +..++.+ .+++.+++|||..-++|.|+.|.+
T Consensus 1299 -~~~-~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1299 -AHW-EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred -ecc-ccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 111 11124788889999999999999 899999986433 3333332 357899999999999999999999
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
|.|..
T Consensus 1375 V~iYs 1379 (1387)
T KOG1517|consen 1375 VSIYS 1379 (1387)
T ss_pred EEEee
Confidence 98864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=149.53 Aligned_cols=275 Identities=20% Similarity=0.301 Sum_probs=194.7
Q ss_pred ccEEEEEECCCCC-eEEEeeCCCcEEEEeccCC--------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 58 SAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGD--------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+|+.+.|.++.. .||||+.|..|++|.+... ......+..|..+|+.+.|+|+|+.|++|+.+|.+.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5799999998776 9999999999999987521 112345788999999999999999999999999999997
Q ss_pred CC--------C--------CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEE
Q 019006 129 VE--------T--------GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVS 191 (347)
Q Consensus 129 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 191 (347)
.. + ......+..|...+..+++.+++ .++++++.|..+++||+..++....+. |..-+..++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 55 2 01123345677788888888775 578899999999999999998887764 556789999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCceEEEe-----c--------------CCC----CceeEEEECCCCCEEEEEcC--
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-----Q--------------GHQ----DMITGMSLSPDGSYLLTNGM-- 246 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~--------------~~~----~~i~~v~~~~~~~~l~t~~~-- 246 (347)
|+|.++++++-+.|...+.+.+......... + -|. .....++|+|+|..|++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 9999999999998887777765432221110 0 011 22455789999999887542
Q ss_pred --C-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC------------------CCCCEEEEeeCCCeEE
Q 019006 247 --D-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS------------------PDGSKVTAGSSDRMVY 301 (347)
Q Consensus 247 --d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------------~~g~~l~sgs~dg~i~ 301 (347)
. +..++++.... .++...++. .......+.|+ |-+-.+|.++.+ .|+
T Consensus 253 ~~g~~~~~n~tYvfsrk~l---~rP~~~lp~----~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svy 324 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDL---KRPAARLPS----PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVY 324 (434)
T ss_pred eeCCceeeceeEeeccccc---cCceeecCC----CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEE
Confidence 1 23345543321 111111111 11122222222 233345556654 899
Q ss_pred EEeCCCceeeEEec-CCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 302 IWDTTSRRILYKLP-GHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 302 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
+||.++..+++... -|=..|++++|++++..|+-.|.||-
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 99999988877654 36678999999999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=147.70 Aligned_cols=276 Identities=14% Similarity=0.232 Sum_probs=185.6
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEECCCCceeeee--eccCcce
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWDVETGKQIKKM--AEHNSFV 145 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v 145 (347)
..+|++-..|.|++||... ...+..+++|...+..+.|.. ....+.+|+.||+|++||++.......+ ..+.+..
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5688888999999999864 556778899999999999976 4567899999999999999876554333 3343223
Q ss_pred eEeecCCCCCCEEEEEc----CCCceEEEeCCCCCc-eeec--CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCc
Q 019006 146 NSCCPSRRGPPLVVSGS----DDGTAKLWDMRQRGA-IQTF--PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 217 (347)
..+........++++|+ .+-.+.+||+|..+. +..+ .|...|+++.|+|.. +.|++|+.||.|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 22222222345666664 356789999997765 4443 466789999999975 478899999999999987542
Q ss_pred ---eEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc----cccccceEEEEECCCCC
Q 019006 218 ---VSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ----HNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 218 ---~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~ 289 (347)
.+.....|...|..+.|...+ +.+.+-+...+..+|++....+....-....... ......+..+-...++.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 122223456679999998765 4588888899999999976442211100000000 00011222222233555
Q ss_pred EEEEeeC-CCeEEEEeC---CCce---eeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSS-DRMVYIWDT---TSRR---ILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~-dg~i~vwd~---~~~~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++.++. -|...++-+ .++. .+..+.+ |..-|.++.|...+.++.|||+||.+.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 6555544 555555533 3333 3345555 667789999999999999999999999997
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=138.90 Aligned_cols=246 Identities=15% Similarity=0.272 Sum_probs=172.0
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCC---------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
..|++-+++|.+++|+.|..+|.|.+..+..- .......++|..+|..++|. .++|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35777789999999999999999999987421 12234568999999999998 44677665 59999997
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.+..... .++-++|.+....... ...--+|+++...|..+-++.++.|+.+
T Consensus 88 W~E~~es----------------------------~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 88 WNEEEES----------------------------LATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ehhhhhh----------------------------ccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEE
Confidence 6532210 1122334432211110 1112358899999999988888899999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc------cccceEEE
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN------FEKNLLKC 282 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 282 (347)
+.||+++|+..+++.+|++.|.++.-......+++|+.||++++||.++ .++++.+....+. ....| .
T Consensus 139 y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt----~k~v~~ie~yk~~~~lRp~~g~wi--g 212 (325)
T KOG0649|consen 139 YQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT----QKHVSMIEPYKNPNLLRPDWGKWI--G 212 (325)
T ss_pred EEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc----cceeEEeccccChhhcCcccCcee--E
Confidence 9999999999999999999999999877778899999999999999985 3455555433221 11122 3
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
+..-+..+|++|+.- .+.+|++++.+....++ -...+-.+.|..+ .+.++|....|.-|
T Consensus 213 ala~~edWlvCGgGp-~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 213 ALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred EEeccCceEEecCCC-ceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeee
Confidence 344567799988754 79999999888766553 2345666777554 45556544444433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=155.91 Aligned_cols=219 Identities=17% Similarity=0.288 Sum_probs=175.3
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+|++......++++||..+.|+|||+.. ......+++|++.|+++.++..+.+|++++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 4555555568999999999999999963 234456899999999999999999999999999999999998877767765
Q ss_pred c-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCC
Q 019006 141 H-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 141 ~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 216 (347)
. +..+.-+.+++....+|.+++++|.+.+||+....++..+ .|..+...++|+|..+ .|++.+.|.+|++||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 5 4455567778888889999999999999999988777655 3556778899999866 5668899999999999876
Q ss_pred ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.....+. ...+...++|.++|.+|+.|...|.|..||+|.. ..++..+..| ...|.+++|-|.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~---k~Pv~v~sah----~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST---KAPVAVRSAH----DASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC---CCCceEeeec----ccceeEEEeeecc
Confidence 5544443 3457899999999999999999999999999863 2345555554 3458888886653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=149.09 Aligned_cols=209 Identities=21% Similarity=0.379 Sum_probs=167.9
Q ss_pred EEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 94 MVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
..+.||+++|..++|.| ++..|++||.|.+|.||.+-.+ +.+..+.+|...|..+.+++...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34679999999999999 5667999999999999997543 235677889999999999999989999999999
Q ss_pred ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCCCCEEEEE
Q 019006 166 TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPDGSYLLTN 244 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~t~ 244 (347)
+|.+||+.++..+-++.|...|.++.|+.+|..+++.+.|.+|||||.++++.+.+-.+|.+. -..+.|-.++. ++|.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTT 233 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeee
Confidence 999999999998888888899999999999999999999999999999999998888778652 33456777787 5555
Q ss_pred c----CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCCce
Q 019006 245 G----MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 245 ~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~~~ 309 (347)
| .+..+.+||....+... ....+.. ...+.---|.+|.+.+. +|-.|+.|+.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~-~~~elDt-----SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPI-ALQELDT-----SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcc-eeEEecc-----CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4 57799999987654331 2222221 22344445789988886 56689999999987655
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-19 Score=146.25 Aligned_cols=251 Identities=22% Similarity=0.391 Sum_probs=176.6
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEecc--------C-----C--CeeeEEEeCcccceeEEEEcCCCCEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH--------G-----D--CKNFMVLKGHKNAILDLHWTTDGSQI 115 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~--------~-----~--~~~~~~~~~h~~~v~~~~~~~~~~~l 115 (347)
..|..|+.+|+++.|+|+|.+||||+.+|.|.+|... + . +...+.+.+|...|..++|+|++.++
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 4578999999999999999999999999999999875 1 0 22345678999999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-------------
Q 019006 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP------------- 182 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~------------- 182 (347)
++++.|..+++||+..|.....+..|...+..+++.+.+. ++++-+.|...+.+.+...+.++...
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred eeeeccceEEEEEeccceeEeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 9999999999999999999999999999999998887654 56677777766666554332221111
Q ss_pred -------C----CCceEEEEEcCCCCeEEEEec----C-----CcEEEEeCCC-CceEEEecCCCCceeEEEECC-----
Q 019006 183 -------D----KYQITAVSFSDASDKIYTGGI----D-----NDVKVWDLRK-GEVSMTLQGHQDMITGMSLSP----- 236 (347)
Q Consensus 183 -------~----~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~----- 236 (347)
+ +.-...++|+|+|..+++... . +..++|+-.. .++...+..-..+...+.|+|
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 1 112455788999988876431 1 2345664321 123334444444444444433
Q ss_pred -------------CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 237 -------------DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 237 -------------~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
.+..+|.+. .+.+.+||.....|.. ..... +-..+..++|++||..|+..|.||...+-
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~----~v~ni---hy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLA----VVDNI---HYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred ccccccccccccccceEEEEee-cceEEEeccccccceE----EEeee---eeeeecceeecCCCcEEEEeccCCceEEE
Confidence 222344444 4589999987543321 11111 12468899999999999999999998888
Q ss_pred eCCCcee
Q 019006 304 DTTSRRI 310 (347)
Q Consensus 304 d~~~~~~ 310 (347)
..+..++
T Consensus 370 tfe~~el 376 (434)
T KOG1009|consen 370 TFEPWEL 376 (434)
T ss_pred EEcchhc
Confidence 7766554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=141.23 Aligned_cols=235 Identities=16% Similarity=0.237 Sum_probs=172.6
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP 182 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 182 (347)
..++.|++.|.+|+.|+.||.|.|||+.+...-+.+..|...+.++++++++. +|++++.|..|++||+..+.+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEE
Confidence 57899999999999999999999999999888788889999999999998875 67899999999999999999999988
Q ss_pred CCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEEEecCC-----CCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 183 DKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 183 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
....|..+.|+|.....+.++ .+..-.+-++..++. ..+... +..-.+..|.+.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 888999999998765443332 333344444433221 111100 0111223588999999999999999999987
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------ee--eEEecC--CccCeeeEE
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-------RI--LYKLPG--HTGSVNESV 325 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-------~~--~~~~~~--h~~~v~~~~ 325 (347)
+. .++..++-.. ...|..+.++..|++|+.-+.|+.||.|+...- ++ .+++.. ....=..+.
T Consensus 184 t~----e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 184 TL----ECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred hh----eeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 53 4444443322 245778889999999999999999999987521 11 122211 011225778
Q ss_pred EcCCCCEEEEec-CCCcEEeec
Q 019006 326 FHATEPVIGSCS-SDKQIYLGE 346 (347)
Q Consensus 326 ~~~~~~~l~s~s-~D~~i~i~~ 346 (347)
|+.++.++..++ ..+.+|||+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred ecCCccEEEeccccceeEEEEe
Confidence 999998776555 568899996
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=139.79 Aligned_cols=236 Identities=22% Similarity=0.404 Sum_probs=172.6
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCC-------ce-----eeeee-ccCcceeEeecC------CCCCCEEEEEcC
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETG-------KQ-----IKKMA-EHNSFVNSCCPS------RRGPPLVVSGSD 163 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~-----~~~~~-~~~~~v~~~~~~------~~~~~~~~s~~~ 163 (347)
...+.|+|||..|++-+.|..+++|++-.. .. ...+. .....|.++++. .+...++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 356789999999999999999999987321 00 01111 123345555553 233468889999
Q ss_pred CCceEEEeCCCCCceeecC---CC---CceEEEEEcCCCCeEEEEecCCcEEEEeC-CCCce--EEEe-----cCCCCce
Q 019006 164 DGTAKLWDMRQRGAIQTFP---DK---YQITAVSFSDASDKIYTGGIDNDVKVWDL-RKGEV--SMTL-----QGHQDMI 229 (347)
Q Consensus 164 d~~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~--~~~~-----~~~~~~i 229 (347)
+.-|++||.-+++....+. +. ....+++|+|||..|++|. .+.|++||+ |.|.. .+.. .+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999998887665543 22 2357899999999998765 568999998 65542 1211 2335678
Q ss_pred eEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCCC
Q 019006 230 TGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTTS 307 (347)
Q Consensus 230 ~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~~ 307 (347)
.+++|+|... .++.++...++-|+.-.. ..++..+-+|. +.|+.+.|.++|+.|.+|+. |-.|..||++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~----~~pl~llggh~----gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDG----RRPLQLLGGHG----GGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCC----CCceeeecccC----CCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 9999999654 888999888888886553 23445555553 57899999999999999985 66899999975
Q ss_pred -ceeeEEecCCccCe---eeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 308 -RRILYKLPGHTGSV---NESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 -~~~~~~~~~h~~~v---~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+++.+..|.+.. .-....|++++||+++.||.|++||+
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 56778888887633 23455788999999999999999985
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=138.32 Aligned_cols=219 Identities=17% Similarity=0.308 Sum_probs=146.8
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc----eeeeeeccCcceeEeecC-CCCCCEEEEEcCCCceEEE
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPS-RRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~d~~i~iw 170 (347)
-.+|.+-|.++.|.+.|+++++|+.|++++|||.++.. +......|.+.+..+.+. |.-+..+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999975432 334455566666655442 3334566666677777776
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC--CCEEEEEcCCC
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDC 248 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~t~~~d~ 248 (347)
.-.... +. ..=+-| ....++......|+++.|.|. |-.|++++.||
T Consensus 89 EE~~~~----~~-----------------------~~~~~W-----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 89 EEQEKS----EE-----------------------AHGRRW-----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred eecccc----cc-----------------------ccccee-----EEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 532100 00 000011 122334445567999999984 77899999999
Q ss_pred cEEEEeCCCCCCcC--ceeEEEe---ccccccccceEEEEECCC---CCEEEEeeCC-----CeEEEEeCCCc----eee
Q 019006 249 KLCIWDMRPYAPQN--RCVKILE---GHQHNFEKNLLKCGWSPD---GSKVTAGSSD-----RMVYIWDTTSR----RIL 311 (347)
Q Consensus 249 ~i~~wd~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~s~~---g~~l~sgs~d-----g~i~vwd~~~~----~~~ 311 (347)
.++||+.-+..... .....+. ...........++.|+|. .++||.|+.+ +.++||..... ..+
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 99999865321110 1111111 011122346778889874 5789999876 57888876543 245
Q ss_pred EEecCCccCeeeEEEcCC----CCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHAT----EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~----~~~l~s~s~D~~i~i~~~ 347 (347)
.++++|..+|.+++|.|. .++||+++.|| |+||++
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 678999999999999997 36999999999 999975
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=136.63 Aligned_cols=232 Identities=15% Similarity=0.205 Sum_probs=168.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCce
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAI 178 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~ 178 (347)
..+..+.|..+...|..|+.|| -++|..+..............|....++. .+++..+.+ ..+++.+++.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456666888888888888888 56777665433222222233344444443 244444433 45899999988888
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC---CCCceeEEEECCCCCEEEEEc--CCCcEEEE
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNG--MDCKLCIW 253 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~--~d~~i~~w 253 (347)
..+.....|.++.++. +.|++.-.+ .|+|||++.-+...++.. +...+.++++++.+.|++--+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 8777777899998875 445555544 499999999888776653 333455666666667887533 35899999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCCc--cCeeeEEEcCCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGHT--GSVNESVFHATE 330 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~ 330 (347)
|+.+. +.+..+..| ++.+-+++|+++|.+||++|..|+ ||||...+|+.+++++.-. ..|.+++|+|+.
T Consensus 159 d~~nl----~~v~~I~aH----~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 159 DTINL----QPVNTINAH----KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred Ecccc----eeeeEEEec----CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 98753 345566666 467889999999999999999997 8999999999999887543 357899999999
Q ss_pred CEEEEecCCCcEEeecC
Q 019006 331 PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~~ 347 (347)
++|+.+|..++|+||+|
T Consensus 231 ~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKL 247 (391)
T ss_pred CeEEEecCCCeEEEEEe
Confidence 99999999999999985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=154.77 Aligned_cols=234 Identities=17% Similarity=0.212 Sum_probs=161.7
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCce--eeeeeccCcceeEeecCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQ--IKKMAEHNSFVNSCCPSR 152 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~ 152 (347)
+..|++||.++.. ...+..|...+.+..|+|||++|+.++.+ ..|++||+.+++. +..+.. ......+++
T Consensus 183 ~~~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986543 34566778889999999999999987654 4799999987753 222222 233467778
Q ss_pred CCCCEEEEEcCCCceEEE--eCCCCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCC-ceEEEecCCCCc
Q 019006 153 RGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKG-EVSMTLQGHQDM 228 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~ 228 (347)
++..++++.+.+|.+.+| |+.++.......+...+....|+|+++.++..+ .+|...+|++... .....+ .+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 776666666678876655 665555433333445677899999999777554 5677888876432 112222 3333
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC--C
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT--T 306 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~--~ 306 (347)
....|+|+|++++..+.++ +.+||+.... .. .+.... ....+.|+|||++|+.++.++.+.+|++ .
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~----~~-~lt~~~-----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGS----TE-VLSSTF-----LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCC----eE-EecCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4578999999998888765 5569986432 11 111111 1235679999999999999998888875 3
Q ss_pred CceeeEEecCCccCeeeEEEcCCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
+++.+.++.+|.+.+...+|+|--
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCCC
Confidence 577888999999999999999853
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-20 Score=164.59 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=208.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|.||..+|+|..|...|..+++|+.|..++||..+ +...+..++||.+.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 367999999999999999999999999999999975 3455677899999999999999989999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----ecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----TFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+..+..+.+|.+.|++++++|.. +.+.||++++||.+-...+. .+..+..+.++-|...+.-+++++.|+
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 99999999999999999998753 67899999999987222111 122334567777777788899999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.-..|.+... ..+...+.-+.++.+ ..+.+++-.+-.+++|++..+. ....+.+| ...+..+.++
T Consensus 339 ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----l~H~l~gh----sd~~yvLd~H 404 (1113)
T KOG0644|consen 339 EARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----LLHNLMGH----SDEVYVLDVH 404 (1113)
T ss_pred ccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccch----hhhhhccc----ccceeeeeec
Confidence 8887765321 112222221222222 2466667777889999987532 22333333 4567888899
Q ss_pred CCCCEE-EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 286 PDGSKV-TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 286 ~~g~~l-~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
|-...+ .+++.||...|||.-.+-.++.+.-....+.+-+|+++|..++....-|.++|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 976655 589999999999998887765433224567778999999999888888888875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=155.63 Aligned_cols=295 Identities=18% Similarity=0.269 Sum_probs=198.7
Q ss_pred eEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCC------eeeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 51 MLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDC------KNFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
..+..|...|..++.++. +.+++|||.||+|++|++..-. +.......-...+..+...+.++.+|.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 446678899999988865 4999999999999999984211 111222323567888888889999999999999
Q ss_pred EEEEECCCC--ce-----ee--eeeccCcceeEeecCCCCC-CEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEE
Q 019006 124 LRAWDVETG--KQ-----IK--KMAEHNSFVNSCCPSRRGP-PLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAV 190 (347)
Q Consensus 124 i~iwd~~~~--~~-----~~--~~~~~~~~v~~~~~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~ 190 (347)
|++.+++-. +. .+ .....+..+..-.+..... ..++.+..-+.|..||++......... .++-|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999988752 11 11 1111222222222222222 378888899999999999776655543 34679999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC-CCCceeEEEECCCC---CEEEEEc--CCCcEEEEeCCCCCCcCce
Q 019006 191 SFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG-HQDMITGMSLSPDG---SYLLTNG--MDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~---~~l~t~~--~d~~i~~wd~~~~~~~~~~ 264 (347)
+.+|.+..+++|+..|.+.+||+|-+..+..+.. +..+|+.+..+|.. ...++++ ..+.|.+|++.....+. .
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~-v 1280 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT-V 1280 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE-E
Confidence 9999999999999999999999998887766542 34578888877643 3555444 46899999987542211 1
Q ss_pred eEEEec------cc-c-----ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee---------------------
Q 019006 265 VKILEG------HQ-H-----NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL--------------------- 311 (347)
Q Consensus 265 ~~~~~~------~~-~-----~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~--------------------- 311 (347)
+..-.+ .. . ........+.+...+.++.+|+.|..|+.||....+.-
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~ 1360 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLS 1360 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcccc
Confidence 110000 00 0 01112344556666789999999999999996432211
Q ss_pred --------E-------------------Ee--------cCCccCeeeEEEcCCC-CEEEEecCCCcEEeec
Q 019006 312 --------Y-------------------KL--------PGHTGSVNESVFHATE-PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 312 --------~-------------------~~--------~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~i~~ 346 (347)
+ +. .+|...|+++++-... .+|++++.||.|.||+
T Consensus 1361 ~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1361 TIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 00 1466677777765544 6999999999999996
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-17 Score=140.71 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=161.3
Q ss_pred cccEEEEEECCCCCeEEEee-CCCcEEEEeccCCCee-eEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCc
Q 019006 57 QSAVYTMKFNPAGTVIASGS-HDRDIFLWHVHGDCKN-FMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDVETGK 133 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~ 133 (347)
.+....+.++|++++|++++ .++.|..|++.+.... .............++|+|++++|++++. ++.|.+|++++..
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 35567889999999887664 5788999998632211 1111112234678999999999888764 7899999986422
Q ss_pred ----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-------ecCCCCceEEEEEcCCCCeEEEE
Q 019006 134 ----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-------TFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 134 ----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.+..+. +......+.+++++..++++...++.|.+||+.+...+. ..+.......+.|+|++++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 122221 222344566777776667778888999999997643221 12223446789999999999888
Q ss_pred ec-CCcEEEEeCCC--Cc--eEEEecCC------CCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEec
Q 019006 203 GI-DNDVKVWDLRK--GE--VSMTLQGH------QDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 203 ~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
.. ++.|.+||+.. ++ ....+..+ ......+.++|++++++++.. ++.|.+|++...............
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999873 32 22233221 112335889999999998854 689999998643211122222111
Q ss_pred cccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCC
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTT 306 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~ 306 (347)
......+.++|||++|+++.. ++.|.+|+..
T Consensus 273 -----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 273 -----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 113446789999999998775 8899999764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-18 Score=153.43 Aligned_cols=252 Identities=19% Similarity=0.286 Sum_probs=181.1
Q ss_pred CeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCee-----eEEEeCcccceeEEEEcCCC--CEEEEecC
Q 019006 49 PIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKN-----FMVLKGHKNAILDLHWTTDG--SQIISASP 120 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~--~~l~s~~~ 120 (347)
|...+. -...|.++.|+| +..+||.|..+|.|.+||+...... -.....|..+++.+.|..+- .-+++++.
T Consensus 235 Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 235 PELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred ceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 334443 357899999999 5678899999999999999654331 12345689999999997644 44999999
Q ss_pred CCeEEEEECCCCcee-----eeeec-------cCcceeEeecCCCCCCEEEEEcCCCceEEEeCC---CCC-----ce-e
Q 019006 121 DKTLRAWDVETGKQI-----KKMAE-------HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QRG-----AI-Q 179 (347)
Q Consensus 121 dg~i~iwd~~~~~~~-----~~~~~-------~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~---~~~-----~~-~ 179 (347)
||.|..|+++.-... ..... ....+..+.+.+..+..++.|+.+|.|.--+-. ... .. .
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 999999987643221 01111 122355677778888889999999999873322 221 11 2
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCC
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~ 257 (347)
...+...|+++.++|-+..++..+.|.++++|... ...+...+..+.+.+++++|||... .++++..||.|.+||+..
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 22456789999999988877666669999999887 6667777788888899999999754 567777899999999974
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
... .++...... ......+.|++.|+.|++|...|.+++|++..
T Consensus 474 ~~~--~Pv~s~~~~----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDE--EPVLSQKVC----SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc--CCccccccc----ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 322 122221111 23456677899999999999999999999853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=143.17 Aligned_cols=203 Identities=23% Similarity=0.403 Sum_probs=157.5
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCC------CeeeEEEeCcccceeEEEEcCC-CCEEEEecCCCe
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGD------CKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKT 123 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 123 (347)
++.||++.|..++|+| +...+||||.|.+|.+|.+..+ ..+...+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5789999999999999 5578999999999999998643 2345678999999999999995 457899999999
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CC-CceEEEEEcCCCCeEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DK-YQITAVSFSDASDKIYT 201 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~~ 201 (347)
|.+||+.+++.+-++. |...+.+++++.++ .++++.+.|+.|++||.+++..+..-. |. .+-..+.|-.++..+-+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999887776 99999999998876 478999999999999999998887653 32 34455667767774444
Q ss_pred Ee---cCCcEEEEeCCCCceE---EEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 202 GG---IDNDVKVWDLRKGEVS---MTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~---~dg~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
|. .+..+-+||...-+.. .++... +.|.---|.++.+.+..+| .|+.|+.|.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 43 4678999987654332 233322 2344445678777766555 689999999864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-17 Score=148.12 Aligned_cols=287 Identities=21% Similarity=0.284 Sum_probs=202.4
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC---CCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG---DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
-|.-.+++.+++|+++.+|+|..||.|.+|.-.+ .......+.=|.+.|.++.|+++|.+|++||..|.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3666789999999999999999999999997644 2223445677899999999999999999999999999999998
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC---ceeecCC---------CCceEEEEEcCCCCeE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG---AIQTFPD---------KYQITAVSFSDASDKI 199 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~---------~~~v~~~~~~~~~~~l 199 (347)
++ .+-+.--++.+..+..++++ .+.+....|+.|.+....... .++.+.. ..-.+.++++|-.+.+
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 87 23333446677778887665 455666779999888654322 2222211 2235678889977788
Q ss_pred EEEecCCcEEEEeCCCCceEEEec-----------CCCCceeEEEECCCCCEEEEEc--------CC--CcEEEEeCCCC
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQ-----------GHQDMITGMSLSPDGSYLLTNG--------MD--CKLCIWDMRPY 258 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~i~~v~~~~~~~~l~t~~--------~d--~~i~~wd~~~~ 258 (347)
+-.+..|.|.+||+-+.+.+..++ .+...++.++.+..|++++|.- .| -.+++|-..+.
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 888899999999998766554432 1123467777888899999863 33 36788976654
Q ss_pred CCcCceeEEE-eccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCC------ce----eeEEecCCccCeeeEEE
Q 019006 259 APQNRCVKIL-EGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTS------RR----ILYKLPGHTGSVNESVF 326 (347)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~------~~----~~~~~~~h~~~v~~~~~ 326 (347)
.........+ ..|. ...+..+..++... ..++++.||.+++|-... +. +...-..|..++...+|
T Consensus 441 ~kt~~L~T~I~~PH~---~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 441 SKTFILNTKINNPHG---NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cceeEEEEEEecCCC---ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 3333333332 2232 12233344455444 899999999999997732 21 12222247889999999
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+|.+| ++|.|++|.|||.
T Consensus 518 s~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 518 SQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred cCCCcEE-EEecCCEEEEecC
Confidence 9999555 7888999999984
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=153.11 Aligned_cols=208 Identities=22% Similarity=0.382 Sum_probs=154.8
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC---------eeeEEEeCcccceeEEEEcCCCCEEEEe
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC---------KNFMVLKGHKNAILDLHWTTDGSQIISA 118 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 118 (347)
.|+..|++|.++|.|+...+++..+.+||-||+|+.|++..+. .....+.||.+.|+.+++|+....|+++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 5788999999999999999999999999999999999775221 1223578999999999999999999999
Q ss_pred cCCCeEEEEECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--------CCceE
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--------KYQIT 188 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~ 188 (347)
+.||+++.|+...... ..+... ......+.+........++...-+.--+++......+..++. ...++
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999766544 222211 111122222221111111111112222233333333333321 13577
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+..+|.....+++..|+.|+++|..+++..+....|...++++++.|+|.+|++++.|+.+++|.+.
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=132.63 Aligned_cols=278 Identities=22% Similarity=0.335 Sum_probs=194.0
Q ss_pred eEecCccccEEEEEECC---CCCeEEEeeC----CCcEEEEeccCCCeeeEEE--eCcccceeEEEEcCCC-----CEEE
Q 019006 51 MLLTGHQSAVYTMKFNP---AGTVIASGSH----DRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTTDG-----SQII 116 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~---~~~~l~s~~~----d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~~~-----~~l~ 116 (347)
..+..+ =.++++.|+. .+..||.|+. .+.|.+-.+.....++... ..|..+++.+.|.|+. ++|+
T Consensus 39 y~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLA 117 (364)
T KOG0290|consen 39 YTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLA 117 (364)
T ss_pred EEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhh
Confidence 344444 3588999983 2457888875 3456665554333333222 3688899999999976 3455
Q ss_pred EecCCCeEEEEECCCCc--ee--e-----eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeecCC
Q 019006 117 SASPDKTLRAWDVETGK--QI--K-----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTFPD 183 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~--~~--~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~ 183 (347)
|++ ..+|+|.+...+ .. . +-..+...+.++.+...+++++.+.+-|-++.+||+..+. ..+.+.|
T Consensus 118 Ts~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 118 TSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred ccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 543 579999987421 11 0 1112345666777777788899999999999999999863 2455678
Q ss_pred CCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEec---CCCCceeEEEECCC-CCEEEEEcCC-CcEEEEeCCC
Q 019006 184 KYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQ---GHQDMITGMSLSPD-GSYLLTNGMD-CKLCIWDMRP 257 (347)
Q Consensus 184 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~v~~~~~-~~~l~t~~~d-~~i~~wd~~~ 257 (347)
+.+|..++|...+. .|++.+.||.+|+||+|.-+....+. ....+...++|++. -+++||-..| ..|.+-|+|.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 89999999998654 77899999999999999765333222 22346778899874 4678887666 4799999985
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCcee------eEEecCCccCeeeEEEcCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRI------LYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~ 330 (347)
. ...+..+++|. ..|..++|.|. ...|++++.|..+.+||+...-. +-.+. -+++|+.+.|++..
T Consensus 276 P---~tpva~L~~H~----a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 276 P---CTPVARLRNHQ----ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred C---CcceehhhcCc----ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence 3 34455677764 56889999996 57899999999999999875322 11122 35789999999765
Q ss_pred -CEEEEecCC
Q 019006 331 -PVIGSCSSD 339 (347)
Q Consensus 331 -~~l~s~s~D 339 (347)
.+++.+...
T Consensus 348 ~Dwiai~~~k 357 (364)
T KOG0290|consen 348 PDWIAICFGK 357 (364)
T ss_pred CCEEEEEecC
Confidence 477776654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=150.04 Aligned_cols=242 Identities=19% Similarity=0.344 Sum_probs=162.8
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
..|.||++-|+++.|+.+|.+|++|+.|-.+.|||.........+-.||...|.++.|.| +.+.+++|+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 358899999999999999999999999999999998743333445679999999999998 467889999999999999
Q ss_pred CCCC----------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-------e----cCCCCce
Q 019006 129 VETG----------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-------T----FPDKYQI 187 (347)
Q Consensus 129 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-------~----~~~~~~v 187 (347)
+... .....+..|...|..++..+.++..+.+++.||+|+-+|++...... . .+.....
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9752 22334556777777788888888899999999999999998632111 0 1122356
Q ss_pred EEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 188 TAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 188 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
.++.++|..+ +|++|+.|-..++||.|.-.. .+... .. +.++|-. .++.++.|-.... +
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~--~~--~~~~pp~-------~~~cv~yf~p~hl-------k 263 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSD--GT--MNTCPPK-------DCRCVRYFSPGHL-------K 263 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCC--cc--ccCCCCc-------ccchhheecCccc-------c
Confidence 7889998755 778899999999999653211 11110 00 1112110 0111222211000 0
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
...+........+.-+.|+|+|.-|+..-..-.||+||+..++...
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000000001124556799999877766666689999998776544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=145.73 Aligned_cols=194 Identities=22% Similarity=0.392 Sum_probs=145.4
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
.+++|+++|..|++|+.||++|+|+.... ........|...|.++.|+|||+.|++-+.| ..+||+.+++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 68899999999999999999999997543 3445567899999999999999999999999 899999999855443331
Q ss_pred -cCc-ceeEeecCCCC--CC--EEEEEcCCCceEEEeCCCCCc------eeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 141 -HNS-FVNSCCPSRRG--PP--LVVSGSDDGTAKLWDMRQRGA------IQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 141 -~~~-~v~~~~~~~~~--~~--~~~s~~~d~~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
... ....|.+..++ .. +++....-+.|+.||+..... .+.......+++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 111 22234443322 12 233334456677777642211 1112233479999999999999999999999
Q ss_pred EEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 209 KVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 209 ~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+++..+-+..+-. +.|...|+.+.|+|+.+++++.+.|.+..+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99998876655433 5788999999999999999999999988888764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=138.80 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=128.6
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc------
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ------ 261 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~------ 261 (347)
.+++|+.++..+++|+.||++|+|+..+.........|...|.++.|+|||++|++.+.| ..++|++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999987777777778888899999999999999999999 8999998754100
Q ss_pred --------------C--ceeEEE---ecc------------c---------cccccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 262 --------------N--RCVKIL---EGH------------Q---------HNFEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 262 --------------~--~~~~~~---~~~------------~---------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
. ..+... ..+ . ......+.+++.++||+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 0 000000 000 0 00123678899999999999999999999
Q ss_pred EEeCCCceeeEEe-cCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 302 IWDTTSRRILYKL-PGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 302 vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++..+.++++.. +.|...|+.+.|+|+.+.+++.+.|.++.+-.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999998888755 48999999999999999999999998887754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-17 Score=132.04 Aligned_cols=200 Identities=17% Similarity=0.271 Sum_probs=161.1
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC-CCC-
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV-ETG- 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~- 132 (347)
..+|+|.+|+++++.+|.+-+...|.||...+. .+....++.|...|+.++|+|..+.|++|+.|..-++|.. ..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999988643 4567788999999999999999999999999999999988 433
Q ss_pred -ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce-----eecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 133 -KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI-----QTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 133 -~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+....+..++.....+.++|.. +.|++|+.-..|-+|-.++...- ...+....|++++|+|.+-.+++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3344455677777888888775 56888999999999987765543 2234567899999999999999999999
Q ss_pred cEEEEeCC-----C-------------CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 207 DVKVWDLR-----K-------------GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 207 ~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+.|+|..- . |+...++....+.+..+.|+|+|+.|+=.+.|..+.+=|-..
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99998631 1 111222323446799999999999999999999999988653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=135.60 Aligned_cols=244 Identities=22% Similarity=0.340 Sum_probs=178.3
Q ss_pred CccccEEEEEECCC----CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPA----GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~ 129 (347)
.|....+.++|+-+ ..+||.||.-|.|++.|+... +....+.+|..+|..+.+.|+. ++++++|.|..||+|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 47788899999754 468999999999999998643 3445688999999999999965 68899999999999999
Q ss_pred CCCceeeee---eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee---------------ecCC--------
Q 019006 130 ETGKQIKKM---AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ---------------TFPD-------- 183 (347)
Q Consensus 130 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---------------~~~~-------- 183 (347)
++..++..+ .+|...|.++.++.++. .+++++.|.++++|++....... .++.
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 999887766 45788899998988775 88999999999999987332111 0111
Q ss_pred ------CCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCc-------------eEEEecCCCCceeEE--EECCCCCEE
Q 019006 184 ------KYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGE-------------VSMTLQGHQDMITGM--SLSPDGSYL 241 (347)
Q Consensus 184 ------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~i~~v--~~~~~~~~l 241 (347)
...|-|+.|- ++++++-+.++.|..|..- -.+ ...++.-....|.-+ +|.|-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 1112222222 4678888999999999761 111 112222222334444 556778899
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.|...|.+.+||++...+. .+. .+..+ .-...|...+|+.||..|+...+|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~-~~t-tl~~s--~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPP-KCT-TLTHS--KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCc-cCc-eEEec--cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999976553 221 22111 123568899999999999999999999999854
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-17 Score=145.05 Aligned_cols=261 Identities=13% Similarity=0.183 Sum_probs=180.9
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce--ee----eeeccCcceeEeecC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ--IK----KMAEHNSFVNSCCPS 151 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~~ 151 (347)
+.+.+|++.....+...+. -...|+++.|+| +..+++.|..+|+|.+||+..+.. .. ....|...+..+.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4689999965534433333 356899999999 456788888999999999987654 21 123466667666654
Q ss_pred CCCC-CEEEEEcCCCceEEEeCCCCCc------eeec-------CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCC-
Q 019006 152 RRGP-PLVVSGSDDGTAKLWDMRQRGA------IQTF-------PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRK- 215 (347)
Q Consensus 152 ~~~~-~~~~s~~~d~~i~iwd~~~~~~------~~~~-------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~- 215 (347)
.... .-+++++.||.|..|+++.-.. .... .....++++.|.+.. ..|+.|+.+|.|.--+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3221 3478888999999998764321 1111 123468899998764 4788999999988743222
Q ss_pred --Cc-----eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 216 --GE-----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 216 --~~-----~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
.. ....+..|.+.|+++.++|=+..++..+.|-+++||..... ..++..+..+ ...+..++|||..
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---~~Pl~~~~~~----~~~v~~vaWSptr 453 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---ASPLLSLDSS----PDYVTDVAWSPTR 453 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC---CCcchhhhhc----cceeeeeEEcCcC
Confidence 21 12244567889999999997766665555999999986521 1111112111 2458999999986
Q ss_pred C-EEEEeeCCCeEEEEeCCCc--eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 S-KVTAGSSDRMVYIWDTTSR--RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~-~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
. .++++..||.|.+||+... +.+.+.+-+....+.+.|++.+++|+.|...|++++.++
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 4 5677888999999998654 344455555667788899999999999999999999875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-17 Score=130.83 Aligned_cols=236 Identities=21% Similarity=0.343 Sum_probs=174.1
Q ss_pred CccccEEEEEECCCC-----CeEEEeeCCCcEEEEeccCCCeee---EE-----EeCcccceeEEEEcC-CCCEEEEecC
Q 019006 55 GHQSAVYTMKFNPAG-----TVIASGSHDRDIFLWHVHGDCKNF---MV-----LKGHKNAILDLHWTT-DGSQIISASP 120 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~-----~~l~s~~~d~~v~~w~~~~~~~~~---~~-----~~~h~~~v~~~~~~~-~~~~l~s~~~ 120 (347)
.|.=+++.+-|.|+. ++|||.+. .+++|.+..+...+ .. -..+..++++..|+. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 577788999999975 46777655 69999986321111 11 124567899999986 6678999999
Q ss_pred CCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeecCC-CCceEEEEEc
Q 019006 121 DKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTFPD-KYQITAVSFS 193 (347)
Q Consensus 121 dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~-~~~v~~~~~~ 193 (347)
|-+..|||++++. ....+..|...|.+++|...+..+|++.+.||.+|+||+|.... +..-+. ......++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 24567789999999999998888999999999999999986542 222233 4567788888
Q ss_pred CCC-CeEEEEe-cCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCC--cCceeEE
Q 019006 194 DAS-DKIYTGG-IDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAP--QNRCVKI 267 (347)
Q Consensus 194 ~~~-~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~ 267 (347)
+.. +++++-. ....|.+.|+|.. ..+..+++|+..|++++|.|. ...++|+|.|..+.+||+...-. ....+..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 765 4566544 4457999999864 567889999999999999996 56899999999999999974221 1111111
Q ss_pred EeccccccccceEEEEECC-CCCEEEEeeCC
Q 019006 268 LEGHQHNFEKNLLKCGWSP-DGSKVTAGSSD 297 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~-~g~~l~sgs~d 297 (347)
+. ....|..+.|++ ...+++.+...
T Consensus 332 y~-----a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT-----AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh-----ccceeeeeeecccCCCEEEEEecC
Confidence 11 134688899985 46778777654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=144.17 Aligned_cols=208 Identities=18% Similarity=0.311 Sum_probs=162.7
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
...|+.++.||.+.+.+-.+. ......+|.+++.+-.|+|||.-|++++.||.|++|. .+|.....+......|.++
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccch--hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 357888999999998876443 3346789999999999999999999999999999998 5565555566667788888
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCC-CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
.+.|+....+++.+ +.+.+--+. +.+.++--.|++-|.++.|++..+.+++|+.|-+.++||. .|...+.-..|..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY 228 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc
Confidence 88888777666543 455555554 3344555567788999999999999999999999999996 4667777788999
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
+|++++|.|+ ..++.++.+ ++++=. ...+.+..++||+||..+++|...|.+.+=
T Consensus 229 ~ITSva~npd-~~~~v~S~n-t~R~~~-------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYN-TARFSS-------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc-cceeeeeee-eeeecC-------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999 555665543 444211 113578999999999999999999987653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=133.15 Aligned_cols=264 Identities=18% Similarity=0.288 Sum_probs=181.4
Q ss_pred CCCCccCCCCc--CeeEecCccccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCCee-eEEEeCcc-cceeEEEEcCC
Q 019006 38 NGKQRTSSLES--PIMLLTGHQSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDCKN-FMVLKGHK-NAILDLHWTTD 111 (347)
Q Consensus 38 ~~~~~~~~~~~--~~~~~~~h~~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~-~~~~~~h~-~~v~~~~~~~~ 111 (347)
++..+.+...+ .+..+.+|...++.++|.. ....+.+|+.||+|++||+....+. .....+|. .+..+++....
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 34444444333 4456789999999999987 4578899999999999998643322 23344555 45566666666
Q ss_pred CCEEEEec----CCCeEEEEECCCCce-eeee-eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeec
Q 019006 112 GSQIISAS----PDKTLRAWDVETGKQ-IKKM-AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTF 181 (347)
Q Consensus 112 ~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~ 181 (347)
++.+++|. .|-.+.+||++..+. +..+ ..|..-|+.++|+|.++++|++|+.||-+.+||++... ....+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 77777764 466799999988765 4433 45888999999999999999999999999999997543 34556
Q ss_pred CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceEEEecCC------------CCceeEEEECC-CCCEEEEEcC-
Q 019006 182 PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGH------------QDMITGMSLSP-DGSYLLTNGM- 246 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~v~~~~-~~~~l~t~~~- 246 (347)
.+...|.++.|...+ +.+++-+...+..+|++..+.....+... .+.+... .+| +...++.++.
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTD 287 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccc
Confidence 667789999998765 46888888999999999877654433211 1112111 223 3445555555
Q ss_pred CCcEEEEeCCC--CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 247 DCKLCIWDMRP--YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 247 d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
-++..++-+.. ..........+.++. ...|.++.|...+.++.+|+.||.+.+|..
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~---~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGGH---EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCceeEEEeeecccccccCccccccCCc---HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 45666664432 111222333444432 345677778888999999999999999974
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=125.97 Aligned_cols=235 Identities=16% Similarity=0.234 Sum_probs=167.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEEEECCCCce
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRAWDVETGKQ 134 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~ 134 (347)
...+..+.|+.+...|..|+.||. ++|+.....+ +.........|.-+-|+. .++|..+.+ ..+++.+...+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 345666779999999999999985 4666542211 111222223456666764 466655544 4589999887776
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CCCceEEEEEcCCCCeEEEE--ecCCcE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASDKIYTG--GIDNDV 208 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~--~~dg~i 208 (347)
+..+.- ...+.++.... +.++.+-.+ .|.|||++..+.+.++. +...+.++++++.+.+++-- ...|.|
T Consensus 81 ICe~~f-pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIFF-PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEec-CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 665542 23444555443 345555444 49999999998887763 33457777777777788753 356899
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc-EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK-LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
.+||..+-+....+..|.+.+-+++|+++|.+|||++..|+ ||++.+.. +..+..++.-. ....+.+++|+||
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~----G~kl~eFRRG~--~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE----GQKLYEFRRGT--YPVSIYSLSFSPD 229 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC----ccEeeeeeCCc--eeeEEEEEEECCC
Confidence 99999999999999999999999999999999999999985 68998854 23334443221 2467899999999
Q ss_pred CCEEEEeeCCCeEEEEeCC
Q 019006 288 GSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~ 306 (347)
+++|++.|..++|++|.++
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-17 Score=138.50 Aligned_cols=263 Identities=13% Similarity=0.192 Sum_probs=182.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccce-eEEEEc-------CCCCEEEEecCCCeEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAI-LDLHWT-------TDGSQIISASPDKTLRA 126 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v-~~~~~~-------~~~~~l~s~~~dg~i~i 126 (347)
-|...|.++.|+.....+.+++.+-.+.-|++..+...... -..+-| +.+..- ...+.++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~--~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAK--LPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhh--CCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 46666779999988888877766655555555432211111 111111 111111 12357888999999988
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.+ ..++..+.+..|.+.+.+-.+++++. -+++.+.||.|++|.-...-.-........|.|++|.|+.+.++-+.. +
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 76 45666667778888888778888765 467889999999997542211112245568999999999876654433 4
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.+.+=-+.....+...++|.+.|.++.|++..+.+++||.|-..++||-.. ..+..... .+-++.+++|+|
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~----~ey~ITSva~np 237 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAA----EEYAITSVAFNP 237 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCCh----hccceeeeeecc
Confidence 577767777777788899999999999999999999999999999999642 22211122 235799999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+ ..++.||.. ++++ -....++|..++|++||..++.+...|.+.+
T Consensus 238 d-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 238 E-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9 666667653 3441 1123578999999999999999999988765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-17 Score=133.90 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=181.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC------ceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG------KQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
-+.+|.+.|.++.|+.+++.|++|+.|..+++|+++.. +.+.... .|...+.++.+... ...+++|..++++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence 35689999999999999999999999999999998632 3333332 24467777777654 4578999999999
Q ss_pred EEEeCCCCCceeecCCC---CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce---EEEecCCCCceeEEEECCCC-CE
Q 019006 168 KLWDMRQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMITGMSLSPDG-SY 240 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~v~~~~~~-~~ 240 (347)
..-|+.+.+.+..+.+. ..|+.+..+|..+.|++.+.++.|.+||.+.... ...+........++.|+|.. .+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999888877654 4899999999999999999999999999986541 22222334556788999965 46
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-eEEecCC--
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI-LYKLPGH-- 317 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h-- 317 (347)
|++.+..+.+.+||.+......-......+... -........|+|.|..|++--....=.+||..+.++ +.+....
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 677888889999999853211000000111110 012235677999999988876666677888877443 3444322
Q ss_pred ----ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 318 ----TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 318 ----~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...+.+++|..+.. ++|+|.|-.|+||+|
T Consensus 289 GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred cceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 23567888877765 889999999999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=141.52 Aligned_cols=196 Identities=21% Similarity=0.276 Sum_probs=134.7
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeee-----ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIKKMA-----EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK 184 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~ 184 (347)
+.+--++.+-.-|.+.+.|....+ +..+. .....+.++.+.+.+..+++.+..+|.+.++|...- ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~ 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CG 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------cc
Confidence 445556677777888888765522 22211 123556677777777778888899999999987211 11
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
..-.+....+++..+......+. .+...+..+.--++.|+.++|+|||++||+.+.||.++|||....+
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----- 323 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----- 323 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----
Confidence 11111222334444443222111 1112233333334579999999999999999999999999987432
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+.+....+-....+++|||||+||++|+.|--|.||.+..++++.+-.||...|..|+|.
T Consensus 324 ---Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 ---LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ---HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 122223345678999999999999999999999999999999999999999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=148.47 Aligned_cols=250 Identities=16% Similarity=0.306 Sum_probs=173.3
Q ss_pred cccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCC----eeeE---EEeCc----ccceeEEEEcCCCCEEEEecCCCe
Q 019006 57 QSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDC----KNFM---VLKGH----KNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 57 ~~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~----~~~~---~~~~h----~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
...|+.|.+-. |..+|.+|+.||.|+||+-.... +... .+.++ .+.=.-++|.....+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 35677787743 45789999999999999865332 1111 11111 111134678887778888877899
Q ss_pred EEEEECCCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeec-CCCC--ceEEEEEcCCC
Q 019006 124 LRAWDVETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTF-PDKY--QITAVSFSDAS 196 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~-~~~~--~v~~~~~~~~~ 196 (347)
|+|||......+..+... ...+..+........++++|-.||.+++||.+.... +... ++.. .|..+.+.+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 999999887776666443 334555555555567999999999999999875432 2222 2333 38888888865
Q ss_pred C-eEEEEecCCcEEEEeCCCCceE--EEecCCC--C-ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEec
Q 019006 197 D-KIYTGGIDNDVKVWDLRKGEVS--MTLQGHQ--D-MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 197 ~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~--~-~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
- .+++|+.+|.|++||+|..... .++..|. + .++++..+++...+|+|+. +.|+||++... +...++...+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPG 1345 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCcc
Confidence 4 5999999999999999974221 2222332 2 4899999999999999998 89999998632 1112222222
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
....-...+.+++|+|..-+||+|+.|.+|.||.....+
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 222223567899999999999999999999999876543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=141.89 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=174.3
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
....+.||.+.|++++|+.+|..+|+|+.|..|.+|+..-+.. .--.|.+.|.+|.|+|-...|++|+... .-+|.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS 120 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWS 120 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---eeeccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence 4567899999999999999999999999999999998642211 1236999999999999999999987643 45776
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEEEEcCCC-----CeEE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFSDAS-----DKIY 200 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-----~~l~ 200 (347)
.+... +.+. .....+.+|++..+ +.+++.|-.+|+|.+-+......+..-. ....|.+++|+|.. ..++
T Consensus 121 ~~qK~-V~K~-kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 121 PEQKS-VSKH-KSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhh-HHhh-hhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 54322 1111 12234556666555 4688899999999998765443333222 34679999999874 3567
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+.....++.+|.+. |+.+..-..-.-...|+.+.++|.+++.||.|+.+.+|-... ..+.+ ...++..|+
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGT----vg~~D~WIW 267 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGT----VGEQDSWIW 267 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEee----ccccceeEE
Confidence 77788888888764 433332222222346889999999999999999999996431 11122 223567899
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.++..|++++++.|..||+|--|++.
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999999999999863
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=135.60 Aligned_cols=235 Identities=16% Similarity=0.193 Sum_probs=158.6
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec---CCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS---PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.+||.++.. ...+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.. .+...........+++++..
T Consensus 180 ~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCC--CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCE
Confidence 57788776532 233445667889999999999988654 3457999999887532 22222233334677888876
Q ss_pred EEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-N--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++ .|.+||+.++...+.......+....|+|+++.++..+.+ + .|+++|+.+++.. .+..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 766656555 4888999877665544445567889999999988766654 4 4555677666432 33333344567
Q ss_pred EEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe---EEEEeC
Q 019006 232 MSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM---VYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~---i~vwd~ 305 (347)
..|+|+|++++..+.+ ..|.+||+.... ...+.... ......|+|||++|+.++.++. ++++++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----VQVLTDTF-----LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEeCCCC-----CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 8999999998876543 358888886432 12222111 1224679999999999887764 777777
Q ss_pred CCceeeEEecCCccCeeeEEEcCC
Q 019006 306 TSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
++....++.+|.+.+...+|+|-
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCCC
Confidence 45566788899999999999984
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=152.73 Aligned_cols=234 Identities=22% Similarity=0.382 Sum_probs=185.1
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
.+.+|..+|.|..|...|.++++|+.|..++||..+++.++....+|...+...+.+..+ .++++++.|..|++|-+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCC
Confidence 467899999999999999999999999999999999999999999999999887776543 5788999999999999999
Q ss_pred CCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE---ec-CCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 175 RGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT---LQ-GHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 175 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
+.++..+. |.+.|++++|+|- .+.+.||++++||.+-.-.... +. ...+.+.++-|..++..++|++.|+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 98887764 5678999999994 3788999999999872111111 11 11345677888888999999999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
-..|.+....... ..+.-+.++.| ..+.+++-.+-.+.+|++.++.++..+.+|...+.-+.+||
T Consensus 340 a~n~e~~~l~~~~--------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRS--------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cccchhhHhhhhc--------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 8888764211000 00111111112 25666777888999999999999999999999999999999
Q ss_pred CCCEEE-EecCCCcEEeecC
Q 019006 329 TEPVIG-SCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~-s~s~D~~i~i~~~ 347 (347)
-++.++ +++.||...|||+
T Consensus 406 fn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCcHhhhhccCCCceEeeec
Confidence 998655 9999999999996
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=125.02 Aligned_cols=200 Identities=22% Similarity=0.372 Sum_probs=153.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEE-----EeCcccceeEEEEcC--CCCEEEEecCCCeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV-----LKGHKNAILDLHWTT--DGSQIISASPDKTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~-----~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 127 (347)
.|-+.|.|+.|.|++..||+-. |..|.+|++....+.... -.+|....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4566899999999999998876 889999999643321111 123566778889998 67777765 68999999
Q ss_pred ECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecC-CCCceEEEEEcCCC-CeEEEEe
Q 019006 128 DVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFP-DKYQITAVSFSDAS-DKIYTGG 203 (347)
Q Consensus 128 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~ 203 (347)
|+++.++...+. .|...+.++.++|+...++++|+.||.|++||.|.- .+++.++ |...+.++.|+|.. +.+++|+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 999876655553 467778889999998899999999999999999853 4566654 45689999999874 4677999
Q ss_pred cCCcEEEEeCCCCc-----------------------------eEEEecCCCCceeEEEECCCCCE-EEEEcCCCcEEEE
Q 019006 204 IDNDVKVWDLRKGE-----------------------------VSMTLQGHQDMITGMSLSPDGSY-LLTNGMDCKLCIW 253 (347)
Q Consensus 204 ~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~i~~v~~~~~~~~-l~t~~~d~~i~~w 253 (347)
.|..|.+|...+-. .+.++..|.+.|.+++|+.-..+ +|+-+.||.+.|=
T Consensus 279 SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 279 SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 99999999753210 12345678899999999986665 5677999999887
Q ss_pred eCC
Q 019006 254 DMR 256 (347)
Q Consensus 254 d~~ 256 (347)
.+.
T Consensus 359 ~V~ 361 (370)
T KOG1007|consen 359 SVP 361 (370)
T ss_pred cCC
Confidence 654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-15 Score=114.25 Aligned_cols=236 Identities=16% Similarity=0.290 Sum_probs=159.8
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-----eeE--EEeCcc-----cceeEEEEcCCCCEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-----NFM--VLKGHK-----NAILDLHWTTDGSQII 116 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-----~~~--~~~~h~-----~~v~~~~~~~~~~~l~ 116 (347)
++...++|.++|+.|+|. ..+|++|+. |.|+-|......+ ... ....|. ..|.+|...|..+-++
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 455668999999999997 566777665 9999987643211 111 112233 3578898999888888
Q ss_pred EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC---C--------C
Q 019006 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD---K--------Y 185 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~--------~ 185 (347)
.++.|+.++-||+++|+..+.+.+|..++.++..-... ..+++|+.||++|+||.++++.++.+.. + .
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 88899999999999999999999999999987763333 3578999999999999999988776531 1 1
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.|.+++. +...+++|+. ..+.+|.+++.++...+.- ...+..+.|- ...++++|..+.+.-|.+.. ...
T Consensus 210 wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G-----vl~ 278 (325)
T KOG0649|consen 210 WIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG-----VLQ 278 (325)
T ss_pred eeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeecc-----EEE
Confidence 2455554 4467776654 4699999998876555432 2346667774 45678888778888887642 111
Q ss_pred EEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEE
Q 019006 266 KILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIW 303 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vw 303 (347)
...+.. .-.+.+..|+.. -++|..++..+.+.++
T Consensus 279 a~ip~~----s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 279 ANIPVE----STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EeccCC----ccceeeecccCCceEEEEecccceeeeee
Confidence 111111 112444444433 2445556666667666
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=134.44 Aligned_cols=274 Identities=14% Similarity=0.198 Sum_probs=182.1
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC---CEEEEecCCCeEEEEECCCCceeeee
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG---SQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.-.|++|++.++.... ..|.+|.... ......+.+|..+++.+.+.|.. .++++++.||.|++||...+.+++.+
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~T-g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTAT-GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecch-HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3468899988876554 5789998753 23344789999999999998754 46789999999999999999888877
Q ss_pred eccCcceeEe---ecCCCCCCEEEEEcCCCce------------EEEeCCCCCc--eeecCCCCceEEEEEcCCCCeEEE
Q 019006 139 AEHNSFVNSC---CPSRRGPPLVVSGSDDGTA------------KLWDMRQRGA--IQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 139 ~~~~~~v~~~---~~~~~~~~~~~s~~~d~~i------------~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
..+....... ++.... ..+.....|..+ +-+.+.+... .........-.++.+.+.+.+...
T Consensus 99 ~~~~~v~~~~~~~~~a~~s-~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADIS-ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred ecCCceeEEEechhHhCcc-ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 6543322111 111111 111112222111 1111111000 000000111356677776666555
Q ss_pred EecCCcEEEEeCCCCceEE----EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 202 GGIDNDVKVWDLRKGEVSM----TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.... .+.+|+........ .-..|.-.+++.++||++++++++..||.|.+|.--..+........+..| ..
T Consensus 178 ~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH----~~ 252 (792)
T KOG1963|consen 178 VHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH----HD 252 (792)
T ss_pred EEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec----cc
Confidence 5544 57888876643111 112466668999999999999999999999999532211111122334444 35
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+.+++|+++|.+|++|+..|.+.+|.+.+++ .+.++.-...|..+.++|++.+.+..-+|.+|.+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 79999999999999999999999999999988 5567777889999999999999999999998875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=137.91 Aligned_cols=231 Identities=19% Similarity=0.291 Sum_probs=161.3
Q ss_pred CCCEEE--EecCCCeEEEEECCCCceeee----eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----
Q 019006 111 DGSQII--SASPDKTLRAWDVETGKQIKK----MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ----- 179 (347)
Q Consensus 111 ~~~~l~--s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----- 179 (347)
+..+++ .++..|.|-||+++..-.+-. -......|.++.+.+.+...++.++.||.|++|.+..+..-.
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 334444 346679999999875322211 112345678888888888889999999999999987554321
Q ss_pred --ec-CCCCceEEEEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 180 --TF-PDKYQITAVSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 180 --~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
.+ .+..+|+++.|+|- ...|++++.|-+|++||+++.+....+.+|++.|.+++|+|+|+.+++.+.||+|++|+-
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 12 24457999999986 457889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC----CeEEEEeCCCce--eeEEec-CCccCeeeEEEcC
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD----RMVYIWDTTSRR--ILYKLP-GHTGSVNESVFHA 328 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d----g~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~~ 328 (347)
+..+. .+..-++ .....-.++.|-=||+++++.+.| ++|.+||..+-. .++..- .-...+.--.+.+
T Consensus 750 rs~e~---pv~Eg~g---pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 750 RSREQ---PVYEGKG---PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred CCCCC---ccccCCC---CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccC
Confidence 75322 1111111 111234456677899999887655 578899876533 333221 0011111112344
Q ss_pred CC-CEEEEecCCCcEEeecC
Q 019006 329 TE-PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~-~~l~s~s~D~~i~i~~~ 347 (347)
|. -++.|+-.|..|+++++
T Consensus 824 Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred CCceEEEecCCCceEEEEEe
Confidence 43 36778888999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=137.35 Aligned_cols=222 Identities=17% Similarity=0.251 Sum_probs=149.1
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~ 125 (347)
..+..|...+...+|+|+|+.|+..+.+ ..|++|++.+.. ..+..+.+| ....+|+|||++|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456788889999999999999887654 369999986432 222223333 34689999999888764 678766
Q ss_pred EE--ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 126 AW--DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 126 iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
|| |+.+++ ...+..+...+....+++++..++++...++...+|++... .....+.... ....|+|+++.++..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEE
Confidence 65 655554 34455555556667788887766666667888888876432 2222222222 457899999999887
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.++ +.+||+.+++.......+ ....+.|+|+|++++.++.++...+|++... .+.....+..+. ..+...
T Consensus 351 ~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~--~G~~~~~l~~~~----g~~~~p 421 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA--DGRFKARLPGSD----GQVKFP 421 (429)
T ss_pred cCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC--CCCceEEccCCC----CCCCCc
Confidence 7754 666999888654332222 2456889999999999999998888876421 233445554432 345667
Q ss_pred EECCC
Q 019006 283 GWSPD 287 (347)
Q Consensus 283 ~~s~~ 287 (347)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 78874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=136.44 Aligned_cols=265 Identities=17% Similarity=0.261 Sum_probs=194.0
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
+-..+.+.++.+|.+|+.|+.-|.|-.+|+... .....+. -...|.++.|..+..++|.+ ....++||| ..|..+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEe
Confidence 445678899999999999999999999988532 2222222 23468889998887766655 667899999 4577777
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
.+..+.. +..+.|.|- ..+|++++..|.++.-|+..++.+..+.. ...+..+.-+|-...+-+|...|+|.+|...+
T Consensus 205 Clk~~~~-v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRHIR-VARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhcCc-hhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 7766543 334444443 36889999999999999999998877754 45677888888888888999999999999988
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.+....+..|.++|.++++.++|+|++|.|.|..++|||+|.+.... .+.. .-....+++|..| +||.|
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~----t~~t-----p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH----TYRT-----PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc----eeec-----CCCcccccccccc-ceeee-
Confidence 88888999999999999999999999999999999999999754211 1111 1234455666655 34444
Q ss_pred CCCeEEEEe-CCC--ceeeEEecCC--ccCeeeEEEcCCCCEEEEecC
Q 019006 296 SDRMVYIWD-TTS--RRILYKLPGH--TGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 296 ~dg~i~vwd-~~~--~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~ 338 (347)
....|.+|. ... +.....+..| .+.|.++.|-|-+..|..+-.
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 334799993 322 1222233344 358999999998877765443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-14 Score=116.67 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=157.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee--eeccCcceeEeecCCCCCCEEEEEcCC------CceEEEeCC
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMR 173 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~ 173 (347)
...+++|+.|...++.|-.+| .+||+.+-.++... +...+-.+....+ ..+.+.+.|+.+ ..+.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345589999988888776666 79998875333111 1111111111111 112233444433 579999977
Q ss_pred CCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEEEecCC--CCceeEEEECCCCCEEEEEc-CCCc
Q 019006 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSMTLQGH--QDMITGMSLSPDGSYLLTNG-MDCK 249 (347)
Q Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~v~~~~~~~~l~t~~-~d~~ 249 (347)
...++.++.-..+|.++.+.++ .+++. .++.|++|... +.+....+... ...+.+++-+.+..+|+.-| .-|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 7788888888889999999864 34433 45689999876 33444443322 22233333222334444433 4589
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEecCC--ccCeeeEEE
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLPGH--TGSVNESVF 326 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~~h--~~~v~~~~~ 326 (347)
|.|-|+...... ....+..|. ..|.+++.+.+|.+|||+|..|+ |||||..+|.++++++.- ...|.+++|
T Consensus 161 vQi~dL~~~~~~--~p~~I~AH~----s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 161 VQIVDLASTKPN--APSIINAHD----SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEEEEhhhcCcC--CceEEEccc----CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 999998753321 235566664 57889999999999999999998 899999999999988633 457999999
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+..+||.+|..|+++||.+
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEe
Confidence 999999999999999999864
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=131.78 Aligned_cols=235 Identities=18% Similarity=0.197 Sum_probs=156.4
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (347)
..|.+||..+. ....+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++.. .+...........+++++.
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC
Confidence 35888887543 233455677789999999999999987643 46999999877643 2222233334567778877
Q ss_pred CEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CCc--EEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DND--VKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.++++.+.++ .|.+||+.++.......+........|+|+++.++..+. +|. |+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 6766666666 588899987765443333334567899999998886664 444 7777877665432 222223445
Q ss_pred EEEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEe
Q 019006 231 GMSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWD 304 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd 304 (347)
.++|+|+|++++..+.++ .|.+||+..... ..+.... ......|+|||++|+..+.+ +.|++++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~~~-----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTPGS-----LDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----EECCCCC-----CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 689999999988765432 689999864321 1222111 12345799999998877653 4688888
Q ss_pred CCCceeeEEecCCccCeeeEEEcC
Q 019006 305 TTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 305 ~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
+.. ....++..+.+.+...+|+|
T Consensus 410 ~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCC-CceEEcccCCCCCCCCccCC
Confidence 854 45667777777888888987
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-14 Score=127.00 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=151.2
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.++|..+. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +...........+++++..
T Consensus 177 ~L~~~D~dG~--~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQ--NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCC--CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4666666432 233455677788999999999999877643 469999998876532 3223334445677888777
Q ss_pred EEEEEcCCCceEEEe--CCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CCcEEEE--eCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDGTAKLWD--MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DNDVKVW--DLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++...+|. +..+.......+........|+|+++.++..+. +|...+| ++..++... +..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~ 332 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTS 332 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCc
Confidence 777778888877765 444433222223334566789999998876554 4555555 544444322 2112233456
Q ss_pred EEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~ 305 (347)
..|+|+|++++..+.++ .|.+||+.... . +.+.... ......|+|||++|+..+.++ .+++.+.
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----~-~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQ----V-TALTDTT-----RDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCC----e-EEccCCC-----CccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 78999999998766554 69999986432 1 1222111 123567999999998877543 4666676
Q ss_pred CCceeeEEecCCccCeeeEEEcCC
Q 019006 306 TSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
++....++..+.+.+...+|+|-
T Consensus 403 -~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEeecCCCCCCCCccCCC
Confidence 46666777778888899999885
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=121.07 Aligned_cols=263 Identities=17% Similarity=0.260 Sum_probs=180.1
Q ss_pred ccccEEEEEECCCC--CeEEEeeCCCcEEEEeccCCC-ee----eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 56 HQSAVYTMKFNPAG--TVIASGSHDRDIFLWHVHGDC-KN----FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 56 h~~~V~~v~~~~~~--~~l~s~~~d~~v~~w~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
-...|..+.|.-++ ..|...+.|..+..+...... .. .......+.+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 34567777777554 456555566666655543211 00 11233445566666554 34788899999999999
Q ss_pred CCCCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCceeecCC----------CCceEEEEE
Q 019006 129 VETGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAIQTFPD----------KYQITAVSF 192 (347)
Q Consensus 129 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~----------~~~v~~~~~ 192 (347)
...+. .+..+..+ ..+..+...+..+.++++|+.. ..+++||+.+.+.+..-.. ...++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 22233333 2233344455666788889998 8899999987755543321 123677888
Q ss_pred cCC--CCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 193 SDA--SDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 193 ~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
-+. ...|++++.-+.+++||.+.++ ++.++.--..+|+++...|.+++++++..-+.+..||++... ....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k----l~g~-- 284 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK----LLGC-- 284 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce----eecc--
Confidence 877 7899999999999999998764 555666567789999999999999999999999999998532 1111
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
......+.+.++..+|.+++||+++-|++|||+|..+.+++.+.- -...++.+.+.++
T Consensus 285 -~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 285 -GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred -ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 122345678889999999999999999999999999977765321 1223455555443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=134.82 Aligned_cols=248 Identities=16% Similarity=0.213 Sum_probs=160.4
Q ss_pred eeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcC
Q 019006 92 NFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 163 (347)
....+..|+..|..++.+++. .+++|||.||+|++|+...- +...++......+..+.....+ ..++.++.
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~ 1118 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTK 1118 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcC
Confidence 344567788888888887655 89999999999999997532 1112222223334333333333 45777899
Q ss_pred CCceEEEeCCCCCc-----ee-ec---CCCCceEE-EEEcCC-C-CeEEEEecCCcEEEEeCCCCceEEEec--CCCCce
Q 019006 164 DGTAKLWDMRQRGA-----IQ-TF---PDKYQITA-VSFSDA-S-DKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMI 229 (347)
Q Consensus 164 d~~i~iwd~~~~~~-----~~-~~---~~~~~v~~-~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i 229 (347)
||.|++.++..-.. .+ .. .....+.. -++... . ..++.+...+.|..||.++.....+++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998865211 11 11 11222322 233322 2 367778888999999999876554443 234789
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE---CCCCCEEEEee--CCCeEEEEe
Q 019006 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW---SPDGSKVTAGS--SDRMVYIWD 304 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~g~~l~sgs--~dg~i~vwd 304 (347)
++++.+|.++++++|...|.+.+||+|-..+ +... .+.....+..+.. .|.....++++ ..+.|.+|+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~----i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP----ILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCce----eecc---cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 9999999999999999999999999984322 2111 1122234444444 44445665554 478899999
Q ss_pred CCCceeeEEecCC-------------------ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 305 TTSRRILYKLPGH-------------------TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 305 ~~~~~~~~~~~~h-------------------~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+|.+-+.+-.. .-+.....+...+..+.+++.|..|+.||.
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 9988665544322 122334455556779999999999999984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-13 Score=123.90 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=155.9
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC---CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP---DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.++|..+. ....+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+......+....+++++..
T Consensus 183 ~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 5777776543 33456677888999999999999887753 468999999887643 33334445556677888777
Q ss_pred EEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++. |.+||+.++.......+........|+|+++.++..+. +| .|+++|+..++.. .+..+...+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence 7777776665 66678877655443333444567899999998886663 33 5888898766543 33323445667
Q ss_pred EEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC------CeEEE
Q 019006 232 MSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD------RMVYI 302 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d------g~i~v 302 (347)
..|+|+|++|+..+.+ ..|.+||+.... ...+... ..+....|+|||++|+..+.+ ..+++
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-----ERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCc-----eEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 8999999999876543 357778864211 1222111 124456799999998775542 36888
Q ss_pred EeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 303 WDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 303 wd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
+|+..+.. ..+. ..+.+...+|+|-
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCCC
Confidence 89876554 4554 3556777888874
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=117.73 Aligned_cols=282 Identities=19% Similarity=0.360 Sum_probs=180.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe----eeEEEeCcc------------cceeEEEEcCCC--CEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK----NFMVLKGHK------------NAILDLHWTTDG--SQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~ 118 (347)
..-+.+|.|...|.+||+|..+|.|.++.-..... ....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35688999999999999999999999986542221 122333443 457889998865 467778
Q ss_pred cCCCeEEEEECCCCceee--------------------ee----------------eccCcceeEeecCCCCCCEEEEEc
Q 019006 119 SPDKTLRAWDVETGKQIK--------------------KM----------------AEHNSFVNSCCPSRRGPPLVVSGS 162 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~--------------------~~----------------~~~~~~v~~~~~~~~~~~~~~s~~ 162 (347)
..|++|++|-+....... .+ ..|.-.++++....+.. .+++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEee-c
Confidence 899999999875321100 00 01334455555555543 4444 5
Q ss_pred CCCceEEEeCCCC-Cc--eeec-CCC-----CceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCce------EEEec---
Q 019006 163 DDGTAKLWDMRQR-GA--IQTF-PDK-----YQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEV------SMTLQ--- 223 (347)
Q Consensus 163 ~d~~i~iwd~~~~-~~--~~~~-~~~-----~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~~--- 223 (347)
.|-+|.+|++.-- +. +..+ |+. .-|++..|+|... .++-.+..|+|++.|+|.... .....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7789999998632 21 1112 222 2478889998754 556678899999999985321 11111
Q ss_pred -------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-------c----cceEEEEEC
Q 019006 224 -------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-------E----KNLLKCGWS 285 (347)
Q Consensus 224 -------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~s 285 (347)
+--..|..+.|+++|+|+++-.. -+|++||+.. ..+.+..++.|.... + -.-..|+|+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm---e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM---EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc---cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 11235788999999999998664 3899999853 223344444443211 0 123578899
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceee-------------------EEec--CC-------------ccCeeeEEEcCCCC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRIL-------------------YKLP--GH-------------TGSVNESVFHATEP 331 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~-------------------~~~~--~h-------------~~~v~~~~~~~~~~ 331 (347)
-++.++++||..+..++|+...|... .... |. ...+...+|||.+.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en 418 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN 418 (433)
T ss_pred CCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccc
Confidence 99999999999999999995433210 0000 11 12467788999999
Q ss_pred EEEEecCCCcEEee
Q 019006 332 VIGSCSSDKQIYLG 345 (347)
Q Consensus 332 ~l~s~s~D~~i~i~ 345 (347)
.+|.+..+. ++|+
T Consensus 419 ~ia~aatnn-lyif 431 (433)
T KOG1354|consen 419 SIAVAATNN-LYIF 431 (433)
T ss_pred eeeeeecCc-eEEe
Confidence 998887763 4443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=116.39 Aligned_cols=279 Identities=16% Similarity=0.234 Sum_probs=185.2
Q ss_pred EEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeecc
Q 019006 63 MKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQIKKMAEH 141 (347)
Q Consensus 63 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 141 (347)
.+|+|+|+++|+.+.- .+.+=|... ..+..+-.--+.|.-+.|..|..+++++ ..|+.|.+|++...+--.++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 4799999999999886 444444321 0000001113567888999988887765 57789999999887777778778
Q ss_pred CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC----------------
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---------------- 205 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------- 205 (347)
...+...+++|++..++.+..-+-+|.+|.+.+.+....--.+..+..++|++++++.+..+..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 8888889999999999999999999999999876654333334456778888888876655432
Q ss_pred --------------------CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc----
Q 019006 206 --------------------NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ---- 261 (347)
Q Consensus 206 --------------------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---- 261 (347)
+.+.+||.--.-.+..+. -.-.+..++|+|-+++|+.|+.|+.+++-+--+.++.
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc
Confidence 123334321111111111 1134778999999999999999998887532110000
Q ss_pred ------------------------Cce----------------------------eEEEec--cccccccceEEEEECCC
Q 019006 262 ------------------------NRC----------------------------VKILEG--HQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 262 ------------------------~~~----------------------------~~~~~~--~~~~~~~~~~~~~~s~~ 287 (347)
..+ +..++. ...+....+-.++|++|
T Consensus 250 hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 250 HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 000 000000 00011123456789999
Q ss_pred CCEEEEeeCC--CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 288 GSKVTAGSSD--RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++++-.+. +.+.+||++..++-..+ -...+|....|+|..+.|+-+.....+|+|.
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 9999986653 67999999887654333 2345799999999999888888777888884
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-13 Score=108.95 Aligned_cols=233 Identities=12% Similarity=0.176 Sum_probs=151.5
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc--ceeEEEEcCCCCEEEEec-CC------CeEEEEECC
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN--AILDLHWTTDGSQIISAS-PD------KTLRAWDVE 130 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~-~d------g~i~iwd~~ 130 (347)
...++|+.|..-+++|..+| .++|+++. .++......+.. .+.-|-|- .++|+..+ .+ ..+.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P-~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDP-FKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCc-hhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 34489999999888887766 68888742 111111111111 12222222 34554333 22 369999955
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC-CCCceeec---CCCCceEEEEEcCCCCeEEE-EecC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQTF---PDKYQITAVSFSDASDKIYT-GGID 205 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~~~~---~~~~~v~~~~~~~~~~~l~~-~~~d 205 (347)
..+++.++. -...|..+...++ .++.. .+++|.+|... .-+.+..+ .......+++-+.....|+. |-.-
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 556655554 2345666665543 34433 45789999876 33333333 33334555544444445554 4466
Q ss_pred CcEEEEeCCCCce--EEEecCCCCceeEEEECCCCCEEEEEcCCCc-EEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEV--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCK-LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|.|.|-|+...+. ...+.+|.+.|.+++++.+|..+||++..|+ |+|||..+. ..+..++.- .....+.++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g----~~l~E~RRG--~d~A~iy~i 232 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG----TLLQELRRG--VDRADIYCI 232 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC----cEeeeeecC--CchheEEEE
Confidence 9999999987655 4778899999999999999999999999996 789998753 334444322 124579999
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+|||+..+||++|+.|+|++|.++.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999997754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-14 Score=117.86 Aligned_cols=238 Identities=20% Similarity=0.290 Sum_probs=170.9
Q ss_pred ccceeEEEEcCCC--CEEEEecCCCeEEEEECCCCceeeee------eccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 100 KNAILDLHWTTDG--SQIISASPDKTLRAWDVETGKQIKKM------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 100 ~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
...|.+++|..++ +.++.++.|..+..+.+......... ......+..... ....+++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCCEEEEEecCCcEEEEe
Confidence 3467777776544 34555556777777666554433322 112222322222 123678899999999998
Q ss_pred CCCCC----ceeecCCCCceEEEEEcCCCCeE-EEEecC--CcEEEEeCCCCceEEEecCCC---------CceeEEEEC
Q 019006 172 MRQRG----AIQTFPDKYQITAVSFSDASDKI-YTGGID--NDVKVWDLRKGEVSMTLQGHQ---------DMITGMSLS 235 (347)
Q Consensus 172 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~ 235 (347)
.+.+. ....+.....+..+.-++..+.+ ++|+.. +.+++||+...+.+.+-+.-. -.++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87432 22223334456666666665554 558988 889999998876555433211 235778888
Q ss_pred CC--CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 236 PD--GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 236 ~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
+. ...++++..-+.+++||.+.+ .+++..+.-. +..+.++...|+|++|++|..-|.+..||.+.+.++..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~----E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQ---RRPVAQFDFL----ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred CCCCCceEEEEecceeEEEecCccc---CcceeEeccc----cCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 87 789999999999999999853 4455554432 35688899999999999999999999999999998876
Q ss_pred -ecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 314 -LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 314 -~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+-.++|.++..||..+++|+||.|.-|+|+|+
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 8899999999999999999999999999999985
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=120.05 Aligned_cols=272 Identities=19% Similarity=0.317 Sum_probs=187.4
Q ss_pred CccccEEEEEECCCCCe-EEEeeCCCcEEEEeccCCCeeeEEEeCccc-ceeEE-EEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTV-IASGSHDRDIFLWHVHGDCKNFMVLKGHKN-AILDL-HWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
+|....+.|..+|||++ ||||-.--.|++|++..- -..+..|.+ .+..+ -.+.|-..++--..|.+|.+..-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 57788899999999986 577778889999998532 123344433 33333 344444455555667777654321
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
|..-. + --+.+..+++.+...-.+++.|+ ...|.-+++.++..+..+... ..++++..++....+++|+.+|.|..
T Consensus 125 G~hy~-~-RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 125 GRHYR-T-RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred Ceeee-e-ecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 21100 0 01122233444444444555444 346777899999888887665 67999999999999999999999999
Q ss_pred EeCCCCceEEEec------CCCC-----ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 211 WDLRKGEVSMTLQ------GHQD-----MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 211 wd~~~~~~~~~~~------~~~~-----~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
||.|....+..+. .|.. .|+++.|+.+|-.+++|..+|.+.|||+|...+. ....| ...-++
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh--~~e~pi 274 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKDH--GYELPI 274 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eeccc--CCccce
Confidence 9998765544432 2222 4899999999999999999999999999964432 22233 345678
Q ss_pred EEEEECCC--CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 280 LKCGWSPD--GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 280 ~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
..+.|.+. +..|++. ....++|||-.+|+....+.. ...++++++-|+..++.++-.++.+
T Consensus 275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred eeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcc
Confidence 88889765 3445444 445799999999998877654 3459999999999999998887654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-15 Score=115.60 Aligned_cols=241 Identities=17% Similarity=0.320 Sum_probs=150.7
Q ss_pred Eec-CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC-----CC----EEEEecCC
Q 019006 52 LLT-GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD-----GS----QIISASPD 121 (347)
Q Consensus 52 ~~~-~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~----~l~s~~~d 121 (347)
.++ .|...|+.+.--|+ ..|.+-+.|..+.+|++.... ...-|.-.+.++-|.+. ++ .++.-+..
T Consensus 50 ~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~----~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 50 LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA----FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc----eEEEeeeeccccccccceeccCCCcchhheecCCcc
Confidence 455 46677888888786 667789999999999986421 12223333344444321 11 11111100
Q ss_pred C-eEEEEECCCCceeeeee----ccCcceeEee--cCCCCCCEEEEEcCCCceEEEeCCCCCceeec-----------CC
Q 019006 122 K-TLRAWDVETGKQIKKMA----EHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-----------PD 183 (347)
Q Consensus 122 g-~i~iwd~~~~~~~~~~~----~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-----------~~ 183 (347)
. .+.+=|......+.... ...+.+.+.. .......++++|..+|.+.+||+.++..+-.+ .+
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 0 01111111111111000 0111222211 11122347888999999999999886433222 34
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC--ceE--EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG--EVS--MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~--~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
+.++.++.+.+....=++|+.+..+..|++.-. .+. .++.-.+-.|..+.+.||++.+||+|.|+.|++|..++..
T Consensus 205 ~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 567999999887777788899989999987533 211 1111112347889999999999999999999999998643
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
+ +..++.|. ..+.+++|+|+...+|++|.|+.|.+|++
T Consensus 285 p----LAVLkyHs----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 P----LAVLKYHS----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c----hhhhhhhh----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3 44555553 67999999999999999999999999985
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=111.39 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=167.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
..+|++.+|++|...++.+-.+..|.||.....+ ...++..|...+..+.+.+.. +.+++++.|..-.+|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC
Confidence 4689999999999999999999999999876654 567788899999988888775 468999999999999985433
Q ss_pred c----eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce----EEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 177 A----IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV----SMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 177 ~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
. +..+......+++.|+|.++.|++|+.-..|.||=++.... .+.-+.+.+.|++++|+|++-.|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 2 22334556789999999999999999999999986653321 112234567799999999999999999999
Q ss_pred cEEEEeCCC----CCCc----------CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-eeEE
Q 019006 249 KLCIWDMRP----YAPQ----------NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR-ILYK 313 (347)
Q Consensus 249 ~i~~wd~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~-~~~~ 313 (347)
..+++...- .++. +.....+. ...+.+..+.|+|+|..|+-.+.|..+.+-|..... .+..
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~----~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS----SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc----cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999996420 0000 00111110 113468899999999999999999999999987664 3333
Q ss_pred ecCCccCeeeEEEcCCC
Q 019006 314 LPGHTGSVNESVFHATE 330 (347)
Q Consensus 314 ~~~h~~~v~~~~~~~~~ 330 (347)
...-.-+..++.|..+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333556677775554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-11 Score=106.71 Aligned_cols=276 Identities=13% Similarity=0.238 Sum_probs=171.0
Q ss_pred EEEeeCC----CcEEEEeccCCCeeeEEEe--CcccceeEEEEcCCCCEEEEecC----CCeEEEEECCCC--c--eeee
Q 019006 72 IASGSHD----RDIFLWHVHGDCKNFMVLK--GHKNAILDLHWTTDGSQIISASP----DKTLRAWDVETG--K--QIKK 137 (347)
Q Consensus 72 l~s~~~d----~~v~~w~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~~ 137 (347)
+++|+.. +.|+.|+++.....+.... .-......++++|++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 6788888743333322211 12234567889999999998866 578999987654 2 2233
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----c-----------CCCCceEEEEEcCCCCeEEEE
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----F-----------PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~-----------~~~~~v~~~~~~~~~~~l~~~ 202 (347)
..........++..+++..++++-..+|.+.++++.....+.. + +......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323333345666777766777767899999999986432221 1 112357789999999988876
Q ss_pred ec-CCcEEEEeCCCCc--eE--EEecC-CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 203 GI-DNDVKVWDLRKGE--VS--MTLQG-HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 203 ~~-dg~i~iwd~~~~~--~~--~~~~~-~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
.. ...|++|++.... .. ..+.. .....+.+.|+|+++++++.. .++.|.++++....................
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 53 3479999987654 21 12221 223467899999999886654 567899999873222222233332221111
Q ss_pred c--cceEEEEECCCCCEEEEee-CCCeEEEEeCC--Cce--eeEEecCCccCeeeEEEcCCCCEEEEec-CCCcEEeecC
Q 019006 276 E--KNLLKCGWSPDGSKVTAGS-SDRMVYIWDTT--SRR--ILYKLPGHTGSVNESVFHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 276 ~--~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
. .....+.++|||++|.++. ..+.|.+|++. ++. .+..++........++++|++++|+.+. .++.|.++++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1 2567888999999988765 56789999983 233 3444544445589999999999888766 5678888763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=124.71 Aligned_cols=164 Identities=21% Similarity=0.359 Sum_probs=123.9
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee-eccCcceeEeecCCC-CCCEEEEEcCCCceEEEe
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM-AEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd 171 (347)
..+.||++-|.+++|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.++.|.|. +..++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 357899999999999999999999999999999999877776665 467888888877664 445789999999999999
Q ss_pred CCCCCc----------eeecC-CCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCceE-EE---------ecCCCCce
Q 019006 172 MRQRGA----------IQTFP-DKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEVS-MT---------LQGHQDMI 229 (347)
Q Consensus 172 ~~~~~~----------~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~---------~~~~~~~i 229 (347)
+...+. ...+. +...|..++..|.+ ..+.++++||+|+.||+|..... .. +...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 874211 11111 23457778888887 67889999999999999863211 11 11111235
Q ss_pred eEEEECCCC-CEEEEEcCCCcEEEEeCCC
Q 019006 230 TGMSLSPDG-SYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 230 ~~v~~~~~~-~~l~t~~~d~~i~~wd~~~ 257 (347)
.++.++|.. .+|++|+.|-..++||.|.
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 678899964 5788999999999999653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=109.02 Aligned_cols=147 Identities=12% Similarity=0.279 Sum_probs=101.9
Q ss_pred EEEEEcCCCCeEEEEec----------CCcEEEEeCCCC-ceEEEecC-CCCceeEEEECCCCCEEEEE--cCCCcEEEE
Q 019006 188 TAVSFSDASDKIYTGGI----------DNDVKVWDLRKG-EVSMTLQG-HQDMITGMSLSPDGSYLLTN--GMDCKLCIW 253 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~-~~~~~~~~-~~~~i~~v~~~~~~~~l~t~--~~d~~i~~w 253 (347)
..+.|++.|.+|+.-.. -+...+|.++.. .....+.- ..++|.+++|+|+|+.+++. ..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 34677888877664322 123445544321 22223322 23469999999999987654 456799999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC---CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS---DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
|++ ...+..+. ...+..+.|+|+|++|++|+. .|.|.+||..+.+.+.+.. |. .+..++|+|++
T Consensus 89 d~~-----~~~i~~~~------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVK-----GKKIFSFG------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred cCc-----ccEeEeec------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 985 22233332 134567899999999999874 4679999999988887764 33 47899999999
Q ss_pred CEEEEecC------CCcEEeecC
Q 019006 331 PVIGSCSS------DKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~------D~~i~i~~~ 347 (347)
+++++++. |..++||++
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CEEEEEEeccceeccccEEEEEe
Confidence 99998874 788888874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-11 Score=106.06 Aligned_cols=284 Identities=16% Similarity=0.150 Sum_probs=167.3
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
..+......-..+.|+|||+++.+++.||.|.++|+... +....++.- ....++++++||++++++. .++.+.++|.
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 344433333345779999999999999999999999643 344444432 3457899999999998775 6899999999
Q ss_pred CCCceeeeeeccC-------cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eecCCCCceEEEEEcCCCCeEE
Q 019006 130 ETGKQIKKMAEHN-------SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 130 ~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
++.+.++.+.... ..+..+..++..+.++++--..+.|.+.|....+.. ..+..........|+|++++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 9988887765432 233444445555445555555688888887654433 3333444567789999999877
Q ss_pred EE-ecCCcEEEEeCCCCceEEEec----CCCCceeEEEECCCC-CEEEEEc---------CCCcEEEEeCCCCCCcCcee
Q 019006 201 TG-GIDNDVKVWDLRKGEVSMTLQ----GHQDMITGMSLSPDG-SYLLTNG---------MDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 201 ~~-~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~v~~~~~~-~~l~t~~---------~d~~i~~wd~~~~~~~~~~~ 265 (347)
++ ..++.|-++|.++++....+. .|..++..+- +|.. ...++.+ ....+.+||.. ..+.+
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~----~wkvv 262 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY----AWKVV 262 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTT----BTSEE
T ss_pred ecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCCccccchhh----cCeEE
Confidence 64 567789999999887766543 2333333332 2322 1122221 12234455544 23455
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEe----eCCCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEec--C
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAG----SSDRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSCS--S 338 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sg----s~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s--~ 338 (347)
+.+.... .-.-+.-||++++|.+. ...+.|.++|..+.+.+.++.... ..+..+.|+++++.+-.+. .
T Consensus 263 ~~I~~~G-----~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 263 KTIPTQG-----GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEE-SS-----SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred EEEECCC-----CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 5555432 12445569999999988 455899999999998887775332 3589999999999554443 4
Q ss_pred CCcEEeec
Q 019006 339 DKQIYLGE 346 (347)
Q Consensus 339 D~~i~i~~ 346 (347)
++.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 44688876
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=118.73 Aligned_cols=253 Identities=20% Similarity=0.275 Sum_probs=181.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-ccCcceeEeecCCC-CCCEEEEEcCCCceEEEe
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd 171 (347)
..|..|.+.|..+.|+..|+.|++++.|..|.+||...+.....+. +|...+....|.|. +..-+++.+.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4578999999999999999999999999999999998877655543 45554544444443 234578889999999876
Q ss_pred CCCCC----ceeecCCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEE---ecCCCC---ceeEEEECCCCC-
Q 019006 172 MRQRG----AIQTFPDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMT---LQGHQD---MITGMSLSPDGS- 239 (347)
Q Consensus 172 ~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~---~i~~v~~~~~~~- 239 (347)
+...+ .....++...+..++..|+.. .|++++.|+.+.-+|++.+..... -..+.. ...+++..|.+.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54322 223346778899999888765 578999999999999987653322 223333 467889999765
Q ss_pred EEEEEcCCCcEEEEeCCCCCCc--CceeEEEecccc--ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--c-----
Q 019006 240 YLLTNGMDCKLCIWDMRPYAPQ--NRCVKILEGHQH--NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--R----- 308 (347)
Q Consensus 240 ~l~t~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--~----- 308 (347)
++++++.|..+++||.+..... ...+..+..+.. .....|.+++|+.++.-|.++-.|-.||+|.... +
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 8899999999999998864322 111222222211 2234688999998888888888888999996433 2
Q ss_pred -----eeeEE-ecCCccC--eeeEE-EcCCCCEEEEecCCCcEEeec
Q 019006 309 -----RILYK-LPGHTGS--VNESV-FHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 309 -----~~~~~-~~~h~~~--v~~~~-~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+.+ ++||.+. |..+- |.|...+++|||.=|.|.|||
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 7899653 55555 577788999999999999997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-12 Score=104.14 Aligned_cols=272 Identities=14% Similarity=0.290 Sum_probs=176.1
Q ss_pred ccEEEEEECCCCCe-EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTV-IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~ 135 (347)
..|.-+.|..+..+ |.....|+.|.+|++.. ..-...+..-.+++.++.|||||+.| .+...|-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 46777889888765 55567889999999963 23334456667789999999999655 56778999999998875432
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEE-----------------------------------cCCCceEEEeCCCCCceee
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSG-----------------------------------SDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------------------------~~d~~i~iwd~~~~~~~~~ 180 (347)
. +......+...++++++....+.. -++..+.+||---.-.+..
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 1 111112223344444443211111 1123345565433333333
Q ss_pred cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE-----------------------------------------
Q 019006 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----------------------------------------- 219 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------------- 219 (347)
+.....+..++|+|.++++++|+.|+.+|+-+--+-+..
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 344456888999999999999999999887542211000
Q ss_pred -------------------EEec------CCCCceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 220 -------------------MTLQ------GHQDMITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 220 -------------------~~~~------~~~~~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
..++ ...-.+.-++|++|..+++|-.. -+.+-+||++..+.. ..+.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~----avLi--- 359 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH----AVLI--- 359 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh----hhhh---
Confidence 0000 00112456899999999998654 367899999853321 1111
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
....|....|+|....|+.......+|+|.......+ ..++..=.|..+.|+-++..|+-++.|.-
T Consensus 360 --Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 360 --QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred --hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 1246888899999998888877778999987664444 33444457999999999999999999853
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-12 Score=115.02 Aligned_cols=232 Identities=20% Similarity=0.243 Sum_probs=149.4
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|.+++..+. ....+..+...+....|+|||++|+.+..+ ..|++||+.+++... +...........+++++..
T Consensus 171 ~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4777776432 233455566678899999999999877644 479999998875432 2233344445677787766
Q ss_pred EEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-N--DVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++++.+.++ .|.+||+.++.......+........|+|+++.++..+.. + .|+++|+.+++.. .+..+......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~ 326 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNAS 326 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccC
Confidence 666666555 5888898876544333333334567899999988765543 3 5888888776543 33334455678
Q ss_pred EEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVYIWDT 305 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~ 305 (347)
+.|+|++++++.++.++ .|.+||+.... ...+.... ......|+|||++|+..+.++ .+++.+.
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDTG-----LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCC-----eEEccCCC-----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 89999999999887765 78888876421 12222111 123457999999998877653 4666664
Q ss_pred CCceeeEEecCCccCeeeEEE
Q 019006 306 TSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~ 326 (347)
. +.....+..+.+.+...+|
T Consensus 397 ~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 D-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CceeeECCCCCCCcCCCCC
Confidence 4 4445556555555655555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=116.36 Aligned_cols=220 Identities=14% Similarity=0.169 Sum_probs=137.9
Q ss_pred ecCccccEEEEEECCCCCeEEEee---CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCC--eEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGS---HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDK--TLRA 126 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg--~i~i 126 (347)
+..+...+...+|+|+|+.||..+ .+..+++|++.+.. ...+......+....|+|||+.|+.. +.+| .|.+
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 444566889999999999888654 24568899886432 12222233344568999999988754 4454 5888
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCCCCceeecCCCCceEEEEEcCCCCeEEEEec
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
||+.+++.. .+..+...+....+++++..++++...++...+| |+.++................|+|+++.++..+.
T Consensus 272 ~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 999877643 3333344455677788776555555555555555 6655543322222334567889999999876554
Q ss_pred C---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc---EEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 205 D---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK---LCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 205 d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~---i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+ ..|++||+.+++... +... .......|+|||+.|+..+.++. +.++++.. .....+..+ ...
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-----~~~~~l~~~----~~~ 419 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-----RFKARLPAT----DGQ 419 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-----CCeEECccC----CCC
Confidence 3 358889998776432 3221 22356789999999999887764 56666642 222333333 234
Q ss_pred eEEEEECC
Q 019006 279 LLKCGWSP 286 (347)
Q Consensus 279 ~~~~~~s~ 286 (347)
+...+|+|
T Consensus 420 ~~~p~Wsp 427 (429)
T PRK03629 420 VKFPAWSP 427 (429)
T ss_pred cCCcccCC
Confidence 55566776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=120.59 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=173.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.-..+.++.+|++|+.++..|.+..+|..+++....+.. ...|.++.+..... +++......+.+||-. +..+.-+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCC-CcEEeeh
Confidence 346788999999999999999999999999887665532 23455555544432 3344566778889853 4455556
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.....+..+.|-|---.|++++..|.++--|+.+|+.+..+..-.+.+..|+-+|-+..+-+|...|+|.+|.....++.
T Consensus 207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 66678899999998888899999999999999999998888777788888999999999999999999999986643332
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
. + +..| ...|.++++.++|.|+||.+.|..++|||++.-..+..+.. .-....++||..+-+. +|....
T Consensus 287 v---K-iLcH----~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA--~~~G~~ 355 (545)
T KOG1272|consen 287 V---K-ILCH----RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLA--LSYGDH 355 (545)
T ss_pred H---H-HHhc----CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccccee--eecCCe
Confidence 2 1 2222 46789999999999999999999999999998765554443 3456777888776433 333334
Q ss_pred EEee
Q 019006 342 IYLG 345 (347)
Q Consensus 342 i~i~ 345 (347)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 5555
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=116.84 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=131.0
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..|...+.+.+|+|+|+.|+..+.+ ..|++|++.+... ..+..+........|+|||+.|+ +.+.+| .|+
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 455667789999999999999887643 4699999864322 23333444455789999999875 445555 599
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.+++. ..+..+........+++++..++++...++. |.++|+.+++..............+|+|+++.++..+
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 999988764 3444444444456777777656555555555 5556766554332222223344689999999988765
Q ss_pred cCC---cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCC
Q 019006 204 IDN---DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMR 256 (347)
Q Consensus 204 ~dg---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~ 256 (347)
.++ .|.+||+.+++.. .+. +........|+|+|++++..+.+ +.|.++|+.
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 433 5999999877654 332 22234567999999988766543 357777764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.8e-12 Score=112.71 Aligned_cols=234 Identities=17% Similarity=0.238 Sum_probs=147.0
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CC--eEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.+.++|..+.. ...+..+...+.+..|+|||++|+..+. ++ .|.+||+.+++... +...........+++++..
T Consensus 199 ~l~i~d~dG~~--~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN--EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC--ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 45666665432 2344455667888999999999887653 33 58888988776422 2222222334567788776
Q ss_pred EEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEE-ecCCCCcee
Q 019006 157 LVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMT-LQGHQDMIT 230 (347)
Q Consensus 157 ~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~-~~~~~~~i~ 230 (347)
++++.+.++. |.++|+.++.......+........|+|+++.++..+. ++ .|+++|+.+++.... ..+ ....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~ 353 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNL 353 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCc
Confidence 7777777775 67778876654433333345567899999998876553 33 577778877764332 222 2234
Q ss_pred EEEECCCCCEEEEEcC-CCc--EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-C--eEEEEe
Q 019006 231 GMSLSPDGSYLLTNGM-DCK--LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-R--MVYIWD 304 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-g--~i~vwd 304 (347)
..+|+|+|++++..+. ++. |.++|+.... ...+.... .. ....|+|||++|+..+.+ | .+++++
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~~--~d---~~ps~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA-----MQVLTSTR--LD---ESPSVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCC-----eEEccCCC--CC---CCceECCCCCEEEEEEecCCceEEEEEE
Confidence 5789999999877654 343 4455655321 12222111 11 134699999998775543 3 478888
Q ss_pred CCCceeeEEecCCccCeeeEEEcCC
Q 019006 305 TTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 305 ~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
. ++....+++.+.+.+...+|+|-
T Consensus 424 ~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 424 I-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred C-CCCceEECcCCCCCcCCCccCCC
Confidence 6 56667778777778888889874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=104.27 Aligned_cols=149 Identities=23% Similarity=0.414 Sum_probs=106.1
Q ss_pred eEEEEcCCCCEEEEecC----------CCeEEEEECCC-Cceeeeeec-cCcceeEeecCCCCCCEEE-EEcCCCceEEE
Q 019006 104 LDLHWTTDGSQIISASP----------DKTLRAWDVET-GKQIKKMAE-HNSFVNSCCPSRRGPPLVV-SGSDDGTAKLW 170 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-s~~~d~~i~iw 170 (347)
..+.|+++|++|+.-.. -+...+|.++. +.....+.. ....|.+++++|.+..+++ .|..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45779999887664322 13355555522 222333322 2345899999998876644 45677899999
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM- 246 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~- 246 (347)
|++ ...+..+. ...++.+.|+|+|+++++++.+ |.|.+||.++.+.+.+.. |. .++.++|+|+|++++++..
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEec
Confidence 997 55555554 3567889999999999988744 669999999877776654 33 4789999999999999864
Q ss_pred -----CCcEEEEeCC
Q 019006 247 -----DCKLCIWDMR 256 (347)
Q Consensus 247 -----d~~i~~wd~~ 256 (347)
|+.++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 7888999874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-13 Score=123.75 Aligned_cols=182 Identities=13% Similarity=0.239 Sum_probs=147.3
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCce-----EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI-----TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
..++.++.++.+.+||...........+.... .-+.++++.-++++|+.-+.|.+|+.........+.+|.+.|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF 179 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF 179 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE
Confidence 46777888899999999887777666655432 2233556666889999999999999875555557899999999
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
++.++.+|+++++.+.|+++++|++.+.+... .+.-.+...++.+.|.|. ++++++.|.+.++|+.. +..
T Consensus 180 ~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~ 249 (967)
T KOG0974|consen 180 SIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ 249 (967)
T ss_pred EEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cce
Confidence 99999999999999999999999998654322 122234578999999998 99999999999999654 444
Q ss_pred eEEecCCc-cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 311 LYKLPGHT-GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 311 ~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+..+.+|. +.|+.++.++...+..|++.|+.+++|++
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 55888886 56999999999999999999999999984
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=105.28 Aligned_cols=194 Identities=14% Similarity=0.238 Sum_probs=132.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCC-EEEEecCCCeEEEEECCC---
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGS-QIISASPDKTLRAWDVET--- 131 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~--- 131 (347)
+..+..++|++.-..+|++..|-.|++|+-..++.. .++ .....|++++|-|.+. .|+.|+. +-|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt--~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT--KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc--eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 356788999997788999999999999987553322 222 2345799999999654 4555555 4588997542
Q ss_pred -Cceee----------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeE
Q 019006 132 -GKQIK----------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKI 199 (347)
Q Consensus 132 -~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 199 (347)
++.++ .-.+| ..|.++.+.+++..++-+.-.|..|.+||..++..+... .....++-+.|+|++.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11111 11122 467788888887655555556788999999988766554 234578899999999999
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++++.|+..++|............--.+.|...+|+|.|++|+-.... .-++|.+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl 308 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSL 308 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence 999999999999654332222222223489999999999977654432 3344543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-10 Score=99.89 Aligned_cols=251 Identities=14% Similarity=0.233 Sum_probs=161.3
Q ss_pred ccEEEEEECCCCCeEEEeeC----CCcEEEEeccCCCeee---EEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 58 SAVYTMKFNPAGTVIASGSH----DRDIFLWHVHGDCKNF---MVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~----d~~v~~w~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
....-|+++|++++|.+... ++.|..|.+..+...+ ............++.+|++++|+++. .+|.+.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34556788999999988876 5689999886542222 22222234556799999999998886 4899999999
Q ss_pred CC-Cceeee--ee-----------ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--cee----ecCCCCceEE
Q 019006 130 ET-GKQIKK--MA-----------EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQ----TFPDKYQITA 189 (347)
Q Consensus 130 ~~-~~~~~~--~~-----------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~----~~~~~~~v~~ 189 (347)
.. +..... .. ........+.+.+++..++++.-....|.+|++.... ... ..+.......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 86 333221 11 1123345677778777677766667789999987654 211 2355567889
Q ss_pred EEEcCCCCeEEEEe-cCCcEEEEeCC--CCce--EEEecC----C--CCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 190 VSFSDASDKIYTGG-IDNDVKVWDLR--KGEV--SMTLQG----H--QDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 190 ~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
+.|+|+++++++.. .++.|.+|++. .+.. ...+.. . ......|.++|+|++|+++. .++.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999887665 56789999887 4422 111111 1 12467899999999988765 457899999954
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEee-CCCeEEEEeC--CCceeeE
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDT--TSRRILY 312 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~--~~~~~~~ 312 (347)
.......+..+... -.....++++|+|++|+++. .++.|.+|+. .+|.+..
T Consensus 277 ~~g~l~~~~~~~~~----G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 277 ATGTLTLVQTVPTG----GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTTEEEEEEEEES----SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCceEEEEEEeCC----CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 22222222222211 12367889999999998876 5678999965 5666544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-12 Score=113.82 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=134.2
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeC---CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCe--E
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSH---DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKT--L 124 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~--i 124 (347)
..+..|...+...+|+|+|+.|+..+. +..|++|++.+.. ...+..+...+....|+|||+.|+ +.+.++. |
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 345678889999999999998887654 4679999986432 234455666778889999999875 5555655 7
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.+||+.+++. ..+..+........+++++..++++...++ .|.++|+..+...........+....|+|+++.++..
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 7778877654 445445444555677777765555544444 5777787665443333334456678899999998876
Q ss_pred ecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC------CcEEEEeCC
Q 019006 203 GID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD------CKLCIWDMR 256 (347)
Q Consensus 203 ~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d------~~i~~wd~~ 256 (347)
+.+ ..|.+||+..+.. ..+. ....+..+.|+|+|+.|+..+.+ ..+.++|+.
T Consensus 352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 543 3588888765543 2232 12346788999999988765432 256677764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-11 Score=110.13 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=148.7
Q ss_pred EEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCE
Q 019006 81 IFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157 (347)
Q Consensus 81 v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (347)
|.++|..+. ....+..+...+....|+|||++|+..+.+ ..|.+||+.+++... +...........+++++..+
T Consensus 181 l~~~d~~g~--~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 181 LQRSDYDGA--RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEECCCCC--CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 666666543 233455667788999999999999876543 368899998875432 22222333346677877766
Q ss_pred EEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeEE
Q 019006 158 VVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITGM 232 (347)
Q Consensus 158 ~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v 232 (347)
+++.+.++ .|.++|+.++................|+|+++.++..+. +| .|+++|+.+++...... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~ 336 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARP 336 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccce
Confidence 66666665 577789887664433333344566789999998776553 33 58888887776432221 11233457
Q ss_pred EECCCCCEEEEEcCC-C--cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCC
Q 019006 233 SLSPDGSYLLTNGMD-C--KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTT 306 (347)
Q Consensus 233 ~~~~~~~~l~t~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~ 306 (347)
.|+|+|++++..+.+ + .|.+||+.... ...+.... .. ....|+|||++|+..+.+ ..|++++..
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-----~~~lt~~~--~~---~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGS-----VRILTDTS--LD---ESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCC-----EEEccCCC--CC---CCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 899999998876643 3 57788876432 12222111 11 134799999999876643 357777875
Q ss_pred CceeeEEecCCccCeeeEEEcCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
+.....+..+.+.+...+|+|-
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECcCCCCCcCCCccCCC
Confidence 4444566666677888888874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=114.88 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=110.1
Q ss_pred CCCeEEEeeCCCcEEEEeccCCC-eeeEEE--eCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCc
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDC-KNFMVL--KGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNS 143 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~--~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 143 (347)
.+--|..|=.-|.|.+.+..... ..+... .-.+..|+++.|-|.++ .++.+-.+|.+.++|..--. ....
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~ 257 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATA 257 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCC
Confidence 34445566666777766653210 000001 11236899999998654 55566789999999862100 0000
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEE-eCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLW-DMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iw-d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
. .....+.. ..+. |..| ...++.++... ..+..++..+|+||+.+||+.+.||.+||||..+.+....
T Consensus 258 p--~~~~~k~~-~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 258 P--SYQALKDG-DQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred C--cccccCCC-CeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 0 01111111 1121 1111 11122222221 2234789999999999999999999999999998877666
Q ss_pred ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
++..-+...|++|+|||+|+++||+|.-|.||.+..
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 666667799999999999999999999999999863
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-12 Score=113.72 Aligned_cols=208 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC--CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD--GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
..|.++|.. +.....+..+...+....+++++..++++...+ ..|.+||+.++................|+|+++.+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 356677764 343444545566677778888876554444333 35999999877654333333456688999999988
Q ss_pred E-EEecCCcEEEE--eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 200 Y-TGGIDNDVKVW--DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 200 ~-~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+ +.+.+|...+| |+..+. ...+..+........|+|||++|+..+. ++...+|.+..... .. ..+....
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~-~~lt~~g--- 327 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AA-QRVTFTG--- 327 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ce-EEEecCC---
Confidence 6 45677765555 555443 3444445445667899999998876553 46677776542111 11 1111111
Q ss_pred ccceEEEEECCCCCEEEEeeCCC---eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDR---MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
......+|+|||++|+..+.++ .|++||+.+++.. .+..+ .......|+|+++.|+.++.++
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 1223567999999998777554 6999999887654 34322 3346789999999888877554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-11 Score=100.57 Aligned_cols=240 Identities=17% Similarity=0.265 Sum_probs=151.5
Q ss_pred CccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCC-------------eeeEEEeCcccceeEEEEcCCCCEEEEecC
Q 019006 55 GHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC-------------KNFMVLKGHKNAILDLHWTTDGSQIISASP 120 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 120 (347)
.-+..|.+|+|-|.+ .-|+.|...| |.+|...... ..+..-++| ..|++|+|.+||..+++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 456789999999965 5677777754 7789764221 011223455 68999999999999999985
Q ss_pred -CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCCCCceEEEEEcCCCCe
Q 019006 121 -DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASDK 198 (347)
Q Consensus 121 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 198 (347)
|..|.|||.+++..+.-.....+.+..+.++|++. .+++++-|+..++|+..+...... .-....|...+|+|+|.+
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 46799999999876554433445566677888775 567789999999996554332222 223348999999999987
Q ss_pred EEE-EecCCcEEEEeCC----CCc-----------eEEEec-----CC----CCceeEEEECCCCCEEEEEcCC------
Q 019006 199 IYT-GGIDNDVKVWDLR----KGE-----------VSMTLQ-----GH----QDMITGMSLSPDGSYLLTNGMD------ 247 (347)
Q Consensus 199 l~~-~~~dg~i~iwd~~----~~~-----------~~~~~~-----~~----~~~i~~v~~~~~~~~l~t~~~d------ 247 (347)
++. .+..-. +|.+. ... .+..++ .. .+.+.+++|.|.|++|++.-..
T Consensus 295 LLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 295 LLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL 372 (445)
T ss_pred EEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence 654 333333 33321 110 111111 11 2467899999999999986433
Q ss_pred --CcEEEEeCCCCCCcCceeEEE-eccccccccceEEEEECC---CCCEEEEeeCCCeEEEEeC
Q 019006 248 --CKLCIWDMRPYAPQNRCVKIL-EGHQHNFEKNLLKCGWSP---DGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 248 --~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~---~g~~l~sgs~dg~i~vwd~ 305 (347)
..|.+||.+..- .+... -+.... ....-+.|+| +|.+|..+-+.|.+.-|++
T Consensus 373 ~k~~i~~fdtr~sp----~vels~cg~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 373 CKLHISRFDTRKSP----PVELSYCGMIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhcccccC----ceEEEecccccC--CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 346778876321 11111 111110 1122334544 6788888888888888765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-11 Score=104.23 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=163.7
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecC
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPS 151 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 151 (347)
+++-..++.|.+.|... .+....+......-..+.|+|||++++.++.||.|.++|+.+.+.+.++..... ...++.+
T Consensus 9 ~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred EEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence 34566789999999753 344455554434445578999999999999999999999999998888865443 4557777
Q ss_pred CCCCCEEEEEcCCCceEEEeCCCCCceeecCC--------CCceEEEEEcCCCCeEEEEec-CCcEEEEeCCCCceE-EE
Q 019006 152 RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--------KYQITAVSFSDASDKIYTGGI-DNDVKVWDLRKGEVS-MT 221 (347)
Q Consensus 152 ~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~-~~ 221 (347)
+++..++++...++.+.++|.++.+.++.++. ..++..+..++....++..-. .+.|.+.|....+.. ..
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 88776777777899999999999888877643 235777777888776665544 578888887665422 22
Q ss_pred ecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE-------EE--CCCCCEE
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-------GW--SPDGSKV 291 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--s~~g~~l 291 (347)
............|+|+++|++.+ ..++.|.++|.... ..+..+..-..........+ .| ...+...
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 22234567889999999987765 45678999998742 22222221111111111111 11 1223333
Q ss_pred EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe----cCCCcEEeecC
Q 019006 292 TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC----SSDKQIYLGEI 347 (347)
Q Consensus 292 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~D~~i~i~~~ 347 (347)
++.-....+.+||....+.+.+++...+. .-++-||+++++... ..+.+|.+.|.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 23223346668899999999999887666 778889999999877 34477887763
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=104.77 Aligned_cols=246 Identities=14% Similarity=0.257 Sum_probs=166.2
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...++||.+.|++...-|...-+++.+.|.++++|--....+-.. +...-..+++++.+.++...|+.+-.+|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 356789999999999999899999999999999996532211111 1112245789999999999999999999998886
Q ss_pred CCC----CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec
Q 019006 129 VET----GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 129 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.. -...+....|...+....+... ...+++.+.|..+.---.+.+..+..+......+++.++-. +.+.|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEeccc
Confidence 543 2234445567777777666554 35677777776654333333333322211111122222211 5566777
Q ss_pred CCcEEEEeCC--CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 205 DNDVKVWDLR--KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 205 dg~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
.|.|.+-.+. .-..+.++.+|.+.+.+++|.+....|+++..|..+.+||+.-... ....+.+|. ..+..+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~----~kV~~l 246 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHN----DKVQAL 246 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccch----hhhhhh
Confidence 7776665443 3456778899999999999999999999999999999999864221 122334443 345555
Q ss_pred EECCCCCEEEEeeCCCeEEEEeC
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
.+-+--+.|.+++.||.|.+|+.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEec
Confidence 55666778999999999999984
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-12 Score=109.38 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=153.9
Q ss_pred CcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 98 GHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
.|...-+.|..+|||+|++ +|-..-.|++||+.+-.. .|.-|. +.+..+....++-..++.--.|.+|.+-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc--
Confidence 4666778899999999865 566778999999876432 233232 2222222211111112222344444442211
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
.......-...-..++++...--|++++....|+-+++..|..+..+......++++..++-..+|++|+.+|.|-+||.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 11111111112234555555555677777778999999999988888777788999999999899999999999999998
Q ss_pred CCCCCcCcee--EEEeccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC--ccCeeeEEEcCCC
Q 019006 256 RPYAPQNRCV--KILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH--TGSVNESVFHATE 330 (347)
Q Consensus 256 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 330 (347)
|..+.....- .....+. .+....+.++.|+.+|-.+++|+.+|.+++||++..+++. ...| +-+|..+.|.+.+
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccC
Confidence 8532211110 0011111 1112358999999999999999999999999999988764 3445 4568899998874
Q ss_pred --CEEEEecCCCcEEeec
Q 019006 331 --PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 331 --~~l~s~s~D~~i~i~~ 346 (347)
+.++|... ..++|||
T Consensus 284 ~q~~v~S~Dk-~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSMDK-RILKIWD 300 (703)
T ss_pred CCceEEecch-HHhhhcc
Confidence 34443322 3467775
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-12 Score=111.35 Aligned_cols=208 Identities=17% Similarity=0.227 Sum_probs=146.0
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEE
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITA 189 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~ 189 (347)
|...++|....||.+++|+...++.-..+... +..+..++...|.+.-+.............
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~- 64 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------ASLSGTCTYTKWGLSADYSPMKWLSLEKAK- 64 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc-----------------hhccCcceeEEEEEEeccchHHHHhHHHHh-
Confidence 45678999999999999999887764444211 112233445556532111100000000011
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
.-+.+...++-|...|.|.+|+...++....+. .|.+.|+++.++.+-..+.+++.|+.+..|+... .+....
T Consensus 65 -~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~----~~~~~~ 139 (541)
T KOG4547|consen 65 -KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE----KVIIRI 139 (541)
T ss_pred -hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc----ceeeee
Confidence 112244567789999999999999998777665 6888999999999999999999999999999863 223333
Q ss_pred EeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC------CCEEEEecCCCc
Q 019006 268 LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT------EPVIGSCSSDKQ 341 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~s~D~~ 341 (347)
.... ...+.+++.+|||..|++++ +.|++||..+++.+..++||.++|..+.|... ...|.+...+.-
T Consensus 140 ~~~~----~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 140 WKEQ----KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eccC----CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 3322 24577888999999999988 48999999999999999999999999999887 445555555655
Q ss_pred EEeec
Q 019006 342 IYLGE 346 (347)
Q Consensus 342 i~i~~ 346 (347)
+.+|.
T Consensus 214 i~~w~ 218 (541)
T KOG4547|consen 214 ITVWV 218 (541)
T ss_pred eeEEE
Confidence 66653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-11 Score=98.41 Aligned_cols=245 Identities=16% Similarity=0.290 Sum_probs=160.2
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce-----eeeeeccCc------------ceeEeecCCC-CCCEEEEE
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ-----IKKMAEHNS------------FVNSCCPSRR-GPPLVVSG 161 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~------------~v~~~~~~~~-~~~~~~s~ 161 (347)
.+-|.++.|...|++|++|..+|.|-++.-+.... ...++.|.. .+..+.+.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45678999999999999999999999986432211 112222321 2233333332 33456677
Q ss_pred cCCCceEEEeCCCCCcee-----------------------------------ec--CCCCceEEEEEcCCCCeEEEEec
Q 019006 162 SDDGTAKLWDMRQRGAIQ-----------------------------------TF--PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 162 ~~d~~i~iwd~~~~~~~~-----------------------------------~~--~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.|.+|++|-+..+.... .+ .|...++++.++.|.+.++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999875432110 01 1334588999999888877654
Q ss_pred CCcEEEEeCCCCceEE---EecCC-----CCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc---
Q 019006 205 DNDVKVWDLRKGEVSM---TLQGH-----QDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--- 272 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~---~~~~~-----~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--- 272 (347)
|-.|.+|++.-....+ .++.+ ..-|++..|+|. .+.++=.+..|+|++-|+|....-....+.++...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 5679999987543322 33333 245888999996 56666677889999999984321111111111110
Q ss_pred -----cccccceEEEEECCCCCEEEEeeCCCeEEEEeC-CCceeeEEecCCc------------cCe---eeEEEcCCCC
Q 019006 273 -----HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT-TSRRILYKLPGHT------------GSV---NESVFHATEP 331 (347)
Q Consensus 273 -----~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~------------~~v---~~~~~~~~~~ 331 (347)
..+-..|..+.|+++|+|+++-+.- +|++||+ ...+.+..++-|. ..| ..++|+-++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1122457788999999999987653 8999998 4455555555553 233 5788999999
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
.++|||....+++++
T Consensus 343 ~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFN 357 (433)
T ss_pred eEecccccceEEEec
Confidence 999999999988876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-10 Score=99.04 Aligned_cols=269 Identities=14% Similarity=0.189 Sum_probs=155.1
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-----cCC-----CeEEEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-----SPD-----KTLRAWD 128 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~~d-----g~i~iwd 128 (347)
.++...++++|+++|.+. +..+.|++..... ...... ...+.++.|+|-|.+|.+= -.+ -.+++|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~-~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK-VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCc-EEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 367778889998887654 4577888765332 222222 2278899999999888762 122 3477999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEE-----------------
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVS----------------- 191 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~----------------- 191 (347)
++++.....+......-+...++.+. .+++--..+.+.+|++...+.+..--+...++.+.
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 98855443333221111112222221 12222223445555544322111111112233333
Q ss_pred -----------------------------------EcCCCCeEE---EEecC---------CcEEEEeCCCCceEEEecC
Q 019006 192 -----------------------------------FSDASDKIY---TGGID---------NDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 192 -----------------------------------~~~~~~~l~---~~~~d---------g~i~iwd~~~~~~~~~~~~ 224 (347)
|++-+.-|+ +..-| .++++.++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 333332111 11111 134444444222333332
Q ss_pred CCCceeEEEECCCCCEEEEE--cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---Ce
Q 019006 225 HQDMITGMSLSPDGSYLLTN--GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RM 299 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~ 299 (347)
-.++|.++.|+|+++.++++ -.-..+.|+|++- ..+..+. .+.-.++-|+|.|++|+.++-+ |.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~------egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFP------EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCC------CCCccceEECCCCCEEEEeecCCCCCc
Confidence 25789999999999877664 3456899999862 2332222 2344567799999999887754 78
Q ss_pred EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec------CCCcEEeecC
Q 019006 300 VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS------SDKQIYLGEI 347 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~i~~~ 347 (347)
+-|||+.+.+++.++.+-. -+-+.|+|+|.++.|+. -|..++||.+
T Consensus 338 mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999999999888876543 34567999999988877 4677888864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=114.51 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=149.2
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE---eecCCCCCCEEEEEcCCCceEEEeCCCC-Cce
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS---CCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAI 178 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~ 178 (347)
|....+..+...++.+..+..+-+||...+..+.++......... ..-.....-++++|+.-+.|.+|+.... .++
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333445556778888888999999999877666555432221111 1112223346889999999999998733 334
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
....|+..+..+.++.++.++++.+.|..+|+|++.+.+... ..-+|...+..++|.|+ +++|++.|.+.++|+...
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 455678899999999999999999999999999999887665 66789999999999987 999999999999997642
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.....+.+|. -+-+++++..++...+++++.|+.+++|++..
T Consensus 248 -----~~l~~y~~h~---g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 -----TQLEVYDEHS---GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----ceehhhhhhh---hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 2233555554 35689999999999999999999999998744
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-11 Score=96.55 Aligned_cols=244 Identities=20% Similarity=0.230 Sum_probs=157.0
Q ss_pred cccEEEEEECC---CCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCc---c---cceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 57 QSAVYTMKFNP---AGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGH---K---NAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 57 ~~~V~~v~~~~---~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h---~---~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
.+.++.|.|.. +|. .|+-+..+|.|.++...... ....+++- + ....++.|++.+..++++..+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 35577777763 455 56778888999998775332 22222221 1 12457889999999999999999986
Q ss_pred EECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceee--cCCCCceEEEEEcCC-CCeEE
Q 019006 127 WDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQT--FPDKYQITAVSFSDA-SDKIY 200 (347)
Q Consensus 127 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~--~~~~~~v~~~~~~~~-~~~l~ 200 (347)
-+...... ++..+.|.-..+.+.++...++++.+|+.|+.+..||+|- +..+.. ..|...|.++.-+|. +.+++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 65544433 3367788888888899888889999999999999999983 222222 234567888777754 56899
Q ss_pred EEecCCcEEEEeCCC-CceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCc-eeEEEecccccccc
Q 019006 201 TGGIDNDVKVWDLRK-GEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNR-CVKILEGHQHNFEK 277 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~ 277 (347)
+|+.|-.|++||.|+ ++++..-. -.+.|+.+.++|.-. .++.+..-+..++-+......... .....+.| ..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~h----dS 302 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIH----DS 302 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccc----cc
Confidence 999999999999994 55544332 236689999988532 233333334466666654222111 11122222 23
Q ss_pred ceEEEEECCCCCEEEEee-CCCeEE-EEeCC
Q 019006 278 NLLKCGWSPDGSKVTAGS-SDRMVY-IWDTT 306 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs-~dg~i~-vwd~~ 306 (347)
-+....|.....+||+++ .|+.++ +|-..
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeec
Confidence 455556655567788865 455544 66433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-09 Score=88.33 Aligned_cols=269 Identities=11% Similarity=0.208 Sum_probs=172.7
Q ss_pred CCcEEEEeccCCCeee--EEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCC--Cce--eeeeeccCcceeEe
Q 019006 78 DRDIFLWHVHGDCKNF--MVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVET--GKQ--IKKMAEHNSFVNSC 148 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~--~~~~~~~~~~v~~~ 148 (347)
+.-|++|++.+....+ ..+..+....+-|+|+|+.++|.++-.+ |.|..|.++. |+. +............+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987433222 2334566778899999999999988654 6677776654 443 22222222233456
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCCCCCce----eecCCCC----------ceEEEEEcCCCCeEEEEec-CCcEEEEeC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAI----QTFPDKY----------QITAVSFSDASDKIYTGGI-DNDVKVWDL 213 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----~~~~~~~----------~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 213 (347)
+..+++..++.+-...|.|.++-++....+ +...+.. .+-...++|+++++++..- ..+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 667776666666667789999988653322 2222222 2777889999999987653 346999999
Q ss_pred CCCceEEEecC---CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccc--cceEEEEECCC
Q 019006 214 RKGEVSMTLQG---HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFE--KNLLKCGWSPD 287 (347)
Q Consensus 214 ~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~ 287 (347)
..++....-+. ...--+-|.|+|++++..+.. -+++|.+|...+....-..++.+......+. .....+..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 87654322111 122357799999999887765 4789999998764222223333322222222 24556678999
Q ss_pred CCEEEEeeC-CCeEEEEeCCC--cee--eEEecCCccCeeeEEEcCCCCEEEEecCCC-cEEeec
Q 019006 288 GSKVTAGSS-DRMVYIWDTTS--RRI--LYKLPGHTGSVNESVFHATEPVIGSCSSDK-QIYLGE 346 (347)
Q Consensus 288 g~~l~sgs~-dg~i~vwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~-~i~i~~ 346 (347)
|++|.++-. ...|-+|.+.. +++ +...+.+.....++.|++.+.+|+.+..|+ +|.++.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 999988753 33788886543 332 344556666789999999999999888753 466654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=104.03 Aligned_cols=279 Identities=15% Similarity=0.220 Sum_probs=189.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe--------------eeEEEeCcccceeEEEEcCCCCEEEEecCCC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK--------------NFMVLKGHKNAILDLHWTTDGSQIISASPDK 122 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 122 (347)
.....+++|+.+..++|+||.||.+++-.+..... .-..+.||+..|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 35678999999999999999999999998753211 0135789999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeec--cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 123 TLRAWDVETGKQIKKMAE--HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
.|.+|-+-.+.....+.. ..+.|.+.++..++. .++....||.|.+=.+........--.......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999877765444433 234566777777665 45566777777665554322211111112345688999999888
Q ss_pred EEecCCcEEEEeCCCCc-------eEEE----ecCCCCceeEEEEC--------CCCCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 201 TGGIDNDVKVWDLRKGE-------VSMT----LQGHQDMITGMSLS--------PDGSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~v~~~--------~~~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.+-.+|.+.+||....- +... +......|..+.|. |+...|+.+-..|.+.+..-.. .
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN---D 249 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN---D 249 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC---C
Confidence 88899999999975321 1111 11111235555553 5777888888888887753221 1
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCC---------CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---------RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
..++-.-.+ -.+....|+++|..||.++.+ +.|.+|. .-|+.+..++-....|+.+.|-..+-.
T Consensus 250 ~~Pvv~dtg------m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG------MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc------cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 111111111 246678899999999988753 3566665 346777788888889999999888876
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
||-+ .|+.|++..|
T Consensus 323 iA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFANI 336 (1189)
T ss_pred EEEE-ecceEEEEee
Confidence 6544 5677776543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-12 Score=122.05 Aligned_cols=192 Identities=17% Similarity=0.313 Sum_probs=144.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.-|-..|.+|.=+|.....+||+.||.|++|.......... ...|. ..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 3445567788888889999999999999999998853322221 22233 789999999999999999999999999876
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEE---cCCCceEEEeCCCC--CceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG---SDDGTAKLWDMRQR--GAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+.....+.|+....++.|.. .+++++ +.++.+.+||.-.. ...-..-|...++++++-|....+++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 444555566766666655543 234443 35788999996422 211223456789999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
|.|++||++..+..+.++. ++ ...++++++..|.++||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999998777666654 44 5678999999999999998754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=111.95 Aligned_cols=283 Identities=17% Similarity=0.244 Sum_probs=191.6
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-cccceeEEEEcCCC--CEEEEecCCCeEEEEECCCC-
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-HKNAILDLHWTTDG--SQIISASPDKTLRAWDVETG- 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~- 132 (347)
.+.+.++..+|.|+-+|.++.-|.. +-++.....+..-+.. ..-.|-.+.|+|.. .+-+..-....-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 3567888999999999999887754 4566544343333321 12246778888753 34444444555678987542
Q ss_pred --ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec-CCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 133 --KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.....+.+|...+.+.-+.+..+..+++++.|-.+..||++... ++... .-......+.|+-....+.+.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 22334567888899999999999999999999999999998643 33332 223456778888777777777778889
Q ss_pred EEEeCCCC-ceEEEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 209 KVWDLRKG-EVSMTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 209 ~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
++||++.+ .+...+++|...|+.++|..- ...+.+.+.|+++++||........ .+...-+..++...|-|
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~-------~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES-------KRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc-------ceeccccCcceeccccc
Confidence 99999876 466788889888999888642 3467889999999999976421111 11111134566667777
Q ss_pred CCC--EEEEeeCCCeEEEEeC---------CC-ceeeEEecCCccCeeeEEEcCCC----------CEEEEecCCCcEEe
Q 019006 287 DGS--KVTAGSSDRMVYIWDT---------TS-RRILYKLPGHTGSVNESVFHATE----------PVIGSCSSDKQIYL 344 (347)
Q Consensus 287 ~g~--~l~sgs~dg~i~vwd~---------~~-~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~s~D~~i~i 344 (347)
-|. ++.---.+..+.+++. .+ .+.++++.||+..|.+.-|-..+ -.|+|-|.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 443 3332222234444432 22 35678999999999887775433 28999999999999
Q ss_pred ecC
Q 019006 345 GEI 347 (347)
Q Consensus 345 ~~~ 347 (347)
|-|
T Consensus 336 WpI 338 (1081)
T KOG0309|consen 336 WPI 338 (1081)
T ss_pred eec
Confidence 964
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-08 Score=87.13 Aligned_cols=262 Identities=10% Similarity=0.102 Sum_probs=153.8
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC----------CCeEEEEECCCCceeeeeeccCc-----
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP----------DKTLRAWDVETGKQIKKMAEHNS----- 143 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~----- 143 (347)
++|.+.|.... +....+..-..+ ..+ ++||++.|+.+.. +..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78888887542 333333322222 124 8999998887755 78999999999998887764222
Q ss_pred --ceeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC-CceE
Q 019006 144 --FVNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK-GEVS 219 (347)
Q Consensus 144 --~v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~ 219 (347)
.......++++..++++- +.+..+-+.|+.+++.+..++-......+..++.... +-+.||......+.. ++..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 223456677766555544 3388999999999988877654332222222222211 223444443333221 2111
Q ss_pred -EE---ecCCCCceeE-EEECC-CCCEEEEEcCCCcEEEEeCCCCCCcC-ceeEEEecccc--c-cccceEEEEECCCCC
Q 019006 220 -MT---LQGHQDMITG-MSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQH--N-FEKNLLKCGWSPDGS 289 (347)
Q Consensus 220 -~~---~~~~~~~i~~-v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~s~~g~ 289 (347)
.. +.....++.. -.|.+ +|+++..... |.|.+.|+....... .....+..... . .....--++++|+++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 1110111100 03344 7888877666 999999975322111 11111111000 0 011222388999999
Q ss_pred EEEEee----------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEec-CCCcEEeecC
Q 019006 290 KVTAGS----------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs----------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~D~~i~i~~~ 347 (347)
.|+... ..+.|.++|..+++.+.++.- ...+..++++|+++ +|..+. .++.|.+.|.
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 988743 225899999999999998874 45799999999998 777555 5787888763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=103.40 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=126.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..+...+...+|+|+|+.||.+..+ ..|++|++.+.. ...+..+...+.+++|+|||+.|+ +.+.++ .|.
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 444566678899999999999877654 479999986432 223344555667789999998776 444444 588
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.++.. ..+..+........+++++..++++...++ .|.++|+.+++...............|+|+++.++.++
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEE
Confidence 889887653 333333333333455666655555554444 47777877655433333344566788999999998887
Q ss_pred cCC---cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC
Q 019006 204 IDN---DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 204 ~dg---~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
.++ .|.+||+.++.... +... .......|+|++++|+....++
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 765 78999988765432 2222 2345578999999888776654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-10 Score=100.94 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=125.6
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCC--eEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDK--TLR 125 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg--~i~ 125 (347)
.+..+...+...+|+|+|+.|+..+.+ ..|++|++.+... ..+......+....|+|||++|+ +.+.+| .|.
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 344566788999999999988776543 3588888864322 22333334455688999999887 455555 588
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+||+.+++. ..+..+........+++++..++++...++ .|.++|+.+++...............|+|+++.++..+
T Consensus 271 ~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 271 VMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 889887654 334444444444567777766666655544 46666776665332222222234568999999988665
Q ss_pred cC-C--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeCC
Q 019006 204 ID-N--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDMR 256 (347)
Q Consensus 204 ~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~~ 256 (347)
.+ + .|.++|+.+++....... .......|+|+|+.++-.+.+ + .+.++++.
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 43 3 488899987764332222 223356899999988766543 3 45566653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-09 Score=87.55 Aligned_cols=220 Identities=13% Similarity=0.044 Sum_probs=142.4
Q ss_pred CCEEEEecCCCeEEEEECCCCceeee-eeccCccee---EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCc
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKK-MAEHNSFVN---SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQ 186 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~---~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~ 186 (347)
..+|+.||.-|...+|...+.+.... ...+...|. ..|... .-+..++.|.++++.++..+...... .....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~---~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK---FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc---cceeeccCCcceeEEEEecCcccceeeccccc
Confidence 45889999999999999886543222 222222111 112111 22455789999999987654322211 11134
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
..++.+++++.++++.+....|..|.+.... ... ......+.=.+.+|+.....+|++..||.+.|||+|.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 7889999999999999999999999886432 122 2223334456788999999999999999999999996543333
Q ss_pred eeEEEeccccccccceEEEEECCCCC--EEEEeeCCCeEEEEeCCCceeeEEec-------CCc-cCeeeEEEcCCCCEE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGS--KVTAGSSDRMVYIWDTTSRRILYKLP-------GHT-GSVNESVFHATEPVI 333 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~sgs~dg~i~vwd~~~~~~~~~~~-------~h~-~~v~~~~~~~~~~~l 333 (347)
....-+.+ .++.+..|.|++.|. +|.-.-.-+.+.|-|+++++..+.+. .|. .-|....|+.++.-+
T Consensus 241 ~~sstrp~---hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 241 EISSTRPH---HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred hhcccCCC---CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence 33333333 467899999998764 45555556789999999876554432 222 236666777666544
Q ss_pred EEec
Q 019006 334 GSCS 337 (347)
Q Consensus 334 ~s~s 337 (347)
-..+
T Consensus 318 ~v~~ 321 (344)
T KOG4532|consen 318 DVKN 321 (344)
T ss_pred cccc
Confidence 4433
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=110.46 Aligned_cols=280 Identities=17% Similarity=0.274 Sum_probs=185.4
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe------eeEEEeCcccceeEEEEcCCCCEEEEecCCCeE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK------NFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 124 (347)
..+.||+..|++++--.+.+-+++++.|.+|++|.+..+.. .......|+.+|.++-|..+-+++++ .||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 35779999999988777788899999999999999853211 22456789999999999988887776 47899
Q ss_pred EEEECCCCceeeeeec---cCcc-eeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeec-----CC-CCceEEEEEc
Q 019006 125 RAWDVETGKQIKKMAE---HNSF-VNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTF-----PD-KYQITAVSFS 193 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~-----~~-~~~v~~~~~~ 193 (347)
.+||.--++.+..+.. +... +..|..+- +..++++| +...+++++|.+.......+ +. ...+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999766665543322 2211 22222222 33445444 88899999999876654433 22 2457889999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEE-EeCCCCCCcCceeEEEeccc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI-WDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~ 272 (347)
+.|+.++++-.+|.|.+.|.|+|+.+..+..-.-....++ .|..+.|+....|.++.+ |-.-+. ... +....
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg----imh--~q~kp 958 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG----IMH--LQDKP 958 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC----eee--eccCC
Confidence 9999999999999999999999988776654333333344 466777888888888888 754321 100 10000
Q ss_pred cccccceEEEEECCCCCEEEEeeCCCeEEEEeC-CC---ceeeEEec--CCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT-TS---RRILYKLP--GHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~-~~---~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
..-..-. .-.-|.-|++....+.+.+|-- .. ...+.+++ ...+..+.++.-|-+.-+..+.+.|.|.+
T Consensus 959 ppepahf----lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAHF----LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchhh----hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0000000 0123667777777777888831 11 11222332 23567788888898888888888888875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-10 Score=98.07 Aligned_cols=266 Identities=15% Similarity=0.218 Sum_probs=151.8
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-----------CCeEEEEEC
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-----------DKTLRAWDV 129 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~ 129 (347)
+-+.|||.|.+|+|--..| |.+|--.. ...... -.| ..|.-+.|||+.+||+|-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~R-F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQR-FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc-HHHHHh-ccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4678999999999987766 55783211 111111 124 35788899999999999763 257999999
Q ss_pred CCCceeeeeec--cCcceeE-eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCe-------
Q 019006 130 ETGKQIKKMAE--HNSFVNS-CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDK------- 198 (347)
Q Consensus 130 ~~~~~~~~~~~--~~~~v~~-~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~------- 198 (347)
.+|...+.+.. ....+.. +.++.++ ++++--.. ..|.+|+...-.++..-+- -..|....|+|.++.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99988777754 2222222 2333333 44443333 5677776543221111000 112333334443333
Q ss_pred ----------------------------------------EEEEec-------CC---cEEEEeCCCCceEEEecCCCCc
Q 019006 199 ----------------------------------------IYTGGI-------DN---DVKVWDLRKGEVSMTLQGHQDM 228 (347)
Q Consensus 199 ----------------------------------------l~~~~~-------dg---~i~iwd~~~~~~~~~~~~~~~~ 228 (347)
|+.--. .| .+.|+.++........-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 321100 00 1222322222211111122356
Q ss_pred eeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe---eCCCeEEE
Q 019006 229 ITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYI 302 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---s~dg~i~v 302 (347)
|...+|-|.|+.+++.+. ..++.+|-+.........++.+.. ..+..+.|+|.|++++.+ |..|.+.+
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEE
Confidence 778899999998876553 357888887642222233333322 246678899999998875 45788999
Q ss_pred EeCCCceeeE-EecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 303 WDTTSRRILY-KLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 303 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+|.....+.. -.+.|. ..+.+.|.|.|+++.|++.-
T Consensus 522 ~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EecchhhhhhccCcccc-ccccceECCCCCEEEEeeeh
Confidence 9987533221 223333 45788999999999998853
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=99.63 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=119.5
Q ss_pred CccccEEEEEECCCCCeEEEeeC-CC--cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE-ecCCCe--EEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSH-DR--DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS-ASPDKT--LRAWD 128 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~--i~iwd 128 (347)
.+...+....|+|+|+.|+..+. ++ .|++|++.+... ..+...........|+|||+.|+. .+.+|. |.++|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 44556778999999998887654 33 478888754322 122222233456789999998864 456664 77778
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc--eEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-C
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-D 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 205 (347)
+.+++. ..+..+........+++++..++++...++. |.++|+.+++...............|+|+++.++..+. +
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC
Confidence 877654 3344444444556677777666666655554 55567766554332112222345689999998876554 3
Q ss_pred C--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeC
Q 019006 206 N--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDM 255 (347)
Q Consensus 206 g--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~ 255 (347)
+ .|.++|+.+++... +... .......|+|+|+.++....+ + .+.+++.
T Consensus 372 g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 372 GKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 4 46667887776433 2221 122345899999987765543 3 3566665
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-09 Score=95.43 Aligned_cols=238 Identities=13% Similarity=0.139 Sum_probs=138.8
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE---EEecCCC--eEEEEECCCCceeeeeeccCcceeEeecCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI---ISASPDK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG 154 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 154 (347)
.|.+.|.++. ....+........+=.|+|||+.+ ++...+| .|.+.++.+++.. .+...........+++++
T Consensus 166 ~l~~~d~dG~--~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQ--NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCC--CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCC
Confidence 4555555432 223343344455667899999752 2444444 5777788776542 222222333345677887
Q ss_pred CCEEEEEcCCC----ceEEEeCCCC---CceeecCCC-CceEEEEEcCCCCeEEEEe-cCCc--EEEEeCCC-CceEEEe
Q 019006 155 PPLVVSGSDDG----TAKLWDMRQR---GAIQTFPDK-YQITAVSFSDASDKIYTGG-IDND--VKVWDLRK-GEVSMTL 222 (347)
Q Consensus 155 ~~~~~s~~~d~----~i~iwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~-~~~~~~~ 222 (347)
..++++...+| .+..|++..+ ...+..... .......|+|+++.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 77766654433 3344676542 222222222 2345679999999877655 4564 44455542 2223344
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC---
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS--- 296 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~--- 296 (347)
..+...+....|+|+|++|+..+.+ ..|.+||+...+. ..+... ...+....|+|||++|+..+.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~----~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-----YQLTTS----PENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-----EEccCC----CCCccceEECCCCCEEEEEECCCC
Confidence 4444566788999999988866543 3688999864321 122211 123456789999998875433
Q ss_pred CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 297 DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
...|+++|+..++.. ++....+.+...+|+|-.
T Consensus 394 ~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 357999999877643 444455667788888754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=95.96 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=158.9
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC--EEEE-----ecCCCeEEEEECCCCc
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS--QIIS-----ASPDKTLRAWDVETGK 133 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s-----~~~dg~i~iwd~~~~~ 133 (347)
++..|+.|..+.| --..+.+++|++.+... ...+-|...|..+.++|... .+++ .|.-+.++||......
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~--~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKT--IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccc--eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 5777877665432 22336789998854222 23345677899999998633 3443 3455679999765221
Q ss_pred e-----eeeeeccCcceeEeecCCCCCCEEEEEcC-----------CCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 134 Q-----IKKMAEHNSFVNSCCPSRRGPPLVVSGSD-----------DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 134 ~-----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
. .+.|... +.| ...+...+..+|+..+. +.++.+.++........+...+.|.++.|++++.
T Consensus 206 ~~~~~a~ksFFka-dkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 206 QHQPVANKSFFKA-DKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred ccchhhhcccccc-cee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence 1 1112111 111 23444444444443332 2467777777555566677788999999999998
Q ss_pred eEEE--EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccc
Q 019006 198 KIYT--GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 198 ~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
.+++ |-.=-++.|||++ +..++.+. .++=+++-|+|.|++++.+|-+ |.|-+||+.+.+ ++..+.
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~--- 353 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFK--- 353 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccc---
Confidence 8775 4455689999986 56666664 3556789999999999988754 789999987532 222222
Q ss_pred cccccceEEEEECCCCCEEEEeeC------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGSS------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
.....-+.|+|||++++|++. |+.++||+.. |.++++-.--+ +.+.+.|-|-
T Consensus 354 ---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 354 ---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeeec
Confidence 123556789999999998874 7889999975 44443221111 5777777654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-09 Score=94.11 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=156.4
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCccee
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN 146 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 146 (347)
++..++.++.++.++.+|.... +....... ...+.+ ... .+..++.++.+|.+..||.++++.+.++........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDG-KELWRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCC-cEeeeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 3566778888888888887432 22211111 111211 111 245777788899999999999988776544322110
Q ss_pred ---EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----c---eEEEEEcC--CCCeEEEEecCCcEEEEeC
Q 019006 147 ---SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----Q---ITAVSFSD--ASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 147 ---~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 213 (347)
...+.-.+ ..++.+..++.+..+|.++++.+....... . ...+.-+| .+..+++++.+|.++.||.
T Consensus 180 ~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 180 LRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred ecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 00000112 356778888999999998887654322110 0 00000011 2567888889999999999
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 293 (347)
.+++....... .. ..... ..+..++.++.||.+..+|..+.+.. ........ ....+.. ..+..|++
T Consensus 259 ~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~----W~~~~~~~---~~~ssp~--i~g~~l~~ 325 (377)
T TIGR03300 259 RSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSEL----WKNDELKY---RQLTAPA--VVGGYLVV 325 (377)
T ss_pred CCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEE----EccccccC---CccccCE--EECCEEEE
Confidence 99987665542 11 12222 24678888889999999998754321 11111000 0111111 14679999
Q ss_pred eeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 294 GSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
++.+|.|+++|..+++++.+++.+...+...-...++ .|..++.||.|+.+
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999999999999999988766544322222333 47788999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-07 Score=79.28 Aligned_cols=269 Identities=13% Similarity=0.157 Sum_probs=166.9
Q ss_pred CccccEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEe---CcccceeEEEEcCCCCEEEEecCC-CeEEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTDGSQIISASPD-KTLRAW 127 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw 127 (347)
.+.+.++-|+|+|+++.|.++-.+ |.|--|.++.+...+..+. ....+-+.++.++++++++++... |.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 566778889999999998887654 6677777764322221111 112233789999999999998754 789999
Q ss_pred ECCC-Ccee--eeeeccCcc----------eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee----ecCCCCceEEE
Q 019006 128 DVET-GKQI--KKMAEHNSF----------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ----TFPDKYQITAV 190 (347)
Q Consensus 128 d~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~~~~v~~~ 190 (347)
-++. |... ..+..|... +....+.|.+..+++.--.--+|.+|++..++... .++.......+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 3221 112223222 44455556655444444444578899988655432 22344567889
Q ss_pred EEcCCCCeEEEEe-cCCcEEEEeCCCC-ceEEEecCC---------CCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCC
Q 019006 191 SFSDASDKIYTGG-IDNDVKVWDLRKG-EVSMTLQGH---------QDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPY 258 (347)
Q Consensus 191 ~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~---------~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~ 258 (347)
.|+|++++.++.. -+++|.+|..... .....++.+ ......|.++++|++|.++.. ...|.+|.+.+.
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999988766 5788999988763 222222221 234567889999999998754 347888888754
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEe--CCCceeeEEec-CCccCeeeEEEc
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWD--TTSRRILYKLP-GHTGSVNESVFH 327 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd--~~~~~~~~~~~-~h~~~v~~~~~~ 327 (347)
......+.....+. .......|+++|++|+++..++ .|.+|. ..+|++-.... .......+|.|.
T Consensus 277 ~g~L~~~~~~~teg----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEG----QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCC----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 33222222222211 1245667899999999988654 588884 45565432222 233445566654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=99.61 Aligned_cols=272 Identities=13% Similarity=0.178 Sum_probs=163.9
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEE----eccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLW----HVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..+.|.++.|-++...|+.+..+|.|.+. +... ........-...|.+++||||...|+.+..++++.+.+ .+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-cc
Confidence 34689999999999999999999999998 4322 12222233456899999999999999999999988875 33
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--------------eeecCCCCceEEEEEcCCCC
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--------------IQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~v~~~~~~~~~~ 197 (347)
.+.+.+...+.... +....++.+...+=.-|.-..++. ...+..+..-..++|-.||.
T Consensus 151 fd~i~E~~l~~~~~--------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 151 FDPISEVPLDSDDF--------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred ceEEEEeecCcccc--------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 44444332221110 001122222211111111000110 01111233567799999999
Q ss_pred eEEEEec---C---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEE
Q 019006 198 KIYTGGI---D---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 198 ~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
++++.+. . ..+|||+- .|....+-..-.+.-.+++|.|.|+++|+.-. ...|.+|.....+ ...+
T Consensus 223 yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-----hgeF 296 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-----HGEF 296 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-----eeeE
Confidence 9998764 2 46999985 46544443333333456899999999998764 3467777643211 1111
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce--eeEEecCC-ccCeeeEEEcCCCCE-EEEecCCCcEEe
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR--ILYKLPGH-TGSVNESVFHATEPV-IGSCSSDKQIYL 344 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h-~~~v~~~~~~~~~~~-l~s~s~D~~i~i 344 (347)
.-........+..+.|++|+..||.--.|. |.+|...+.. +.+.+... ...+..+.|||..++ |.....+|.+..
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 111111234688999999999999977665 9999877654 22333322 234556999998763 445555466544
Q ss_pred e
Q 019006 345 G 345 (347)
Q Consensus 345 ~ 345 (347)
.
T Consensus 376 ~ 376 (928)
T PF04762_consen 376 Y 376 (928)
T ss_pred E
Confidence 3
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-10 Score=90.70 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=132.8
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC-Cceee-
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET-GKQIK- 136 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~-~~~~~- 136 (347)
.++.|++.+..++++..+|.+.+-+.. ...+....+++|.-..+-..|+. +-+.+++||.|+.+..||++. ++.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 466788889899999999999844332 22223346789999999988875 446889999999999999983 33332
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeecCCCCceEEEEEcCCCC--eEEEEecCCcEEEEeC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASD--KIYTGGIDNDVKVWDL 213 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~ 213 (347)
..+.|...|.++..++..+.++++|+.|..|++||.|. ++++..-+..+.|..+..+|.-. .++++-.+| .+|-+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence 24567778888888888888999999999999999984 56666666667899999988643 233444444 556555
Q ss_pred CCC--c---eEEEecCCCCceeEEEECCCCCEEEEEc-CCCcEE-EE
Q 019006 214 RKG--E---VSMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLC-IW 253 (347)
Q Consensus 214 ~~~--~---~~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~-~w 253 (347)
..+ + .....+.|.+....-.|......++|++ .|+.++ +|
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 433 2 2233445666566666644445678765 455533 55
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-08 Score=99.05 Aligned_cols=242 Identities=14% Similarity=0.176 Sum_probs=156.1
Q ss_pred EEEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeC--c------------ccceeEEEEcCCCCEEEEec-CCCeE
Q 019006 61 YTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKG--H------------KNAILDLHWTTDGSQIISAS-PDKTL 124 (347)
Q Consensus 61 ~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~--h------------~~~v~~~~~~~~~~~l~s~~-~dg~i 124 (347)
..+++++. +.++++-...+.|.+|+..+... ..+.+ . -.....++++++++.|+.+. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35678764 56777777788899999865421 11111 1 12347889999888666554 56789
Q ss_pred EEEECCCCceeeeeecc-----------------CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-----
Q 019006 125 RAWDVETGKQIKKMAEH-----------------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----- 182 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----- 182 (347)
+++|..++. +..+... -.....+++.+.+..++++.+.+++|++||...+.......
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999987654 3333110 01123466666566788888889999999987654321100
Q ss_pred ----------CCCceEEEEEcCCCCeEE-EEecCCcEEEEeCCCCceEEEecC-------------C--------CCcee
Q 019006 183 ----------DKYQITAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQG-------------H--------QDMIT 230 (347)
Q Consensus 183 ----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-------------~--------~~~i~ 230 (347)
.-.....++++|+++.++ +-+.++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 012356789999988555 455678999999987653211100 0 01235
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc----------ccccceEEEEECCCCCEEEEeeCCCeE
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH----------NFEKNLLKCGWSPDGSKVTAGSSDRMV 300 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~g~~l~sgs~dg~i 300 (347)
+++++++|+.+++-..++.|++||.... . +..+.+... ..-.....++++++|+++++-+.++.|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg----~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATK----R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCC----e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 7899999998888889999999998632 1 112211100 001245678899999999999999999
Q ss_pred EEEeCCCcee
Q 019006 301 YIWDTTSRRI 310 (347)
Q Consensus 301 ~vwd~~~~~~ 310 (347)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-09 Score=93.40 Aligned_cols=188 Identities=19% Similarity=0.333 Sum_probs=139.4
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCe--eeEEEeCcccceeEEEEc--------------------CCCCEEEEecCCCeE
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCK--NFMVLKGHKNAILDLHWT--------------------TDGSQIISASPDKTL 124 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~--~~~~~~~h~~~v~~~~~~--------------------~~~~~l~s~~~dg~i 124 (347)
|...++|....||.+++|+...+.. .+.....-++..++..|. .+...++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999854321 111111111222333331 233567788889999
Q ss_pred EEEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEE
Q 019006 125 RAWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYT 201 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 201 (347)
.+|++..++....+. .|.+.|........ -..+.+++.|+.+..|+.+....+..... ...+.+++++||+..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999998877665 46667776654433 34688999999999999998887777654 456889999999999988
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC-----CCEEEEE-cCCCcEEEEeCCC
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD-----GSYLLTN-GMDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~-----~~~l~t~-~~d~~i~~wd~~~ 257 (347)
++ +.|++||+.+.+.+..+.+|.++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77 57999999999999999999999999999776 6666654 5566788887653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-09 Score=93.51 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=118.5
Q ss_pred ccccEEEEEECCCCCeE---EEeeCCC--cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CC----eEE
Q 019006 56 HQSAVYTMKFNPAGTVI---ASGSHDR--DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DK----TLR 125 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l---~s~~~d~--~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg----~i~ 125 (347)
....+.+-+|+|||+.+ ++...+| .|++.++.+... ..+...........|+|||++|+..+. +| .+.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 34456677999999742 2444444 466667754322 222333344556789999998886542 23 344
Q ss_pred EEECCCC--ceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEe--CCC-CCceeecC-CCCceEEEEEcCCCCe
Q 019006 126 AWDVETG--KQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWD--MRQ-RGAIQTFP-DKYQITAVSFSDASDK 198 (347)
Q Consensus 126 iwd~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~-~~~~~~~~-~~~~v~~~~~~~~~~~ 198 (347)
.|++..+ .....+... ........+++++..++++...+|...+|. +.. +.....+. ....+....|+|+++.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 4776642 122223222 223344577788776666666677656654 432 22222232 2235677899999998
Q ss_pred EEEEecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCC
Q 019006 199 IYTGGID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~ 257 (347)
++..+.+ ..|.+||+.+++...... ....+....|+|+|+.|+..+. ...|.++|+..
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 8765543 369999998886543322 2335678999999998875432 34678888764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=113.71 Aligned_cols=183 Identities=19% Similarity=0.345 Sum_probs=143.3
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
.+..+..++.. .+.++|+.||.+++|.-..++.+..+. ...+++.+.|+.+|+.+..+..||.+.+|... .+....
T Consensus 2210 ~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred ceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 34444444444 467899999999999987777665543 23678999999999999999999999999875 667778
Q ss_pred ecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 222 LQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.+.|.....++.|-. ..+++++ .++.+.+||.-.. +...++. ..| .....++++-|..++|++|+.+|
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-~~~s~v~--~~H----~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-PMNSLVH--TCH----DGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccC-cccceee--eec----CCCceEEEEcCcceEEEecCCcC
Confidence 888988888888865 5667765 4679999996521 1222222 333 45688999999999999999999
Q ss_pred eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 299 MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|++||++..+++..++. ++ ...++.+++..|.|+||++
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 999999999888877664 55 7789999999999999975
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6e-10 Score=90.71 Aligned_cols=243 Identities=20% Similarity=0.389 Sum_probs=155.1
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--Ce--eeEEEeCcc------------cceeEEEEcCCC--CEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CK--NFMVLKGHK------------NAILDLHWTTDG--SQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~--~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~ 118 (347)
..-|+++.|...|.+|++|...|.|.+|.-... |. -+..+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 457899999999999999999999999965321 11 122345553 357788887654 357777
Q ss_pred cCCCeEEEEECCCCc--e-------------------------eeeee----------------ccCcceeEeecCCCCC
Q 019006 119 SPDKTLRAWDVETGK--Q-------------------------IKKMA----------------EHNSFVNSCCPSRRGP 155 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~--~-------------------------~~~~~----------------~~~~~v~~~~~~~~~~ 155 (347)
..|++|++|-+.... . +..+. .|.-.++++.+..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999764320 0 00111 1222334444444432
Q ss_pred CEEEEEcCCCceEEEeCCCCC-c--ee-ecCCC-----CceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCce------E
Q 019006 156 PLVVSGSDDGTAKLWDMRQRG-A--IQ-TFPDK-----YQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEV------S 219 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~-~--~~-~~~~~-----~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------~ 219 (347)
.++ ...|-+|.+|++.--. . +. .-|+. .-|++..|+|... .+.-.+..|.|++-|+|.... .
T Consensus 186 -t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 -TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred -eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 333 4567889999876322 1 11 12332 2478889998754 455677889999999984321 1
Q ss_pred EE--e--------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-------c-c---c
Q 019006 220 MT--L--------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-------E-K---N 278 (347)
Q Consensus 220 ~~--~--------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-------~-~---~ 278 (347)
.. + .+-...|..+.|+++|+++++-+.- ++++||++.. ..++++++.|.... + + .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~---k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMA---KNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccc---cCCceeechHHHHHHHHHhhhhccceee
Confidence 11 1 1112457889999999999887654 8999999753 34556665443211 1 1 2
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
-..+.||-|.+.+++||..+..-+|..
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecCCcccccccccccceeeecc
Confidence 246788999999999998887777753
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-08 Score=89.50 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=155.5
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
.+..+++++.++.++.+|.... +......-......... .++..++.++.++.+..+|..+|+.+.+..........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 3678888889999999987432 22222221111111111 24678888889999999999999887665433221111
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE------EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT------AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 221 (347)
... ....++.++.++.+..+|.++++.+..+....... +.... +..++.+..++.+..+|.++++...+
T Consensus 141 p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 141 PLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 011 12356677889999999999888766554332211 11111 34678888899999999999986654
Q ss_pred ecCCCC-------ceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 222 LQGHQD-------MITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 222 ~~~~~~-------~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
...... .+..+.-+| .+..++.++.+|.+..+|..+.+. ...... .. ... ...++..|+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~----~W~~~~--~~----~~~--p~~~~~~vy 283 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV----LWKRDA--SS----YQG--PAVDDNRLY 283 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----EEeecc--CC----ccC--ceEeCCEEE
Confidence 321100 000011111 356788888899999999875321 111110 00 111 123577888
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++.||.++.+|..+++.+.+...-.. ....... .+..+..++.||.|+++|
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 889999999999999998876532221 1122122 355778888999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-08 Score=97.26 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=149.9
Q ss_pred EEEEcCC-CCEEEEecCCCeEEEEECCCCceeeeeeccC--------------cceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 105 DLHWTTD-GSQIISASPDKTLRAWDVETGKQIKKMAEHN--------------SFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 105 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
.+++++. ++.+++-..++.|+++|... ..+..+.... .....+++.+.+..++++-...+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5778764 55666767888999999764 3333332200 112334555544445666666788999
Q ss_pred EeCCCCCceeecCC------------------CCceEEEEEcCCCC-eEEEEecCCcEEEEeCCCCceEEEecC------
Q 019006 170 WDMRQRGAIQTFPD------------------KYQITAVSFSDASD-KIYTGGIDNDVKVWDLRKGEVSMTLQG------ 224 (347)
Q Consensus 170 wd~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~------ 224 (347)
+|..++. +.++.. -.....++++|++. .+++.+.++.|++||..++.... +.+
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcccc
Confidence 9986543 222210 01245789999544 45566678899999987764321 111
Q ss_pred ---C------CCceeEEEECCCCCEE-EEEcCCCcEEEEeCCCCCCcCceeE-----------EEecccc----ccccce
Q 019006 225 ---H------QDMITGMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVK-----------ILEGHQH----NFEKNL 279 (347)
Q Consensus 225 ---~------~~~i~~v~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~~----~~~~~~ 279 (347)
+ -.....|+++|++++| ++.+.++.|++||+..... ..+. .+..... ..-...
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 1234679999998855 4556678999999874321 0000 0000000 001124
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec-------------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-------------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++++++|..+++-+.++.|++||..++.+..... ++-.....++++++++++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 578899999998999999999999998876553221 1123577899999999999999999999998
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 887 ~ 887 (1057)
T PLN02919 887 L 887 (1057)
T ss_pred C
Confidence 5
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=88.99 Aligned_cols=245 Identities=17% Similarity=0.301 Sum_probs=164.1
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC-CCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV-ETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+..++||.+.|++...-|-..-+++.+.|.++|||-- +.++....+... +..+....... ....|+.|-..|++.-+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEE
Confidence 3456788888888777777778999999999999943 344433333221 22333333333 33467778888888877
Q ss_pred eCCCC----Cceee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc
Q 019006 171 DMRQR----GAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 171 d~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
.+... ...+. ..+...+..+.|+.....+++.+.|..+.---.+++.....+.- ...-+++.+.-. +...|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 65422 22222 23556789999998889999999887665444444432211100 000111111111 555666
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-eeEEecCCccCeeeE
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR-ILYKLPGHTGSVNES 324 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~ 324 (347)
..|.+..-.+.+. ....+..+.+| .+.+.+++|.|....|.+|..|..+.+||+.-+. ..+.+.+|...|..+
T Consensus 173 ~~gqvt~lr~~~~--~~~~i~~~~~h----~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 173 HSGQITMLKLEQN--GCQLITTFNGH----TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred cccceEEEEEeec--CCceEEEEcCc----ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 6676666555432 22344555555 3678999999999999999999999999987654 446788999999999
Q ss_pred EEcCCCCEEEEecCCCcEEeecC
Q 019006 325 VFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..-+.-+.+.+++.||.|.+|++
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEec
Confidence 99999999999999999999985
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-08 Score=85.72 Aligned_cols=275 Identities=11% Similarity=0.149 Sum_probs=171.0
Q ss_pred ccccEEEEEECCCCCeEEEeeCCC---------------cEEEEeccCCCeeeEEEeCcccc--ee-EEEEcCCCCEEEE
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDR---------------DIFLWHVHGDCKNFMVLKGHKNA--IL-DLHWTTDGSQIIS 117 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~---------------~v~~w~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s 117 (347)
....|..+.|+|++.+|.+-+... .+.+||+.+. .....+.+...+ .+ -+.|+-++.+++-
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhh
Confidence 346789999999999999876544 4889998653 333444444444 44 5778888877664
Q ss_pred ecCCCeEEEEECCCCce-eeeeec-cCcceeEeecCCC-CCCEEE-----EEcCCCceEEEeCCCCCceeecCC-CCceE
Q 019006 118 ASPDKTLRAWDVETGKQ-IKKMAE-HNSFVNSCCPSRR-GPPLVV-----SGSDDGTAKLWDMRQRGAIQTFPD-KYQIT 188 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~-~~~~~~-----s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~ 188 (347)
. ....++|+++ ++.. ...+.. ....+....+++. +...++ ..+.++++++|.+.....+....- +..-.
T Consensus 149 v-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred h-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 4 3356889986 3221 111111 1123344444443 122222 245677889998875554433221 11234
Q ss_pred EEEEcCCCCeEEEEe-----------cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeC
Q 019006 189 AVSFSDASDKIYTGG-----------IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDM 255 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~ 255 (347)
.+.|.+.++++++-- ....+++++++...+.... .-.++|..++|.|.++.+++.+ .+-.+.++|+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccc
Confidence 567788887765321 1245788888744444433 4578999999999988776655 6778999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCCCceeeE-EecCCccCeeeEEEcCCCC
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTTSRRILY-KLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~ 331 (347)
+. .....+.. ..-..+.|+|.+++++.++-| |.+-+||....-... .+.+-. ..-+.|+|+++
T Consensus 306 r~-----Nl~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~q 372 (561)
T COG5354 306 RG-----NLRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQ 372 (561)
T ss_pred cc-----ceEEecCC------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCce
Confidence 73 22222221 123355689999999987765 679999987765443 565433 34456999999
Q ss_pred EEEEec------CCCcEEeecC
Q 019006 332 VIGSCS------SDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s------~D~~i~i~~~ 347 (347)
++-+.- .|..|.|||+
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EEEecCCCcccccCcceEEEEe
Confidence 766443 4788999985
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-07 Score=80.14 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=140.9
Q ss_pred ECCCCCeEEEeeC----------CCcEEEEeccCCCeeeEEEeCc-------ccceeEEEEcCCCCEEEEecC--CCeEE
Q 019006 65 FNPAGTVIASGSH----------DRDIFLWHVHGDCKNFMVLKGH-------KNAILDLHWTTDGSQIISASP--DKTLR 125 (347)
Q Consensus 65 ~~~~~~~l~s~~~----------d~~v~~w~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~ 125 (347)
++|+|+.|.++.. +..|.+||.... +....+.-- ...-..++++|||++|+.... +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 8999988776655 788999998643 333333211 112347889999999987763 68899
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-----cCC-CCce-EEEEEcC-CCC
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-----FPD-KYQI-TAVSFSD-ASD 197 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-----~~~-~~~v-~~~~~~~-~~~ 197 (347)
+.|+.+++.+.++....... +........+ .-+.||......+........ +.. +..+ ..-.|.+ ++.
T Consensus 132 VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYH--IFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EEECCCCcEEEEEeCCCCcE--EEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99999999888776432211 1111111111 223445444433322111110 000 0000 0003344 677
Q ss_pred eEEEEecCCcEEEEeCCCCce-----EEEec-------CCCCceeEEEECCCCCEEEEEc----------CCCcEEEEeC
Q 019006 198 KIYTGGIDNDVKVWDLRKGEV-----SMTLQ-------GHQDMITGMSLSPDGSYLLTNG----------MDCKLCIWDM 255 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~-----~~~~~-------~~~~~i~~v~~~~~~~~l~t~~----------~d~~i~~wd~ 255 (347)
.++.... |.|++.|+..... ...+. .....+.-+++++++++++... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 7776666 9999999644321 11111 1122334499999999888742 1257999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEee-CCCeEEEEeCCCceeeEEe
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGS-SDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 314 (347)
... +.+..+.. ...+..++++|||+ +|++.. .++.|.++|..+++.+.++
T Consensus 287 ~t~----kvi~~i~v-----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG----KRLRKIEL-----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC----eEEEEEeC-----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 743 33333321 23678899999999 887666 5788999999999988877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=101.61 Aligned_cols=206 Identities=23% Similarity=0.398 Sum_probs=147.8
Q ss_pred eEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+.+-||..+|+.+.|+|.. ..||+++.|-.+..|++.....++.....-..+...++|+--...+...+....|++||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 5678999999999999965 689999999999999997766666666555566788999864445555667778999999
Q ss_pred CCC-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeecCCCCceEEEEEcCCCCeEEEEecC-
Q 019006 130 ETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASDKIYTGGID- 205 (347)
Q Consensus 130 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 205 (347)
..| ..+..++.|...++.+.+.......+++.+.|+++++||..... .....+.++.+..-.+.|-+.-.+.--..
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 765 45667777877888777766555678899999999999976432 23344555666666666655433321111
Q ss_pred -CcEEE---------EeCCC-CceEEEecCCCCceeEEEECCCCC----------EEEEEcCCCcEEEEeCC
Q 019006 206 -NDVKV---------WDLRK-GEVSMTLQGHQDMITGMSLSPDGS----------YLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 206 -g~i~i---------wd~~~-~~~~~~~~~~~~~i~~v~~~~~~~----------~l~t~~~d~~i~~wd~~ 256 (347)
+.+-+ |+..+ .+.++++.||.+.|..+-|...+. .|+|-+.|.++++|-+.
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 13333 33322 356789999999887776654322 69999999999999764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-08 Score=79.26 Aligned_cols=246 Identities=15% Similarity=0.120 Sum_probs=151.1
Q ss_pred EEEEECCC-----CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce
Q 019006 61 YTMKFNPA-----GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 61 ~~v~~~~~-----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
..|.|-|- -..||.||.-|...+|.+..+.........|...|+-+.=.. ....+..++.|.++++.+++-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34566663 358999999999999998755444444555554443221111 123467788999999998765433
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--ee--ecCCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQ--TFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
-.......-.+..+..+++ +.+.++.+....|..|.+..... .. ..+....-.+..|+.....+|++..||++.|
T Consensus 151 ~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred cceeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 2222111112455555554 45777888888999998864432 22 2233344567788888899999999999999
Q ss_pred EeCCCCceEE-----EecCCCCceeEEEECCCCC--EEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-ccceEEE
Q 019006 211 WDLRKGEVSM-----TLQGHQDMITGMSLSPDGS--YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-EKNLLKC 282 (347)
Q Consensus 211 wd~~~~~~~~-----~~~~~~~~i~~v~~~~~~~--~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (347)
||+|.....+ +-..|++.+..+.|++.|. +|+-.-.-+.+.+-|+|++..-.. +.......... ...+...
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccccccccccccccc
Confidence 9998754333 2345889999999998654 344444456899999997543221 11111110011 1235666
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
.|+.++..+.+.+.+ .+.=|+..++.
T Consensus 309 ~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 309 NFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccCCCcccccccch-hhheeeccccc
Confidence 677777777666655 45556555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=93.24 Aligned_cols=236 Identities=14% Similarity=0.207 Sum_probs=162.3
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---------------eeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGK---------------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
....++.|+.+..+|++||.||.+++..+.+.. ..+++.+|+..|.-+.++...+ .+.+...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 456889999999999999999999998765421 1234567888888787776654 567888999
Q ss_pred ceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE-EEecCCCCceeEEEECCCCCEE
Q 019006 166 TAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l 241 (347)
.|.+|-+-.+.-...+ ..+..|.+++|+.+|..+.....||.|.+=.++..+.- ..+++. ....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHH
Confidence 9999998877765554 23567899999999999999999998877655433211 122221 23467899999988
Q ss_pred EEEcCCCcEEEEeCCCCC---CcCceeEEEeccccccccceEEEEE--------CCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 242 LTNGMDCKLCIWDMRPYA---PQNRCVKILEGHQHNFEKNLLKCGW--------SPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
+-+-.+|.+.++|....- ....|.-...+...++...+..+.| -||...|+.+-..|.+.+-.-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 888888999999964210 1111211122222222223444444 36889999999999988875544322
Q ss_pred eEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 311 LYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 311 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
-..+. -...|....|+++|..||.+|.|.
T Consensus 252 Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEe-cccEeecceecCCCcEEEEccCcc
Confidence 11221 225688999999999999998653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-07 Score=90.92 Aligned_cols=279 Identities=15% Similarity=0.276 Sum_probs=165.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEecc--------------CCCeee--------EEEeC----------------
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVH--------------GDCKNF--------MVLKG---------------- 98 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~--------------~~~~~~--------~~~~~---------------- 98 (347)
..+|.+++||||+.+||....++++.+-+.+ +..+.. ..+.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 5689999999999999999999998875421 000000 00100
Q ss_pred --------cccceeEEEEcCCCCEEEEecC---C---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC-
Q 019006 99 --------HKNAILDLHWTTDGSQIISASP---D---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD- 163 (347)
Q Consensus 99 --------h~~~v~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~- 163 (347)
+.+.-..++|-.||.++|+.+. . ..+|||+-+ |........-.+.-..++|-|.+ .++++...
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~ 277 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRL 277 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEc
Confidence 2234567889999999998764 2 579999854 55433333223333345666665 46655432
Q ss_pred --CCceEEEeCCCCCceee----c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc--eEEEecCC-CCceeEEE
Q 019006 164 --DGTAKLWDMRQRGAIQT----F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--VSMTLQGH-QDMITGMS 233 (347)
Q Consensus 164 --d~~i~iwd~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~-~~~i~~v~ 233 (347)
...|.+|.-. |-.... + +....+..+.|++++..|+....|. |.+|-..+.. ...++.-. ...+..+.
T Consensus 278 ~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 3455566532 222112 2 2345789999999999999877655 9999887764 22333221 23345589
Q ss_pred ECCCCC-EEEEEcCCCcEEEEeCC----CCC--C--cCceeEEEec-------------------cccccccceEEEEEC
Q 019006 234 LSPDGS-YLLTNGMDCKLCIWDMR----PYA--P--QNRCVKILEG-------------------HQHNFEKNLLKCGWS 285 (347)
Q Consensus 234 ~~~~~~-~l~t~~~d~~i~~wd~~----~~~--~--~~~~~~~~~~-------------------~~~~~~~~~~~~~~s 285 (347)
|+|... .|.....+|.+..+++. ... + ....+..+.+ ....+...+..++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 999643 45555555666554431 100 0 0001111111 111234678899999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCcee--------eEEecC----------CccCeeeEEEcCCCCEEEEecCC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRI--------LYKLPG----------HTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~--------~~~~~~----------h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+++..+++-..||.|.+|....+.. ...+.. -...+..++|..+..+++..+.+
T Consensus 436 ~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 436 PSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 9999999999999999998543221 112211 13456888888888776666654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-07 Score=80.33 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=123.8
Q ss_pred ceeEEEEcCCCCE-EEEecC---CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCC
Q 019006 102 AILDLHWTTDGSQ-IISASP---DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQR 175 (347)
Q Consensus 102 ~v~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~ 175 (347)
....-.|+|||+. ++..+. +..|.++|+.+++... +...........+++++..++++.+.++ .|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999985 554443 3568889998876533 2223333334557788777777665554 5667787766
Q ss_pred CceeecCCCCceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-----
Q 019006 176 GAIQTFPDKYQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD----- 247 (347)
Q Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d----- 247 (347)
................|+|+++.++..+. .+ .|+++|+.+++....... ... ...|+|+|++++-.+..
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCccc
Confidence 54332223322345679999997776553 33 588889987765332221 111 24899999988766543
Q ss_pred ----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCCCceeeEEecCCccC
Q 019006 248 ----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTTSRRILYKLPGHTGS 320 (347)
Q Consensus 248 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~~~~~~~~~~~h~~~ 320 (347)
..|.+.|+.... .+.+.... ......|+|||+.|+..+.+ ..+.+.++.. ...++++...+.
T Consensus 345 ~~~~~~I~v~d~~~g~-----~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~ 413 (419)
T PRK04043 345 GKNTFNLYLISTNSDY-----IRRLTANG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGK 413 (419)
T ss_pred CCCCcEEEEEECCCCC-----eEECCCCC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCc
Confidence 256777765322 12222211 11246799999988765543 2466777754 333455544455
Q ss_pred eeeE
Q 019006 321 VNES 324 (347)
Q Consensus 321 v~~~ 324 (347)
+..-
T Consensus 414 ~~~p 417 (419)
T PRK04043 414 IQSI 417 (419)
T ss_pred cCCC
Confidence 5443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-08 Score=87.26 Aligned_cols=206 Identities=18% Similarity=0.177 Sum_probs=135.1
Q ss_pred eeEecCccccEEEEEECCCC------------CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC---CC-C
Q 019006 50 IMLLTGHQSAVYTMKFNPAG------------TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT---DG-S 113 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~------------~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~ 113 (347)
+..++-|+..|+.+.|.|.. .+||++.-.|.|.+||... +.....+..|.+++.+++|-+ +. .
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-hhhhhhhcCCCcchhheeeeeccCcchh
Confidence 34567799999999998742 2688899999999999853 233345678889999999976 33 4
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC----CCceeec---CC---
Q 019006 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ----RGAIQTF---PD--- 183 (347)
Q Consensus 114 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~~---~~--- 183 (347)
.|+.-....++.+|+..+|+.+.+..-......++.+.|-+...+..-+..|.+.+-+.-. ..+.+.+ ..
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 5666667789999999999988766544444444555554444444444555555554311 0111110 00
Q ss_pred -----------------CC------ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCC--
Q 019006 184 -----------------KY------QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDG-- 238 (347)
Q Consensus 184 -----------------~~------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~-- 238 (347)
.. -...++|+|.-+.++-...-..+.++|++-..+.....-..+.+.-+.+-|++
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc
Confidence 00 02235678887777777777889999998766666554444444555666654
Q ss_pred CEEEEEcCCCcEEEEeCC
Q 019006 239 SYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~ 256 (347)
..|++...||.+.+|-.+
T Consensus 287 d~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 287 DALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceEEEEecCCeEEEEEee
Confidence 578889999999999544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-06 Score=73.77 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=137.6
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-
Q 019006 105 DLHWTT-DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP- 182 (347)
Q Consensus 105 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~- 182 (347)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+.....+..++ .+.. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEeec
Confidence 467887 66666676678999999988775432 22222 33444442334444 4444 445666988765432221
Q ss_pred -----CCCceEEEEEcCCCCeEEEEecC--------CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE-EEcCCC
Q 019006 183 -----DKYQITAVSFSDASDKIYTGGID--------NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL-TNGMDC 248 (347)
Q Consensus 183 -----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-t~~~d~ 248 (347)
.....+.++++++++..++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 23468899999999866655433 457777776 54433332 234578999999998775 566778
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc-
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH- 327 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~- 327 (347)
.|..+++............+.... ......-.+++..+|++.++....+.|.++|.. ++++..+.-....++.++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred eeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 899998863222111111121111 111236678899999998888889999999988 88887776555689999994
Q ss_pred CCCC-EEEEe
Q 019006 328 ATEP-VIGSC 336 (347)
Q Consensus 328 ~~~~-~l~s~ 336 (347)
++.. +++|.
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 5544 44444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=82.73 Aligned_cols=254 Identities=17% Similarity=0.283 Sum_probs=153.1
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCee--eEEEeCcccceeEEEEcCCCC--EEEE-----ecCCCeEEEEECCCC
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--FMVLKGHKNAILDLHWTTDGS--QIIS-----ASPDKTLRAWDVETG 132 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s-----~~~dg~i~iwd~~~~ 132 (347)
-+.|+-+..++|=- -...++++++.++... +..++ ...|....|+|.++ .|+. .+.++++++|.+-.+
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 44555555444322 2235777775332211 11111 25678888998643 3443 467789999998755
Q ss_pred ceeee--eeccCcceeEeecCCCCCCEEEEE----------cCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 133 KQIKK--MAEHNSFVNSCCPSRRGPPLVVSG----------SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 133 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
+.+.. +....+ ..+.+...+..+++-. -....+.+++++....-........|..++|.|.++.++
T Consensus 213 s~l~tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 213 SVLVTKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred CeeeeeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCcee
Confidence 44322 221111 1223333333332211 122457788887554333334467899999999988776
Q ss_pred EE--ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 201 TG--GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 201 ~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+. -..-.+.++|++.. ....+.. ..=+.+.|+|.+++++.+|-| |.+-+||... ...++..+.+
T Consensus 291 vi~g~~pa~~s~~~lr~N-l~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~~----- 359 (561)
T COG5354 291 VISGYMPASVSVFDLRGN-LRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFNG----- 359 (561)
T ss_pred EEecccccceeecccccc-eEEecCC--cccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEeec-----
Confidence 54 47788999999866 4444432 334668899999999998866 5789998652 1222222322
Q ss_pred ccceEEEEECCCCCEEEEee------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 276 EKNLLKCGWSPDGSKVTAGS------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.....|.|+||++++.+.. .|..|.|||+.....- +.+.+.|-|.++...+.|.+.
T Consensus 360 -~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 360 -LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 2355678999999988764 3788999997643321 567778888887776666654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-10 Score=91.25 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=120.6
Q ss_pred EEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-----ceEEEecCCCCceeEEE
Q 019006 159 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-----EVSMTLQGHQDMITGMS 233 (347)
Q Consensus 159 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~v~ 233 (347)
++.+.+..+.+-|+.++- -+.+..+..|.++.|...++.++.|..+|.|..+|+|.. .+...+ -|.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccc-ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhh
Confidence 445566777888887653 345556678888889888999999999999999999864 334444 3778888887
Q ss_pred ECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 234 LSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 234 ~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
.-. ++++|++.+.+|+|++||+|-.+. ...+..+++|..... -.-+-..+....++++++|.+.++|.++++.++.
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~-~~~V~qYeGHvN~~a--~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKC-KKSVMQYEGHVNLSA--YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhc-ccceeeeeccccccc--ccccccccccceEEEccCeeEEEEEecccCceee
Confidence 655 788999999999999999985322 223667777754322 2223346778889999999999999999999998
Q ss_pred EecCC----ccCeeeEEEc
Q 019006 313 KLPGH----TGSVNESVFH 327 (347)
Q Consensus 313 ~~~~h----~~~v~~~~~~ 327 (347)
+++-. +..+..++|.
T Consensus 383 tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 383 TIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCCCCccccccccceehh
Confidence 77643 2234556654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-08 Score=81.51 Aligned_cols=240 Identities=17% Similarity=0.327 Sum_probs=151.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----eeeeeeccCc------------ceeEeec-CCCCCCEEEEE
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGK-----QIKKMAEHNS------------FVNSCCP-SRRGPPLVVSG 161 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~-~~~~~~~~~s~ 161 (347)
.+.|+++.|...|.+|++|...|.|.+|.-+..+ -...++.|.. .+..+.+ .+.+...++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999998654322 1112333321 1222322 23334456667
Q ss_pred cCCCceEEEeCCCCC-------------------ceee-----------------------c--CCCCceEEEEEcCCCC
Q 019006 162 SDDGTAKLWDMRQRG-------------------AIQT-----------------------F--PDKYQITAVSFSDASD 197 (347)
Q Consensus 162 ~~d~~i~iwd~~~~~-------------------~~~~-----------------------~--~~~~~v~~~~~~~~~~ 197 (347)
+.|.+|++|-+..+. ++.. + .|...++++.+..+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875431 0000 0 1223477888888877
Q ss_pred eEEEEecCCcEEEEeCCCCce---EEEecCCC-----CceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 198 KIYTGGIDNDVKVWDLRKGEV---SMTLQGHQ-----DMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
.++++ .|-.|.+|++..... +..++.|. ..|++..|+|. .+.+.=.+..|.|++-|+|+...-....+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77654 456799999865432 23344443 35888999996 4455556678999999998432111111111
Q ss_pred e----cccc----ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEEecCCc------------cCe---eeE
Q 019006 269 E----GHQH----NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYKLPGHT------------GSV---NES 324 (347)
Q Consensus 269 ~----~~~~----~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~------------~~v---~~~ 324 (347)
. +... .....+..+.|++.|+++++-+.- +|++||... +.++.+++-|. ..| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1 1111 122456778899999999987764 899999875 45677775553 233 467
Q ss_pred EEcCCCCEEEEecCCCc
Q 019006 325 VFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~ 341 (347)
.|+.+.+.+.+||....
T Consensus 344 sfSgd~~~v~sgsy~NN 360 (460)
T COG5170 344 SFSGDDKHVLSGSYSNN 360 (460)
T ss_pred EecCCcccccccccccc
Confidence 78888888888876544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-07 Score=73.28 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=123.6
Q ss_pred EEECCCCCeEEEeeCCCcEEEEeccCCCeee-EEE---eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 63 MKFNPAGTVIASGSHDRDIFLWHVHGDCKNF-MVL---KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 63 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
++.+.+|++||.- .|..|.+=....+.... ... +.....=..++||||+..||.+...|+|+++|+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4567788888754 45555554433221111 111 1122234679999999999999999999999987533 3333
Q ss_pred eccC-------cceeEeecCCCC-----CCEEEEEcCCCceEEEeCCCC--C---ceeecC----CCCceEEEEEcCCCC
Q 019006 139 AEHN-------SFVNSCCPSRRG-----PPLVVSGSDDGTAKLWDMRQR--G---AIQTFP----DKYQITAVSFSDASD 197 (347)
Q Consensus 139 ~~~~-------~~v~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~~--~---~~~~~~----~~~~v~~~~~~~~~~ 197 (347)
.... ..+..+.+.... ...|+.-..+|.++-|-+..+ + ....+. ....|+++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2211 122222222211 223455567777777664221 1 111221 245799999999989
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEE--EEEcCCCc------EEEEeCCCCCCcCceeEEEe
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYL--LTNGMDCK------LCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l--~t~~~d~~------i~~wd~~~~~~~~~~~~~~~ 269 (347)
.|++|+.... ..+. -.+...-+++-..-.+..+. ++...|+. ..+|.+-. .+.+.
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-------~~~fs 223 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-------FKFFS 223 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc-------eeeee
Confidence 8888775432 0000 00001111111111111111 11121211 12222211 01111
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
. .....+.+..+..||||.+||+...+|.|.+|++.+-++..+..
T Consensus 224 ~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 224 R-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred c-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1 11124578999999999999999999999999998877766544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-07 Score=77.24 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEEeCCCCCceeecCCCCceEE
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLWDMRQRGAIQTFPDKYQITA 189 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~ 189 (347)
+|++++..|. |+..|.+...+..++ + .+...|.-....... +-++.|..|| .+-++|.+++......+.-..|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence 6888888875 667777665554332 1 233334433333332 2467788888 899999988776666666778999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC----cEEEEeCCCCCCcCcee
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC----KLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~ 265 (347)
+..+++|++++++.....|-++|+.++.....-+...+.|+.+.|||+++++|=+--+| .|+++|+... +..
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----Kiy 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----KIY 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----eEE
Confidence 99999999999999999999999999987766666678899999999999998765544 7899998632 111
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEee
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
...... ..-.+-+|.|||++|.--|
T Consensus 483 ~vTT~t-----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTTPT-----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCc-----ccccCcccCCCCcEEEEEe
Confidence 111111 1223556888888876543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-06 Score=71.31 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=118.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCC----C
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDK----Y 185 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~----~ 185 (347)
++.++++++.++.+..||..+|+.+..+......... +... ...++.++.++.+..+|.++++.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eeec-ccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 5677888889999999999999988776653221111 1111 234566668889999999998877663 211 1
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCc----------e-eEEEECCCCCEEEEEcCCCc-EEEE
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM----------I-TGMSLSPDGSYLLTNGMDCK-LCIW 253 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~v~~~~~~~~l~t~~~d~~-i~~w 253 (347)
..........+..++++..++.|..+|+++|+.+......... + ..+.+. ++ .++.++.++. +.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~- 188 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV- 188 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-
Confidence 1122222223778888888999999999999988777653322 1 222332 34 7777777775 555
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
|+...+ ..-... .. .... ....++..|+.++.++.|+.||+.+++.+.+
T Consensus 189 d~~tg~----~~w~~~--~~----~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 189 DLATGE----KLWSKP--IS----GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTTE----EEEEEC--SS-----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ECCCCC----EEEEec--CC----CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 887532 111111 11 1111 1346788888888999999999999998764
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-08 Score=84.21 Aligned_cols=255 Identities=16% Similarity=0.159 Sum_probs=168.2
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-CCee-eEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-DCKN-FMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 131 (347)
-|.+.|+.+.- ...+++.+++.||.++.|.... .... ...+..|-..|.+++.+-++..+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 47777777653 3567899999999999997643 1111 2345678888899999999999999777 99999999987
Q ss_pred Cceeeeeec--cCcceeEeecCCCC---CCEEEEEcCCCceEEEeCCCCCc-eeec--CCCCceEEEEEcCCCCeEEEEe
Q 019006 132 GKQIKKMAE--HNSFVNSCCPSRRG---PPLVVSGSDDGTAKLWDMRQRGA-IQTF--PDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 132 ~~~~~~~~~--~~~~v~~~~~~~~~---~~~~~s~~~d~~i~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
.....-+.. -+..+. +....+ ..+.++.-.++.+.++|-....+ ...+ -+-.+|.++.+.+.+..+.+..
T Consensus 86 ~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 655432222 122221 111121 12344555789999999775442 2222 2446899999999999999999
Q ss_pred cCCcEEEEeCCC------CceEEEec---------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc-----
Q 019006 204 IDNDVKVWDLRK------GEVSMTLQ---------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR----- 263 (347)
Q Consensus 204 ~dg~i~iwd~~~------~~~~~~~~---------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~----- 263 (347)
..|.|.-|.... .+....++ -.+....++.|+|++..+.+-+.|..|++++++.......
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999998762 11111221 1234578899999999999999999999998864321100
Q ss_pred -----eeEEEeccc---------------cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 264 -----CVKILEGHQ---------------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 264 -----~~~~~~~~~---------------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
..+...+.. ..-......+.|...|++|+-|+-=| |+|.++.++.+...
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 000000000 00011234567899999999998775 88898888776543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-10 Score=100.99 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=154.4
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-ceEEE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-TAKLW 170 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-~i~iw 170 (347)
....+..|....++++|+.+.++|+.|+..|.|+++++.+|........|++.+.-+.++.++..++.+.+... -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 34556778889999999999999999999999999999999998888999999998888888776666665554 57789
Q ss_pred eCCC-CCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC----CCCceeEEEECCCCCEEEEEc
Q 019006 171 DMRQ-RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG----HQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 171 d~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~~~~~~l~t~~ 245 (347)
++.. ++..+++. .-.++.|+.....-+.|+......+||+.++....++.. .+-.-+...|+|....++-
T Consensus 1173 ~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred ccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 9864 33333333 345678887766667777777899999999876555321 1112266789998877664
Q ss_pred CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEE
Q 019006 246 MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 325 (347)
|| .+||+|..+ .+..+.. +. .-..-.|+|.|..++.-+. |||+++.+++...+.- .-..|.
T Consensus 1248 -dG--vLWDvR~~~----aIh~FD~----ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L--dqc~Vt 1308 (1516)
T KOG1832|consen 1248 -DG--VLWDVRIPE----AIHRFDQ----FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL--DQCAVT 1308 (1516)
T ss_pred -Cc--eeeeeccHH----HHhhhhh----he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCccc--cceEEE
Confidence 44 389998431 1111111 11 1223458999998887764 8999998877655432 235667
Q ss_pred EcCCCCEEE
Q 019006 326 FHATEPVIG 334 (347)
Q Consensus 326 ~~~~~~~l~ 334 (347)
|+..|..|.
T Consensus 1309 FNstG~VmY 1317 (1516)
T KOG1832|consen 1309 FNSTGDVMY 1317 (1516)
T ss_pred eccCccchh
Confidence 888776553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-07 Score=75.09 Aligned_cols=217 Identities=19% Similarity=0.177 Sum_probs=129.8
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEe-ecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSC-CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
+|+|..||..+++.+.........-... ..... ...+++++.++.+..||..+++.+..+.....+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6889999999999887775421111111 11112 2456677899999999999888776554332211111 2235677
Q ss_pred EEEecCCcEEEEeCCCCceEEEe-cCCC---CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTL-QGHQ---DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
++++.++.++.+|..+|+...+. .... ..........++..++.+..++.|..+|.++. +.+..........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG----~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG----KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT----EEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC----cEEEEeecCCCCC
Confidence 77888889999999999988773 3221 11122223334788888888999999998753 3333333221111
Q ss_pred cc------ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 276 EK------NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 276 ~~------~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.. ....-....++ .+..++.++.+.-+|..+++.+.+.+ ...+..+ ....+..|..++.|+.|+.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 11 11122222344 77777777754444999999776544 2223332 4466667777779999999874
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-08 Score=83.21 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=96.3
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCc----eeecCCCCceEEEEEcCCCCeEEEEecCCc---EEEEeCCCCceEEEecCCC
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGA----IQTFPDKYQITAVSFSDASDKIYTGGIDND---VKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~ 226 (347)
...+++.+..+....+++.+.... ..........+++.+..+......+..-|. +.+|....+ ....+-+|-
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGhv 151 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGHV 151 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhhh
Confidence 345677777777766776654332 222222233344555445555555444444 444444433 334556899
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.++.++|+||+++++++..|..|++-.... ...+..+ ...+..-|..++.-+ +..|++||.|++|++||+.
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa----~f~Iesf---clGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA----TFVIESF---CLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc----ccchhhh---ccccHhheeeeeecc-CceeeecCCCCcEEEEecc
Confidence 9999999999999999999999999876431 1111111 112234566666655 4569999999999999999
Q ss_pred CceeeEEe
Q 019006 307 SRRILYKL 314 (347)
Q Consensus 307 ~~~~~~~~ 314 (347)
+++.+..+
T Consensus 224 sgk~L~t~ 231 (390)
T KOG3914|consen 224 SGKLLDTC 231 (390)
T ss_pred cCCccccc
Confidence 99887544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=60.67 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.8
Q ss_pred ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++++..+.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-08 Score=77.95 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEecc-----------CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVH-----------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
++.+.|.. ...|+++..++.+...... .....+..+..|..+-..-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55666543 4456677666665554432 11122333333433322222333467899999999999998
Q ss_pred CCCCceee-eeec-cCcceeEeecCCCCCCEEEEEcCCC------ceEEEeCCCCCceee-cCCCCceEEEEEcCCCC-e
Q 019006 129 VETGKQIK-KMAE-HNSFVNSCCPSRRGPPLVVSGSDDG------TAKLWDMRQRGAIQT-FPDKYQITAVSFSDASD-K 198 (347)
Q Consensus 129 ~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~------~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~ 198 (347)
.+....+. ++.. +.+.. +.+.... .+++.+ ..-| ..+.|+++..+.... ......|.+++-+|..+ .
T Consensus 118 ~~~~~~~~~~i~~~~~~~a-s~~~~~~-~~~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSA-SRKICRH-GNSILS-GGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHL 194 (319)
T ss_pred chHHHhhhhhccccccccc-ccceeec-ccEEec-CCcceEeeccceeeecccccccccccccccccchhhhCCcccccE
Confidence 76521111 1100 11100 0111111 122322 2223 334455443322111 11223488899998766 4
Q ss_pred EEEEecCCcEEEEeCCCCceE-EEecCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCC
Q 019006 199 IYTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~ 256 (347)
+++|+.||.+-+||.|..... ..+..|+..|+.+-|+|. +..|+++++||.+..||-.
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 567889999999999977433 346789999999999994 6789999999999999964
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=83.87 Aligned_cols=148 Identities=22% Similarity=0.382 Sum_probs=107.8
Q ss_pred EEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-----Cce
Q 019006 106 LHWTTD--GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-----GAI 178 (347)
Q Consensus 106 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-----~~~ 178 (347)
++|+-+ +-. ++.+.+-.+-+-|++++-. ..|. ..+.|.+..+... .++++.|..+|.|..+|++.+ .+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcce
Confidence 456542 223 5667777788888887643 2222 3334444444433 368899999999999999865 345
Q ss_pred eecCCCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCCce---EEEecCCCCcee--EEEECCCCCEEEEEcCCCcEEE
Q 019006 179 QTFPDKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMIT--GMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~--~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
+.+-|...++++..-. ++++|++.+.+|+|++||+|.-++ ++++.+|-..-. -+-+.+.+..++++|.|.-.+|
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 6677888888887765 678999999999999999998777 888899854322 2345677789999999999999
Q ss_pred EeCCC
Q 019006 253 WDMRP 257 (347)
Q Consensus 253 wd~~~ 257 (347)
|.++.
T Consensus 373 Wsl~~ 377 (425)
T KOG2695|consen 373 WSLDS 377 (425)
T ss_pred Eeccc
Confidence 99884
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-06 Score=75.37 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=149.5
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCccee-
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN- 146 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~- 146 (347)
+..++.++.++.++.+|.... +.....+.. ..+.+ -.. .+..++.+..++.+..+|.++|+.+.+.........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-EVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-CCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 345667778888888887432 222211111 11111 011 245677788899999999999998876653211100
Q ss_pred --EeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----c---eEEEEEcC--CCCeEEEEecCCcEEEEeCC
Q 019006 147 --SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----Q---ITAVSFSD--ASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 147 --~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 214 (347)
...+.-.+ ..++.++.++.+..+|..+++.....+... . ...+..+| .+..++.++.+|.++.+|..
T Consensus 196 ~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 00010011 246667888999999988877654432110 0 01111122 25677888889999999999
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 294 (347)
+++...+... .....+.. .+..++.++.++.+..+|..+.+...+ ...... ....+... .+.+|+.+
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~----~~~~~~---~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS----QSDLLH---RLLTAPVL--YNGYLVVG 341 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc----ccccCC---CcccCCEE--ECCEEEEE
Confidence 9987655432 11112222 456777888899999999865432111 100000 00111111 25678899
Q ss_pred eCCCeEEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEEEecCCCcEEeec
Q 019006 295 SSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 295 s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.||.|+++|..+++.+.+.+-....+. ...+ .+..|..++.||.++.++
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 9999999999999999887754333332 2222 244677789999998875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-07 Score=81.30 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=169.2
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC-----------CCCEEEEEcCCCceEEEe
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR-----------GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~s~~~d~~i~iwd 171 (347)
-.++.|+|.| .|+-|+ ...|.+-|..+.+.++.+..|...|..+.+.+. ...+++++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4677899877 455554 457888899888889999999988888776542 224678888899999999
Q ss_pred CCCCCceeecCCC-CceEEEEEcC---CC-CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC-CCCEEEEEc
Q 019006 172 MRQRGAIQTFPDK-YQITAVSFSD---AS-DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP-DGSYLLTNG 245 (347)
Q Consensus 172 ~~~~~~~~~~~~~-~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~ 245 (347)
...+..+..+.+. ..+..++|-+ +. ..+++-....++.+|+..+|+.......-.....++.+.| +.+.+..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9888776666543 4566666643 34 4666777778999999999998877665556677789888 556666667
Q ss_pred CCCcEEEEeCCCCCCcC---ceeEEEecccc-----------c----------cccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 246 MDCKLCIWDMRPYAPQN---RCVKILEGHQH-----------N----------FEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~~---~~~~~~~~~~~-----------~----------~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
..|.+.+-+.-..++.. +.++.-..|.. + +.-.+...+|+|.-+-++-...-..++
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 77777777654322221 22222222211 0 001123457899887777777788999
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCC--CEEEEecCCCcEEee
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATE--PVIGSCSSDKQIYLG 345 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~i~ 345 (347)
++|++-..++...+-..+.+.-+.+-|+. ..|.+.=.||.+.+|
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 99999999988877666666666666664 588888899998887
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=88.53 Aligned_cols=210 Identities=18% Similarity=0.274 Sum_probs=141.7
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC-------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG-------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~ 166 (347)
..+.||...|..++--.+.+-+++++.|++|++|.+... .+..++..|...+.++.+..+.. .+ ++.|+-
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~ScD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASCDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eeccCc
Confidence 356789999988877667788999999999999998642 13345567888888776654432 23 467899
Q ss_pred eEEEeCCCCCceeec---CCCCceEEEEEcC--CCCeEEEE-ecCCcEEEEeCCCCceEEEec-----CCCCceeEEEEC
Q 019006 167 AKLWDMRQRGAIQTF---PDKYQITAVSFSD--ASDKIYTG-GIDNDVKVWDLRKGEVSMTLQ-----GHQDMITGMSLS 235 (347)
Q Consensus 167 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~ 235 (347)
|.+||.--+..+... +.+..+..+..-+ +...+.+| +...+|+++|.|.++-..+++ +.+..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999997555444322 2223333332222 23344444 788899999999876544432 344568899999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEE-EeCCCceeeEEe
Q 019006 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI-WDTTSRRILYKL 314 (347)
Q Consensus 236 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~v-wd~~~~~~~~~~ 314 (347)
+.|++++.+-.+|.|.+.|.|+. ..+...+.. +.....++ .|..+.|+....|..+.+ |...++...++.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G----~vINswrpm----ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNG----KVINSWRPM----ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCC----ceeccCCcc----cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999999999999998854 223322222 11222222 467788888888889988 988777666555
Q ss_pred c
Q 019006 315 P 315 (347)
Q Consensus 315 ~ 315 (347)
+
T Consensus 957 k 957 (1034)
T KOG4190|consen 957 K 957 (1034)
T ss_pred C
Confidence 4
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-08 Score=81.95 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=101.3
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCce----eeeeeccCcceeEeecCCCCCC--EEEEEcCCCceEEEeCCCCCc
Q 019006 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQ----IKKMAEHNSFVNSCCPSRRGPP--LVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~--~~~s~~~d~~i~iwd~~~~~~ 177 (347)
..+..++++++|+.+..++...++++..... +..... ...-..+.+...... ++-..+....+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3344677788888887777776776654332 111110 011111111111111 222334455566666555555
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
...+.|-..++.++++||+++++++..|..|++-.......+..+ .||+..|..++.-+ +..|+++|.|+++++||++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecc
Confidence 555666678999999999999999999999999877655444443 57999999999875 4568999999999999998
Q ss_pred CCCC
Q 019006 257 PYAP 260 (347)
Q Consensus 257 ~~~~ 260 (347)
..+.
T Consensus 224 sgk~ 227 (390)
T KOG3914|consen 224 SGKL 227 (390)
T ss_pred cCCc
Confidence 6543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=75.79 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=90.9
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEEEEec-----CCCeEEEEECCCCceeeeeeccC
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQIISAS-----PDKTLRAWDVETGKQIKKMAEHN 142 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~ 142 (347)
++.++++..||.+.+++............ .|.+ -.+.+.-..++.|.+++ .-+..++|+++..+.+..-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 56789999999999988643111100111 1111 11122222344444432 12345566654433222112222
Q ss_pred cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCC-CCeEEEEecCCcEEEEeCCC
Q 019006 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDA-SDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 215 (347)
..+...+.+|....+++.|+.||.+-+||.++......+ .++..+..+-|+|. +..|+++++||.+--||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 347777888888889999999999999999877433222 35678999999986 56899999999999999654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-09 Score=59.78 Aligned_cols=37 Identities=32% Similarity=0.686 Sum_probs=35.0
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEe
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~ 85 (347)
++..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=66.79 Aligned_cols=216 Identities=15% Similarity=0.202 Sum_probs=131.5
Q ss_pred EEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEc-CCCCEEEEecCCCeEEEEECCCCceeeeee
Q 019006 62 TMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT-TDGSQIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
++.|.+ ++.++++--..+.|+.|+..+..... +... ....+++. +++ .|+.+..++ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~--~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLP--GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESS--SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecC--CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 567887 67777887788999999986543322 2222 26677777 564 555555555 4555988875433222
Q ss_pred c-----cCcceeEeecCCCCCCEEEEEcCC--------CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE-EEecC
Q 019006 140 E-----HNSFVNSCCPSRRGPPLVVSGSDD--------GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY-TGGID 205 (347)
Q Consensus 140 ~-----~~~~v~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 205 (347)
. .....++++..+++. +.++.... |.+..++.. ++.......-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 2 234456677777654 55554433 446666665 33322233334578999999999776 55677
Q ss_pred CcEEEEeCCCCce-------EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 206 NDVKVWDLRKGEV-------SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 206 g~i~iwd~~~~~~-------~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+.|..|++..... ...+.......-.+++..+|+..++....+.|.++|.. +..+..+... ...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-----G~~~~~i~~p----~~~ 226 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-----GKLLREIELP----VPR 226 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-----SCEEEEEE-S----SSS
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-----ccEEEEEcCC----CCC
Confidence 8899998853221 12223222347789999999988887778899999864 3344444322 135
Q ss_pred eEEEEE-CCCCCEEEEe
Q 019006 279 LLKCGW-SPDGSKVTAG 294 (347)
Q Consensus 279 ~~~~~~-s~~g~~l~sg 294 (347)
+.+++| .++...|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 788888 4676665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=76.17 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=114.4
Q ss_pred cEEEEEECCCCCe-EEEeeCC---CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEE-ecCC--CeEEEEECCC
Q 019006 59 AVYTMKFNPAGTV-IASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIIS-ASPD--KTLRAWDVET 131 (347)
Q Consensus 59 ~V~~v~~~~~~~~-l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d--g~i~iwd~~~ 131 (347)
......|+|+|+. ++..+.+ ..|+++|+.+... ..+....+......|+|||+.|+. .+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5678899999984 6654443 4588888754322 223234445566789999987764 4334 4677778877
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC----
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID---- 205 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 205 (347)
++. ..+..+........+++++..++++....+ .|.+.|+.++...+...... ....|+|+++.++.....
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence 653 334333332233457787776766665555 46666777655433222111 124899999988765433
Q ss_pred -----CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC-C--cEEEEeC
Q 019006 206 -----NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-C--KLCIWDM 255 (347)
Q Consensus 206 -----g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-~--~i~~wd~ 255 (347)
..|.+.|+.++... .+... .......|+|||+.++-...+ + .+.+.++
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 36888898877643 33222 223458899999977655433 2 2444454
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-06 Score=71.67 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=107.2
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCC-cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDR-DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~-~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
.+|.+.|.-..+..++.-++.|..|| .+-+++..+ .+...+.+.-+.|.++..+++|++++.+.....+-+.|++++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 47888899999998888999999999 789999854 333455566678999999999999999988889999999998
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEc----CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS----DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.....-+...+.+..+.++++.. .++-+- ....|+++|+..++....-.....-.+-+|+|++++|+--
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 75433334456677777777654 444333 3457899999887765443332333456788888877643
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-09 Score=96.40 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=168.9
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC--eEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK--TLRA 126 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~i 126 (347)
+...+..|....+|++|+...++|+.|+-.|.|+++++... .......+|..+|+.+.-+.+|..+++.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44567889999999999999999999999999999999643 33446789999999999999999887765433 4778
Q ss_pred EECCC-CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-----CCceEEEEEcCCCCeEE
Q 019006 127 WDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-----KYQITAVSFSDASDKIY 200 (347)
Q Consensus 127 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~ 200 (347)
|++.+ +.....+.... .+.|+.... .-+.|..-....+||+.+..++.++-. ...-++..|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~ed~----~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDK----AVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCccccccccc----eeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 98754 33333333221 123332222 223455556789999999887776421 23457888999988777
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+|| .+||.|..+.++.+...+..+. =.|+|+|+.++..+. |||+|++.... ..+ .-.-.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh----~VP------~Ldqc 1305 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLH----SVP------SLDQC 1305 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHh----cCc------cccce
Confidence 455 4799998776666544333322 358999999988765 89998653211 111 01123
Q ss_pred EEEECCCCCEEEEee-----C------------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 281 KCGWSPDGSKVTAGS-----S------------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs-----~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
.+.|+..|..+...- . -...+-||......+.++++ ...|.+++-.|...+|+-
T Consensus 1306 ~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred EEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence 445666666544332 0 01244555555566666654 346777777777776653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-05 Score=66.26 Aligned_cols=231 Identities=15% Similarity=0.177 Sum_probs=142.0
Q ss_pred eeEEEEcC-CCCEEEEecCCCe-EEEEECCCCceeeeeeccCcce--eEeecCCCCCCEEEE----EcCCCceEEEeCC-
Q 019006 103 ILDLHWTT-DGSQIISASPDKT-LRAWDVETGKQIKKMAEHNSFV--NSCCPSRRGPPLVVS----GSDDGTAKLWDMR- 173 (347)
Q Consensus 103 v~~~~~~~-~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~s----~~~d~~i~iwd~~- 173 (347)
...++.+| ....++.+-.-|+ ..+||..+++....+....... --.++++++..++++ .+..|.|-+||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34567788 4445556666554 7789999888766554332221 123566666544443 2345889999998
Q ss_pred CCCceeecCCC-CceEEEEEcCCCCeEEEEe------------------cCCcEEEEeCCCCceEEE--e--cCCCCcee
Q 019006 174 QRGAIQTFPDK-YQITAVSFSDASDKIYTGG------------------IDNDVKVWDLRKGEVSMT--L--QGHQDMIT 230 (347)
Q Consensus 174 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~i~ 230 (347)
+-..+..++.. ...-.+.+.|+++.|+++. .+..+...|.++|+.+.+ + ..|+..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 44445555432 2345567888987777652 122344566777776554 4 33677899
Q ss_pred EEEECCCCCEEEEEcCCCc-------EEEEeCCCCCCcCceeEEEec---cccccccceEEEEECCCCCEEEEee-CCCe
Q 019006 231 GMSLSPDGSYLLTNGMDCK-------LCIWDMRPYAPQNRCVKILEG---HQHNFEKNLLKCGWSPDGSKVTAGS-SDRM 299 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~-------i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~ 299 (347)
-+++.++|..++..-..|. +-+++... ....+.. ....+...+-+++++++|.++++.| ..|.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 9999999876666543332 33333221 1111111 1123456788999999999886655 6778
Q ss_pred EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 300 VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
+.+||..+++++....- ..+..++-.+++ +++|.+.-..+
T Consensus 241 ~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred EEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccEE
Confidence 99999999998865432 346777777777 67766654433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-06 Score=79.73 Aligned_cols=274 Identities=14% Similarity=0.187 Sum_probs=151.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
.+.|.++.|..++.-++.+..+|.|.+-|.... .......-...|.+++|+||.+.++.....+++.+.+- +...+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 468999999999999999999999999876432 22223334568999999999999998888888776542 111111
Q ss_pred eeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEe----cC-
Q 019006 137 KMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGG----ID- 205 (347)
Q Consensus 137 ~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d- 205 (347)
.-..+ .+....+-+..... -+-|+ .|+....+.... +..........-+.+.|--+|+++++.. .+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeT--qfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKET--QFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccccce--eeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 11000 00011111111110 11111 111111111000 0000001123346789999999998732 23
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
..|++||.. +.....-......-.+++|-|.|..+++.. .|+.|.+|...... .+...-..+ .-...+..+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p----~de~~ve~L 295 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFP----LDEKEVEEL 295 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCc----ccccchhee
Confidence 789999966 433222222223346789999999998864 45678888753211 111110011 112238899
Q ss_pred EECCCCCEEEE---eeCCCeEEEEeCCCce--eeEEecCCccCeeeEEEcCCCC--EEEEecCCCcEEee
Q 019006 283 GWSPDGSKVTA---GSSDRMVYIWDTTSRR--ILYKLPGHTGSVNESVFHATEP--VIGSCSSDKQIYLG 345 (347)
Q Consensus 283 ~~s~~g~~l~s---gs~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~i~ 345 (347)
+|+.++..||. ......|++|-..+.. +.+.+.-..... +.|+|... +++.+ .+|.+.+.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~-~sG~~~v~ 362 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLR-ESGQRLVR 362 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEe-cCCcEEEE
Confidence 99999999988 4455569999887643 122222222222 78888754 23232 45554443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-05 Score=65.89 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=106.1
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-------cccceeEEEEcCC------CCEEEEecCCCeE
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-------HKNAILDLHWTTD------GSQIISASPDKTL 124 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~s~~~dg~i 124 (347)
..=+-++|+||+.+||.+...|+|+++|+.+. .. ..+.. -..+|..|.|.+. ...|+.-..+|.+
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-EL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccc-ee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34568899999999999999999999999753 22 22221 1246777777542 2246666788888
Q ss_pred EEEECCCC-----ceeeeee--c-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC
Q 019006 125 RAWDVETG-----KQIKKMA--E-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS 196 (347)
Q Consensus 125 ~iwd~~~~-----~~~~~~~--~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (347)
+-|-+..+ +....+. . ....+.++.+.+...-++++|.....-..+. .....+++-.+-.+.
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDS 191 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCC
Confidence 77765322 2222322 2 2445777777776654444444433211110 001122222222121
Q ss_pred CeE--EEEecCCc------EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 197 DKI--YTGGIDND------VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 197 ~~l--~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
.+. +....|+. -.+|.+-+.+.........+.|..|..+|||..|++...+|.|.+|++-...
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 111 12222221 1222222111111112235679999999999999999999999999986543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-07 Score=84.11 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=127.9
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL 234 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 234 (347)
..++-|+-...+..+|+++.+..+...-. ..+.-+.. .++.+++|...|+|.+-|.++.+.++++..|++.|.++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44566666777888999887766655433 24555544 4689999999999999999999999999999999876554
Q ss_pred CCCCCEEEEEcC---------CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC-CCEEEEeeCCCeEEEEe
Q 019006 235 SPDGSYLLTNGM---------DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD-GSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 235 ~~~~~~l~t~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sgs~dg~i~vwd 304 (347)
.|+.|+++|. |..|++||+|..+. +..+.-+ ....-+.|+|. ...+++.|..|+..+-|
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~-----~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFP-----YGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccc-----cCchhhhhcccccceEEEEecccceeecc
Confidence 6899999984 66789999985432 1111111 11122346775 35788889999999998
Q ss_pred C---CCc-eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 305 T---TSR-RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 305 ~---~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
. ... .-++.+......+..+.+++.+..||.+..+|.|.+|-
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3 222 12223333344589999999999999999999999983
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-08 Score=90.72 Aligned_cols=268 Identities=16% Similarity=0.249 Sum_probs=153.5
Q ss_pred ccEEEEEECCC--CCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCC-CCEEEEec----CCCeEEEEEC
Q 019006 58 SAVYTMKFNPA--GTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTD-GSQIISAS----PDKTLRAWDV 129 (347)
Q Consensus 58 ~~V~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~----~dg~i~iwd~ 129 (347)
..+.|++++.+ ..+++.|..+|.|.+-....+- .......+|....++++|++- .+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 45677776553 4689999999999987763221 113345678889999999984 45555552 3567999999
Q ss_pred CCCc----eeeeeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeecCCCCceEEEEEcC-CCCeEEEE
Q 019006 130 ETGK----QIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTFPDKYQITAVSFSD-ASDKIYTG 202 (347)
Q Consensus 130 ~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~ 202 (347)
.++- ....+.. ......++|+. .+.+++.+|.....+.++|++.... ...+. ...+..+.++| ..++++ .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~c-s 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFC-S 213 (783)
T ss_pred ccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCcee-c
Confidence 8751 1112222 22233356665 4557888999999999999984322 12221 12345566777 445554 4
Q ss_pred ecCCcEEEEe-CCCCceEE-EecCCC----CceeEEEECCCCC-EEEEEcCC-CcEEEEeCCCCCCcC----ceeEEEec
Q 019006 203 GIDNDVKVWD-LRKGEVSM-TLQGHQ----DMITGMSLSPDGS-YLLTNGMD-CKLCIWDMRPYAPQN----RCVKILEG 270 (347)
Q Consensus 203 ~~dg~i~iwd-~~~~~~~~-~~~~~~----~~i~~v~~~~~~~-~l~t~~~d-~~i~~wd~~~~~~~~----~~~~~~~~ 270 (347)
..||.|.+|| .++-+... .+...+ +.+..++|+|..+ .+++...| ++|+++|+....... ........
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 5599999999 44433222 222112 2488999999643 45555555 689999986422111 11111111
Q ss_pred ---ccc-ccccceEEEEECCCC--CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 271 ---HQH-NFEKNLLKCGWSPDG--SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 271 ---~~~-~~~~~~~~~~~s~~g--~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
.++ ..-..|....||+.. ....++-..-.+.-|++.. ..++.|..+.+++.|+-..++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~~r~l 357 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSFKRKL 357 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhhcccc
Confidence 011 111345566666644 2344444444444444432 134566667777777655443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-07 Score=78.52 Aligned_cols=213 Identities=18% Similarity=0.191 Sum_probs=136.6
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCC--C-ceeeeeeccCcceeEeecCCCCCCEEEEEcC-CCceEEEeCCC
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVET--G-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQ 174 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~ 174 (347)
|.+.|+.+.-. -.+++++++.||.++.|--.. + +-+..+..|...+..++.+-+ ..++.+... |..++++|+..
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEeec
Confidence 66677766544 356899999999999996432 1 223334445555555554443 357778666 99999999876
Q ss_pred CCceeecCCCCceEEEEEc-CCCC---eEEEE-ecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 175 RGAIQTFPDKYQITAVSFS-DASD---KIYTG-GIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~-~~~~---~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
-..+.-+....-...+.|. ..+. .++++ -.++.+.++|-+... ....-.-|..+|..+.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 5444322221111112222 1121 34433 367899999976543 233345688999999999999999999999
Q ss_pred CcEEEEeCCC-CC-CcCceeEEEecccc------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 248 CKLCIWDMRP-YA-PQNRCVKILEGHQH------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 ~~i~~wd~~~-~~-~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
|.|..|.... ++ +..+....++ |.. .......++.|+|+|..+.+-+.|..|++++..++++++.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ceeEeecCCCcccCcccccccccc-ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999998762 11 1111111111 111 11335678889999999999999999999999988876544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-05 Score=69.16 Aligned_cols=258 Identities=12% Similarity=0.079 Sum_probs=145.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-c---------cee-EEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-N---------AIL-DLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~---------~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..+++++.++.++-+|..... ......-.. . .+. .+.. ++..++.++.+|.+..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGK-EIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 5567777777887777764322 221111100 0 000 0111 356778888999999999999988776
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEE--EEcC--CCCeEEEEecCCcEEEEeC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV--SFSD--ASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~~~~~dg~i~iwd~ 213 (347)
....... .+ .+.-. ...++.++.++.+..+|.++++.+..++.......+ .-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~-~s-sP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEA-LS-RPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCce-ec-CCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 6543221 11 00011 235667888899999999999877665432111000 0011 1346777888999999999
Q ss_pred CCCceEEEecCCCC-------ceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 214 RKGEVSMTLQGHQD-------MITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 214 ~~~~~~~~~~~~~~-------~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
.+++...+...... ....+.-+| .+..++.++.++.+..+|..+.+.. -... . .. ...+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~----W~~~-~-~~----~~~~-- 290 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV----WKRE-Y-GS----VNDF-- 290 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE----Eeec-C-CC----ccCc--
Confidence 98876554321100 011111122 3556777778899999998754321 1111 0 00 0011
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..++..|+.++.+|.++.+|..+++.+.+...-.. .....+. .+..+..++.||.++..|
T Consensus 291 ~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 291 AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 12467888888999999999999988765432111 1111112 134555667777776544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-06 Score=70.95 Aligned_cols=235 Identities=14% Similarity=0.180 Sum_probs=134.0
Q ss_pred EEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 95 VLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
.+.+|...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++|++..+....+.+|...|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5667888999999999776 6888999999999999998777777666 7789999998888999999999999999998
Q ss_pred CCC-ceeecCC---CCceEEEE------EcCCCCeEEEEecCCcEEEEeCCCCc----eEEEecCCCCceeEEEECCCCC
Q 019006 174 QRG-AIQTFPD---KYQITAVS------FSDASDKIYTGGIDNDVKVWDLRKGE----VSMTLQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 174 ~~~-~~~~~~~---~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~~~ 239 (347)
... .+..+.. ..+|..++ ..+.+..++....+ +..|++.... ++.++. ..+...++..++..+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSN 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeecCccc
Confidence 543 2222221 11222222 22233333333332 4455543211 111111 123344455555434
Q ss_pred EEEEEcCC-----------------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEE
Q 019006 240 YLLTNGMD-----------------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVY 301 (347)
Q Consensus 240 ~l~t~~~d-----------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~ 301 (347)
.++..-.. ...-+|..+.........+. +. ...+.. .++..+|+ .|.+.+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl---~t---~~ai~~---~~~nn~iv~~gd~tn~li 414 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL---ST---TQAIRA---VEDNNYIVVVGDSTNELI 414 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc---cc---ccceec---cccccEEEEecCCcceeE
Confidence 33332211 01112222110000000000 00 001111 34555555 466778999
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcCCC--CEEEEecCCCcEEe
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHATE--PVIGSCSSDKQIYL 344 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~i 344 (347)
+||+.+.+++++++-. .+|.++.....+ .+|+.-..| .++|
T Consensus 415 l~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~-~v~I 457 (463)
T KOG1645|consen 415 LQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD-RVHI 457 (463)
T ss_pred EeccchhheeeecccC-cceeecceeecCCcchhhheecc-eEEE
Confidence 9999999999988654 678888766553 355444433 4444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=74.18 Aligned_cols=206 Identities=14% Similarity=0.265 Sum_probs=128.0
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-----ceEEEeCCCCC-----
Q 019006 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-----TAKLWDMRQRG----- 176 (347)
Q Consensus 107 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~----- 176 (347)
+|++++..++.|+.+|.|.+.+- ..+.+..+..+...+........+..++++-+.|+ .+++||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 37888899999999999888762 23333555555544333333444445666665554 48999986431
Q ss_pred -ce---eecC-----CCCceEEEEEcCCCCeEEEEecCCcEEEEe--CC-C-C-ceEEEecCCCCceeEEEECCCCCEEE
Q 019006 177 -AI---QTFP-----DKYQITAVSFSDASDKIYTGGIDNDVKVWD--LR-K-G-EVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 177 -~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd--~~-~-~-~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
++ ..++ ....+.+++.+.+-..+++|-.+|.|..+. +. . + +...... -..+|+++++..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-GKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-CCCCceeeEEecCCceeE
Confidence 22 1222 235688899999989999999999999884 21 1 1 1111222 256899999998887622
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec-CCccCe
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-GHTGSV 321 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~v 321 (347)
-...-..|.+|.+.... ...+.+..+. ..+.+..+++....+++++.. .+++|+.....+-..+. ||....
T Consensus 188 Fv~Tt~~V~~y~l~gr~---p~~~~ld~~G----~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT---PSLKVLDNNG----ISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCCC---cceeeeccCC----ccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence 22233478999887322 1122233332 345666677765545555544 69999988766666666 776544
Q ss_pred e
Q 019006 322 N 322 (347)
Q Consensus 322 ~ 322 (347)
.
T Consensus 260 ~ 260 (933)
T KOG2114|consen 260 L 260 (933)
T ss_pred E
Confidence 3
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-06 Score=76.39 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=116.2
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEEC
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 235 (347)
..++.|+.+|.+.+.+..... ...+.+... +-.|.++++++.||+|.|..+-+.+...++.- ..++.+++++
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~ 121 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALH 121 (846)
T ss_pred ceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEec
Confidence 578899999999999875432 222222111 55799999999999999998888776665543 3579999999
Q ss_pred CC-----CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 236 PD-----GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 236 ~~-----~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
|+ .+.+++||.-| +.++.-+=....... . .+...+.|.++.|. |.++|-++.+| |+|||...++.
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~--l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----V--LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccce----e--eecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 97 46889999888 878764322111111 1 12335789999886 78999999887 99999999988
Q ss_pred eEEecCCcc------CeeeEEEcCCCCEEEEecC
Q 019006 311 LYKLPGHTG------SVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 311 ~~~~~~h~~------~v~~~~~~~~~~~l~s~s~ 338 (347)
+..++-... .-..+.|.++..+++--+.
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d 225 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD 225 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCCeEEEecCC
Confidence 876653322 3467788888776654443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.6e-06 Score=71.93 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=137.6
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC-----------CCceEEEeC
Q 019006 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD-----------DGTAKLWDM 172 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------d~~i~iwd~ 172 (347)
+-+.|||-|.||+|--.-| |.+|--.+...+..+. |. .|.-+.++|.. .+|++-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEc
Confidence 5678999999999987666 7899776666666654 32 34445666655 35555432 257899999
Q ss_pred CCCCceeecCC---C-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC--
Q 019006 173 RQRGAIQTFPD---K-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-- 246 (347)
Q Consensus 173 ~~~~~~~~~~~---~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-- 246 (347)
+++.....++. . ..-.-+.|+.+++++|.-.. ..|.||+..+-.+.-.-.-.-+.|....|+|.++.||=-..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99988777654 1 12345789999999886665 46888886542111100011234667778877766553110
Q ss_pred --------------CCcE---EEEeCCCCC------CcCceeEEEec-------------------c-----ccccccce
Q 019006 247 --------------DCKL---CIWDMRPYA------PQNRCVKILEG-------------------H-----QHNFEKNL 279 (347)
Q Consensus 247 --------------d~~i---~~wd~~~~~------~~~~~~~~~~~-------------------~-----~~~~~~~~ 279 (347)
...| .++++.+-+ ...-|++..+. . .......+
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 0111 111111000 00011111110 0 01123467
Q ss_pred EEEEECCCCCEEEEeeC---CCeEEEEeCCC----ceeeEEecCCccCeeeEEEcCCCCEEEEecC---CCcEEee
Q 019006 280 LKCGWSPDGSKVTAGSS---DRMVYIWDTTS----RRILYKLPGHTGSVNESVFHATEPVIGSCSS---DKQIYLG 345 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~---dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~i~ 345 (347)
...+|-|.|..+++-+. ..++.+|...+ .+++.+++. ...+.+-|+|.|++++-+.. .|.+...
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 78899999998876543 35788887763 234445543 45688999999998876653 4545443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.3e-06 Score=76.45 Aligned_cols=182 Identities=11% Similarity=0.177 Sum_probs=124.6
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
+..++-|+-...+..+|+.+.+ ......-....|+-|.. +++.+.+|...|+|.+-|.++.+.+.++..|.+.+.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3456666666666666765332 22222222233555544 47889999999999999999999999999999988765
Q ss_pred ecCCCCCCEEEEEcCC---------CceEEEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEEecCCcEEEEe---CCC
Q 019006 149 CPSRRGPPLVVSGSDD---------GTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTGGIDNDVKVWD---LRK 215 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd---~~~ 215 (347)
.. .++++++++.. .-+++||+|....+..++-.....-+.|+|.- ..+++.+..|...+-| +.+
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 43 24577777654 45789999876655554433333446677763 4677888999999888 333
Q ss_pred Cce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 216 GEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 216 ~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
... ...+......+..++++++++.++.+..+|.|.+|--+
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 211 22222334458999999999999999999999999743
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-06 Score=76.29 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=145.0
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee--e
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK--K 137 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~ 137 (347)
+.++.|+|..-.||+|-.-|.+.+|+... .+.......|+.+|..+.||++|..++|+..-|.+.+|.......+. .
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 45689999999999999999999998743 23334456799999999999999999999999999999875322211 1
Q ss_pred eecc--CcceeEeec--CCCCC------CEEEEEcCCCceE-EEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 138 MAEH--NSFVNSCCP--SRRGP------PLVVSGSDDGTAK-LWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 138 ~~~~--~~~v~~~~~--~~~~~------~~~~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+..| +..+.-+|+ .++.. +..++| ++..+- .++-+....-....+ .-.|++..++.++.+|
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg-De~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~G 212 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG-DESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSG 212 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccC-chhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCc
Confidence 2122 122222332 11110 112222 222221 222221110011100 1235677888899999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC----------------C---------CCc
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP----------------Y---------APQ 261 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~----------------~---------~~~ 261 (347)
+|+-.|- .+++....+... ...|-|.+....++..-.+-+++++-+.. . +..
T Consensus 213 tVyyvdq-~g~~~~V~k~dS--~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss 289 (1416)
T KOG3617|consen 213 TVYYVDQ-NGRQRTVHKLDS--EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS 289 (1416)
T ss_pred eEEEEcC-CCcEEEEEEccc--hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence 9988874 333322221110 01122322222222222222222221100 0 000
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------eeeEEecC---CccCeeeEEEcCCCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR-------RILYKLPG---HTGSVNESVFHATEP 331 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~---h~~~v~~~~~~~~~~ 331 (347)
+ .+..-+.........+.+++++..+..|..|...|.+.+|--... .-...+.+ -.+.|..+.|.|-.+
T Consensus 290 G-vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~ 368 (1416)
T KOG3617|consen 290 G-VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS 368 (1416)
T ss_pred c-cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc
Confidence 0 011111111122346889999999999999999999999943221 22334443 346799999999777
Q ss_pred EEEEecCC
Q 019006 332 VIGSCSSD 339 (347)
Q Consensus 332 ~l~s~s~D 339 (347)
.++--+..
T Consensus 369 ~~avn~~~ 376 (1416)
T KOG3617|consen 369 TAAVNTEE 376 (1416)
T ss_pred hhhhhhhh
Confidence 66544443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=73.78 Aligned_cols=185 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
+.+.+++++ ++.++-|..+|.+++.+..... .....|... ...+.++++|+.||++.+..+-+......
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 455666665 6789999999999999865432 223333322 33457899999999999998877777776
Q ss_pred cCCCCceEEEEEcCC-----CCeEEEEecCCcEEEEeCC--CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 181 FPDKYQITAVSFSDA-----SDKIYTGGIDNDVKVWDLR--KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
+.-+..+.+++++|+ .+.+++|+..| +.++.-+ ..+....+..-.++|.+++|. |+++|-++.+| |++|
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 666778999999998 56899999988 7777532 122222455557899999995 77887777665 9999
Q ss_pred eCCCCCCcCceeEEEeccccc--cccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHN--FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
|+...+ .+..++..... .+.....+.|.++ ..|+-|-.| +|++...+
T Consensus 185 d~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred eccccc----eeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 986422 11111111111 1112334567665 455566655 68888766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-05 Score=69.05 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=120.5
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccc-eeEEEEcCCCCEEEEecCCC-----eEEEEECCCCc----
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNA-ILDLHWTTDGSQIISASPDK-----TLRAWDVETGK---- 133 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~---- 133 (347)
.|++.+..+|.|+.+|.|.+.+- .......++.+... |..+.......+|++.+.|+ .++||+++..+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 35688999999999999988764 23333556667666 44443333446888888775 49999986432
Q ss_pred --ee--eeeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEe--C-CCCCcee--ecCCCCceEEEEEcCCCCe-
Q 019006 134 --QI--KKMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWD--M-RQRGAIQ--TFPDKYQITAVSFSDASDK- 198 (347)
Q Consensus 134 --~~--~~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd--~-~~~~~~~--~~~~~~~v~~~~~~~~~~~- 198 (347)
.. ..+..+ ..++..++.+.+ -..++.|-.+|.|.++. + |.+.... ..+.+.+|+.+.+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 11 112121 122333333333 46788899999999884 2 2222222 2345678999999988876
Q ss_pred EEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 199 IYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+++++ ...|.+|.+....+ ...+..|...++|-++++....+++++.. .+.+||...
T Consensus 187 lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 187 LFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred EEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 33333 34689998874332 33466677788999998866657766644 699998763
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0001 Score=70.13 Aligned_cols=222 Identities=19% Similarity=0.315 Sum_probs=133.6
Q ss_pred CCEEEEe-cCCCeEEEEECCCCceeeeeeccCcc-eeEeecCCC----CCCEEEEEcCCCceEEEeCCCCC--cee----
Q 019006 112 GSQIISA-SPDKTLRAWDVETGKQIKKMAEHNSF-VNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRG--AIQ---- 179 (347)
Q Consensus 112 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~--~~~---- 179 (347)
.++|+.- .....++-.|++.|+.+..+..+... +..+++... .+.-.+.|-.+..+..||.|-.. .+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 34577999999999999988877654 555554321 12234568888999999998543 232
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC--
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR-- 256 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~-- 256 (347)
.+.......|++-+. .+++|+|+.+|.||+||- .+. ....+.+-..+|..|..+.||+++++.+.. -|.|++..
T Consensus 573 ~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t~~~ 649 (794)
T PF08553_consen 573 QYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDTLIK 649 (794)
T ss_pred ccccCCCceEEEecC-CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEEeee
Confidence 123344677777765 458999999999999994 443 333456667899999999999999887754 56666642
Q ss_pred C----------------CCCcCceeEEEecccccc------ccceEEEEECC----CCCEEEEeeCCCeEEEEeCCC---
Q 019006 257 P----------------YAPQNRCVKILEGHQHNF------EKNLLKCGWSP----DGSKVTAGSSDRMVYIWDTTS--- 307 (347)
Q Consensus 257 ~----------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~----~g~~l~sgs~dg~i~vwd~~~--- 307 (347)
. ..+..+.++.-+.|...+ ........|+. ....|++ +....+.+|+++.
T Consensus 650 ~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivt-stG~f~v~Wnf~kV~~ 728 (794)
T PF08553_consen 650 DGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVT-STGPFVVTWNFKKVKR 728 (794)
T ss_pred cCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEE-eccCEEEEEEHHHHhC
Confidence 1 011222222222222111 12334455642 2344544 4456899999753
Q ss_pred c-eeeEEecCCccCee--eEEEcCCCCEEEEec
Q 019006 308 R-RILYKLPGHTGSVN--ESVFHATEPVIGSCS 337 (347)
Q Consensus 308 ~-~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s 337 (347)
+ ..-|+++.-...|. ...|..++..|++--
T Consensus 729 g~~~~Y~ikry~~~V~~dnF~fg~d~~vival~ 761 (794)
T PF08553_consen 729 GKKDPYQIKRYDENVVADNFKFGSDKNVIVALP 761 (794)
T ss_pred CCCCceEEEEcCCceEEccceeCCCCcEEEEcc
Confidence 2 23345544444553 555666666665443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0015 Score=55.02 Aligned_cols=189 Identities=14% Similarity=0.211 Sum_probs=115.0
Q ss_pred EEEECC-CCCeEEEeeCCCc-EEEEeccCCCeee-------EEEeCcccceeEEEEcCCCCEEEEecC-----CCeEEEE
Q 019006 62 TMKFNP-AGTVIASGSHDRD-IFLWHVHGDCKNF-------MVLKGHKNAILDLHWTTDGSQIISASP-----DKTLRAW 127 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~~-v~~w~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iw 127 (347)
.++.+| .+..+|.+-.-|+ ..+||..+..... ..+.|| -.|++||++|++.-. .|.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 456667 4456666666665 4567764332111 123444 359999999998743 4889999
Q ss_pred ECC-CCceeeeeeccCcceeEeecCCCCCCEEEEE-----------------cCCCceEEEeCCCCCceee--cC---CC
Q 019006 128 DVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSG-----------------SDDGTAKLWDMRQRGAIQT--FP---DK 184 (347)
Q Consensus 128 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------~~d~~i~iwd~~~~~~~~~--~~---~~ 184 (347)
|.. +.+.+.++..+.---..+...+++..++++- +.+-.+-..|..++..+.. ++ +.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 998 5566777766654444555666654444331 1223344455666666554 32 23
Q ss_pred CceEEEEEcCCCCeEEEEecCCc-------EEEEeCCCCceEEEec-------CCCCceeEEEECCCCCEEEEEc-CCCc
Q 019006 185 YQITAVSFSDASDKIYTGGIDND-------VKVWDLRKGEVSMTLQ-------GHQDMITGMSLSPDGSYLLTNG-MDCK 249 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~t~~-~d~~ 249 (347)
..+..+++.+++..++..-..|. |-+++. ++....+. .-..++-+|++++++.++++.+ ..+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46888999988876666554442 344432 22222221 2246799999999998776555 6679
Q ss_pred EEEEeCCCC
Q 019006 250 LCIWDMRPY 258 (347)
Q Consensus 250 i~~wd~~~~ 258 (347)
+.+||..+.
T Consensus 241 ~~~~d~~tg 249 (305)
T PF07433_consen 241 VAVWDAATG 249 (305)
T ss_pred EEEEECCCC
Confidence 999998753
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0011 Score=61.24 Aligned_cols=261 Identities=15% Similarity=0.160 Sum_probs=143.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc------cee--EEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN------AIL--DLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+..+..++.++.++-.|.... +.......... .+. .+... ++..++.++.++.|.-+|.++++.+.++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 455667777888888887432 22111111110 110 01111 226788888999999999999998877654
Q ss_pred cCcc-----eeEeecCCCCCCEEEEEc---------CCCceEEEeCCCCCceeecCCCC---------------------
Q 019006 141 HNSF-----VNSCCPSRRGPPLVVSGS---------DDGTAKLWDMRQRGAIQTFPDKY--------------------- 185 (347)
Q Consensus 141 ~~~~-----v~~~~~~~~~~~~~~s~~---------~d~~i~iwd~~~~~~~~~~~~~~--------------------- 185 (347)
.... +.. .+.-.+ .+++.++ .++.+..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~s-sP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 139 NDQVPPGYTMTG-APTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCcCcceEecC-CCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 3321 110 000011 2444443 35788889998887765543210
Q ss_pred ce-EEEEEcCCCCeEEEEecCC------------------cEEEEeCCCCceEEEecCCCCcee------EEEEC----C
Q 019006 186 QI-TAVSFSDASDKIYTGGIDN------------------DVKVWDLRKGEVSMTLQGHQDMIT------GMSLS----P 236 (347)
Q Consensus 186 ~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~------~v~~~----~ 236 (347)
.+ ....+++.+..++.++.++ .|.-+|..+++....++.-..... ...+. -
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 00 1234555567788887665 688999999998877642111111 00111 1
Q ss_pred CCC---EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe------------------e
Q 019006 237 DGS---YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG------------------S 295 (347)
Q Consensus 237 ~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg------------------s 295 (347)
++. .++.++.+|.+...|.++.+...+. ... ...++.+| ..+..+ .
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~--~~~---------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISAR--PEV---------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEe--Eee---------ccccccCC--ceEEEccccccccCcccccCCCCCC
Confidence 233 5778888999999998765432211 110 00112233 223222 2
Q ss_pred CCCeEEEEeCCCceeeEEecCCc--------cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHT--------GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+|.|.-.|+.+++.+.+.+... .....-.....+..+..++.||.++-.|
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 46789999999999887765331 1111111112345677777888887665
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0018 Score=55.13 Aligned_cols=229 Identities=14% Similarity=0.194 Sum_probs=129.9
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee---------
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK--------- 137 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------- 137 (347)
..++.|+.|..+| +++++........... +...|..+...++-+.++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 8888883222222222 223499999998877766654 59999999875433221
Q ss_pred -----eeccCcceeEee--cCCCCCCEEEEEcCCCceEEEeCCCC-----CceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 138 -----MAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQR-----GAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 138 -----~~~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.......+..++ ....+...++ .....+|.+|..... ...+.+.-...+..+.|. ++.++.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 011122233333 1222333333 334458888776542 345556666778888887 5677777654
Q ss_pred CcEEEEeCCCCceEEEecCC------------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc
Q 019006 206 NDVKVWDLRKGEVSMTLQGH------------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~------------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
...+.|+.++.....+... ..++..+.. +++.+|++- |..-.+-|.. ..+.. ...+
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r--~~~i----- 225 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSR--KSTI----- 225 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCc--ccEE-----
Confidence 4788898866543222111 122333333 345666653 3333344432 11111 1111
Q ss_pred ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 274 NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.+......+++ ...+|+.-+.+ .|.||++.++++++.+...
T Consensus 226 ~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 226 QWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 12233445555 34688776665 5999999999999988754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.7e-06 Score=73.10 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....+.+++++|+...|+.|..||.|.+||...+... ...+.-.++.++|||++.+++.|+..|.+.+||+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3467899999999999999999999999998776433 2233445789999999999999999999999996
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00026 Score=68.55 Aligned_cols=231 Identities=15% Similarity=0.170 Sum_probs=131.9
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
+.|.++.|..+...++.+..+|.|.+-|.++.... ....-...|...+++++. .+++..+..+++.+-+- .-.++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec-cccchhc
Confidence 68999999999999999999999999887765432 222234456667777765 46666666666655321 1111111
Q ss_pred c------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEecCCCCceeEEEECCCCCEEEEEc----CC-C
Q 019006 181 F------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNG----MD-C 248 (347)
Q Consensus 181 ~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~----~d-~ 248 (347)
. ........+.|-.....| -|+ .|...-.+....+. ......+.. =++|+|.-||.++++.. .+ +
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCce
Confidence 1 111222333332211111 111 11111111100000 000111222 35689999999999842 23 7
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe---eCCCeEEEEeCCC---ceeeEEecCCccCee
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG---SSDRMVYIWDTTS---RRILYKLPGHTGSVN 322 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---s~dg~i~vwd~~~---~~~~~~~~~h~~~v~ 322 (347)
.|++||.. ...+. ........-.+++|-|.|.++++- ++|+.|.+|.... ++..-.++....++.
T Consensus 223 kirV~drE-g~Lns--------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNS--------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred eEEEeccc-chhhc--------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchh
Confidence 99999965 11110 011112334577899999999874 3566899997432 332334455566799
Q ss_pred eEEEcCCCCEEEE---ecCCCcEEeec
Q 019006 323 ESVFHATEPVIGS---CSSDKQIYLGE 346 (347)
Q Consensus 323 ~~~~~~~~~~l~s---~s~D~~i~i~~ 346 (347)
.++|+.+..+||. +.....|++|.
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEE
Confidence 9999999999997 55666699985
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=70.43 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=68.5
Q ss_pred EEEeCCCCC----ceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 168 KLWDMRQRG----AIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 168 ~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
.+|+....+ .+..++....+.+.+++|+...++.|..||.|.+||...+..... + ..-..+.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEEEE
Confidence 345654433 234557778899999999999999999999999999876643322 2 2344678999999999999
Q ss_pred EcCCCcEEEEeCC
Q 019006 244 NGMDCKLCIWDMR 256 (347)
Q Consensus 244 ~~~d~~i~~wd~~ 256 (347)
|+..|.+.+||+.
T Consensus 317 ~s~qGelQ~FD~A 329 (545)
T PF11768_consen 317 GSEQGELQCFDMA 329 (545)
T ss_pred EcCCceEEEEEee
Confidence 9999999999985
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0011 Score=61.06 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=72.5
Q ss_pred cCCCCeEEEEecCCcEEEEeCCC----C-ceEEEecCCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCc-----
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRK----G-EVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQ----- 261 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~----- 261 (347)
.+++++... .++.|.+.|.++ + +....+.- ......+.++|||+++++++. +.++.+.|+......
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 345666555 357899999987 3 34444433 345688999999999887764 789999999754310
Q ss_pred ---CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 262 ---NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 262 ---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
...+...+ .-......+|.++|....+-..|..|-.||+..
T Consensus 362 ~~~~~vvaeve-----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPE-----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeec-----cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 01111111 111234678999999888888999999999876
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0019 Score=57.50 Aligned_cols=234 Identities=13% Similarity=0.131 Sum_probs=121.5
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC------------------------------------------eeeEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC------------------------------------------KNFMVL 96 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~------------------------------------------~~~~~~ 96 (347)
.|..|+|+++..-||+|-..|.|.+|....+. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999998653110 011123
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee--c------cCcceeEeec----CCCCC---CEEEEE
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA--E------HNSFVNSCCP----SRRGP---PLVVSG 161 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~----~~~~~---~~~~s~ 161 (347)
....++|++++.| |-.+++.|..+|.+.|.|++....+..-. . ....+..+.| ...+. .+++.|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446789999987 45589999999999999997665544321 1 1122333322 22222 367889
Q ss_pred cCCCceEEEeCC--CCCc-----eeec-CCCCceEEEE-EcCCC--------------------CeEEEEecCCcEEEEe
Q 019006 162 SDDGTAKLWDMR--QRGA-----IQTF-PDKYQITAVS-FSDAS--------------------DKIYTGGIDNDVKVWD 212 (347)
Q Consensus 162 ~~d~~i~iwd~~--~~~~-----~~~~-~~~~~v~~~~-~~~~~--------------------~~l~~~~~dg~i~iwd 212 (347)
++.|.+.+|.+. .+.. .... .+...+..+. ++.+. +.++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999764 1111 1111 2233333332 22211 2244445566799999
Q ss_pred CCCCceEEEecCCCCceeEEEEC-----CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLS-----PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~-----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
..+.+.........-....+.+- ..+..|++-..+|.++++.+-..+. +....-........+....++++
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke----i~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE----IKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E----EEEEE-SS---HHHHTT-EE-TT
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH----hhcccCCCccccccccccEECCC
Confidence 88777655544221222334442 3466788888999999999864332 22222111101122334557888
Q ss_pred CCEEEEeeCC
Q 019006 288 GSKVTAGSSD 297 (347)
Q Consensus 288 g~~l~sgs~d 297 (347)
|..++-.+..
T Consensus 318 Gdi~~~~gps 327 (395)
T PF08596_consen 318 GDIFYWTGPS 327 (395)
T ss_dssp S-EEEE-SSS
T ss_pred CCEEEEeCcc
Confidence 8877665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.004 Score=57.60 Aligned_cols=238 Identities=16% Similarity=0.119 Sum_probs=122.7
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccc--eeEEEEcC--CCCEEEEec---------CCCeEEEEECCCCceee
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNA--ILDLHWTT--DGSQIISAS---------PDKTLRAWDVETGKQIK 136 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~ 136 (347)
..++.++.++.|+.+|.... +..-........ -..+.-+| .+..++.++ .+|.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG-~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG-KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCC-CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 56667778888888887532 222222111110 00011111 123444443 46889999999998877
Q ss_pred eeeccCcc--------------------eeE-eecCCCCCCEEEEEcCCC------------------ceEEEeCCCCCc
Q 019006 137 KMAEHNSF--------------------VNS-CCPSRRGPPLVVSGSDDG------------------TAKLWDMRQRGA 177 (347)
Q Consensus 137 ~~~~~~~~--------------------v~~-~~~~~~~~~~~~s~~~d~------------------~i~iwd~~~~~~ 177 (347)
.+...... +.. ..... ...+++.++.++ .+.-+|+.+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66432110 000 00011 124566676554 688889988887
Q ss_pred eeecCCC-Cc-----e-EEEEEc----CCCC---eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 178 IQTFPDK-YQ-----I-TAVSFS----DASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 178 ~~~~~~~-~~-----v-~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
.-.+... .. . ....+. -++. .++.++.+|.++.+|.++|+.+...... ...++.+| ..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 7655321 10 0 000111 1222 5778889999999999999987765321 11123333 22222
Q ss_pred E------------------cCCCcEEEEeCCCCCCcCceeEEEecccccc--ccceEEEEECCCCCEEEEeeCCCeEEEE
Q 019006 244 N------------------GMDCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNLLKCGWSPDGSKVTAGSSDRMVYIW 303 (347)
Q Consensus 244 ~------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sgs~dg~i~vw 303 (347)
+ ..+|.+.-.|+.+.+...+ .....+.... ............+..|+.|+.||.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~--~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWE--KREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeE--eeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 1 1245566666554321111 1111000000 0001000011256789999999999999
Q ss_pred eCCCceeeEEecC
Q 019006 304 DTTSRRILYKLPG 316 (347)
Q Consensus 304 d~~~~~~~~~~~~ 316 (347)
|..+|+++.+.+-
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=58.83 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=110.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE-eCCCCCce
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-DMRQRGAI 178 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw-d~~~~~~~ 178 (347)
......+.++|+|+.++. +.||.-.|+.....+. ... +.....+|... ..++.-..+.+|.++ ++.. ...
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~----G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~-~~~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAF----GSGLSFVWSSR--NRYAVLESSSTIKIYKNFKN-EVV 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEE----EE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE--TT
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-ccc----CceeEEEEecC--ccEEEEECCCeEEEEEcCcc-ccc
Confidence 334688999999998887 5677777877433332 122 11223444443 346666668889996 4432 222
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..+.....+..+-. |..|...+.+ .|.+||..+++.+.++... .|..+.|++++++++..+.+ .+.+++....
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 23333333333332 6666666554 7999999999998888753 48899999999999998866 6777764311
Q ss_pred -------CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 259 -------APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 259 -------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
......+..+. .....|.+..|..| -++.+... .|+.+--.....+..+ ...+.-+.+.+...
T Consensus 176 ~~~~~~~~g~e~~f~~~~----E~~~~IkSg~W~~d-~fiYtT~~--~lkYl~~Ge~~~i~~l---d~~~yllgy~~~~~ 245 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIH----EISERIKSGCWVED-CFIYTTSN--HLKYLVNGETGIIAHL---DKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHBTTTB-GGGEEEEE----EE-S--SEEEEETT-EEEEE-TT--EEEEEETTEEEEEEE----SS--EEEEEETTTT
T ss_pred hcccccccCchhceEEEE----EecceeEEEEEEcC-EEEEEcCC--eEEEEEcCCcceEEEc---CCceEEEEEEccCC
Confidence 00000122221 11245667777665 33444333 5555322222223333 34666777778777
Q ss_pred EEEEecCCCcEEeec
Q 019006 332 VIGSCSSDKQIYLGE 346 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~ 346 (347)
.+.....|+.|....
T Consensus 246 ~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 246 RLYLIDRDGNVISYE 260 (443)
T ss_dssp EEEEE-TT--EEEEE
T ss_pred EEEEEECCCCEEEEE
Confidence 888888888876654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-06 Score=77.31 Aligned_cols=199 Identities=15% Similarity=0.267 Sum_probs=124.9
Q ss_pred ceeEEEEcCCC--CEEEEecCCCeEEEEECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEc----CCCceEEEeCC
Q 019006 102 AILDLHWTTDG--SQIISASPDKTLRAWDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGS----DDGTAKLWDMR 173 (347)
Q Consensus 102 ~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~d~~i~iwd~~ 173 (347)
.+.++++.-+. ..++.|..+|.|-+-.+....- -.....+....++.++.+.+...+++|- .|-.+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566665433 4677888999999877654221 1223344556666777776666676664 45678999998
Q ss_pred CC--Cceee--cC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECC-CCCEEEEEc
Q 019006 174 QR--GAIQT--FP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSP-DGSYLLTNG 245 (347)
Q Consensus 174 ~~--~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~-~~~~l~t~~ 245 (347)
++ .+... +. ......+++|..+.+.+.+|.....+.++|+|... ....+ .+..+..+.+.| ..+|+++..
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc
Confidence 76 22221 11 22345688888888899999999999999998432 22222 233566778888 677877766
Q ss_pred CCCcEEEEe-CCCCCCcCceeEEEeccccccccceEEEEECCCC-CEEEEee-CCCeEEEEeCC
Q 019006 246 MDCKLCIWD-MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG-SKVTAGS-SDRMVYIWDTT 306 (347)
Q Consensus 246 ~d~~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs-~dg~i~vwd~~ 306 (347)
||.|.+|| .+..+ ..+..+..........+..++|.|.. .+|++.+ ..++|+++|..
T Consensus 216 -dg~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 44322 11222211111223468889999853 3455544 45789999864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.002 Score=58.14 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=114.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+....-....|+++|+|+.+++ ..||.-.++.... .+... .+.-....|.+.+ .+|+-...++|.|+.--+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 3334456889999999999988 5667777777432 22211 2344677899854 5666666888999632222
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEe
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 212 (347)
+....+... ..+..+.. + .++...+. +.|.+||..+++.+..+.... |..+.|++++.+++..+.+ .+++++
T Consensus 100 ~~~k~i~~~-~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcCC-cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 222233221 11222222 3 34444433 479999999999998887653 8899999999999888765 677776
Q ss_pred CCCC----------c-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 213 LRKG----------E-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 213 ~~~~----------~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
.... + ....+..-...|.+.+|..+ -++.|... .++.+--. . ...+.. .+.++.-
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl~~G------e-~~~i~~----ld~~~yl 237 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYLVNG------E-TGIIAH----LDKPLYL 237 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEEETT------E-EEEEEE-----SS--EE
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEEEcC------C-cceEEE----cCCceEE
Confidence 4322 0 11222221457888899765 44445443 66664211 1 111111 1234555
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+.+.|+.+.|.....|+.+..+.+....
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 6667777788888888888877665433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.8e-05 Score=69.09 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE
Q 019006 163 DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 163 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
..|.+.||- .++.+-........+++++|+|..-.|+.|=.-|.+.+|...+.+.......|..+|..+.|+++|+.++
T Consensus 39 r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEE
Confidence 457777773 3444444444556688899999887888888889999998876666666667899999999999999999
Q ss_pred EEcCCCcEEEEeCC
Q 019006 243 TNGMDCKLCIWDMR 256 (347)
Q Consensus 243 t~~~d~~i~~wd~~ 256 (347)
|+..-|.+.+|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0011 Score=59.67 Aligned_cols=185 Identities=20% Similarity=0.123 Sum_probs=100.8
Q ss_pred ceeEeecCCCCCCEEEEEcCC---CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE-EecCC--cEEEEeCCCCc
Q 019006 144 FVNSCCPSRRGPPLVVSGSDD---GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT-GGIDN--DVKVWDLRKGE 217 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~ 217 (347)
.+..-.+++....+....-.. ..+.++|+.++...........-..-.|+|+++.++. ...|| .|+++|+....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 333344555554433332222 3588889887766555544444555689999998764 44555 47788887766
Q ss_pred eEEEecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 218 VSMTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
... +..-...-..-.|+|+|++++= .+..|.-.||-....... ...+...... -..-.|+|||++|+..+.
T Consensus 274 ~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~~riT~~~~~----~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 274 LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---VTRLTFSGGG----NSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---eeEeeccCCC----CcCccCCCCCCEEEEEec
Confidence 333 3222222235679999998764 455565555543321111 1112111111 114458999999987664
Q ss_pred -CCe--EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec
Q 019006 297 -DRM--VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 297 -dg~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 337 (347)
+|. |.+.|..++.-+ +...+......-.|.+++..+...+
T Consensus 346 ~~g~~~i~~~~~~~~~~~-~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 346 SGGQWDIDKNDLASGGKI-RILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCCceeeEEeccCCCCcE-EEccccccCCCCCcCCCCceEEEec
Confidence 354 667777665533 2223333344455666666555443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00024 Score=67.68 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=91.3
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCc-eeEEEECCC-------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPD-------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~~~-------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
...+.|+-.|+..|+.+.++..|... |.. +.|+ ....+.|-.++.+..||.|-.. .+++. ...+.-.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~-~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD-SQSKQYS 575 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC--Cceee-ccccccc
Confidence 45678999999999999999887653 444 4443 2345666678899999998432 22221 1111111
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
-...+.+++-+.+ .+||+||.+|.||+||....+-...+++-..+|..|..+.+|++|..++..-.
T Consensus 576 ~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyL 641 (794)
T PF08553_consen 576 SKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYL 641 (794)
T ss_pred cCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceE
Confidence 1234555555555 48999999999999996544444567888899999999999998876665433
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.2e-05 Score=63.75 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=75.6
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTG 202 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 202 (347)
+++.+..+.+...-+..+...+.++++++....++..++.+.+|++.|+++...+..+.....+.+++|+-+. .++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 5555544444444555677788889998887778999999999999999999888888777889999998665 467888
Q ss_pred ecCCcEEEEeCCCCc
Q 019006 203 GIDNDVKVWDLRKGE 217 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~ 217 (347)
-.+|.|++||++..+
T Consensus 255 l~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPE 269 (463)
T ss_pred ccCceEEEEEccCCC
Confidence 899999999998754
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0096 Score=53.21 Aligned_cols=192 Identities=17% Similarity=0.230 Sum_probs=128.4
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec---CCcEEEEeCCCCceEEEecC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 224 (347)
....+.+.+.++....++.+.+.|...........-......++++++++.++.+.. ++++.+.|..+++...+...
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 445556666777777789999999877776666655456778999999988887665 68899999888877766543
Q ss_pred CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeE
Q 019006 225 HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMV 300 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i 300 (347)
-..+ ..++++|+|+.++... .++.|.+.|...... .................+.++|+|.++...-.. +.+
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v----~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV----VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce----eccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 3334 8899999999666554 778999999653211 100000001111234567789999977665433 699
Q ss_pred EEEeCCCceeeEE-ecCCccCeeeEEEcCCCCEEEEecCC-CcEEe
Q 019006 301 YIWDTTSRRILYK-LPGHTGSVNESVFHATEPVIGSCSSD-KQIYL 344 (347)
Q Consensus 301 ~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~D-~~i~i 344 (347)
...|..++..... +..-......++++|++..+-..... +.+.+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 9999998877654 22222246678899999877655332 44443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.012 Score=53.11 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=85.2
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec--cCcceeEe-----ecCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE--HNSFVNSC-----CPSR 152 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~-----~~~~ 152 (347)
.|.+|+..|.......++. +.+.++.|+.+ ..|+....||.++++|+.... ...+.. ....+..+ .+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS--GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECC--CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 4888888765332333444 78999999975 566777899999999986322 111100 11111111 1111
Q ss_pred CCCCEEEEEcCCCceEEEe-CCCCCcee---ecCCCC-------ceEE-EEEcCCCCeEEEEecCCcEEEEeCCCCceEE
Q 019006 153 RGPPLVVSGSDDGTAKLWD-MRQRGAIQ---TFPDKY-------QITA-VSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iwd-~~~~~~~~---~~~~~~-------~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (347)
. + +++ -..++.+.+.+ ........ ..+... .... ..++.+....+....++.+.+.+-...+.
T Consensus 138 ~-G-ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 N-G-IVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred C-C-EEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 2 2 222 23344444432 22111111 111100 0000 22333344444444445555443222111
Q ss_pred EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+. ..+++..|++||+++++|.-..+|.+.+....
T Consensus 213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 22 23579999999999999999999999888643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0093 Score=51.21 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=122.5
Q ss_pred EcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----
Q 019006 108 WTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---- 182 (347)
Q Consensus 108 ~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---- 182 (347)
|.++...| .+--..+.|.-|+..+++. ..+. ....+.......... +++++. .-+.+++...+..+..+.
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEeccccC
Confidence 66665543 3444567788888776543 1222 222222222222222 344433 335666665444422221
Q ss_pred --CCCceEEEEEcCCCCeEEEEec-----------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CC
Q 019006 183 --DKYQITAVSFSDASDKIYTGGI-----------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DC 248 (347)
Q Consensus 183 --~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~ 248 (347)
.....+.....|++.+-+.... -|.|+.+|. .+.....+..+-..-++|+||||++.|+.+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1235677888888776654333 133555554 45555555554455688999999987777654 47
Q ss_pred cEEEEeCCC--CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEeCCCceeeEEecCCccCeeeEE
Q 019006 249 KLCIWDMRP--YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWDTTSRRILYKLPGHTGSVNESV 325 (347)
Q Consensus 249 ~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd~~~~~~~~~~~~h~~~v~~~~ 325 (347)
.|.-|++.. .....+........ .....-.++...+|.+-+++-.+| .|.+|+.+ ++++.++.-....+.+++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~---~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDE---EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccC---CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 888887753 11111110111111 122333455667888876555554 89999998 888888776667788888
Q ss_pred EcCC--CCEEEEecCC
Q 019006 326 FHAT--EPVIGSCSSD 339 (347)
Q Consensus 326 ~~~~--~~~l~s~s~D 339 (347)
|--. +.+++|+...
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 8664 3455554443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00024 Score=62.96 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=96.6
Q ss_pred CCCeE-EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-------EEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 195 ASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-------YLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 195 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-------~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
+.+.+ .++.....++-.|+..|+.+.++.-+.+ |+-+.+.|+.. .-+.|-.|+.|.-||.|-... ..+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--NKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--ceee
Confidence 33444 4566677899999999999999887766 77777887653 234455688999999984321 1222
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
..+.|+-.-.....+.+-.. ..++++||.+|.|++||-...+-..-+++-..+|..+..+.+|++|...+..
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 23333222222333443333 4589999999999999974444445688999999999999999987766543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.007 Score=49.20 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE-EE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT-AV 190 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~ 190 (347)
..+++.|+..+.+.--|..+|+...+.......-.+... - +++++.|...|.+.+.+.+++..+..+.....|. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--E-CCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 356777777788887788877765443222111111111 1 2468889999999999999998777665444332 24
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 191 SFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
..++++..++.|+.|+..+..|.++..++...+--...-.+-+..|
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 4678899999999999999999999888887654333233334455
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.011 Score=51.55 Aligned_cols=268 Identities=15% Similarity=0.163 Sum_probs=116.7
Q ss_pred EECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeecc
Q 019006 64 KFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH 141 (347)
Q Consensus 64 ~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 141 (347)
.|.++|+ +|+++..||.-.+|-++=.......|.... .......++++++.++-...+..++-.|+++.+...-+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4667885 455566676654444432223344444332 22334567888888876666678888899887654333333
Q ss_pred CcceeEeec--CCCCCCEEEEEc----------------------CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 142 NSFVNSCCP--SRRGPPLVVSGS----------------------DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 142 ~~~v~~~~~--~~~~~~~~~s~~----------------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
...+....+ ..+. .+++..- ....|...|+++++....+.....+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 333321111 2222 2222110 11234445666666555555566678888999877
Q ss_pred eEEEEecCC-----cEEEEeCCC-CceEEEecCCCC--ceeEEEECCCCCEEEEE-----cCCCcEEEEeCCCCCCcCce
Q 019006 198 KIYTGGIDN-----DVKVWDLRK-GEVSMTLQGHQD--MITGMSLSPDGSYLLTN-----GMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 198 ~l~~~~~dg-----~i~iwd~~~-~~~~~~~~~~~~--~i~~v~~~~~~~~l~t~-----~~d~~i~~wd~~~~~~~~~~ 264 (347)
.++.=+..| .-|||-+++ +.....+..+.. .+.-=-|.|+|..+.=- +.+..|.-+|+..... +.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~~ 278 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER--RR 278 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E--EE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc--eE
Confidence 666533322 236675543 222233322221 22333478888765432 2234455556553211 11
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCC----------------CeEEEEeCCCceeeEEecCCc---------c
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD----------------RMVYIWDTTSRRILYKLPGHT---------G 319 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d----------------g~i~vwd~~~~~~~~~~~~h~---------~ 319 (347)
+... ....-.--++||++++-=+.| -.|+++++..++.. .+..|. .
T Consensus 279 ~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 279 LMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDR 349 (386)
T ss_dssp EEEE---------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBS
T ss_pred EEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCC
Confidence 1111 122333457899988753333 25778888776543 122221 1
Q ss_pred C--eeeEEEcCCCCEEEEec-CCCcEE
Q 019006 320 S--VNESVFHATEPVIGSCS-SDKQIY 343 (347)
Q Consensus 320 ~--v~~~~~~~~~~~l~s~s-~D~~i~ 343 (347)
- =....|+||+++++-.| ..|...
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~ 376 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPA 376 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-E
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCcc
Confidence 1 15678999999777555 455533
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0044 Score=55.79 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=104.6
Q ss_pred cceeEEEEcCCCCEEEEec---CC-CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCC
Q 019006 101 NAILDLHWTTDGSQIISAS---PD-KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQ 174 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~ 174 (347)
..+..=+|+|++..++-.. .. ..+.++++++++...... -......-.+++++..++++...||...+| |+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3455567999988766442 22 468899998876543332 112222245678888888888888876655 7766
Q ss_pred CCceeecCCC-CceEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCC-C
Q 019006 175 RGAIQTFPDK-YQITAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMD-C 248 (347)
Q Consensus 175 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d-~ 248 (347)
+...+ +.+. ..-..-.|+|+|..++-.+. .| .|.++|...+.... +...-.. ..-.|+|+|++++..+.. |
T Consensus 272 ~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 272 KNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred Cccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCEEEEEeccCC
Confidence 65333 3322 22335678999998875553 44 47777776654322 2222222 256789999998877643 4
Q ss_pred c--EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 249 K--LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 249 ~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
. |.+.|+..... .+.+.... ....-.|.++|..++..+.
T Consensus 349 ~~~i~~~~~~~~~~----~~~lt~~~-----~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGK----IRILTSTY-----LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCc----EEEccccc-----cCCCCCcCCCCceEEEecc
Confidence 3 44444432211 22222111 1123346788887765443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.7e-05 Score=42.44 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=34.2
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.+..+.+|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0033 Score=54.84 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=96.8
Q ss_pred CceEEEeCCCC----Cc---eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecC-CCCceeEEEEC
Q 019006 165 GTAKLWDMRQR----GA---IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQG-HQDMITGMSLS 235 (347)
Q Consensus 165 ~~i~iwd~~~~----~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~i~~v~~~ 235 (347)
|.|.++++... .. +.....+..|++++-- +..++++ ..+.|++|++...+ ....-.. ....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 88999999874 12 2223345678887765 3444433 34789999988776 3322211 2234555554
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-------c
Q 019006 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-------R 308 (347)
Q Consensus 236 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-------~ 308 (347)
.+++++.|.....+.++..+. ....+..+... .....+.++.|-+++..++.+..+|.+.++.... +
T Consensus 138 -~~~~I~vgD~~~sv~~~~~~~---~~~~l~~va~d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~ 211 (321)
T PF03178_consen 138 -FKNYILVGDAMKSVSLLRYDE---ENNKLILVARD--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDG 211 (321)
T ss_dssp -ETTEEEEEESSSSEEEEEEET---TTE-EEEEEEE--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTT
T ss_pred -cccEEEEEEcccCEEEEEEEc---cCCEEEEEEec--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccc
Confidence 367999998888888875543 11212222211 1134577888876777999999999999997653 1
Q ss_pred --eeeEEecCC-ccCeeeE---EEcCC--C------CEEEEecCCCcEE
Q 019006 309 --RILYKLPGH-TGSVNES---VFHAT--E------PVIGSCSSDKQIY 343 (347)
Q Consensus 309 --~~~~~~~~h-~~~v~~~---~~~~~--~------~~l~s~s~D~~i~ 343 (347)
++.....-| ...|+.+ .+.|. + +.+..++.+|.|.
T Consensus 212 ~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 212 DPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp TTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred cccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 222222223 3456666 55552 2 2477888898886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.2e-05 Score=42.23 Aligned_cols=37 Identities=38% Similarity=0.664 Sum_probs=33.2
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEe
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWH 85 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~ 85 (347)
++..+.+|...|.++.|++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0036 Score=57.87 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCeEEEEECCC----CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc------------eeecCCC
Q 019006 121 DKTLRAWDVET----GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA------------IQTFPDK 184 (347)
Q Consensus 121 dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------------~~~~~~~ 184 (347)
++.|.+.|..+ +..+.....-......+..++++..+++++..+.++-+.|+.+.+. +...+-.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 35677777776 3233333333444556778888888888888999999999986442 2222223
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
......+|+++++...+-.-|..|..||+..
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3445678899888777788899999999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.023 Score=50.81 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=131.9
Q ss_pred cEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC---CCeEEEEECCCCce
Q 019006 59 AVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP---DKTLRAWDVETGKQ 134 (347)
Q Consensus 59 ~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~ 134 (347)
.-..++.++.+. ..++...++.|.+.|............+. .-..++++++++.+..+.. ++++.+.|..+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 344667788777 55556667889998854332222222232 5578899999988776655 68899999888887
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----ecCCCCceEEEEEcCCCCeEEEEecC---C
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----TFPDKYQITAVSFSDASDKIYTGGID---N 206 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d---g 206 (347)
.......... ....+.+.+....++-..++++.+.|.......+ ..........+.+++++..+++.... +
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 7764433323 5667778877677777789999999976655443 12222345678899999977765443 5
Q ss_pred cEEEEeCCCCceEEE-ecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCC
Q 019006 207 DVKVWDLRKGEVSMT-LQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~ 257 (347)
.+...|..++..... ...-......+.++|+|.++.+.. ..+.+.+.|...
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 899999888765544 221111346688999999888874 447888888764
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.016 Score=52.22 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=70.0
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
...+..++++|++++++.-..+|.+.+.+..-.+...++... ......|.|+-+...++.- +..+.+.....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----- 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG----- 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC-----
Confidence 457999999999999999999999999877655555554433 2345667776543322222 22344432110
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
. .+.|.-++..++..-.|| +||+....-+.+++++.....|
T Consensus 289 --------------~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~~i 329 (410)
T PF04841_consen 289 --------------D---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTENI 329 (410)
T ss_pred --------------C---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHHHH
Confidence 0 122334455556666676 8999887778888876544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.02 Score=47.53 Aligned_cols=198 Identities=14% Similarity=0.264 Sum_probs=104.5
Q ss_pred EecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+.+-...+..|+|+|+.. ++|+....+.|.-.+..++......+.+. .-.-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3556667799999999755 66677778888877775543222334443 346788888888777777678999999884
Q ss_pred CCce------eeeee-----ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC---CCceee-----cC----CCCce
Q 019006 131 TGKQ------IKKMA-----EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ---RGAIQT-----FP----DKYQI 187 (347)
Q Consensus 131 ~~~~------~~~~~-----~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---~~~~~~-----~~----~~~~v 187 (347)
.... ...+. .++.....+++.+.+..++++ -...-..++.+.. ...+.. +. ....+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3211 11121 123335567777766555554 4444555665543 111110 11 22357
Q ss_pred EEEEEcCCCCeEE-EEecCCcEEEEeCCCCceEEEecCCC---------CceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 188 TAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQ---------DMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 188 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.++.++|..+.++ .......|..+| ..|+.+..+.-.. .....|+|.++|+..++ +.-+.+.+|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8899999876555 455677788888 5666554432211 24678999998865555 455544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00053 Score=62.77 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
+.--+++..+.+++.|+.-|.+++|+-..++... ...+-...+...+.+++..++|.|+..|.|.++-+....+ ....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDLD 114 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccce
Confidence 4444556678899999999999999976654332 2223345566778898888889999999999998775222 2222
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce----eeEEecCCccCeeeEEEc
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR----ILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~ 327 (347)
.....+ ......|.++.|++++..|++|...|+|.+-.+.+.. ..+.+..-..+|..+.+.
T Consensus 115 ~~t~~d-~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 115 YVTPCD-KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eecccc-ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 222222 2245789999999999999999999999998877621 112233334566665553
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.041 Score=48.73 Aligned_cols=249 Identities=17% Similarity=0.257 Sum_probs=122.0
Q ss_pred CCCCCeEEEee---------CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 66 NPAGTVIASGS---------HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 66 ~~~~~~l~s~~---------~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
|||++.++... ..+.+.+|++... ....+......+....|+|+|+.++-.. ++.|.+++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 46676655532 2356788888542 2223333356788899999999988774 5789999887764332
Q ss_pred eeeccC------------------cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC---CceEEEEEcCC
Q 019006 137 KMAEHN------------------SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK---YQITAVSFSDA 195 (347)
Q Consensus 137 ~~~~~~------------------~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~ 195 (347)
+...+ ..-..+.+++++..+++.--++..+..+.+..- .... -.+..+.+-..
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~-----~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY-----SPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE-----SSSTESS-EEEEEE--BT
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc-----CCccccCCcccccccCCC
Confidence 21111 011234456666555555545555554432110 0111 12333333222
Q ss_pred CCeEEEEecCC--cEEEEeCCCCceE-EEec----CCCCceeEEEECCCCCEEEEE--cCCC---cEEEEeCCCCCCcCc
Q 019006 196 SDKIYTGGIDN--DVKVWDLRKGEVS-MTLQ----GHQDMITGMSLSPDGSYLLTN--GMDC---KLCIWDMRPYAPQNR 263 (347)
Q Consensus 196 ~~~l~~~~~dg--~i~iwd~~~~~~~-~~~~----~~~~~i~~v~~~~~~~~l~t~--~~d~---~i~~wd~~~~~~~~~ 263 (347)
| ..+- .+.++|+.+++.. .... .-...+..+.|.++++.++.. ..+. .+.+.|.....
T Consensus 152 G------~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~---- 221 (353)
T PF00930_consen 152 G------DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE---- 221 (353)
T ss_dssp T------S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT----
T ss_pred C------CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc----
Confidence 2 2222 3667888877642 2222 234568899999998844433 3332 45556665321
Q ss_pred eeEEEeccccccccceEEEEEC-CCCC-EEEEeeCCCe--EEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWS-PDGS-KVTAGSSDRM--VYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIG 334 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s-~~g~-~l~sgs~dg~--i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~ 334 (347)
+...........-.......|. +++. +|.....||. |++++...+.. ..+....-.|. -+.|++++..|.
T Consensus 222 ~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 222 TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEE
T ss_pred eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEE
Confidence 1111222121222222233343 5554 4445556775 56667666653 35655555664 467788876544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0056 Score=43.22 Aligned_cols=102 Identities=15% Similarity=0.236 Sum_probs=63.1
Q ss_pred EEEEEECC---CC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNP---AG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~---~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
|++|++.. +| +-|++|+.|..|++|+-+ .....+. -.+.|+++.-... .+++.+-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence 56666543 33 579999999999999753 2223333 3457788776655 578889999999998743 233
Q ss_pred eeeeccCcceeEee--cCCCCCCEEEEEcCCCceE
Q 019006 136 KKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 136 ~~~~~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~ 168 (347)
...+.....+.... ...++.+-+++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34433333222222 2233344577787777763
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=57.31 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=89.4
Q ss_pred EEEEecCCcEEEEeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+..-+.+|.|+-++++..+....- ..|... +..-..+..+++|+.+|.|.+|+..........+.. ..+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence 445677888888877654322111 111111 222234578999999999999987532111110000 0011
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEe--cCCCcEEeecC
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSC--SSDKQIYLGEI 347 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--s~D~~i~i~~~ 347 (347)
...-+.-..++.+..++..||.||.|+....+.+.....|. .++.....+..+++++++ |.|..++.|++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 11111223456688899999999999999999888887887 677888888888888888 88888888875
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.029 Score=45.08 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=85.4
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC--------CceeEEEECCCCCEE-EEEcCCCcEEEEe
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--------DMITGMSLSPDGSYL-LTNGMDCKLCIWD 254 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~v~~~~~~~~l-~t~~~d~~i~~wd 254 (347)
+.+.+.-..+|+|+++.-...|-. -.+....+.....+.+|+ .--+.++|+.+.+.+ ++-+.+.+|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667778899988442222211 112222222222233332 223567888765544 4556677887788
Q ss_pred CC--CCCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC-
Q 019006 255 MR--PYAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE- 330 (347)
Q Consensus 255 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 330 (347)
.. .....+ +.+..++..+..-.-..-.++..-+|.+.++.-..++|..+|..+|+++.++.-....|++++|.-.+
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 43 211111 12222222110000011122335578888888888999999999999998887778889999998763
Q ss_pred -CEEEEecC
Q 019006 331 -PVIGSCSS 338 (347)
Q Consensus 331 -~~l~s~s~ 338 (347)
-+..|+..
T Consensus 267 d~~yvT~aa 275 (310)
T KOG4499|consen 267 DILYVTTAA 275 (310)
T ss_pred cEEEEEehh
Confidence 34455543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.02 Score=51.13 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=117.2
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---C-
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---G- 176 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~- 176 (347)
.|+.+.|.++...|+.+-..|.|-+|.....+.-. .+. .......+. . + ...++.-.+-|+..+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~----~-~--~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFR----R-F--SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------------S-----GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCcccc----c-c--cccCCCcceEEehhhCCccc
Confidence 57899999998899999999999998765432211 000 000000000 0 0 111122233343321 1
Q ss_pred -----ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe--cC------CCCceeEEEECC-----C
Q 019006 177 -----AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL--QG------HQDMITGMSLSP-----D 237 (347)
Q Consensus 177 -----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~------~~~~i~~v~~~~-----~ 237 (347)
+...+. ....|++++.+ +-.+++.|..+|.+.|.|+|....++.- .. ....++++.|.. |
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred ccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 111111 25689999987 5679999999999999999987766542 11 234577887752 2
Q ss_pred C---CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE-ECCC---------------------CCEEE
Q 019006 238 G---SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG-WSPD---------------------GSKVT 292 (347)
Q Consensus 238 ~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~---------------------g~~l~ 292 (347)
+ -.|++|...|.+.+|.+.+.. .+.....+..........+..+. ++.+ ..+++
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 2 478888889999999886421 12211111111111122333222 2111 11333
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE-----cCCCCEEEEecCCCcEEeec
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF-----HATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-----~~~~~~l~s~s~D~~i~i~~ 346 (347)
. ..+..++++...+.+...+.....-....+.+ ...+..|++--.||.|++.-
T Consensus 231 v-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 231 V-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp E-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred E-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 3 34568999999887776655433223334445 23567888888999998763
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.05 Score=47.47 Aligned_cols=173 Identities=15% Similarity=0.228 Sum_probs=96.0
Q ss_pred CeEEEEECCCC----ceeeee--eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec--CCCCceEEEEE
Q 019006 122 KTLRAWDVETG----KQIKKM--AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF--PDKYQITAVSF 192 (347)
Q Consensus 122 g~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~v~~~~~ 192 (347)
|.+.++++... ..+..+ ....+.|.+++.. ++.++++. .+.+.+|++...+ ..... .....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999874 222222 2345667777665 23344433 4789999998777 43332 23334555554
Q ss_pred cCCCCeEEEEecCCcEEEEeCCC-CceEEEe--cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC---cC--ce
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRK-GEVSMTL--QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP---QN--RC 264 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~--~~ 264 (347)
. ++++++|.....+.++..+. ......+ ......++++.|-++++.++.+..+|.+.++...+... .. +.
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 4 56899999888888774433 2212222 12234578888876667999999999999998763211 11 22
Q ss_pred eEEEeccccccccceEEE---EECC--CCC------EEEEeeCCCeEEEE
Q 019006 265 VKILEGHQHNFEKNLLKC---GWSP--DGS------KVTAGSSDRMVYIW 303 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~s~--~g~------~l~sgs~dg~i~vw 303 (347)
.....-|. ...+.++ .+.| .+. .++.++.+|.|.+.
T Consensus 216 ~~~~~f~l---g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHL---GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEEC---CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22222222 2334444 4455 222 48888899998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0059 Score=54.50 Aligned_cols=141 Identities=21% Similarity=0.357 Sum_probs=91.7
Q ss_pred CCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCC------CCEEEEEcCCCceEEEeCCCCCc--e---
Q 019006 111 DGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG------PPLVVSGSDDGTAKLWDMRQRGA--I--- 178 (347)
Q Consensus 111 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~s~~~d~~i~iwd~~~~~~--~--- 178 (347)
+.++|+ ++..-..++-.|++.|+.+.....+.. |..+...+.. ..--+.|-.+..|.-||.|-... +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 444556688889999998888776665 2222221111 11223477888999999874332 1
Q ss_pred --eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 179 --QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 179 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+.+..+....|.+-.. ..++++|+.+|.||+||- .+. ....+++-..+|..|..+.+|.+++..+.. .+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eccccccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 1123344566666654 468999999999999996 443 334566777889999999999998877644 5666655
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.095 Score=48.99 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=106.1
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCc-cccee----------EEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGH-KNAIL----------DLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h-~~~v~----------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..++.++.++.|+-.|.... +..-..... ...+. .++. .+..++.++.|+.+.-.|..+|+.+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456666777777777776432 222221110 00111 1122 235677888999999999999998776
Q ss_pred eeccCc---ceeEeecCCCCCCEEEEEc------CCCceEEEeCCCCCceeecCC---C---------------------
Q 019006 138 MAEHNS---FVNSCCPSRRGPPLVVSGS------DDGTAKLWDMRQRGAIQTFPD---K--------------------- 184 (347)
Q Consensus 138 ~~~~~~---~v~~~~~~~~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~~---~--------------------- 184 (347)
...... ......+.-.+. .++.+. .+|.|..+|.++++.+-.+.. .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 543110 000000100122 344443 268899999988876544321 0
Q ss_pred ---------CceEEEEEcCCCCeEEEEecC-----C-----------cEEEEeCCCCceEEEecCCCCceeE--------
Q 019006 185 ---------YQITAVSFSDASDKIYTGGID-----N-----------DVKVWDLRKGEVSMTLQGHQDMITG-------- 231 (347)
Q Consensus 185 ---------~~v~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~~-------- 231 (347)
..-..+++++..+.++.+..+ + .|.-.|+++|+....+|.....+..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 001234677777777766522 2 4666788899888777653222222
Q ss_pred -EEECCCCC---EEEEEcCCCcEEEEeCCCCCC
Q 019006 232 -MSLSPDGS---YLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 232 -v~~~~~~~---~l~t~~~d~~i~~wd~~~~~~ 260 (347)
+.+..+|+ .++.+..+|.+.+.|.++.++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 22334665 677889999999999876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0008 Score=60.92 Aligned_cols=78 Identities=19% Similarity=0.400 Sum_probs=65.2
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccccee-EEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL-DLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
..+.-+.|+|.-.++|.+..+|.|.+..+. ...+..+.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 467889999999999999999999888774 344455665666666 99999999999999999999999999887665
Q ss_pred e
Q 019006 137 K 137 (347)
Q Consensus 137 ~ 137 (347)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.047 Score=44.59 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcc-eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCc-eEE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSF-VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITA 189 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~ 189 (347)
|++++.|+..|.+++.+.++|.+...+...... +... ...+..++..|+.|++....|.++...+...+.... ..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~--~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ--CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE--EcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 678999999999999999999877766543221 2211 122345889999999999999999888877654433 233
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeC
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
-++.+-...++.+...|.+.--..
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceecCCCceEEEEeccceEEEEcc
Confidence 445554445555555565544443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.018 Score=40.76 Aligned_cols=100 Identities=21% Similarity=0.350 Sum_probs=63.7
Q ss_pred eeEEEEcC---CC-CEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 103 ILDLHWTT---DG-SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 103 v~~~~~~~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
|++|++.. +| +.|+.|+.|..||+|+-+ ..+.++.... .+..++.... ..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG--GRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC--CEEEEEecCCEEEEEeCcc--ee
Confidence 45555543 33 579999999999999743 4555554443 3444444433 4688899999999997533 33
Q ss_pred eecCCCCceEEEEEcCCC----CeEEEEecCCcEE
Q 019006 179 QTFPDKYQITAVSFSDAS----DKIYTGGIDNDVK 209 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~ 209 (347)
.....+..++++.+..-. ..|++|=.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444455567776654332 2677887788764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.054 Score=44.93 Aligned_cols=200 Identities=10% Similarity=0.150 Sum_probs=109.5
Q ss_pred cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---
Q 019006 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE--- 217 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 217 (347)
..+..+.+.+....+++.....+.|.-.+.. ++.+..++ .....-.+++..++.++++--.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3466677888777788888888888888864 56666654 33457778887666565555568889999883321
Q ss_pred -e----EEEe--c-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce-eEEEeccc--cccccceEEEEECC
Q 019006 218 -V----SMTL--Q-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC-VKILEGHQ--HNFEKNLLKCGWSP 286 (347)
Q Consensus 218 -~----~~~~--~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~s~ 286 (347)
. ...+ . .++..+..++|+|.++.|+.+-...-..++.+......... ........ ......+..+.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1 1111 1 23345899999998888887766666667766531111111 11111111 11224577888998
Q ss_pred C-CCEEEEeeCCCeEEEEeCCCceeeEEe--cC--Cc-----cCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 287 D-GSKVTAGSSDRMVYIWDTTSRRILYKL--PG--HT-----GSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 287 ~-g~~l~sgs~dg~i~vwd~~~~~~~~~~--~~--h~-----~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
. |.+++....+..|..+| ..|+.+..+ .. |. .-.-.++|.+++.+.++. +-...|.|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 6 45666777888999999 566665543 32 11 135689999998766554 44455554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.083 Score=46.77 Aligned_cols=260 Identities=16% Similarity=0.236 Sum_probs=131.2
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC-------cc---------cceeEEEEcCCCCEEEEecC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG-------HK---------NAILDLHWTTDGSQIISASP 120 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-------h~---------~~v~~~~~~~~~~~l~s~~~ 120 (347)
...+....|+|+|+.+|-.. ++.|++++..+.........| -. +.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45677889999999988775 478999987543111111111 11 12246789999999988764
Q ss_pred C-CeEEEEEC---CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c-----CCCCceEEE
Q 019006 121 D-KTLRAWDV---ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F-----PDKYQITAV 190 (347)
Q Consensus 121 d-g~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~-----~~~~~v~~~ 190 (347)
| ..|+.+.+ ..... ....+........+... ..-.+.++|+.+++.... . ....-+..+
T Consensus 121 d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v 189 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDS------QYPEVESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRV 189 (353)
T ss_dssp E-TTS-EEEEEEESSSTE------SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred CCcCCceEEeeccCCccc------cCCcccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence 4 34444432 11110 00112222222222111 012366788877765321 1 234458889
Q ss_pred EEcCCCCeEEEEe--cCC---cEEEEeCCCCceEEEecCC-CC---ceeEEEEC-CCCC-EEEEEcCCCcEEEEeCCCCC
Q 019006 191 SFSDASDKIYTGG--IDN---DVKVWDLRKGEVSMTLQGH-QD---MITGMSLS-PDGS-YLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 191 ~~~~~~~~l~~~~--~dg---~i~iwd~~~~~~~~~~~~~-~~---~i~~v~~~-~~~~-~l~t~~~d~~i~~wd~~~~~ 259 (347)
.|.+++..++..- .+. .+.++|..++.....+... .. .-..+.|. +++. ++.....||--.|+-+...
T Consensus 190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~- 268 (353)
T PF00930_consen 190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD- 268 (353)
T ss_dssp EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT-
T ss_pred eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc-
Confidence 9999988444332 222 3677788776554333221 11 22345554 5554 4445556775444433221
Q ss_pred CcCceeEEEeccccccccce-EEEEECCCCCEEE-EeeC----CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 260 PQNRCVKILEGHQHNFEKNL-LKCGWSPDGSKVT-AGSS----DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~g~~l~-sgs~----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
....+.+... . -.| ..+.|+++++.|. ++.. ...|+.-++..+..+.++....+.-..+.|+|+++++
T Consensus 269 --~~~~~~lT~G--~--~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 269 --GGKPRQLTSG--D--WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp --SSEEEESS-S--S--S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred --ccceeccccC--c--eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEE
Confidence 1112222211 1 123 2466888877664 4554 2356666777233445665444433699999999877
Q ss_pred EE
Q 019006 334 GS 335 (347)
Q Consensus 334 ~s 335 (347)
+-
T Consensus 343 v~ 344 (353)
T PF00930_consen 343 VD 344 (353)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.07 Score=45.87 Aligned_cols=259 Identities=11% Similarity=0.121 Sum_probs=135.9
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECCCCceeeeeeccCc-ce---
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVETGKQIKKMAEHNS-FV--- 145 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v--- 145 (347)
.++++|.+.. +.+-.+.. +-.-.+..+|+++.++++. ..-.|.+||..+-....++.-... ..
T Consensus 18 rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5777776432 22222221 1223456789999888764 233599999998776665443322 11
Q ss_pred ---eEeecCCCCCCEEE-EEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC-CCceEE
Q 019006 146 ---NSCCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR-KGEVSM 220 (347)
Q Consensus 146 ---~~~~~~~~~~~~~~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~ 220 (347)
.....+.++..+++ -.+..-.|.+.|+..++.+..++...-....-.. ...|.+-+.||.+....+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeE
Confidence 11122222221111 1223344556666666666555443222222222 2457788899999888887 455432
Q ss_pred Ee----cCCCCce-eEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-----c-ccceEEEEECCCCC
Q 019006 221 TL----QGHQDMI-TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-----F-EKNLLKCGWSPDGS 289 (347)
Q Consensus 221 ~~----~~~~~~i-~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~s~~g~ 289 (347)
+. ....+++ ..-.+...+..++=.+.+|.|+--|+.... ......+...... + .+-.--+++++..+
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc--ccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 21 1112222 222333344444446788888888876432 1222222211000 0 01112345666655
Q ss_pred EEEEeeC--------C--CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEE-ecCCCcEEeec
Q 019006 290 KVTAGSS--------D--RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGS-CSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~--------d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~s~D~~i~i~~ 346 (347)
.|.+--. | ..|.++|+.+++++.+++- +..+.++..+.+.+ +|.+ ...++.+.++|
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 5554311 1 2588889999999999873 34578899998875 6644 45689999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.12 Score=50.25 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=71.3
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcce--------eEeecCC---------------CCCCEEEEEcCCCceE
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--------NSCCPSR---------------RGPPLVVSGSDDGTAK 168 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--------~~~~~~~---------------~~~~~~~s~~~d~~i~ 168 (347)
+..|+.++.++.|.-.|..+|+.+.++....... ..+.... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5678888888999999999998877765432210 0000000 1223677888999999
Q ss_pred EEeCCCCCceeecCCCCceE-------------EEEEcC--CCCeEEEEec----------CCcEEEEeCCCCceEEEec
Q 019006 169 LWDMRQRGAIQTFPDKYQIT-------------AVSFSD--ASDKIYTGGI----------DNDVKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~ 223 (347)
-.|.++++.+..+.....+. ...-.| .+..+++|+. +|.|+-+|.++|+....+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998887664433221 001111 1345666643 6889999999999877653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0042 Score=59.92 Aligned_cols=103 Identities=17% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
.+..++.|+..|.+-..|..++-.++..-..-..+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678888888999888876653332222233568999999999999999999999999999999888887777665544
Q ss_pred eecCC--CCCCEEEEEcCCCceEEEeC
Q 019006 148 CCPSR--RGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 148 ~~~~~--~~~~~~~s~~~d~~i~iwd~ 172 (347)
+.+.. .+...++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 33211 11225666666665 5543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=59.07 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=79.5
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce-
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI- 178 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~- 178 (347)
..|.--+++..+++++.|+.-|.+++|+-..+.....-. .....+..++.+ ...+++++|+..|.|-++.+..+.+-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCc
Confidence 344444566678899999999999999876665432211 122333333443 44578899999999999987654321
Q ss_pred ----eec--CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 179 ----QTF--PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 179 ----~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
... .++..|++++|++++..+++|...|+|..-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 2456899999999999999999999998876654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.094 Score=49.53 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=87.6
Q ss_pred ceeEeecCCCCCCEEEEEc-----CCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-----------
Q 019006 144 FVNSCCPSRRGPPLVVSGS-----DDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID----------- 205 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------- 205 (347)
.+.....++++...++... .|+ .+.+++... .. ..+......+.-.|+|++..+++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3444555666655544442 233 444445422 22 222222247778899998877766432
Q ss_pred -CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 206 -NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 206 -g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|.+=-+.........+.............+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 233333444333222 2245699999999999888765 46666632221111100110000011112233577889
Q ss_pred CCCCCEEEEeeCCCeEEEE--eCCCceeeEEecCC--ccCeeeEEEcC
Q 019006 285 SPDGSKVTAGSSDRMVYIW--DTTSRRILYKLPGH--TGSVNESVFHA 328 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vw--d~~~~~~~~~~~~h--~~~v~~~~~~~ 328 (347)
..++.++ ++..++...+| ++.. .....+.+. ...+..++=++
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG-~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDG-SNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCC-ccccccCCCCccCceEEEecCC
Confidence 9999865 55544444444 4432 222222332 44555666555
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=37.95 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=30.0
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
...+..++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456889999999999999999999999998 55443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.21 Score=44.73 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=52.2
Q ss_pred EEEECCCCCeEEEeeCCCcEEE---EeccCCC----eeeEE----EeCcc-cceeEEEEcC-----------CCCEEEEe
Q 019006 62 TMKFNPAGTVIASGSHDRDIFL---WHVHGDC----KNFMV----LKGHK-NAILDLHWTT-----------DGSQIISA 118 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~---w~~~~~~----~~~~~----~~~h~-~~v~~~~~~~-----------~~~~l~s~ 118 (347)
.++.+|+++.||.|..+..+.+ |+..... ..... +.... ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577899999999988887766 6432111 11111 11111 4677776643 45678899
Q ss_pred cCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 119 SPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
-.+|.|++|.. +|..+..-..|...|..+
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~i 114 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKI 114 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEE
Confidence 99999999985 455444433445544443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0024 Score=57.96 Aligned_cols=70 Identities=14% Similarity=0.268 Sum_probs=63.2
Q ss_pred cceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+..+.|+|.-.++|.+..+|.|-+..+. .+.+..++-|...+. +++|.|||++||-|=.||+|.+.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 457788899999999999999999999887 778889998888887 9999999999999999999999884
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.23 Score=42.85 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=129.3
Q ss_pred EEECCCCCeEEEeeC----------CCcEEEEeccCCCeeeE--EEeC-cccc----eeEEEEcCCCCEEEEec--CCCe
Q 019006 63 MKFNPAGTVIASGSH----------DRDIFLWHVHGDCKNFM--VLKG-HKNA----ILDLHWTTDGSQIISAS--PDKT 123 (347)
Q Consensus 63 v~~~~~~~~l~s~~~----------d~~v~~w~~~~~~~~~~--~~~~-h~~~----v~~~~~~~~~~~l~s~~--~dg~ 123 (347)
+..+|+++.+.+++. .-.|.+||...- .... .+.. |... ...++++.|+++++... ---.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 457899998877542 234888987532 2221 2322 1211 23456788888776553 3456
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeec-----CCCC-ceEEEEEcCCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTF-----PDKY-QITAVSFSDAS 196 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~-~v~~~~~~~~~ 196 (347)
|.|-|+...+.+..+...... .+- |.++.-|.+-+.||++....+.. ++..+.. ..+. -+..-.+...+
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~--~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCW--LIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEE--EEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCCCEE--EEE--ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 888888888777666443321 122 22334577778899999888873 3333221 1111 12233344455
Q ss_pred CeEEEEecCCcEEEEeCCCCceEE--EecCC----------CCceeEEEECCCCCEEEEE--------cCCC--cEEEEe
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSM--TLQGH----------QDMITGMSLSPDGSYLLTN--------GMDC--KLCIWD 254 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~----------~~~i~~v~~~~~~~~l~t~--------~~d~--~i~~wd 254 (347)
..++--+.+|.|+--|+....... .+..- .+--.-+++++..+.|.+- ..|+ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 566667889999998886554322 11110 0112336777655555442 1233 355556
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEe-eCCCeEEEEeCCCceeeEEecC
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAG-SSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg-s~dg~i~vwd~~~~~~~~~~~~ 316 (347)
+.. .+.+..+.. ...+.++..+.|.+ +|++. ..++.|.+||..+++++.++++
T Consensus 276 ~~t----~krv~Ri~l-----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKT----HKRVARIPL-----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTT----TEEEEEEEE-----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCC----CeEEEEEeC-----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 553 233333321 23456788888765 66554 4578999999999999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0047 Score=49.21 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=69.9
Q ss_pred CEEEEEcCCCceEEEeCCCCCceee-cCCCCc-e-EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-CceeE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQ-I-TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-DMITG 231 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~-v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~ 231 (347)
.-++.|+.+|.|.+|+......... +..... + ..+....++.+..++..+|.||.|++..++.+-....|+ ..+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 3578899999999998763332221 122212 2 222233445678899999999999998888777666676 55666
Q ss_pred EEECCCCCEEEEE--cCCCcEEEEeCCC
Q 019006 232 MSLSPDGSYLLTN--GMDCKLCIWDMRP 257 (347)
Q Consensus 232 v~~~~~~~~l~t~--~~d~~i~~wd~~~ 257 (347)
......++.++.+ |.|..++.|++.+
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666667777777 7888888888764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.45 Score=44.55 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.+.+++.++.+|.++.+|.++|+.+.+.+-.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4567778888999999999999999877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.39 Score=43.55 Aligned_cols=239 Identities=15% Similarity=0.186 Sum_probs=115.2
Q ss_pred cEEEEEECCCCCeEEEe-eCCC----cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC-----------
Q 019006 59 AVYTMKFNPAGTVIASG-SHDR----DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK----------- 122 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~-~~d~----~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----------- 122 (347)
.+....++|+|++||-+ +..| .++++|+.+.....-.+.. ..-..+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999988754 3333 4899999654221111221 1122389999988876554332
Q ss_pred eEEEEECCCCcee--eeeeccC-cc-eeEeecCCCCCCEEEEEcCCC---ceEEEeCCCC-----CceeecCCCCce-EE
Q 019006 123 TLRAWDVETGKQI--KKMAEHN-SF-VNSCCPSRRGPPLVVSGSDDG---TAKLWDMRQR-----GAIQTFPDKYQI-TA 189 (347)
Q Consensus 123 ~i~iwd~~~~~~~--~~~~~~~-~~-v~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~-----~~~~~~~~~~~v-~~ 189 (347)
.|+.|.+.+.... ..+.... .. ...+..+.++..+++...... .+.+.|+... ......+....+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888765432 2222222 22 334555666655555444433 3666777654 222222222222 33
Q ss_pred EEEcCCCCeEEEEe----cCCcEEEEeCCCCce---EEEecCCCC--ceeEEEECCCCCEEEEEc-CCC--cEEEEeCCC
Q 019006 190 VSFSDASDKIYTGG----IDNDVKVWDLRKGEV---SMTLQGHQD--MITGMSLSPDGSYLLTNG-MDC--KLCIWDMRP 257 (347)
Q Consensus 190 ~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~v~~~~~~~~l~t~~-~d~--~i~~wd~~~ 257 (347)
+... +..++.-+ .++.|...++..... ...+..+.. .+..+.. .+++|+... .++ .|+++|+..
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 3333 34333322 335677777766542 224444544 3455444 455555543 333 678888761
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEE--EeeC--CCeEEEEeCCCcee
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT--AGSS--DRMVYIWDTTSRRI 310 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~--sgs~--dg~i~vwd~~~~~~ 310 (347)
......+.... ...+..+...+++..+. ..|. =+.++.||+.+++.
T Consensus 359 ----~~~~~~~~~p~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 359 ----GKESREIPLPE---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ----TEEEEEEESSS---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ----CcEEeeecCCc---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 11112222111 12334444445554432 2332 25678888887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.51 Score=44.70 Aligned_cols=159 Identities=15% Similarity=0.221 Sum_probs=87.5
Q ss_pred ccEEEEEECCCCCeEEEee------CCCcEEEE--eccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe-EEEEE
Q 019006 58 SAVYTMKFNPAGTVIASGS------HDRDIFLW--HVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT-LRAWD 128 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~------~d~~v~~w--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd 128 (347)
..+...+++|+|+.+|... .|+.-.|| +..+... ....+. ..+.-.|+|+|+.|.+.+.... +++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4677889999998876654 34444455 4322222 223332 3667789999888877653211 11111
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
....+.+.+.++..+.... .....|..+.|+|||..++... ++.|
T Consensus 426 --------------------------------~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 426 --------------------------------DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred --------------------------------cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 0112334444444333222 2234689999999999887655 4677
Q ss_pred EE---EeCCCCceEE----Eec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 209 KV---WDLRKGEVSM----TLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 209 ~i---wd~~~~~~~~----~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
++ -....|.... .+. +-...+.++.|..++..+ ++..++.-.+|.+.
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 76 3433443111 121 222335789999888754 55544444555543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.29 Score=41.50 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe------------
Q 019006 155 PPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL------------ 222 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------ 222 (347)
+..++.|+.+| +.++++..............|..+..-++-+.+++-+ |+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 34677788888 8999884333333333344588898888877766654 499999998654322210
Q ss_pred --cCCCCceeEEE--ECCCCCEEEEEcCCCcEEEEeCCCCCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCC
Q 019006 223 --QGHQDMITGMS--LSPDGSYLLTNGMDCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD 297 (347)
Q Consensus 223 --~~~~~~i~~v~--~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d 297 (347)
......+..++ -...+...+.......|.+|......... ...+.+ .....+..++|. ++.|+.|..+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-----~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-----SLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-----EcCCCcEEEEEe--CCEEEEEeCC
Confidence 01112233333 11234444445556689998876532222 222322 234667888888 6678888765
Q ss_pred CeEEEEeCCCceee
Q 019006 298 RMVYIWDTTSRRIL 311 (347)
Q Consensus 298 g~i~vwd~~~~~~~ 311 (347)
...+.|+.++...
T Consensus 158 -~f~~idl~~~~~~ 170 (275)
T PF00780_consen 158 -GFYLIDLNTGSPS 170 (275)
T ss_pred -ceEEEecCCCCce
Confidence 4788888866543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0076 Score=35.51 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=29.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
...|..++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 4443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=57.34 Aligned_cols=97 Identities=25% Similarity=0.402 Sum_probs=71.4
Q ss_pred EEEEEcCCCceEEEeCCCCCc--eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeE---
Q 019006 157 LVVSGSDDGTAKLWDMRQRGA--IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG--- 231 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--- 231 (347)
.++.|+..|.+...|.+..-. .+......+|++++|+.+|..++.|-.+|.|.+||...++....+..|..+.++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 467788888888887764311 233344578999999999999999999999999999998888777666555444
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeC
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 344556667888777775 5543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.64 Score=41.44 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCeEEEEe-----------cCC-cEEEEeCCC--Cc--eEEEecCCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 186 QITAVSFSDASDKIYTGG-----------IDN-DVKVWDLRK--GE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
....++|+++++.+++-. ..+ .|.+++-.. ++ ....+.......+.|++.+++ |+.+.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 345566776666554432 122 566665432 22 122332223346889998888 444444443
Q ss_pred EEEEeCCCCC-CcCceeEEEeccccc---cccceEEEEECCCCCEEEEeeC-------------------CCeEEEEeCC
Q 019006 250 LCIWDMRPYA-PQNRCVKILEGHQHN---FEKNLLKCGWSPDGSKVTAGSS-------------------DRMVYIWDTT 306 (347)
Q Consensus 250 i~~wd~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~sgs~-------------------dg~i~vwd~~ 306 (347)
+++.|..... ........+.+.... .......+.|.|||.+.++-+. .|.|..++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344543211 110111112211110 1223567889999987665431 1557777776
Q ss_pred CceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.++....-.+ -...+.++|++++.++++-..+
T Consensus 173 g~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 6554322223 3456899999999888764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.2 Score=43.56 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=138.5
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCC-CCEEEEecCCCeEEEEECCCCcee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTD-GSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
|....|-.+..+|.++..||.+..|.++.....+...+ --..++.--.|+.. .+.+++++ |.=..+|.. +++.+
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv 663 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLV 663 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEE
Confidence 33344555678899999999999887753332221111 11223333345443 34455444 443334432 23322
Q ss_pred eeeeccCcceeE-eecCCC-CCCEEEEEcCCCceEEEeCCC--CCceeecCCCCceEEEEEcCCCCeEEEEecC------
Q 019006 136 KKMAEHNSFVNS-CCPSRR-GPPLVVSGSDDGTAKLWDMRQ--RGAIQTFPDKYQITAVSFSDASDKIYTGGID------ 205 (347)
Q Consensus 136 ~~~~~~~~~v~~-~~~~~~-~~~~~~s~~~d~~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 205 (347)
..-..- ..+.. |.+..+ .+..++++. .+.+++.-+.. .-.+++.+-......+++.+....+++.+..
T Consensus 664 ~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 664 YSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred Eeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchh
Confidence 111000 11111 222221 223344443 35566655432 2234445555556666666644444433221
Q ss_pred -----C---cEEEEeCCCCceEEEecC-CCC---ceeEEEECCC-CCEEEEEc----------CCCcEEEEeCCCCCCcC
Q 019006 206 -----N---DVKVWDLRKGEVSMTLQG-HQD---MITGMSLSPD-GSYLLTNG----------MDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 206 -----g---~i~iwd~~~~~~~~~~~~-~~~---~i~~v~~~~~-~~~l~t~~----------~d~~i~~wd~~~~~~~~ 262 (347)
. .++++|-.+-+.....+- ... .|.+..|..| +.++++|. ..|.|.++.+... ..
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~- 819 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NS- 819 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cc-
Confidence 1 256666554443322111 112 3455568877 66777664 2467777766541 11
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
++.. +.....+.+.++. --+|++||.-+ ..|++|++.+++.+..-..|...+..+...-.+..++.|..=+.|
T Consensus 820 --L~~v--~e~~v~Gav~aL~-~fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 820 --LELV--AETVVKGAVYALV-EFNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred --eeee--eeeeeccceeehh-hhCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE
Confidence 1111 1122234444432 13567776543 479999999987777777888888888888888888877765554
Q ss_pred Ee
Q 019006 343 YL 344 (347)
Q Consensus 343 ~i 344 (347)
.+
T Consensus 893 tl 894 (1096)
T KOG1897|consen 893 TL 894 (1096)
T ss_pred EE
Confidence 43
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.34 Score=45.79 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCEEEEecCCC------eEEEEECCCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCC------CceEEEeCCCCCce
Q 019006 112 GSQIISASPDK------TLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMRQRGAI 178 (347)
Q Consensus 112 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~ 178 (347)
+..++.||.++ .+..+|..++........ .......++.. ++.+.++|+.| .++..||.+..+-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 44566666663 577788776633221111 11111122222 23577888888 34667888766633
Q ss_pred eecCCC---CceEEEEEcCCCCeEEEEecCCc-----EEEEeCCCCceEEEecCCCCceeEEEE-CCCCCEEEEEcCCC-
Q 019006 179 QTFPDK---YQITAVSFSDASDKIYTGGIDND-----VKVWDLRKGEVSMTLQGHQDMITGMSL-SPDGSYLLTNGMDC- 248 (347)
Q Consensus 179 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~v~~-~~~~~~l~t~~~d~- 248 (347)
..-+-. .......+ .+...++|+.||. +..||.++.+-...-. ......+.+. .-+|...++||.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCC
Confidence 322211 11111111 4566778888874 7778877654211110 1111111111 12577777887654
Q ss_pred -----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-----eEEEEeCCCceeeEE--ecC
Q 019006 249 -----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-----MVYIWDTTSRRILYK--LPG 316 (347)
Q Consensus 249 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-----~i~vwd~~~~~~~~~--~~~ 316 (347)
.+..||.... .......+.. ...-..++ .-++...+.|+.|+ .|..||..+.+-... +..
T Consensus 440 ~~~l~sve~YDP~t~--~W~~~~~M~~-----~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 440 SNCLNSVECYDPETN--TWTLIAPMNT-----RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred ccccceEEEEcCCCC--ceeecCCccc-----ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 3455665421 1111111110 01111111 23567777888776 377788877653321 221
Q ss_pred CccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 317 HTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 317 h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
....+-. -.-++.+.+.++.||.-++
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccccccE--EEECCEEEEEecccCcccc
Confidence 1222221 2234567778888776443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.64 Score=38.70 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=97.8
Q ss_pred CEEEEEcCCC--ceEEEeCCCCCceeecC--CCCceEEEEEcCCCCeEEE-EecCCcEEEEeCCCCceEEEecCCCCcee
Q 019006 156 PLVVSGSDDG--TAKLWDMRQRGAIQTFP--DKYQITAVSFSDASDKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 156 ~~~~s~~~d~--~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.++-+.+.-| .|+.+|+.+++.....+ ...---.++.. +..++- .=.++...+||..+-+...++.-. ..=+
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGW 133 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGW 133 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecC-Ccce
Confidence 4556655555 68889999888765443 32222223333 334443 346788999999888777766532 3346
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
.++ .++..|+.......+.++|..+++..... ..... ...-..+..+.|- +|...|=--....|...|..+|++
T Consensus 134 GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-~V~~~--g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 134 GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-QVTDN--GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-E-EET--TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred EEE--cCCCEEEEECCccceEEECCcccceEEEE-EEEEC--CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 666 45666776666778999997765432221 11111 1111234555554 566666666677889999999988
Q ss_pred eEEecC------------C---ccCeeeEEEcCCCCEEEEec
Q 019006 311 LYKLPG------------H---TGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 311 ~~~~~~------------h---~~~v~~~~~~~~~~~l~s~s 337 (347)
+..+.- + ..-.+.+||+|....+.-.|
T Consensus 208 ~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 208 VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 775520 1 23469999998876544433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.92 Score=40.50 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=84.2
Q ss_pred CCCeEEEee-CCCcEEEEeccCCCee---eEEEeC---cc----cceeEEEEcCCCCEEEEec--CC----CeEEEEECC
Q 019006 68 AGTVIASGS-HDRDIFLWHVHGDCKN---FMVLKG---HK----NAILDLHWTTDGSQIISAS--PD----KTLRAWDVE 130 (347)
Q Consensus 68 ~~~~l~s~~-~d~~v~~w~~~~~~~~---~~~~~~---h~----~~v~~~~~~~~~~~l~s~~--~d----g~i~iwd~~ 130 (347)
+.++|+..+ ..+.|++.|+..+.+. ...+.. +. ..-..+.-.|+|+.++|+- .+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 6788999998644322 222221 11 1122333457888888762 22 457777777
Q ss_pred CCceeeeeeccC---cceeEeecCCCCCCEEEEEc--------------------CCCceEEEeCCCCCceeecCCC--C
Q 019006 131 TGKQIKKMAEHN---SFVNSCCPSRRGPPLVVSGS--------------------DDGTAKLWDMRQRGAIQTFPDK--Y 185 (347)
Q Consensus 131 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~--~ 185 (347)
+.+......... .+-.++.+.+.. +.+++.. ...++.+||+++++.++++.-. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 655544433221 122233333322 2333332 3468999999999998887543 2
Q ss_pred -ceEEEEEc--CCCCeEEEEec-CCcEEEE-eCCCCc----eEEEecCC-----------------CCceeEEEECCCCC
Q 019006 186 -QITAVSFS--DASDKIYTGGI-DNDVKVW-DLRKGE----VSMTLQGH-----------------QDMITGMSLSPDGS 239 (347)
Q Consensus 186 -~v~~~~~~--~~~~~l~~~~~-dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~i~~v~~~~~~~ 239 (347)
-...+.|. |...+-++++. ...|..| ..+.++ .+.++..- ...|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34456664 44555454443 3334333 323332 22222211 23578999999999
Q ss_pred EEEEEc-CCCcEEEEeCCCCC
Q 019006 240 YLLTNG-MDCKLCIWDMRPYA 259 (347)
Q Consensus 240 ~l~t~~-~d~~i~~wd~~~~~ 259 (347)
+|..+. .+|.|+.||+.+..
T Consensus 325 fLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEEEcccCCcEEEEecCCCC
Confidence 987655 68999999998643
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.32 Score=45.86 Aligned_cols=114 Identities=18% Similarity=0.355 Sum_probs=70.8
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEEC--CCCCEEEEEcCCCcEEEEeCC-----CCCCc
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLS--PDGSYLLTNGMDCKLCIWDMR-----PYAPQ 261 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~--~~~~~l~t~~~d~~i~~wd~~-----~~~~~ 261 (347)
+.-+..++..++-+....+.|||.+.+....+.. ...+.|.++.|. |+++.+++.|..+.|.++--. ...+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334433333343444579999999887544322 345779999885 688999999999999998542 22233
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
...++.+.-.... ..+|.+..|.++|.+++..+ +.+.|+|-.
T Consensus 115 w~~i~~i~i~~~T-~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHT-PHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCC-CCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 3333333221111 13567788999998776554 478888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.85 Score=37.98 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeeccCc-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 103 ILDLHWTTDGSQIISASPDK--TLRAWDVETGKQIKKMAEHNS-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......... +-..++.. +..+..-.-.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 34677867787888888776 699999999987655443322 22223332 23455556788999999999888887
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC-----CCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
.++...+=..++ .++..|+.......|+++|..+-+...+++-. -..++.+.+- +|...|=.=....|...|
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 776655555555 35666776666778999998776555444321 1235556664 344333333344555555
Q ss_pred CCCCCCcCceeEEEec-----------cccccccceEEEEECCCCCEEEEee
Q 019006 255 MRPYAPQNRCVKILEG-----------HQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
..+ +.+...+.- ......+....+||.|.+..|...+
T Consensus 202 p~t----G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PET----GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCC----CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 442 222222210 0001135678899988766554433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.6 Score=39.67 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCEEEEe-cCCC----eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC----------Cce
Q 019006 103 ILDLHWTTDGSQIISA-SPDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD----------GTA 167 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----------~~i 167 (347)
+..+.++|++++++-+ +..| .++++|+.+++.+......... ..+.+.+++..++.+...+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988754 3333 5999999999776543222222 1266666655555555333 236
Q ss_pred EEEeCCCCCce--eec--CCCCc-eEEEEEcCCCCeEEEEec---C-CcEEEEeCCCC----ceEEEecCCCCce-eEEE
Q 019006 168 KLWDMRQRGAI--QTF--PDKYQ-ITAVSFSDASDKIYTGGI---D-NDVKVWDLRKG----EVSMTLQGHQDMI-TGMS 233 (347)
Q Consensus 168 ~iwd~~~~~~~--~~~--~~~~~-v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~i-~~v~ 233 (347)
+.|.+.+...- ..+ +.... ...+..++++++++.... + ..+++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77777654321 222 22223 667888999998875432 2 45788888764 1222222222223 3333
Q ss_pred ECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCC--eEEEEeCCC
Q 019006 234 LSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDR--MVYIWDTTS 307 (347)
Q Consensus 234 ~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg--~i~vwd~~~ 307 (347)
.. .+.+++... ..+.|...++...... .....+..+.. ...+.. +...+.+|+ .-..++ .|+++++..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~--~~~l~~--~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDE--DVSLED--VSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SS--SEEEEE--EEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCC--ceeEEE--EEEECCEEEEEEEECCccEEEEEECCC
Confidence 33 333444332 2356666676643321 11112222211 012222 333444544 444444 588999983
Q ss_pred ceeeEEecCC-ccCeeeEEEcCCCC
Q 019006 308 RRILYKLPGH-TGSVNESVFHATEP 331 (347)
Q Consensus 308 ~~~~~~~~~h-~~~v~~~~~~~~~~ 331 (347)
+.....++.- .+.|..+...++..
T Consensus 359 ~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 359 GKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred CcEEeeecCCcceEEeccCCCCCCC
Confidence 3333333322 33455555555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.9 Score=36.84 Aligned_cols=133 Identities=12% Similarity=0.090 Sum_probs=77.9
Q ss_pred ceeEEEEcCCCCEEEEecCC---------CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe-
Q 019006 102 AILDLHWTTDGSQIISASPD---------KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD- 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd- 171 (347)
+..+-..+|+|++.+-.-.| |.++.|-.. -.+..+...-...+.+.+..+...+.+.-+.+.+|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34455568888884432222 345555332 112222222222333455555555666667777787777
Q ss_pred -CCCCC-----ceeecCC----C-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 172 -MRQRG-----AIQTFPD----K-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 172 -~~~~~-----~~~~~~~----~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
..++. .+..+.. . ...-.++++.+|+..++.-..++|..+|..+|+...++.-....|++++|--
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 33332 2222211 1 1123345566777777777888999999999999999888888999999963
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=37.64 Aligned_cols=159 Identities=11% Similarity=0.172 Sum_probs=97.1
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
.+-...+.++.|+|+.+.|++......-.|+=...|+.++++....- -...+.... ++.++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 34445599999999999999998888888887777888777643210 001112222 2234555555666666655433
Q ss_pred Cce----------eecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE---ecCC-------CCceeEEEE
Q 019006 176 GAI----------QTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT---LQGH-------QDMITGMSL 234 (347)
Q Consensus 176 ~~~----------~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-------~~~i~~v~~ 234 (347)
..+ ....+ ....-.++|+|....|+.+=+.+-+.||....+..... ...+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 11222 34577899999999999988888777776543221111 1111 124677888
Q ss_pred CCC-CCEEEEEcCCCcEEEEeCC
Q 019006 235 SPD-GSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 235 ~~~-~~~l~t~~~d~~i~~wd~~ 256 (347)
++. +..|+-+.+++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 874 5566666777777777765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=44.93 Aligned_cols=33 Identities=6% Similarity=0.010 Sum_probs=22.7
Q ss_pred CCCEEEEeeCCC--eEEEEeCCCceeeEEecCCcc
Q 019006 287 DGSKVTAGSSDR--MVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 287 ~g~~l~sgs~dg--~i~vwd~~~~~~~~~~~~h~~ 319 (347)
+|...++|+.+| .+..||..+.+-...-+.|+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 678888898888 677888877664433444543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.61 Score=44.51 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=75.4
Q ss_pred eeEEEECC--CCCEEEEEcCCCcEEEEeCCCCC-------CcCce----eEEEeccccccccceEEEEEC--CCCCEEEE
Q 019006 229 ITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYA-------PQNRC----VKILEGHQHNFEKNLLKCGWS--PDGSKVTA 293 (347)
Q Consensus 229 i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~s--~~g~~l~s 293 (347)
|+-|.... +...|+.+..||.|.+|.+.... ..... ....+.........++.++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 45554433 34578889999999999653110 00000 000011111234578999998 88899999
Q ss_pred eeCCCeEEEEeCCCc-eeeEE--ecCCccCeeeEEEcCCC------CEEEEecCCCcEEeecC
Q 019006 294 GSSDRMVYIWDTTSR-RILYK--LPGHTGSVNESVFHATE------PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 294 gs~dg~i~vwd~~~~-~~~~~--~~~h~~~v~~~~~~~~~------~~l~s~s~D~~i~i~~~ 347 (347)
++....|.||-.... +.... -..|...|.+|.|-++. ..+++++-.|++.+|+|
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999998855432 11111 11356679999998875 28889999999999875
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.4 Score=40.26 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=88.1
Q ss_pred CCCeEEEeeCCC------cEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCC-C-----eEEEEECCCCce
Q 019006 68 AGTVIASGSHDR------DIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPD-K-----TLRAWDVETGKQ 134 (347)
Q Consensus 68 ~~~~l~s~~~d~------~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g-----~i~iwd~~~~~~ 134 (347)
.+.+++.||.++ .+..||...+ +.....+. +...-.+++.. ++...++||.| | ++..||..+.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 455667777764 4667776543 22222222 22223344444 35677788888 3 466777766553
Q ss_pred ee--eeeccCcceeEeecCCCCCCEEEEEcCCCc-----eEEEeCCCCCceeecCCCCceEEEE-EcCCCCeEEEEecCC
Q 019006 135 IK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDGT-----AKLWDMRQRGAIQTFPDKYQITAVS-FSDASDKIYTGGIDN 206 (347)
Q Consensus 135 ~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg 206 (347)
.. .+...... ......++.+.+.|+.||. +-.||..+.+-...-+........+ ..-.+...++|+.++
T Consensus 362 ~~~a~M~~~R~~---~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSD---FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCcccc---ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 22 11111111 1111123457788888864 5567776554322222211111111 122455666777554
Q ss_pred ------cEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCCc-----EEEEeCC
Q 019006 207 ------DVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCK-----LCIWDMR 256 (347)
Q Consensus 207 ------~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-----i~~wd~~ 256 (347)
.+..||..+++-.. .+..-... ..++. -++...+.||.|+. +..||..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred CccccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCC
Confidence 46788887664222 11111111 12232 25667777777762 5567655
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.1 Score=41.40 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEecCCCCceeEEEECCC----CCEEEEEcCCCcEEEEeCCCC
Q 019006 185 YQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD----GSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~----~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..+..++|......+++.- .+|.+++=|. ..+..| ..|.+++|.|- -..|++......|.+|.+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 3566777774333333322 3344433221 222333 34899999985 335666677889999998632
Q ss_pred CC-cCceeEE-EeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--ceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 259 AP-QNRCVKI-LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--RRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 259 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
.. ..+.+.. .-.....+..-.-.|.|+|....|+.-.....-.++++.. .+....+ .-++-|-+.+|.+||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 11 1111111 1111112222344678999999998876655545555543 3333344 3467899999999998554
Q ss_pred -EecCCCcEEeec
Q 019006 335 -SCSSDKQIYLGE 346 (347)
Q Consensus 335 -s~s~D~~i~i~~ 346 (347)
..|..=.-||||
T Consensus 172 VAvGSsLHSyiWd 184 (671)
T PF15390_consen 172 VAVGSSLHSYIWD 184 (671)
T ss_pred EEeCCeEEEEEec
Confidence 445545577886
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.3 Score=48.21 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred ceeEEEEcCCCCEEE--EecCCCeEEEEECCCCceeee-----ee------ccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 102 AILDLHWTTDGSQII--SASPDKTLRAWDVETGKQIKK-----MA------EHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
.+..+...+|+...+ ..+.+-.|..||+.+...... +. ..........+.+.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555666755433 334455788999875422110 11 11222333444444444566677888888
Q ss_pred EEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCC----CCceeEEEECCCCCEEEE
Q 019006 169 LWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH----QDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 169 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~v~~~~~~~~l~t 243 (347)
+.-+... ..+..++-....++++|+|-|..++.|-..|++.-|... .+....+.+. ...|.+|+|-....+++.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8776533 234455666678999999999999999999999998643 3333333221 357899999877666665
Q ss_pred Ec
Q 019006 244 NG 245 (347)
Q Consensus 244 ~~ 245 (347)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.6 Score=39.95 Aligned_cols=52 Identities=2% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCEEEEeeCC------CeEEEEeCCC-ce--eeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 287 DGSKVTAGSSD------RMVYIWDTTS-RR--ILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 287 ~g~~l~sgs~d------g~i~vwd~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
+|+..+.|+.+ ..+..||..+ .+ .+..++........+++ ++++.+.||.|+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 46666667654 2467899886 33 33344433333333333 678888998887
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.55 Score=42.43 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=87.7
Q ss_pred CCCCeEE-EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-------EEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 194 DASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-------YLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 194 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-------~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.+...++ .|+....++-.|+..|+.+-++.-|.+. -+.|.|+.. .-+.|-.+..|.-.|.|-...... +
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-V 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-e
Confidence 3444444 5667778999999999999888877664 466777542 223444455555555553221111 1
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
...+.... .... ++.......++|.||..|-|++||--..+-..-+++-..+|..+..+.+|+++.+.+..
T Consensus 554 ~esKdY~t--Kn~F-ss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VESKDYKT--KNKF-SSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eeehhccc--cccc-cccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 11111110 1111 12223345699999999999999976666556788889999999999999877665543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.6 Score=36.56 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe-CCCCCCc
Q 019006 186 QITAVSFSDASDKIYTGG---IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD-MRPYAPQ 261 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd-~~~~~~~ 261 (347)
.+.+.++++++..++... ....++++..... ....+.+ ..+..-.|++++...+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 578899999998777655 2334555544322 2222233 2577889999977766666666666663 221111
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEee---CCCeEEEEeCC---Cc------eeeEEecCCccCeeeEEEcCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS---SDRMVYIWDTT---SR------RILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs---~dg~i~vwd~~---~~------~~~~~~~~h~~~v~~~~~~~~ 329 (347)
.... ... ......|..+.+||||..+|.-. .++.|++=-+. .+ ..+.........+.+++|.++
T Consensus 101 -~~~~-v~~--~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 101 -EPVE-VDW--PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -eeEE-ecc--cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111 111 11112688999999999887655 35777776432 22 111222233567899999999
Q ss_pred CCEEEEecCCC
Q 019006 330 EPVIGSCSSDK 340 (347)
Q Consensus 330 ~~~l~s~s~D~ 340 (347)
..+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 99887666543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.33 Score=47.96 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=87.5
Q ss_pred CceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCce-----EEEecCC------CCceeEEEECCCCC-EEEEEcCCCcE
Q 019006 185 YQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEV-----SMTLQGH------QDMITGMSLSPDGS-YLLTNGMDCKL 250 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~-----~~~~~~~------~~~i~~v~~~~~~~-~l~t~~~d~~i 250 (347)
..+..+...+|....++.. .+-.|+.||++.-.. ...+..| .....++.|.|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455566666655544333 333789999875321 1112112 23355677887532 34556678888
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC---c-cCeeeEEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH---T-GSVNESVF 326 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h---~-~~v~~~~~ 326 (347)
++..+...... +.. ..+.....+++|+|.|+.++.|-..|++.-|... .++..++++. + ..|.+|.|
T Consensus 181 ~V~~~~~~~~~---v~s-----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---VTS-----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhh---hcc-----cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 88776532211 111 1234568899999999999999999999998654 3333333322 2 57899999
Q ss_pred cCCCCEEEE
Q 019006 327 HATEPVIGS 335 (347)
Q Consensus 327 ~~~~~~l~s 335 (347)
-....+++.
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 998887764
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.4 Score=38.21 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCeEEEeeCCCcEEEEeccCCC---eeeEEEeCcccceeEEEEcC----CCCEEEEecCCCeEEEEECCC--Cc-----
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTT----DGSQIISASPDKTLRAWDVET--GK----- 133 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~---~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~--~~----- 133 (347)
+...+++||..|.+++|+..... ..+.....-+.+|..++.-. .....++.-.-..+.||.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999985432 11222233456788877532 222333334566788887621 11
Q ss_pred --eeeeeeccCc--ceeEeec---C-CCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 134 --QIKKMAEHNS--FVNSCCP---S-RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 134 --~~~~~~~~~~--~v~~~~~---~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+..+..|.- ....++. . ..+..+++.-+.||.+.+++-+.-.....++.-.-...+.+.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 1222222221 1111111 1 122468888999999999987654434444543344567777778888888888
Q ss_pred CcEEEEeC
Q 019006 206 NDVKVWDL 213 (347)
Q Consensus 206 g~i~iwd~ 213 (347)
..+.-|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88887764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.4 Score=35.07 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=89.0
Q ss_pred CceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE
Q 019006 165 GTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTG-GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
..|+.||+++++.+...+-. ..+..-....-+..++.- =.+|.-..||.++-++...+.- .+.=+.++ .++..|+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGWgLt--~d~~~Li 144 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGWGLT--SDDKNLI 144 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcceeee--cCCcceE
Confidence 35889999988766543322 122211122234444433 3567788888877665544432 22234444 3555566
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe--------
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-------- 314 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-------- 314 (347)
.+....++..-|..++....+..-...+... ..+..+.| -||...|---.+..|...|..+|+.+..+
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~ 220 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKE 220 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchh
Confidence 6666667777776655544433333322111 11222222 24555555555556666677777665433
Q ss_pred ----cCCccCeeeEEEcCCC-CEEEEe
Q 019006 315 ----PGHTGSVNESVFHATE-PVIGSC 336 (347)
Q Consensus 315 ----~~h~~~v~~~~~~~~~-~~l~s~ 336 (347)
..|..-.+.+|+.|++ ++++|+
T Consensus 221 ~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 221 LNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCccccccccccceeecCcCCeEEEec
Confidence 2345567899999998 555555
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.59 Score=42.24 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=88.7
Q ss_pred cCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC----CCCEEEEEcCCCceEEEeCCCCC-ceee--
Q 019006 109 TTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRG-AIQT-- 180 (347)
Q Consensus 109 ~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~-~~~~-- 180 (347)
..+..+|+ .++....++-.|++.|+.+.....+...+....+... ....-+.|-.+..|.-.|.+-.. .+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 34455554 4455567788888989888888777665433221110 01112335556666666765332 2221
Q ss_pred ---cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 181 ---FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 181 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+..+....+..-. ...++++++..|.|++||--.-.....+.+-...|..+..+.+|.++++.+.. .+.+-|++
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 2223334444333 45789999999999999953333334456666778899999999998887754 56677764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.1 Score=36.79 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 225 ~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
-...+..+..+++|++++++.....+.-||--. . ....|.......+..+.|.|++.+.+.+ ..|.|++=+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-----~---~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-----T---TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT------S---S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCC-----c---cceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 345688888899999999988777777887431 1 1111222234678999999998887755 788888887
Q ss_pred -CCCceeeEE--ec--CCccCeeeEEEcCCCCEEEEecCCC
Q 019006 305 -TTSRRILYK--LP--GHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 305 -~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
....+...+ .+ .-.-.+.+++|.+++...|.++...
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 333332222 11 2223479999999988888666543
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.99 Score=40.99 Aligned_cols=102 Identities=15% Similarity=0.250 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
+.|..+..++.|..++..+.+|.+.++=.+.-.....+...+..|+|=.+.-+ ..+++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~------------------ 164 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSST------------------ 164 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCC------------------
Confidence 45788888999999999998886554432211111122222223333333221 22222110
Q ss_pred eEEEeccccccccceEEEEECCCC---CEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDG---SKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.-.+..++|+|+. ..|..-+.|+.||+||......++..++
T Consensus 165 -----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 165 -----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred -----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 1124556688764 6677778888999998877766665544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.8 Score=37.40 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=73.6
Q ss_pred ceeEEEEcCCCCEEEEec-----------CCC-eEEEEECCC--Cc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 102 AILDLHWTTDGSQIISAS-----------PDK-TLRAWDVET--GK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
....|+|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.........+++.+.+ ++++ ....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCCe
Confidence 346788888888776643 223 666665432 22 122332222233445554443 4443 3333
Q ss_pred ceEEEeCCCC-----C---ceeecCC-----CCceEEEEEcCCCCeEEEEec-------------------CCcEEEEeC
Q 019006 166 TAKLWDMRQR-----G---AIQTFPD-----KYQITAVSFSDASDKIYTGGI-------------------DNDVKVWDL 213 (347)
Q Consensus 166 ~i~iwd~~~~-----~---~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~ 213 (347)
..++.|.... + .+..+.. ......+.+.|++...++-+. .|.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 1 1122322 234678999999876554331 144666666
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
..++....-.++. ....++|+++|+.+++-..+
T Consensus 172 dg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcC-CCccceECCCCCEEEEccCC
Confidence 5554433333332 35789999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.2 Score=36.73 Aligned_cols=224 Identities=16% Similarity=0.167 Sum_probs=97.3
Q ss_pred EEcCCCCEEEEe-cCCC--eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eec
Q 019006 107 HWTTDGSQIISA-SPDK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTF 181 (347)
Q Consensus 107 ~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~ 181 (347)
+|.++|++|+-+ ..|| .+.+.|+.+++..+-.............++.+..++. ...+..++-.|+.+.+.. ..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-VKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-EECCCeEEEEECCcCcEEEEEEC
Confidence 467788766554 4455 4666688887654432221111112223344433333 334467888888876543 333
Q ss_pred CCCCceE-EEEEcCCCCeEEEEe---c-------------------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCC
Q 019006 182 PDKYQIT-AVSFSDASDKIYTGG---I-------------------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDG 238 (347)
Q Consensus 182 ~~~~~v~-~~~~~~~~~~l~~~~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~ 238 (347)
+....-. ....+.++..++-.- . ...|...|+++|+....+. ....+.-+-|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 3332211 112233444432110 1 1234555777776544444 34567778899977
Q ss_pred CEEEEEcCCC-----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE-----eeCCCeEEEEeCCCc
Q 019006 239 SYLLTNGMDC-----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA-----GSSDRMVYIWDTTSR 308 (347)
Q Consensus 239 ~~l~t~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s-----gs~dg~i~vwd~~~~ 308 (347)
..+++=+.+| .-+||-++.-... .+.+..+.. ...+.-=-|.|||..|.- ++.+..|.-+|+.++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~--~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRME--GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T--TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCC--CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 7666644332 2366766532222 222222211 223344458999987754 233557888888887
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+...... -..-..+.-++++++++-=|.|
T Consensus 275 ~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 5432211 1234567778888888644444
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=42.63 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcE
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.+.|..+.++++|..++..|..|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~ 108 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV 108 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE
Confidence 4578999999999999988886643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.6 Score=35.29 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=80.6
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEe-CCCCce-EEEe
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWD-LRKGEV-SMTL 222 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~-~~~~ 222 (347)
+...+.++++..+.+....++.-.+|-...+...........+..-.|++++...+....+...+++. ...+.. ....
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 33445555555444444233334444333333333322333677778999866555555556666663 233321 1222
Q ss_pred cC--CCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCc-Ccee-EEEeccccccccceEEEEECCCCCEEEEee
Q 019006 223 QG--HQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQ-NRCV-KILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 223 ~~--~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.. -...|..+.++|||..++... .++.|.+=-+...... ...+ .... ........+..++|.+++.+++.+.
T Consensus 106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~-~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR-VAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE-ecccccCcceeeeecCCCEEEEEeC
Confidence 21 112799999999999887655 3467776654321111 1111 1111 0111124678999999999887766
Q ss_pred CCC
Q 019006 296 SDR 298 (347)
Q Consensus 296 ~dg 298 (347)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=3.1 Score=39.68 Aligned_cols=162 Identities=8% Similarity=0.137 Sum_probs=81.3
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE--EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM--VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
+.+..|.|+.+.. |++-..||++++|++.+...... ........|..+.+..+|-.+++ .+|.+.+-+-.....+
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKL 160 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchh
Confidence 3788999986554 55778999999999986543321 11223344666666656644444 3444444322111122
Q ss_pred eeeeccC-----cceeEeecCCCCCCEEEEEc-CCCceEEEeCCC-CCceeec-CCCCceEEEEEcCCCCeEEEEecCCc
Q 019006 136 KKMAEHN-----SFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQ-RGAIQTF-PDKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 136 ~~~~~~~-----~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
+++..-+ ...+++...+.....++--. ..+ ..++.... ......+ .....+..+.++|..++++-=..+|.
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence 2222211 11111111111111111100 000 01111111 0111112 22356788999999999999999999
Q ss_pred EEEEeCCCCceEEEec
Q 019006 208 VKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~ 223 (347)
|.+-+.+..+...++.
T Consensus 240 i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 240 IWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEecchhhhhhccC
Confidence 9998877666555543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.39 E-value=5.4 Score=38.86 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|..+..+++|++|+..|..|...+.=....-....+......+ .++.+.+... ...-
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i--------------------~Crt~~v~~~--~~~~ 143 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEI--------------------NCRTVPVDER--FFTS 143 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcce--------------------eEEEEEechh--hccC
Confidence 57888899999999998887654442211100001111111111 1122222110 1111
Q ss_pred CCCCceEEEEEcCC---CCeEEEEecCCcEEEEeCCCC
Q 019006 182 PDKYQITAVSFSDA---SDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 182 ~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~ 216 (347)
.....|..+.|+|. +..|++-+.|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 22346788999987 478999999999999999654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.3 Score=40.28 Aligned_cols=97 Identities=18% Similarity=0.334 Sum_probs=65.8
Q ss_pred EEEEEcCCCceEEEeCCCCCcee--ecCCCCceEEEEEc--CCCCeEEEEecCCcEEEEeCCC-----C----ceE--EE
Q 019006 157 LVVSGSDDGTAKLWDMRQRGAIQ--TFPDKYQITAVSFS--DASDKIYTGGIDNDVKVWDLRK-----G----EVS--MT 221 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~-----~----~~~--~~ 221 (347)
..+.-+...++.|||.+.+.... .+.....|..+.|. |+++.+++.+..+.|.+|.-.. . ..+ ..
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44444555679999998776443 23446678888875 7888999999999999985321 1 111 22
Q ss_pred ecCCC-CceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 222 LQGHQ-DMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 222 ~~~~~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
+..|+ .+|.+..|.++|..++.+| +.+.++|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 34444 5799999999987766555 36888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.4 Score=34.06 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=69.0
Q ss_pred CeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---C---eEEEE-ECCCCceeeeeecc
Q 019006 70 TVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---K---TLRAW-DVETGKQIKKMAEH 141 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g---~i~iw-d~~~~~~~~~~~~~ 141 (347)
+.|+.+.....|.+|++. ..+.....+.. -+.|..+.++..|++|+|--.+ . .+|+| |.+..+ ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~------~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK------EE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc------cc
Confidence 455555666779999997 33444444433 3789999999999999986432 2 56665 222110 01
Q ss_pred CcceeE-eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 019006 142 NSFVNS-CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 142 ~~~v~~-~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (347)
...+.. ++-++ +.++..... ...-.+-.+|....+.+++.-|..+.|+.|+. +++.+|.+...
T Consensus 102 ~~~v~vRiaG~~------v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGHR------VTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEcccc------cccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 111110 00000 011111110 01112234455567788888888777777765 46888877543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=5.3 Score=37.64 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCEEEEecCCC------eEEEEECCCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCC-----CceEEEeCCCCCc
Q 019006 111 DGSQIISASPDK------TLRAWDVETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDD-----GTAKLWDMRQRGA 177 (347)
Q Consensus 111 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~ 177 (347)
++..++.||.++ .+..||..+.+.. .+..-. ..-..++. .++.+++.|+.+ ..+..||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 445566666543 4667787665432 111110 00111111 134566677755 3466777765542
Q ss_pred eee--cCCCCceEEEEEcCCCCeEEEEecC------CcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 178 IQT--FPDKYQITAVSFSDASDKIYTGGID------NDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 178 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
... ++....-.+++. -++...+.|+.+ +.+..||..+.+-.. .+..... -.+++. .++..++.||.+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEE-ECCEEEEECCcc
Confidence 221 121111111121 234555566632 357888887653211 1110000 112222 245556666543
Q ss_pred C--------cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCce
Q 019006 248 C--------KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRR 309 (347)
Q Consensus 248 ~--------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~ 309 (347)
+ .+..||.... ... .+...... ......+. .++..++.|+.+ +.+.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~----~W~-~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTN----KWT-ELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCC----cee-eCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2 3777776532 111 11111000 00111122 266777777654 468888887654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.4 Score=36.62 Aligned_cols=146 Identities=15% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCeEEEEecCCcEEEEeCCCCc-----eEEEecCCCCceeEEEECC-----CCCEEEEEcCCCcEEEEeCCCCCCc---C
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGE-----VSMTLQGHQDMITGMSLSP-----DGSYLLTNGMDCKLCIWDMRPYAPQ---N 262 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~v~~~~-----~~~~l~t~~~d~~i~~wd~~~~~~~---~ 262 (347)
...+++|+..|.++||+..... ...+.+ -..+|..+.... +...||. =.-+.+.+|.+...... +
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4588999999999999985432 222222 245777776532 2234444 44567888887432211 1
Q ss_pred c--eeEEEeccccccccceEEEEECC----C-CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 263 R--CVKILEGHQHNFEKNLLKCGWSP----D-GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 263 ~--~~~~~~~~~~~~~~~~~~~~~s~----~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
. .+..+..| .+......+.+.| . -.+|..=|.||.+.+|+-+.-.....+++ ---.--+.|.+.-..+++
T Consensus 115 ~~~~L~~~yeh--~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEH--SLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEEE--ecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 1 11222222 2233334444332 2 35788899999999999876554455554 222234568888888888
Q ss_pred ecCCCcEEeec
Q 019006 336 CSSDKQIYLGE 346 (347)
Q Consensus 336 ~s~D~~i~i~~ 346 (347)
++.+..+...+
T Consensus 192 ~sss~~l~~Yk 202 (418)
T PF14727_consen 192 ASSSWTLECYK 202 (418)
T ss_pred ecCceeEEEec
Confidence 88887776543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.00 E-value=3.7 Score=35.49 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=86.9
Q ss_pred ceeEEEEcCCCCEEEEecC-----C----CeEEEEECC-CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 102 AILDLHWTTDGSQIISASP-----D----KTLRAWDVE-TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
.-..+...|+|.+.++... . ..-.+|.+. .+..++.+..+-...+.+++++++..++++=+..+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3456777888887665443 1 112455444 45555545444556677899999877777777778888887
Q ss_pred CCC--CCc-----eeecC-CCCceEEEEEcCCCCeEEEEecCC-cEEEEeCCCCceEEEecCCCCceeEEEEC-CCCCEE
Q 019006 172 MRQ--RGA-----IQTFP-DKYQITAVSFSDASDKIYTGGIDN-DVKVWDLRKGEVSMTLQGHQDMITGMSLS-PDGSYL 241 (347)
Q Consensus 172 ~~~--~~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~v~~~-~~~~~l 241 (347)
+.. +.. ...+. .....-.++.+.++.+-+++...| .|..|+.. ++....+.-....+++++|- |+.+.|
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 652 111 11111 123344566676776655555554 89999987 88887777665667888885 344555
Q ss_pred EEEc
Q 019006 242 LTNG 245 (347)
Q Consensus 242 ~t~~ 245 (347)
+..+
T Consensus 271 ~iTs 274 (307)
T COG3386 271 YITS 274 (307)
T ss_pred EEEe
Confidence 4443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.1 Score=38.00 Aligned_cols=96 Identities=7% Similarity=0.099 Sum_probs=54.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
.|..+..++.|..++.+|.+|.+.++-....-.-..+... ..+..|...+-+..++ +.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDg-k~~v~CRt~~i~~~~f-ts-------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDG-KSTVNCRTTPVAERFF-TS-------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCC-CceEEEEeecccceee-cc--------------------
Confidence 4667778899999999999997665432211111112211 1122222222211111 11
Q ss_pred CCCCceEEEEEcCCC---CeEEEEecCCcEEEEeCCCCceE
Q 019006 182 PDKYQITAVSFSDAS---DKIYTGGIDNDVKVWDLRKGEVS 219 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 219 (347)
...-.+..++|+|+. ..+..-+.|+.||+||+......
T Consensus 163 s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 163 STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 122345667888875 57888889999999998765444
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.37 Score=39.36 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=49.0
Q ss_pred ECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 234 LSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+..++++|++...+|.+++||+...+.....+....-... .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999864322221111000000 1235678888998998877665 47899998765
Q ss_pred ce
Q 019006 308 RR 309 (347)
Q Consensus 308 ~~ 309 (347)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.51 E-value=4 Score=34.31 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=94.5
Q ss_pred EECCCCCeEEEeeCC-----CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE-----------
Q 019006 64 KFNPAGTVIASGSHD-----RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW----------- 127 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw----------- 127 (347)
.|||+|.+|...-+| |.|-+||..........+..|.-.-..+.|.+||+.++.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 489999998776544 56889988644444455677777778899999999988764 333333
Q ss_pred ---------ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe---------------CCCCCceeecCC
Q 019006 128 ---------DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD---------------MRQRGAIQTFPD 183 (347)
Q Consensus 128 ---------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd---------------~~~~~~~~~~~~ 183 (347)
|..+|..+.+...... . ....-.. +.-+.||+|..=- .+.++.++.+.-
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~-l-----~~lSiRH-ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS-L-----RQLSIRH-LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh-h-----hhcceee-eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence 2222222111100000 0 0000001 1223445543311 011222222221
Q ss_pred --------CCceEEEEEcCCCCeEEEEecC-CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 184 --------KYQITAVSFSDASDKIYTGGID-NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 184 --------~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
..-+-+++.+.....++..+-. +...+||..++..+..-.-. ....++ +...-++..+.+|.+.++.
T Consensus 271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 1126677777766777666654 46789999999866543211 122233 3344456666788888774
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.019 Score=50.97 Aligned_cols=145 Identities=14% Similarity=0.248 Sum_probs=97.0
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F 181 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~ 181 (347)
-....|-+++.-++.++.+-.+..||-. ++..... ..+....+.++...++.+++.+-..+.+.+||+.+...-+. +
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3455688877778888899999999843 3322222 12233334555566667777788889999999975432221 1
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcE
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKL 250 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i 250 (347)
.....-.-+.|++....++.+...|.+.+++..+.+.....-.|...++++++.+.+. .+.++.|..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 1222222367888888889998999999999887766665555888999999998654 4555544433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.4 Score=37.21 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=59.5
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeE-EEE-cCC---------------
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILD-LHW-TTD--------------- 111 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~-~~~-~~~--------------- 111 (347)
....|.+....+.++..+|.+++.|+.+.-|.|.++|+... ..+..++|..++=.. +.- ...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 34456777888999999999999999988999999998532 333444554432111 000 000
Q ss_pred -CC-EEEEecCCCeEEEEECCCCceeeeee
Q 019006 112 -GS-QIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 112 -~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
.. +++-+-.-|.|.||++..+.++..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 01 23345677899999999888876654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.33 Score=27.79 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccEEEEEECCCC---CeEEEeeCCCcEEEEecc
Q 019006 58 SAVYTMKFNPAG---TVIASGSHDRDIFLWHVH 87 (347)
Q Consensus 58 ~~V~~v~~~~~~---~~l~s~~~d~~v~~w~~~ 87 (347)
++|++|+|+|+. .+||-+-.-|.|.++|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 479999999854 588888888999999985
|
It contains a characteristic DLL sequence motif. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.2 Score=37.19 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCCCEEEEeeCC--------CeEEEEeCCCceeeE--EecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 286 PDGSKVTAGSSD--------RMVYIWDTTSRRILY--KLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 286 ~~g~~l~sgs~d--------g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.++...+.|+.+ ..+.+||..+++-.. .++........+. .++++++.||.+
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 355666667643 238889987764321 1111111111122 266777777765
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.7 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCCCEEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 286 PDGSKVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 286 ~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
|++++|+++. .++.|.++|..+++.+.++.- ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677666554 578999999999988877765 334445554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.92 E-value=8 Score=36.05 Aligned_cols=148 Identities=12% Similarity=0.245 Sum_probs=81.6
Q ss_pred ccEEEEEECCCCCeEEEee--CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC----CCEEEEecCCCeEEEEECCC
Q 019006 58 SAVYTMKFNPAGTVIASGS--HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD----GSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~--~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+|+.++|.--.+.+.+.- ..|.+++ ++... -|.-..|..+.|.|- ...|++....+.|.||.+.-
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kf----Gds~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKF----GDSKV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCcccc----CCccE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788889963333444431 1222221 22111 233346899999985 33566777888999998752
Q ss_pred -----Cceeeeeecc-----CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeecCCCCceEEEEEcCCCCeE
Q 019006 132 -----GKQIKKMAEH-----NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 132 -----~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l 199 (347)
.+.+.....+ .-.-..|.|+|... +++.-.....-.+++++... ....+...+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2222111111 11123466676654 44333333344456665332 33445667789999999999977
Q ss_pred EEE-ecCCcEEEEeCC
Q 019006 200 YTG-GIDNDVKVWDLR 214 (347)
Q Consensus 200 ~~~-~~dg~i~iwd~~ 214 (347)
+++ +..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 654 333457888743
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=7.4 Score=34.69 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=96.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccC--cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC--ceE
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHN--SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QIT 188 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~ 188 (347)
..++.+..||.+.-.|.++++.+.+..... ..+..-.....+ .++.++.++.+..+|.+++..+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 356666788888888888887554332221 111111111122 36778889988889988777766655443 111
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC---ceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCc
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD---MITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~ 263 (347)
.-..- ....++.++.++.+.-.|..+++.......-.. .+..--.. ....++.+.. ++.+.-.|.........
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 11111 233445555778888888887877655432210 11100001 1223333333 44344444432221111
Q ss_pred ee--EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 264 CV--KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.. .............+..-... .+.-+..++.++.+...|..+++.+.+.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 00 00000000000000000000 1223466777888999999999999887764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.3 Score=36.34 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=58.0
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC---CCEEE-EeeCC-------
Q 019006 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD---GSKVT-AGSSD------- 297 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~l~-sgs~d------- 297 (347)
.++|+|.|+|+.+++ -..|.|.+++.. .. ....+..+.............++++|+ ..+|. +.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~-~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKD-GS-LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETT-TE-ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCC-Cc-CcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 578999999877665 559999999822 11 111222222111222456789999994 23433 33321
Q ss_pred -CeEEEEeCCCc-------e-eeEEecC---CccCeeeEEEcCCCCEEEEecCCC
Q 019006 298 -RMVYIWDTTSR-------R-ILYKLPG---HTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 298 -g~i~vwd~~~~-------~-~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
..|.-|....+ + ++..++. ..-.-..++|.|++.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24544544332 1 2223333 222346699999999888887654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.99 Score=36.86 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=47.3
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEE-------ec-------CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYK-------LP-------GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-------~~-------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+..++++|++-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 446789999999999999999998876532 12 3456788889998888777665 46777775
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.86 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.0
Q ss_pred ceEEEEECCCC---CEEEEeeCCCeEEEEeCCC
Q 019006 278 NLLKCGWSPDG---SKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 278 ~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~ 307 (347)
.+.++.|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47789999854 4888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=2 Score=38.43 Aligned_cols=118 Identities=14% Similarity=0.249 Sum_probs=69.0
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeee---EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF---MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
...++|.+++|++|.+.||+--.|.+|-+++..++.... ...+..+..|....|+.+ .-++.....| +-+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 456799999999999999999999999999875432221 122334456889999876 4455554444 55665443
Q ss_pred C-ceeeeeeccCcceeEeecCCCCCCEEEEEc-CCCceEEEeCCC
Q 019006 132 G-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQ 174 (347)
Q Consensus 132 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~ 174 (347)
. +.++..+.++..|+-..+.+...-.+++.+ ..+++.=+.+++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 2 223344445555554444443332233322 334443344443
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.03 Score=49.85 Aligned_cols=142 Identities=17% Similarity=0.284 Sum_probs=96.0
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeE
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
....|.+.+..++.++.+..+..||-. ++...... .......|+|..++..++. +-..+.+.+||+.....+. +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--L- 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--L- 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH--H-
Confidence 345567777779999999899999843 33333322 2344566888887776554 4556899999986421110 0
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
...+. ..... ..|++.+..++.|-..|.+.+++..+.+.+.+...|...+...++.+.+..+ .++.|.
T Consensus 113 E~gg~---~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 113 ESGGT---SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred hccCc---chHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 01111 11112 5689999999999999999999998888776765699999999999987543 455443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.74 E-value=15 Score=36.35 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=86.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCccee-------------EeecCC-CCCCEEEEEcC----------CCce
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-------------SCCPSR-RGPPLVVSGSD----------DGTA 167 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~s~~~----------d~~i 167 (347)
+.+|+.++.|+.+.-.|.++|+.+..+..... +. .....+ -....++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCc-eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788899999999999999998876643211 10 000000 01124555532 6889
Q ss_pred EEEeCCCCCceeecCC----------CCc---------eEEEEEcCCCCeEEEEe------------------cCCcEEE
Q 019006 168 KLWDMRQRGAIQTFPD----------KYQ---------ITAVSFSDASDKIYTGG------------------IDNDVKV 210 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~----------~~~---------v~~~~~~~~~~~l~~~~------------------~dg~i~i 210 (347)
+-+|.++++.+-.+.. ... -...++++..+.++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999887654421 000 12345566555555422 1234666
Q ss_pred EeCCCCceEEEecCCCCceeE---------EEECC-CCC---EEEEEcCCCcEEEEeCCCCC
Q 019006 211 WDLRKGEVSMTLQGHQDMITG---------MSLSP-DGS---YLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 211 wd~~~~~~~~~~~~~~~~i~~---------v~~~~-~~~---~l~t~~~d~~i~~wd~~~~~ 259 (347)
.|.++|+....++.....+.+ +.+.. +|+ .++.++.+|.+.+.|.++.+
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 788888887777652221221 22222 453 78888999999999987543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.47 E-value=7.8 Score=32.70 Aligned_cols=226 Identities=15% Similarity=0.217 Sum_probs=119.0
Q ss_pred EEEEECCCC-CeEEEeeCCCc-EEEEeccCCCeeeE-------EEeCcccceeEEEEcCCCCEEEEecCC-----CeEEE
Q 019006 61 YTMKFNPAG-TVIASGSHDRD-IFLWHVHGDCKNFM-------VLKGHKNAILDLHWTTDGSQIISASPD-----KTLRA 126 (347)
Q Consensus 61 ~~v~~~~~~-~~l~s~~~d~~-v~~w~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~i 126 (347)
+.|.|+|.. .-++-+-.-|+ ..++|..+...+.. .+-+|. .|||||.+|+..-.| |.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEE
Confidence 456777754 44556666665 45677754332221 122332 489999999876443 78999
Q ss_pred EECCCC-ceeeeeeccCcceeEeecCCCCCCEEEEEc-----------------CCCceEEEeCCCCCceeec--C---C
Q 019006 127 WDVETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS-----------------DDGTAKLWDMRQRGAIQTF--P---D 183 (347)
Q Consensus 127 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~d~~i~iwd~~~~~~~~~~--~---~ 183 (347)
||...+ ..+.++..|.-....+.+..++..++++.+ ..-.+.+.|..++..++.. + .
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 998753 345556555544455566666654444332 1122334454555555433 2 1
Q ss_pred CCceEEEEEcCCCCeEEEEecCCc-----EEEEeCCCCceEEEecC-------CCCceeEEEECCCCCEEEEEc-CCCcE
Q 019006 184 KYQITAVSFSDASDKIYTGGIDND-----VKVWDLRKGEVSMTLQG-------HQDMITGMSLSPDGSYLLTNG-MDCKL 250 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~v~~~~~~~~l~t~~-~d~~i 250 (347)
...+..++..+++...+.+-..|. -.+=-.+.++...-+.. -...|-+++.+.+..+++..+ ..+..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 235777788877766655443332 01111122222222211 134577888877666665555 44577
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
.+||..+. ..+..-. ..-++-.-+...-++..|.+|.+.++.
T Consensus 305 vi~da~tG----~vv~~a~--------l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATG----AVVSEAA--------LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCC----cEEeccc--------ccccccceeccCceEEecCCceEEecc
Confidence 89998743 2221110 000111224445566667778888774
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.11 E-value=8.9 Score=32.73 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=56.7
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC------CCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS------PDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.+..-|.|-+||.. ++.++.+... ..-...+.++.. ..|.+|+---.||+|..||..+++.+-.+..
T Consensus 217 ~G~G~G~VdvFd~~-----G~l~~r~as~--g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 217 AGAGLGYVNVFTLN-----GQLLRRVASS--GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred cCCCcceEEEEcCC-----CcEEEEeccC--CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 34445688888875 3344433211 112334555543 3577888777899999999999987777765
Q ss_pred Ccc------CeeeEEEcCC------CCEEEEecCC
Q 019006 317 HTG------SVNESVFHAT------EPVIGSCSSD 339 (347)
Q Consensus 317 h~~------~v~~~~~~~~------~~~l~s~s~D 339 (347)
-.+ .++.++|... +.+..+++-|
T Consensus 290 ~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 290 PDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred CCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 433 4688899773 3466666644
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.8 Score=40.97 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=43.5
Q ss_pred CCCCeEEEeeCCCcEEEEeccC---CCeeeE--EEeC--------------------cccceeEEEEcC----CCCEEEE
Q 019006 67 PAGTVIASGSHDRDIFLWHVHG---DCKNFM--VLKG--------------------HKNAILDLHWTT----DGSQIIS 117 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~---~~~~~~--~~~~--------------------h~~~v~~~~~~~----~~~~l~s 117 (347)
++...++.+..||.+....... ...... .+.. -...+..++.+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888888887776543 111111 0000 112345566665 6789999
Q ss_pred ecCCCeEEEEECCCCceeeee
Q 019006 118 ASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.+.|+++|+||+.+++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999886554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.6 Score=45.12 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=87.6
Q ss_pred EecCccccEEEEEECC-CCCeEEEeeCCCcEEEEecc---CCCeee---EEEeCcccceeEEEEc---CCCCEEEEecCC
Q 019006 52 LLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVH---GDCKNF---MVLKGHKNAILDLHWT---TDGSQIISASPD 121 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~---~~~~~~---~~~~~h~~~v~~~~~~---~~~~~l~s~~~d 121 (347)
+++|-.+.|-.+.|.. +-..++ ..-|.+++|+++ |+..+- .........+.-+.|. ++..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3556777888888853 222222 233778999874 222111 1112222233334444 455666666777
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
+.+++...+.... .-+..|...+.+.++...+-..+. ..+|||..|+.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~-------------------------------~lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLA-------------------------------SLSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhe-------------------------------eeCCCCcEEEE
Confidence 8888776654322 223335555544443322211111 15777778888
Q ss_pred EecCCcEEEEeC-----CCCceEEEecCCC-CceeEEEECCCC---------CEEEEEc-CCCcEEEEeCCC
Q 019006 202 GGIDNDVKVWDL-----RKGEVSMTLQGHQ-DMITGMSLSPDG---------SYLLTNG-MDCKLCIWDMRP 257 (347)
Q Consensus 202 ~~~dg~i~iwd~-----~~~~~~~~~~~~~-~~i~~v~~~~~~---------~~l~t~~-~d~~i~~wd~~~ 257 (347)
+..||.++.|-+ +...+.+..+.|. .+-.|.-++.+. .++++++ .+..+++|....
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 888877666643 3334455556665 222222233222 1344443 456788997653
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.78 E-value=3 Score=40.10 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCceEEEeCCC-------C-----C--------ceeecCCCCceEEEEEc--CCCCeEEEEecCCcEEEE
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQ-------R-----G--------AIQTFPDKYQITAVSFS--DASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~-------~-----~--------~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 211 (347)
+...|+.+.+||.|.+|.++. . . +...+.....+..++++ ...+.+|+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 346788999999999996521 1 0 11111223467888988 778889999988888888
Q ss_pred eCCCC--ceEE-EecCCCCceeEEEECCCC---C---EEEEEcCCCcEEEEeC
Q 019006 212 DLRKG--EVSM-TLQGHQDMITGMSLSPDG---S---YLLTNGMDCKLCIWDM 255 (347)
Q Consensus 212 d~~~~--~~~~-~~~~~~~~i~~v~~~~~~---~---~l~t~~~d~~i~~wd~ 255 (347)
-.... +... .-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54432 1111 111245678899997643 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.62 E-value=10 Score=32.64 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
...+..+..++++.+++++..-....-||.-... ..+.. .-...|..|.|.|++...+.+ ..|.|++=+...
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~----- 216 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD----- 216 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-----
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCCCEEEEe-CCcEEEEccCCC-----
Confidence 3467778888999888877665556677753221 22222 234679999999998776654 778888876211
Q ss_pred ceeEEEeccccc---cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec---CCccCeeeEEEcCCCCEEEEe
Q 019006 263 RCVKILEGHQHN---FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP---GHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 263 ~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~ 336 (347)
........... ..-.+..++|.+++...++|+.. .+ +...+.|+--.+.+ .-...+..+.|.++++-+ ..
T Consensus 217 -~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~l 292 (302)
T PF14870_consen 217 -DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VL 292 (302)
T ss_dssp -EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE
T ss_pred -CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EE
Confidence 01111111111 11237899999998888877765 33 33444555444433 224567888887765544 45
Q ss_pred cCCCcEE
Q 019006 337 SSDKQIY 343 (347)
Q Consensus 337 s~D~~i~ 343 (347)
+.||.+.
T Consensus 293 G~~G~ll 299 (302)
T PF14870_consen 293 GQDGVLL 299 (302)
T ss_dssp -STTEEE
T ss_pred CCCcEEE
Confidence 5666553
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=12 Score=32.91 Aligned_cols=151 Identities=10% Similarity=0.053 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEE-EeCCCCceEEEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKV-WDLRKGEVSMTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
..+..+.+.+++.+++ .+..|.+.. +|- .++.-... ..-...++++.+.++++.++.+ ..|.+.+=.... .
T Consensus 173 g~~~~i~~~~~g~~v~-~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~----G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVA-VSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD----L 245 (334)
T ss_pred ceEEEEEECCCCeEEE-EeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC----C
Confidence 4578888888765554 444555443 221 12211112 1223568899999988876654 456654321111 1
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCeeeEEEcCCCCEEEEecCC
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
................+..+.+.|++..+++| .+|.+.. ....++.-...+. -......+.|..+++.++ ++..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~ 322 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQR 322 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCC
Confidence 11111100000011246678888988766655 4565553 4444444333322 223577888887776655 6666
Q ss_pred CcEEee
Q 019006 340 KQIYLG 345 (347)
Q Consensus 340 ~~i~i~ 345 (347)
|.|.-+
T Consensus 323 G~il~~ 328 (334)
T PRK13684 323 GVLLRY 328 (334)
T ss_pred ceEEEe
Confidence 666543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.23 Score=47.80 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred CcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeE
Q 019006 248 CKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 324 (347)
|.+.+||+........+ ++...... .....|.-|-|-+...++..+-.++.+++....+... .-+++|+..+.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~g-s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYG-SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCC-CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 56788887643221111 12221111 1123344444555678888898899988876554322 3455688777766
Q ss_pred EE-----------cCCCCEEEEecCCCcEEeecC
Q 019006 325 VF-----------HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~-----------~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+| +|||..+|.+..||.+.-|.+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 64 888888888888888776653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=16 Score=34.03 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=60.5
Q ss_pred CCCeEEEeeCCC-----cEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCC--CeEEEEECCCCceeeeee
Q 019006 68 AGTVIASGSHDR-----DIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPD--KTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 68 ~~~~l~s~~~d~-----~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~ 139 (347)
++.+++.||.++ ++..||...+ +.....+...... .+++ .-++...+.||.+ ..+..||..+++-.. +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CC
Confidence 456667787653 4566766432 1111111111111 1122 2356666677654 357778866543211 11
Q ss_pred ccCcceeEeecCCCCCCEEEEEcCCC---ceEEEeCCCCCceee--cCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 140 EHNSFVNSCCPSRRGPPLVVSGSDDG---TAKLWDMRQRGAIQT--FPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
.-.......+....++.+.+.|+.++ .+..||.++..-... .+.. .....+.+ ++...+.| |.+.+||.
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecC
Confidence 11101100011111234666666543 456788765433221 1111 11122222 33444444 35778888
Q ss_pred CCCc
Q 019006 214 RKGE 217 (347)
Q Consensus 214 ~~~~ 217 (347)
++++
T Consensus 423 ~~~~ 426 (480)
T PHA02790 423 SSNT 426 (480)
T ss_pred CCCc
Confidence 7653
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=11 Score=32.05 Aligned_cols=165 Identities=12% Similarity=0.135 Sum_probs=98.8
Q ss_pred CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS 219 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 219 (347)
...+.++.+++....++ +..+...-.++=..+++.+.+++-. ...-.+.+...+.++++--.++.++++.+......
T Consensus 85 ~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 33467778888776554 4455566666656677888877643 23445666666666666667788888876554222
Q ss_pred -------EEec--CC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc---ccccceEEEEECC
Q 019006 220 -------MTLQ--GH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH---NFEKNLLKCGWSP 286 (347)
Q Consensus 220 -------~~~~--~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~ 286 (347)
..+. .+ +.-...++|.|....|+.+=+-+-+.||.+... +..-.......+.. -+-..+..+.|++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~-~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS-PSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC-CcccccccccCcccccceEeeccccceecC
Confidence 1221 12 334678999999988888877777777766521 11111111111110 1123566777876
Q ss_pred -CCCEEEEeeCCCeEEEEeCCCc
Q 019006 287 -DGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 287 -~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
.+.+|+-+..++.+.-.|....
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCC
Confidence 4566777777888888876543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.12 E-value=2 Score=40.69 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.2
Q ss_pred ceEEEEECC----CCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 278 NLLKCGWSP----DGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 278 ~~~~~~~s~----~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
.....+.++ +..+|++-+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 344555666 7789999999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=23 Score=34.62 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=61.6
Q ss_pred ceeEEEEcCCCCEEEEec-CCC----eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC-----CceEEEe
Q 019006 102 AILDLHWTTDGSQIISAS-PDK----TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-----GTAKLWD 171 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd 171 (347)
.+..+.|+||+++|+.+. .+| .+++.|+.+++.+........ ..+++.+++..++++...+ ..+..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999887653 223 588889988764322221211 2356666665566654432 3566677
Q ss_pred CCCC--CceeecCCC-CceE-EEEEcCCCCeEEEEe---cCCcEEEEeC
Q 019006 172 MRQR--GAIQTFPDK-YQIT-AVSFSDASDKIYTGG---IDNDVKVWDL 213 (347)
Q Consensus 172 ~~~~--~~~~~~~~~-~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~ 213 (347)
+.+. .....+... .... ....+.++.+++..+ .++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7766 222223221 1222 334455777665433 3457888884
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=89.12 E-value=13 Score=33.77 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.6
Q ss_pred cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 319 GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 319 ~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..|..++..+..+.+.+...+|.|.+|++
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 34999999999999999999999999985
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.2 Score=23.57 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.0
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
..++.++.+|.++.+|..+|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36788889999999999999887654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=88.71 E-value=16 Score=32.06 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=34.0
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEE----eCcccceeEEEEcCC
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVL----KGHKNAILDLHWTTD 111 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~----~~h~~~v~~~~~~~~ 111 (347)
..++|+|.|+|++|++ ...|.|++++..+.. ..+..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 4678999999988765 559999999844332 122222 123456789999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.6 Score=37.74 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=91.1
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE-eC-cc---ccee-EEEEcCCCCEEEEecCCCeEEEE
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KG-HK---NAIL-DLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-~~-h~---~~v~-~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
..-...|..+-..|+|+.|..-+. .++.+++++...-....+ .. .. ..|+ ++.....|.-++.++.||.|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 334456677788999998876655 678888876432211111 11 01 1122 22223345668888999999888
Q ss_pred -ECCCCc-----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 128 -DVETGK-----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 128 -d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
|+..+. .++.+.-....+..... ....+-+++-+..|++.++.....+.+-..+.-....-++++|.+.++++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 544322 12223222333333322 33345577778888888776544433322222224566789998888775
Q ss_pred EecCCcEEEEeCCCCce
Q 019006 202 GGIDNDVKVWDLRKGEV 218 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~ 218 (347)
- ..|+++++.+++...
T Consensus 375 e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 375 E-DQGKIRLAQLENRNP 390 (733)
T ss_pred e-cCCceEEEEecCCCC
Confidence 3 346788888766543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.19 E-value=17 Score=31.79 Aligned_cols=148 Identities=14% Similarity=0.230 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCeEEEEecCCc------EEEEeCCC--C--ceE-----EEecCCCC--------ceeEEEECCCCCEEE
Q 019006 186 QITAVSFSDASDKIYTGGIDND------VKVWDLRK--G--EVS-----MTLQGHQD--------MITGMSLSPDGSYLL 242 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~v~~~~~~~~l~ 242 (347)
.++.+.+.+++..+++.+.+|. ++.+++.. + ..+ ..+..-.+ ...+|++.+++.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4677788766667777777777 66665543 1 000 11111111 345788877888888
Q ss_pred EEcCC------CcEEEEeCCCCCCcCce--eEEEec-----cccccccceEEEEECCCCCEEEEeeC-----CC--e---
Q 019006 243 TNGMD------CKLCIWDMRPYAPQNRC--VKILEG-----HQHNFEKNLLKCGWSPDGSKVTAGSS-----DR--M--- 299 (347)
Q Consensus 243 t~~~d------~~i~~wd~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~s~~g~~l~sgs~-----dg--~--- 299 (347)
+.-.+ ..|..++.. ....... ...+.. .....+..+=.++++|||+.|+++.. |+ .
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 77666 778888754 2211111 000100 11112345678899999996666543 22 1
Q ss_pred ----EEE--EeCCC-----ceeeEEecC-----CccCeeeEEEcCCCCEEE
Q 019006 300 ----VYI--WDTTS-----RRILYKLPG-----HTGSVNESVFHATEPVIG 334 (347)
Q Consensus 300 ----i~v--wd~~~-----~~~~~~~~~-----h~~~v~~~~~~~~~~~l~ 334 (347)
+++ ||..+ ++..+.+.. ....|.++.+.+++++|+
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 444 45443 223445543 456789999999998765
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.16 E-value=21 Score=32.77 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce--EEEec-----CCCCceeEEEECCCC
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV--SMTLQ-----GHQDMITGMSLSPDG 238 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~i~~v~~~~~~ 238 (347)
....++|.|++..|++--..|.|++++...+.. ...+. ....-...|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467889999987665544469999997654432 11111 124557899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.63 E-value=13 Score=29.95 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=35.1
Q ss_pred CeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEc
Q 019006 197 DKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
..|+.+.....|.+|++... +...++.. -+.|..+.++..|+|++|-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 45555566778999998833 34445543 36799999999999999964
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.39 E-value=13 Score=38.17 Aligned_cols=136 Identities=10% Similarity=0.214 Sum_probs=76.4
Q ss_pred CCCeEEEEECCCCceeeeeeccCcceeEeecCC--------CCCCEEEEEcCCCceEEEeCC----CCCce-----eec-
Q 019006 120 PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR--------RGPPLVVSGSDDGTAKLWDMR----QRGAI-----QTF- 181 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~s~~~d~~i~iwd~~----~~~~~-----~~~- 181 (347)
-|..+.+|+.+++.....+..-...|..+.... .-..+++.++. -.|.++-+. +...- ..+
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence 578899999998665555544333333322211 11233443332 234444322 11110 111
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEE--EeCCCC---c-e----------------EEEec-CCCCceeEEEECCCC
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKV--WDLRKG---E-V----------------SMTLQ-GHQDMITGMSLSPDG 238 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~---~-~----------------~~~~~-~~~~~i~~v~~~~~~ 238 (347)
.....|+++....+|+.|++| .||.|+= |....+ + + ...+. .+.++|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 124568888877777666655 4554432 111111 1 1 11233 567789999999888
Q ss_pred CEEEEEcCCCcEEEEeCCC
Q 019006 239 SYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~~ 257 (347)
+.+.+-+..++|..||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999975
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=35 Score=33.45 Aligned_cols=192 Identities=11% Similarity=0.077 Sum_probs=89.9
Q ss_pred ccEEEEEECCCCCeEEEeeC-CC----cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC------CeEEE
Q 019006 58 SAVYTMKFNPAGTVIASGSH-DR----DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD------KTLRA 126 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~-d~----~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~i 126 (347)
-.+..+.++|+|++||-+-. +| .+++-++.+.......+.+ .-..++|++|++.|+-...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999998775433 23 3667776432111111111 11458999998876655432 35777
Q ss_pred EECCCC--ceeeeeeccCccee-EeecCCCCCCEEEEEc--CCCceEEEeCC--CCCceeecCCCCc-eEEEEEcCCCCe
Q 019006 127 WDVETG--KQIKKMAEHNSFVN-SCCPSRRGPPLVVSGS--DDGTAKLWDMR--QRGAIQTFPDKYQ-ITAVSFSDASDK 198 (347)
Q Consensus 127 wd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~~--~d~~i~iwd~~--~~~~~~~~~~~~~-v~~~~~~~~~~~ 198 (347)
+++.++ +...-+........ ......++..+++... .++.+.+++.. .+......+.... ...+. +. +..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCE
Confidence 888877 22222222211111 2222223333443332 33568888843 2332222222222 12222 22 244
Q ss_pred EEEEecC----CcEEEEeCCCCceEEEecCC-C-CceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 199 IYTGGID----NDVKVWDLRKGEVSMTLQGH-Q-DMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 199 l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~-~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
++.-+.. ..|...++........+..+ . ..|..+.+. .+..+++...++.-+++-+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 4433322 23444455421111233333 2 367778876 3344555555665555543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.23 E-value=18 Score=30.04 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=75.3
Q ss_pred EEEeCCCCCceee-cCCCCceEEEEEcCCCCeEEEEec-C--CcEEEEeCCC--CceE-EE----ecCCCCceeEEEECC
Q 019006 168 KLWDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGI-D--NDVKVWDLRK--GEVS-MT----LQGHQDMITGMSLSP 236 (347)
Q Consensus 168 ~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~--~~~~-~~----~~~~~~~i~~v~~~~ 236 (347)
.+||+.+.+.... .....-+.+-.+-++|..+.+|+. + ..+++|+... ..+. .+ +.. ...=-++..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceECC
Confidence 4688876543211 122223444557789999988874 3 3588887543 0111 11 111 11112233457
Q ss_pred CCCEEEEEcCCC-cEEEEeCCCCCCcCceeEEEeccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 237 DGSYLLTNGMDC-KLCIWDMRPYAPQNRCVKILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 237 ~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
||+.|+.||.+. +.-+|.-............+.... ......--.+-..|+|++++.+..+ -.+||..+.+.+.++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999998874 334444321111111111111100 0001112234457999999988875 456688888776666
Q ss_pred cCCc
Q 019006 315 PGHT 318 (347)
Q Consensus 315 ~~h~ 318 (347)
+.-.
T Consensus 206 P~lP 209 (243)
T PF07250_consen 206 PDLP 209 (243)
T ss_pred CCCC
Confidence 5433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.16 E-value=39 Score=33.81 Aligned_cols=136 Identities=12% Similarity=0.081 Sum_probs=74.3
Q ss_pred CceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC--CCCceeEEEECCCC----
Q 019006 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--HQDMITGMSLSPDG---- 238 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~~~~---- 238 (347)
..|++++-. ...........++....+.+...++.++.++.+...++..+. .+.... -...|.|+.++|-+
T Consensus 470 ~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 346666644 222222222334444444444566777776767666665544 111111 13468899999742
Q ss_pred --CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 239 --SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 239 --~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+.++.|.++..+.+--.-+ ....+....-.....+..+.-..+--|..+|.++..||.+..|-+.
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~p---d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLP---DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceEEEEEeecceEEEEEECC---CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2677887776555443221 1111111111112334566666777789999999999998877543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.73 E-value=26 Score=31.30 Aligned_cols=187 Identities=18% Similarity=0.363 Sum_probs=104.2
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-Ccccce---eEEEEcCCCCE--EEEec-CC---CeEEEEECCCC-cee
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAI---LDLHWTTDGSQ--IISAS-PD---KTLRAWDVETG-KQI 135 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v---~~~~~~~~~~~--l~s~~-~d---g~i~iwd~~~~-~~~ 135 (347)
|...+++...+++-+.+|++.++. +..+. +.-..| ..+.+ +|+. |+.++ .+ .+|++|.+... ..+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~--lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE--LQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E--EEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE--EEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 445788888899999999997653 22332 211111 22222 3433 33343 22 46999977531 123
Q ss_pred eeeecc-------CcceeEeecC--C-CCCCEEEEEcCCCceEEEeCC---CC----CceeecCCCCceEEEEEcCCCCe
Q 019006 136 KKMAEH-------NSFVNSCCPS--R-RGPPLVVSGSDDGTAKLWDMR---QR----GAIQTFPDKYQITAVSFSDASDK 198 (347)
Q Consensus 136 ~~~~~~-------~~~v~~~~~~--~-~~~~~~~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~ 198 (347)
..+... ...+..+|.. + .+..+++....+|.+..|.+. .+ ..++.|....++-.+..+.....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 332211 1123444442 2 233466677788988888764 22 23566666678889999998999
Q ss_pred EEEEecCCcEEEEeCCCC-----ceEEEecC--CCCceeEEEEC--CCC-CEEEE-EcCCCcEEEEeCCC
Q 019006 199 IYTGGIDNDVKVWDLRKG-----EVSMTLQG--HQDMITGMSLS--PDG-SYLLT-NGMDCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~-----~~~~~~~~--~~~~i~~v~~~--~~~-~~l~t-~~~d~~i~~wd~~~ 257 (347)
|+.+-++--|.-|+.+.. +.+....+ ....|..|++- .++ .||+. .-.+++..+||...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999988888887632 22222222 23567788774 333 35554 44577999999763
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.56 E-value=17 Score=29.21 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=56.1
Q ss_pred CCCEEEEecCC--CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE
Q 019006 111 DGSQIISASPD--KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188 (347)
Q Consensus 111 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 188 (347)
+|.++.+.+.- ..|++||+.+++.+.+..-....+..--....+..+..-.-.+|.-..+|.++-+.+..++...+-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 34555665543 4699999999887655433211111100011122233344567888888888777777666555545
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLR 214 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~ 214 (347)
.++. ++..++.+....+++.-|.+
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHH
Confidence 5543 34445555444456665654
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=85.04 E-value=2.7 Score=23.22 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=22.8
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.+..++.+|.|+-.|.++|+.+.++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999987753
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.61 E-value=14 Score=37.81 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=82.7
Q ss_pred EecCCcEEEEeCCCCceEEEecCCCCceeEEEE--------CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc-c
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL--------SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH-Q 272 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~--------~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~ 272 (347)
.+.|+.+.+|+..++.....+.+-...|..|.. -|.=++++..+.--.|.++-+......... ..+..+ .
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-ccccccee
Confidence 456889999999986666666555555555442 233345555554555666644321111110 011110 0
Q ss_pred ccc-ccceEEEEECCCCCEEEEeeCCCeEEEE--eCCCc---e-e----------------eEEec-CCccCeeeEEEcC
Q 019006 273 HNF-EKNLLKCGWSPDGSKVTAGSSDRMVYIW--DTTSR---R-I----------------LYKLP-GHTGSVNESVFHA 328 (347)
Q Consensus 273 ~~~-~~~~~~~~~s~~g~~l~sgs~dg~i~vw--d~~~~---~-~----------------~~~~~-~h~~~v~~~~~~~ 328 (347)
... ...+.++....+|+.+++|-.| .|+=+ ....+ + + +.+++ .+..+|..++...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 001 1346677777788877766554 44422 11111 0 0 12344 5667899999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
...+|-+-++.|+|.+|++
T Consensus 253 SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ccceeeeeccCceEEEEEc
Confidence 9999999999999999986
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=84.40 E-value=6.8 Score=33.78 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=51.5
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-----eeEEEcCCCCEEEEecCCCcEEeec
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-----NESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.++...++|.+|++.-.-..|++.|..+++++.++.|..+.= ...+|-.+-+++-....+++|.++|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 4556677899999999988999999999999999997662211 2255656666666667788888876
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=83.06 E-value=17 Score=26.98 Aligned_cols=115 Identities=11% Similarity=0.108 Sum_probs=65.0
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCc--------eEEEecCCCCceeEEEECC-----CCCEEEEEcCCCcEEEEeC
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGE--------VSMTLQGHQDMITGMSLSP-----DGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~v~~~~-----~~~~l~t~~~d~~i~~wd~ 255 (347)
.-.|+...+.|++++.-|+|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566667788889999999999865332 122222 234577775333 233555555 558999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEE---CC-CCCEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGW---SP-DGSKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
..... .. .+ .+.+-+.++.+ .. +.+++++|+ +..|.-||..-.+..+...
T Consensus 81 ~~N~d--~F---yk----e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSD--LF---YK----EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCch--hh---hh----hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEec
Confidence 74321 11 11 11233444433 33 344555554 5578888887777666543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.91 E-value=9.6 Score=29.78 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.3
Q ss_pred CeeeEEEcCCC------CEEEEecCCCcEEeec
Q 019006 320 SVNESVFHATE------PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 320 ~v~~~~~~~~~------~~l~s~s~D~~i~i~~ 346 (347)
.+..++|||.| .+||....++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 68899999965 4899999999999874
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.36 E-value=10 Score=29.57 Aligned_cols=29 Identities=10% Similarity=0.366 Sum_probs=23.6
Q ss_pred ceeEEEEcCCC------CEEEEecCCCeEEEEECC
Q 019006 102 AILDLHWTTDG------SQIISASPDKTLRAWDVE 130 (347)
Q Consensus 102 ~v~~~~~~~~~------~~l~s~~~dg~i~iwd~~ 130 (347)
.|.+++|||.| -.|+....++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999953 367888899999999754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=81.73 E-value=44 Score=30.98 Aligned_cols=52 Identities=6% Similarity=-0.064 Sum_probs=28.0
Q ss_pred CCCEEEEeeCC----CeEEEEeCCCceeeEEecCC----ccCeeeEEEcCCCCEEEEecCC
Q 019006 287 DGSKVTAGSSD----RMVYIWDTTSRRILYKLPGH----TGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 287 ~g~~l~sgs~d----g~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D 339 (347)
+++..+.|+.+ ..+.+||+.+.+-. ++... .......+..-++++++.++.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 56676766654 45899998876532 22211 1111112223356788888853
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=80.41 E-value=67 Score=32.17 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=112.4
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCce---------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC---CCC-
Q 019006 109 TTDGSQIISASPDKTLRAWDVETGKQ---------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---RQR- 175 (347)
Q Consensus 109 ~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~---~~~- 175 (347)
-++...+++.+.+|.++--+..+... ...+... ..+........... ++..++.|.+..... ...
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~-D~l~~~~~~~t~d~-LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDD-DFIEQLLVASTHDY-LLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCC-CeeEEEEEecCCCe-EEEEeCCCcEEEEEhhhCcCCC
Confidence 34456778888999988776543211 1111221 22222222222333 444556677665543 221
Q ss_pred -----Cce---eecCCCCc-eEEEEEc--CCCCeEEEEecCCcEEEEeCCC-------CceEEEecCCCCceeEEEECCC
Q 019006 176 -----GAI---QTFPDKYQ-ITAVSFS--DASDKIYTGGIDNDVKVWDLRK-------GEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 176 -----~~~---~~~~~~~~-v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
..+ ..+..... +.++.+. .+...++..+.+|.++-.++.. +.....+.. .+.+..+....+
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~ 649 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG 649 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence 111 11222223 3444432 3456788999999998876543 222223333 344544444445
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCcC---ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-------
Q 019006 238 GSYLLTNGMDCKLCIWDMRPYAPQN---RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS------- 307 (347)
Q Consensus 238 ~~~l~t~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~------- 307 (347)
...++..+..|.+..+......+.. .-+..+.- .-.+.+..+..-.++..++..+..|.++...+..
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L---~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~ 726 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL---KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG 726 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC---CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence 5567777777777666554322111 11111111 1123344444334556788899999888876431
Q ss_pred --ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 308 --RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 308 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
+....++......+..+....+...++-.+.+|.+..
T Consensus 727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lr 765 (800)
T TIGR01063 727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIR 765 (800)
T ss_pred CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1122233333344544444444444555566665543
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=80.26 E-value=41 Score=33.44 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=0.0
Q ss_pred EEEECC-CCCEEEEEcCCCcEEEEeC-CCCCCcCceeEEEecccccc------ccceEEEEECCCCCEEEEeeCCCeEEE
Q 019006 231 GMSLSP-DGSYLLTNGMDCKLCIWDM-RPYAPQNRCVKILEGHQHNF------EKNLLKCGWSPDGSKVTAGSSDRMVYI 302 (347)
Q Consensus 231 ~v~~~~-~~~~l~t~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~g~~l~sgs~dg~i~v 302 (347)
.++|+| +.+.||.....|...+||+ ...................+ ......+.|.++-..|+..+.. .+.+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~ 228 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLML 228 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEE
Q ss_pred EeCCCcee--eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 303 WDTTSRRI--LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 303 wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+.+... .-........|.++.-+|..+-.+..=....|...++
T Consensus 229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~ 275 (765)
T PF10214_consen 229 IDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDV 275 (765)
T ss_pred EECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEc
|
These proteins are found in fungi. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.05 E-value=39 Score=30.75 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=24.8
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
.|.+++..+..+.+++...++.|.+||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899988889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 347 | ||||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-42 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-42 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-42 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-42 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-08 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-42 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-41 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-08 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-41 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-41 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-41 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-08 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-41 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-41 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-41 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-41 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-41 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-41 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-08 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-41 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-08 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-41 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-33 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 9e-24 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-22 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-22 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-22 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-22 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-22 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-22 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-13 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-19 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-14 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-12 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-19 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-18 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-18 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 6e-18 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 9e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-17 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 1e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 1e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-16 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-16 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 9e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 6e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-16 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-16 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 9e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-04 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-16 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 9e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-16 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-15 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-15 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-10 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-15 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-15 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-15 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-08 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-15 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-14 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-13 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 8e-14 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 8e-13 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-08 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 3e-13 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-13 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 9e-13 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-12 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 5e-12 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-11 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-11 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-11 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 7e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-11 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 8e-11 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 8e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 9e-11 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 9e-05 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-10 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-10 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-10 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-10 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-10 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-10 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 5e-10 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 6e-10 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-09 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 3e-09 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 2e-06 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 7e-08 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 2e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 9e-08 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 2e-07 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 2e-07 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 2e-07 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 4e-07 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 4e-07 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 3e-06 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 4e-06 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 5e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 3e-05 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 3e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 4e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 4e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 4e-05 | ||
| 3i2n_A | 357 | Crystal Structure Of Wd40 Repeats Protein Wdr92 Len | 6e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-04 |
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92 Length = 357 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.79 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.72 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.72 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.71 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.67 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.64 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.64 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.6 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.54 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.51 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.51 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.49 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.47 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.47 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.44 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.41 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.38 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.35 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.32 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.31 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.29 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.24 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.23 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.23 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.19 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.06 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.96 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.95 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.9 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.9 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.88 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.86 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.86 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.85 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.85 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.83 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.83 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.83 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.81 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.77 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.71 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.69 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.65 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.58 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.57 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.57 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.52 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.5 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.45 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.43 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.38 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.33 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.32 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.31 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.29 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.28 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.19 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.18 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.16 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.15 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.15 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.12 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.09 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.09 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.06 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.03 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.98 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.93 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.86 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.81 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.79 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.71 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.6 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.6 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.59 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.5 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.49 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.49 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.24 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.2 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.17 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.12 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.1 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.09 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.07 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.04 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.99 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.99 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.91 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.83 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.7 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.65 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.62 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.59 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.38 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.28 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.12 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.69 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.65 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.52 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.09 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.07 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 94.79 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.79 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.79 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 94.64 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.6 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.34 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.15 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 94.12 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 94.05 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.52 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.27 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 93.2 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.13 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.08 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.69 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 92.37 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.32 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.83 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.75 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.35 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.4 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 89.26 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 88.71 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 84.06 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.79 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 81.48 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=365.52 Aligned_cols=288 Identities=26% Similarity=0.458 Sum_probs=263.7
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.+|.+.|++++|+|++++|++|+.||+|++||+.. ......+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 457889999999999999999999999999999999864 3445678999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
.+++.+..+..|...|.++++.+.+ .++++|+.|++|++||++++..+..+. +...+.++.+++++..+++|+.|+.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999999999998865 578999999999999999988887765 45679999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCC--------------------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPD--------------------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~--------------------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
++||+++++....+.+|...|.+++|+|+ +.+|++++.|+.|++||++. ..++..+
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~----~~~~~~~ 334 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTL 334 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT----TEEEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC----CceEEEE
Confidence 99999999999999999999999999996 67899999999999999974 4556667
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+|. ..+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|+|+|.|++|++|++
T Consensus 335 ~~h~----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 335 VGHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCS----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ECCC----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 6663 56889999999999999999999999999999999999999999999999999999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=350.80 Aligned_cols=288 Identities=22% Similarity=0.376 Sum_probs=257.5
Q ss_pred eEecCccccEEEEEECCC----CCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPA----GTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~----~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
..+.+|.+.|++++|+|+ +.+|+||+.|++|++|++.... .....+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456799999999999985 5799999999999999986442 23346889999999999999999999999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+||+.+++.+..+..+...+..+++++++ .++++|+.|+.+++||++.+.....+. +...+.+++|+|+++++++|+.
T Consensus 106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999988888888888888888765 588999999999999999887776654 4457999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
||.|++||+++++....+.+|...|.+++|+|++++|++++.|+.|++||++. ......+.+|. ..+.+++|
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~~~~ 256 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH----ANLAGTLSGHA----SWVLNVAF 256 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT----CCEEEEECCCS----SCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC----cceeEEEcCCC----CceEEEEE
Confidence 99999999999999999999999999999999999999999999999999974 33455666653 56899999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++.+|++|+.|+.|++||+.+++++..+.+|...|..++|+|++..|++++.|++|++||+
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-50 Score=350.61 Aligned_cols=290 Identities=19% Similarity=0.356 Sum_probs=256.9
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.....+.+|.+.|++++|+|++++|++|+.||+|++|+... ......+..|...|.+++|+|++++|++++.|+.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999864 34556788999999999999999999999999999999
Q ss_pred ECCCCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEE
Q 019006 128 DVETGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 128 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 202 (347)
++.+.. ....+..|...+..+.+.+.+ .+++++.|++|++||++++..+..+. +...|.+++|+|++.++++|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 997653 445677888888888876553 58899999999999999988877775 55789999999999999999
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.|+.|++||++++.....+.+|...|++++|+|++++|++++.|+.|++||++.. ..+..+... .....+.++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~--~~~~~v~~~ 276 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHD--NIICGITSV 276 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCT--TCCSCEEEE
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----cEEEEEccC--CcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999742 223333211 123468999
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|+|+|++|++|+.||.|++||..+++.+..+.+|.+.|.+++|+|++.+|+|+|.|++|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=355.38 Aligned_cols=293 Identities=21% Similarity=0.391 Sum_probs=253.7
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...|.||.+.|++++|+|++++|+||+.|++|++||... ......+.+|...|.+++|+|++++|++|+.|+.+++||+
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 467899999999999999999999999999999999864 4556778999999999999999999999999999999998
Q ss_pred CCCc-------eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec------CCCCceEEEEEcC-C
Q 019006 130 ETGK-------QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF------PDKYQITAVSFSD-A 195 (347)
Q Consensus 130 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~-~ 195 (347)
.+.. ....+..|...+..+.+.+.....+++|+.|++|++||++++..+..+ .+...+.++.+++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 6532 234567788888888888877778999999999999999998877655 2456799999976 7
Q ss_pred CCeEEEEecCCcEEEEeCC-CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 196 SDKIYTGGIDNDVKVWDLR-KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
+..+++|+.|+.|++||++ ..+....+.+|...|++++|+|++++|++++.|++|++||++.. ..+..+..+...
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~----~~~~~~~~~~~~ 293 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG----HQLQVYNREPDR 293 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT----EEEEEECCCCSS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC----cEEEEecccccc
Confidence 7899999999999999998 45677888999999999999999999999999999999999843 334444332211
Q ss_pred ---cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe----cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 275 ---FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL----PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 275 ---~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....+.+++|+|+|++|++|+.||.|++||...++.+..+ .+|.+.|.+++|+|++.+|+|+|.|++|++|++
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 1124789999999999999999999999999998888777 689999999999999999999999999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=342.93 Aligned_cols=291 Identities=20% Similarity=0.346 Sum_probs=255.1
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.....+.||.+.|++++|+|++++||||+.||+|++||.... .....+..|...|.+++|+|++.+|++++.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 445678999999999999999999999999999999998643 3455677888999999999999999999999999999
Q ss_pred ECCCC------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcC--CCCe
Q 019006 128 DVETG------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSD--ASDK 198 (347)
Q Consensus 128 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~ 198 (347)
++... .....+..|...+..+.+.+.+ ..+++++.|++|++||+++++.+..+. +...+.++.++| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98643 2345566788899988888765 578899999999999999998887775 556899999987 4679
Q ss_pred EEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+++|+.||.|++||+++++....+.+|...|++++|+|++++|++++.|++|++||++.. ..+..+..+. ....
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~~~--~~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD----REVAIYSKES--IIFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCTT--CCSC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCC--cccc
Confidence 999999999999999999999999999999999999999999999999999999999742 2333333222 2235
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.+++|+|+|.+|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|+||+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=332.27 Aligned_cols=287 Identities=24% Similarity=0.415 Sum_probs=249.2
Q ss_pred eeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeE
Q 019006 50 IMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 124 (347)
...|.||.+.|++++|+|++ ++|++|+.|++|++|++.+.. .+...+.+|...|.+++|+|++++|++++.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 45688999999999999965 899999999999999985321 2345788999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCC------CCe
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA------SDK 198 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~------~~~ 198 (347)
++||+.+++.+..+..|...|.++.+.+.+ .++++|+.|++|++||++.........+...+.++.+.|. +..
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999999999999999988765 5899999999999999976544444456678999999985 348
Q ss_pred EEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||++. ..++..+..+ ..
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-----~~ 239 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA----KKAMYTLSAQ-----DE 239 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT----TEEEEEEECC-----SC
T ss_pred EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCC-----Cc
Confidence 99999999999999999999899999999999999999999999999999999999974 3344444432 46
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec--------CCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP--------GHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+++|+|++.+|++++.+ .+++|++..+..+..+. .|...+.+++|+|++++|++++.|+.|+|||+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 8999999999999998866 59999999887776654 34567899999999999999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=327.23 Aligned_cols=285 Identities=24% Similarity=0.373 Sum_probs=249.6
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...++.+|.+.|++++|+|++++|++|+.||+|++||+.. ......+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 3567899999999999999999999999999999999964 456677889999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcC-CCCeEEEEecC
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSD-ASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d 205 (347)
+.+++.+..+..|...|.++++++.+ .++++|+.|++|++||++++.. ...+ .+...|.+++|+| ++..+++|+.|
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999998875 5889999999999999987643 3444 4567899999999 56899999999
Q ss_pred CcEEEEeCCCCceEEEec-CCCCceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.|++||++.+.....+. +|...+..+.|+| ++++|++++.|++|++||++. ..++..+.+|. ..+..+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----~~~~~~~~~h~----~~v~~~ 234 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCVATLEGHM----SNVSFA 234 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----TEEEEEEECCS----SCEEEE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----CccceeeCCCC----CCEEEE
Confidence 999999998877665554 4557789999987 678999999999999999974 45667777764 568899
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC--EEEEecCCCcEE
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP--VIGSCSSDKQIY 343 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~ 343 (347)
+|+|++++|++|+.||.|++||..+++++..+..|...+++++|+|++. ++++++.||.+.
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999999999999999999999999999885 577777776543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=333.77 Aligned_cols=295 Identities=20% Similarity=0.413 Sum_probs=245.0
Q ss_pred CeeEecCccc-cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee--eEEEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 49 PIMLLTGHQS-AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--FMVLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 49 ~~~~~~~h~~-~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
.+..+.+|.. .|++++|+|+|++||+|+.|++|++|++.+.... .....+|...|.+++|+|++++|++++.|++++
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 3456889988 9999999999999999999999999999754221 223468999999999999999999999999999
Q ss_pred EEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeec-CCCCceEEEEEcCCCCeE
Q 019006 126 AWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTF-PDKYQITAVSFSDASDKI 199 (347)
Q Consensus 126 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l 199 (347)
+|++..+. .+..+..|...|.++++++++ .++++|+.|++|++||++.+.. +..+ .+...|.+++|+|++.+|
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 99987763 466788899999999998865 6899999999999999987643 2333 356789999999999999
Q ss_pred EEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc-----------CceeE
Q 019006 200 YTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ-----------NRCVK 266 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-----------~~~~~ 266 (347)
++++.|+.|++||.+.++ ....+.+|...|++++|+|++++|++++.|++|++||....... ..++.
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 999999999999998775 45678999999999999999999999999999999997432111 12223
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce---------eeEEecCCccCeeeEEEcCCCC-EEEEe
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR---------ILYKLPGHTGSVNESVFHATEP-VIGSC 336 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 336 (347)
.+.+. ....+.+++|+|++..|++++.|+.|++|+...+. ......+|...|++++|+|+++ +|||+
T Consensus 246 ~~~~~---h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 246 TLSGF---HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EECSS---CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred EecCC---CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 33331 24578999999999999999999999999986542 1223468999999999999985 99999
Q ss_pred cCCCcEEeecC
Q 019006 337 SSDKQIYLGEI 347 (347)
Q Consensus 337 s~D~~i~i~~~ 347 (347)
|.||+|++|++
T Consensus 323 s~Dg~v~~W~~ 333 (345)
T 3fm0_A 323 SDDGEVAFWKY 333 (345)
T ss_dssp ETTSCEEEEEE
T ss_pred CCCCcEEEEEe
Confidence 99999999984
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=322.33 Aligned_cols=293 Identities=33% Similarity=0.587 Sum_probs=255.4
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+...+.+|...|++++|+|++++|++|+.||.|++|+... ......+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999999999999999999854 34556788999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|+.+++.+..+..|...+..+.+.+.+ .++++|+.|++|++||+++++.+..+. +...+.++.|+|++..+++++.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999998888765 588999999999999999888877775 456899999999999999999999
Q ss_pred cEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 207 DVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
.|++||+++++....+. .+...+..++|+|++++|++++.|+.|++||++. ..+...+.+|.... ..+......
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~-~~~~~~~~~ 246 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK----GKCLKTYTGHKNEK-YCIFANFSV 246 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT----TEEEEEECSSCCSS-SCCCEEEEC
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC----CcEEEEEEecCCce-EEEEEEEEe
Confidence 99999999988776654 4566799999999999999999999999999974 34555666554321 122223345
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEec--CCCcEEeecC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS--SDKQIYLGEI 347 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~D~~i~i~~~ 347 (347)
+++.+|++|+.||.|++||+.+++++..+.+|...|..++|+|+++++++++ .|++|++|+.
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 7889999999999999999999999999999999999999999999999987 6999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=327.08 Aligned_cols=287 Identities=24% Similarity=0.378 Sum_probs=242.4
Q ss_pred eeEecCccccEEEEEE-----CC-CCCeEEEeeCCCcEEEEeccCC------CeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 50 IMLLTGHQSAVYTMKF-----NP-AGTVIASGSHDRDIFLWHVHGD------CKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~-----~~-~~~~l~s~~~d~~v~~w~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
...+.||.+.|++++| ++ ++++||+|+.|++|++|++... ......+.+|...|.+++|+|++.++++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4578999999999999 76 8999999999999999998632 1334568899999999999999999999
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCceEEEEEcC
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQITAVSFSD 194 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~ 194 (347)
++.|++|++||+.+++.+..+..|...|.++++++++ .++++++.|++|++||+......... .+...+.++.|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 9999999999999999999999999999999998875 57899999999999999744332222 3456799999999
Q ss_pred CC----------CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 195 AS----------DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 195 ~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
++ .++++++.|+.|++||. ..+....+.+|...|.+++|+|++++|++++.|+.|++||++.... .
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~---~ 248 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY---P 248 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS---C
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc---c
Confidence 87 68999999999999994 5667778889999999999999999999999999999999853221 1
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE--Eec-----------CCccCeeeEEEcCCCC
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY--KLP-----------GHTGSVNESVFHATEP 331 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~--~~~-----------~h~~~v~~~~~~~~~~ 331 (347)
...+.. ...+.+++|+|++.+|++|+ |+.|++||+.+++... .+. +|...|.+++|+|+++
T Consensus 249 ~~~~~~-----~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 249 QREFDA-----GSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SEEEEC-----SSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred ceeecC-----CCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222221 23588999999999887664 7789999998766543 443 7888999999999999
Q ss_pred EEEEecCCCcEEeecC
Q 019006 332 VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~~ 347 (347)
+|++++.||+|++|++
T Consensus 323 ~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CEEEEETTSEEEEEEE
T ss_pred eEEEecCCceEEEEEE
Confidence 9999999999999984
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=334.51 Aligned_cols=287 Identities=25% Similarity=0.419 Sum_probs=246.7
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc------------------cceeEEEEcCCCCEE
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK------------------NAILDLHWTTDGSQI 115 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~------------------~~v~~~~~~~~~~~l 115 (347)
.+|.+.|.+++|+|+|++||+|+ ++.+++|++... .....+..|. ..|.+++|+|++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 37999999999999999999976 689999998543 3333444332 248999999999999
Q ss_pred EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC-
Q 019006 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD- 194 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~- 194 (347)
++|+.|+.|++||+.+++.+..+..|...|.++++++.+ .++++++.|++|++||++++.....+.....+.+++++|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 999999999999999999888999999999999998875 578999999999999999988877777778899999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCceEEEe-------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC-------
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEVSMTL-------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP------- 260 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~------- 260 (347)
++.++++|+.|+.|++||+++++....+ .+|...|.+++|+|++++|++++.|+.|++||++....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 8899999999999999999998877666 57889999999999999999999999999999975321
Q ss_pred -cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC------CCCEE
Q 019006 261 -QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA------TEPVI 333 (347)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l 333 (347)
...+...+.+| ...+.+++|+|++.+|++|+.||.|++||..+++.+..+.+|.+.|.+++|++ ++.+|
T Consensus 298 ~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 298 NSGTCEVTYIGH----KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ---CEEEEEECC----SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCcceEEEecc----cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 12233444454 35689999999999999999999999999999999999999999999999886 67899
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
+|+|.||+|+||++
T Consensus 374 ~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 374 ATGSGDCKARIWKY 387 (393)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEECCCCcEEECcc
Confidence 99999999999984
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=329.95 Aligned_cols=281 Identities=17% Similarity=0.290 Sum_probs=232.3
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEecc---------C-CCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH---------G-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~---------~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 124 (347)
.|...|.+++|+|+|++|++++ |+++++|+.. . ..........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5778899999999999999888 6778888631 0 001112233466789999999985 78899999999
Q ss_pred EEEECCCCceeee----eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCC-e
Q 019006 125 RAWDVETGKQIKK----MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASD-K 198 (347)
Q Consensus 125 ~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~ 198 (347)
++||+.+++.+.. ...|...|.++++++++ .++++|+.|++|++||+++++.+..+. |...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999998875433 34688999999998875 589999999999999999998888876 567899999999885 6
Q ss_pred EEEEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+++++.|++|++||+++++....+. .|...+.+++|+|+ ++++++++.|+.|++||++.. +++..+.+|.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~----~~~~~~~~h~--- 257 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST----SCVLSSAVHS--- 257 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCS---
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC----cEEEEEcCCC---
Confidence 7899999999999999998877664 34567899999995 568899999999999999853 4456677664
Q ss_pred ccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 276 EKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 276 ~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
..|.+++|+|++ ++|++|+.|+.|+|||+.+++++ ++.+|.+.|++++|+|+++ +|+|+|.|++|++|++
T Consensus 258 -~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 258 -QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp -SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred -CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 578999999998 57999999999999999998765 6789999999999999986 6789999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=328.98 Aligned_cols=284 Identities=15% Similarity=0.293 Sum_probs=230.4
Q ss_pred ecCccccEEEEEECCCCCeEEEeeC------CCcEEEEeccCCC---eeeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSH------DRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~------d~~v~~w~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
..+|+..|++++|+|||++||+|+. |+.|++|+..... .......+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4589999999999999999999998 6789999874321 12234567889999999999875 566788999
Q ss_pred EEEEECCCCceee----eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCC-
Q 019006 124 LRAWDVETGKQIK----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASD- 197 (347)
Q Consensus 124 i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~- 197 (347)
|++||+.+++... ....|...|.++++++++ .++++|+.|++|++||+++++.+..+. +...|.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998876432 234678889999998865 588999999999999999988887775 457899999999875
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEe--cCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTL--QGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|+ +.+|++++.|+.|++||++. ..+...+.+|.
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~----~~~~~~~~~~~-- 269 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN----PDSAQTSAVHS-- 269 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC----GGGCEEECCCS--
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC----CcEeEEEeccc--
Confidence 7889999999999999988766544 346677999999997 46888999999999999974 34455566553
Q ss_pred cccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC-CCCEEEEecCCCcEEeecC
Q 019006 275 FEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA-TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 275 ~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.+++|+|++ ++|++|+.||.|+|||+.+++++..+ +|.+.|++++|+| ++.+|+|+|.||+|++|++
T Consensus 270 --~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 270 --QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp --SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred --eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 578999999987 57999999999999999999887654 8999999999998 7899999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=318.55 Aligned_cols=292 Identities=18% Similarity=0.327 Sum_probs=232.8
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEE-eC-cccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVL-KG-HKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
.+..+.+|.+.|++++|+|+ +||+|+.|++|++|++... ......+ .+ |...|.+++|+|++++|++++.|++|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 35678899999999999987 9999999999999998643 2333344 34 999999999999999999999999999
Q ss_pred EEECCC-------CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC----Cceeec-CCCCceEEEEEc
Q 019006 126 AWDVET-------GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR----GAIQTF-PDKYQITAVSFS 193 (347)
Q Consensus 126 iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~----~~~~~~-~~~~~v~~~~~~ 193 (347)
+||+.. .+.+..+..|...|.++++++++ .++++|+.|++|++||++.. ..+..+ .+...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999853 24456677899999999998875 58999999999999999532 233444 356789999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECCC--CCEEEEEcCCCcEEEEeCCCCCCcC----cee
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPD--GSYLLTNGMDCKLCIWDMRPYAPQN----RCV 265 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~----~~~ 265 (347)
|++.+|++++.|++|++||.+.+ ++...+.+|...|.+++|+|+ +.+|++++.|++|++||++...... .+.
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999998766 567788999999999999998 6789999999999999986432111 122
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce--eeE-EecCCcc-CeeeEEEcC--CCCEEEEecCC
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR--ILY-KLPGHTG-SVNESVFHA--TEPVIGSCSSD 339 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~--~~~-~~~~h~~-~v~~~~~~~--~~~~l~s~s~D 339 (347)
..+.. .....+.+++|++++ +|++|+.||.|++||..+++ .+. .+.+|.. .|+.++|+| ++++|+|+|.|
T Consensus 243 ~~~~~---~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 243 AILPD---VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EECCS---CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred eeccc---ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 22222 124679999999765 89999999999999998763 333 3468887 899999999 68899999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
|+|+|||+
T Consensus 319 g~v~~W~~ 326 (330)
T 2hes_X 319 GIVNFWSL 326 (330)
T ss_dssp SEEEEEEC
T ss_pred CcEEEEEe
Confidence 99999985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=312.31 Aligned_cols=287 Identities=26% Similarity=0.399 Sum_probs=241.9
Q ss_pred eeEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeE
Q 019006 50 IMLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 124 (347)
..+|+||.+.|++|+|+|+ +++|||||.|++|++|++.... .....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 3468999999999999997 6899999999999999986432 2345688999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee--cCCCCceEEEEEcCCC--CeEE
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT--FPDKYQITAVSFSDAS--DKIY 200 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~--~~l~ 200 (347)
++|+............+...+....+.+.+ .++++++.|+.+++||+........ ..+...+..++|++++ ..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999888777777777777666666654 5688999999999999876544332 2345678899998764 4678
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+++.|+.|++||+++++....+.+|...|++++|+|++++|++++.|+.|++||++.. ..+..+..+ ..+.
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~~-----~~v~ 260 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYTLDGG-----DIIN 260 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT----EEEEEEECS-----SCEE
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC----ceeeeecCC-----ceEE
Confidence 9999999999999999999999999999999999999999999999999999999743 344444432 4688
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe---------cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL---------PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.|+|++.++ +++.|+.|++||+..+..+..+ .+|...|++++|+|++++|++++.||.|+|||+
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999988665 5556899999999988776654 368899999999999999999999999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=341.56 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=240.8
Q ss_pred CeeEecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
....+.+|...|++++|+|++. .|++|+.|++|++|+.. ..+....+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence 3445789999999999999987 69999999999999975 345566789999999999999999999999999999999
Q ss_pred ECCCCceeeeee-------ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-------------------
Q 019006 128 DVETGKQIKKMA-------EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF------------------- 181 (347)
Q Consensus 128 d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~------------------- 181 (347)
|+.+++.+..+. .|...|..+++++++ .++++++.|++|++||+++++.+..+
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 999988877763 688899999998875 58899999999999999876543322
Q ss_pred -------------------------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cC-----------
Q 019006 182 -------------------------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QG----------- 224 (347)
Q Consensus 182 -------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~----------- 224 (347)
.|...|.+++|+|++++|++++.|+.|++||+.+++....+ .+
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 24457999999999999999999999999998765432221 00
Q ss_pred ----------------------------------------------------------------------CCCceeEEEE
Q 019006 225 ----------------------------------------------------------------------HQDMITGMSL 234 (347)
Q Consensus 225 ----------------------------------------------------------------------~~~~i~~v~~ 234 (347)
|...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 1234678999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEE
Q 019006 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYK 313 (347)
Q Consensus 235 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~ 313 (347)
+|++++|++++.|++|++||+.... ...... .+| ...+.+++|+|||++|++++.|+.|++||+.+ ++++..
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~--~~~~~~-~~h----~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~ 529 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGAS--VSEVKT-IVH----PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 529 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTE--EEEEEE-EEC----SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCc--eeeeec-cCC----CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee
Confidence 9999999999999999999986421 111122 223 45799999999999999999999999999987 665543
Q ss_pred --ecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 314 --LPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 314 --~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+|...|++++|+|++++|||+|.|++|++|++
T Consensus 530 ~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 4459999999999999999999999999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=339.48 Aligned_cols=290 Identities=18% Similarity=0.261 Sum_probs=250.9
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC-CCeeeEEEeCcccceeEEEEcCCCCEEEEecCC----Ce
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPD----KT 123 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~ 123 (347)
....+.+|...|++++|+|+|++||+|+.|++|++||+.. .......+.+|...|.+++|+|++++|++++.+ +.
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 4567889999999999999999999999999999999853 333445678999999999999999999998865 46
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 202 (347)
|++|| .++....+..|...|.++++++.+..++++|+.|++|++||....+....+. |...|.+++|+|++++|+++
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 77777 4566677888999999999999877789999999999999998877766665 55689999999999999999
Q ss_pred ecCCcEEEEeCCCCceEEEec-------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQ-------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+.|++|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||++. ..+...+..+. ..
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~----~~~~~~~~~~~-~~ 283 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGT-RI 283 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCS-SG
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC----CceeeeecCCC-Cc
Confidence 999999999999998887774 7999999999999999999999999999999874 34444444321 22
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
......+.| +++.|++++.||.+++||...++....+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 284 ~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 284 EDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp GGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 344566666 6889999999999999999999888889999999999999999999999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=332.77 Aligned_cols=281 Identities=32% Similarity=0.598 Sum_probs=250.5
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.+|...|.+++|+|+++.|++++.|+.|++|+..+ .....+.+|...|.+++|+|++++|++++.||.+++||.
T Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 456789999999999999999999999999999999854 345677899999999999999999999999999999995
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+++.+..+..|...+..+++++++ .++++++.|+.|++||.. ++.+..+ .+...+.+++|+|+++++++++.|+.|
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 567778888899999999998876 468899999999999964 4444444 456789999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
++||. +++....+.+|...|++++|+|++++|++++.|+.|++||.. .+++..+.+|. ..|.+++|+|+|
T Consensus 451 ~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-----~~~~~~~~~h~----~~v~~l~~s~dg 520 (577)
T 2ymu_A 451 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVRGVAFSPDG 520 (577)
T ss_dssp EEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-----SCEEEEEECCS----SCEEEEEECTTS
T ss_pred EEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-----CCEEEEEeCCC----CCEEEEEEcCCC
Confidence 99996 567788889999999999999999999999999999999953 35666777764 578999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++|++|+.||.|++||. +++++..+.+|.+.|++++|+|++++|+|+|.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999995 6788899999999999999999999999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=307.97 Aligned_cols=285 Identities=20% Similarity=0.308 Sum_probs=251.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.+|.+.|++++|+|++++|++|+.||.|++|++.. ......+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 56889999999999999999999999999999999864 45667788999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCC-----CceEEEeCCCCCcee-----------ec-CCCC--ceEEEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-----GTAKLWDMRQRGAIQ-----------TF-PDKY--QITAVS 191 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~~~-----------~~-~~~~--~v~~~~ 191 (347)
+++.+..+. +...+..+.+.+.+ .++++++.+ +.|++||+....... .+ .+.. .+.+++
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 998887776 77788888888875 577888888 999999987554211 11 1222 799999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCC-CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEec
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRK-GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
|+|+++.+++++.||.|++||+++ .+....+..|...|.+++|+|++++|++++.|+.|++||++.. .....+.
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~- 257 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL----QVLKKYE- 257 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEE-
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC----ceeeeec-
Confidence 999999999999999999999998 6788888899999999999999999999999999999999753 3344443
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCC--------------eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDR--------------MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg--------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
....+..++|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++|+|++++|+++
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 135688999999999999999988 89999999999999999999999999999999999999
Q ss_pred cCCCcEEeecC
Q 019006 337 SSDKQIYLGEI 347 (347)
Q Consensus 337 s~D~~i~i~~~ 347 (347)
+.||.|++|++
T Consensus 334 ~~dg~v~iw~~ 344 (369)
T 3zwl_B 334 GEDGFIRLHHF 344 (369)
T ss_dssp ETTSEEEEEEE
T ss_pred cCCCeEEEEEC
Confidence 99999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=336.24 Aligned_cols=286 Identities=26% Similarity=0.374 Sum_probs=244.9
Q ss_pred eEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCC----eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 125 (347)
..+.+|.+.|++|+|+|++ .+|+||+.|++|++|++.... .....+.+|...|.+++|+|++++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4688999999999999875 799999999999999986432 23456889999999999999999999999999999
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----CCCCceEEEEEcCCC--CeE
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQITAVSFSDAS--DKI 199 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l 199 (347)
+||+.+++....+..|...|.++++++++ .++++|+.|++|++||.......... .+...|.+++|+|++ ..+
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99999999999999999999999998876 46889999999999998655433222 345679999999986 579
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
++++.|+.|++||+++++....+.+|...|++++|+|++++|++++.|+.|++||++.. +.+..+.. ...+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~----~~~~~~~~-----~~~v 605 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG----KKLYSLEA-----NSVI 605 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT----EEEECCBC-----SSCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEecC-----CCcE
Confidence 99999999999999999999999999999999999999999999999999999999743 33333322 3468
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-------------------CeeeEEEcCCCCEEEEecCCC
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-------------------SVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-------------------~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.+++|+|++.+|++++. +.|++||+.+++++..+..|.. .+.+++|+|++++|+|++.||
T Consensus 606 ~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 89999999998888765 5699999999998877654321 368899999999999999999
Q ss_pred cEEeecC
Q 019006 341 QIYLGEI 347 (347)
Q Consensus 341 ~i~i~~~ 347 (347)
+|+||++
T Consensus 685 ~i~iW~i 691 (694)
T 3dm0_A 685 VIRVWGI 691 (694)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=314.79 Aligned_cols=290 Identities=13% Similarity=0.137 Sum_probs=249.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-----eeeEEEeCcccceeEEEEcCC----C---CEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-----KNFMVLKGHKNAILDLHWTTD----G---SQIIS 117 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-----~~~~~~~~h~~~v~~~~~~~~----~---~~l~s 117 (347)
...+.+|.+.|++++|+| ++|++|+.||.|++|++.... .....+.+|...|.+++|+|+ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 356789999999999998 899999999999999997543 246678899999999999999 9 99999
Q ss_pred ecCCCeEEEEECCCCce-----eeeeecc-----CcceeEeecC----CCCCCE-EEEEcCCCceEEEeCCC------CC
Q 019006 118 ASPDKTLRAWDVETGKQ-----IKKMAEH-----NSFVNSCCPS----RRGPPL-VVSGSDDGTAKLWDMRQ------RG 176 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-~~s~~~d~~i~iwd~~~------~~ 176 (347)
++.||.|++||+.+++. ...+..| ...+..+.+. +.+ .+ +++++.|+.|++||++. ..
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccc
Confidence 99999999999988876 7777777 4788888888 655 56 89999999999999987 55
Q ss_pred cee-----ec--------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC---C---CCceeEEEECCC
Q 019006 177 AIQ-----TF--------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG---H---QDMITGMSLSPD 237 (347)
Q Consensus 177 ~~~-----~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~v~~~~~ 237 (347)
.+. .+ .+...+.+++|+|++ .+++++.||.|++||+++++....+.. | ...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 544 43 245679999999999 999999999999999999999999988 8 899999999999
Q ss_pred CCEEEEEcCC---CcEEEEeCCCCCCcCceeEEEeccc---------cccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 238 GSYLLTNGMD---CKLCIWDMRPYAPQNRCVKILEGHQ---------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 238 ~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
+++|++++.| +.|++||++.. ..+..+.... ......+.+++|+|++++|++|+.||.|++||+
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9999999999 99999999753 3445554400 002457999999999999999999999999999
Q ss_pred CCceeeEEec------CC---------------ccCeeeEEEcCCC----------CEEEEecCCCcEEeecC
Q 019006 306 TSRRILYKLP------GH---------------TGSVNESVFHATE----------PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 306 ~~~~~~~~~~------~h---------------~~~v~~~~~~~~~----------~~l~s~s~D~~i~i~~~ 347 (347)
.+++.+..+. +| ...|..++|+|++ ++|++++.||.|++|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 9999999999 88 9999999999998 79999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=299.04 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=218.0
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
...+.+|.+.|.+++|+|++.+|++++.||+|++||+.+++.+..+..|...+..+.+.+.+ .++++|+.|++|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEEC
Confidence 45688999999999999999999999999999999999999999999899999988887765 58899999999999999
Q ss_pred CCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECC-CCCEEEEEcCCCc
Q 019006 173 RQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCK 249 (347)
Q Consensus 173 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~ 249 (347)
.++..+..+. +...|.+++|+|+++++++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++++.|++
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 9988877764 5678999999999999999999999999999877 45567889999999999999 6789999999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECC--CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP--DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
|++||++...+ ...+..+. ...+..+.|+| ++.+|++|+.|+.|++||+.+++++..+.+|...|..++|+
T Consensus 165 v~iwd~~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 165 VKVWSLGQSTP----NFTLTTGQ---ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp EEEEETTCSSC----SEEEECCC---TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCCc----cceeccCC---cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC
Confidence 99999975332 12222211 24567777876 78899999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCcEEeecC
Q 019006 328 ATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++++|+|++.||+|++||+
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp SSSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEEC
Confidence 99999999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=319.08 Aligned_cols=283 Identities=31% Similarity=0.561 Sum_probs=249.6
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+..+.+|...|.+++|+|+++.|++++.|+.|++|+..+ .....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 3456789999999999999999999999999999999754 44567889999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCc
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
... ..+..+..|...+..+++++++ .++++++.|+.+++||.. ++.+..+ .+...|.+++|+|+++++++++.|+.
T Consensus 332 ~~~-~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 332 RNG-QHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp TTS-CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CCC-CeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 764 4566777888889888888765 578999999999999964 4444444 45678999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|++||. +++....+.+|...|++++|+|++++|++++.|+.|++||.. ...+..+.+|. ..+.+++|+|+
T Consensus 409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-----~~~~~~~~~~~----~~v~~~~~spd 478 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVRGVAFSPD 478 (577)
T ss_dssp EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----SCEEEEEECCS----SCEEEEEECTT
T ss_pred EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-----CCEEEEEcCCC----CCEEEEEEcCC
Confidence 999995 567788889999999999999999999999999999999964 24455666653 57899999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 999999999999999995 67888899999999999999999999999999999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=309.68 Aligned_cols=290 Identities=17% Similarity=0.323 Sum_probs=242.3
Q ss_pred eEecCccccEEEEEECCC----CCeEEEeeCCCcEEEEeccCCCeeeEEEeC-----cccceeEEEEcCC----CCEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPA----GTVIASGSHDRDIFLWHVHGDCKNFMVLKG-----HKNAILDLHWTTD----GSQIIS 117 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s 117 (347)
....+|.+.|++++|+|+ ...+++++.++.|++|++... .....+.. |...|.+++|+|+ +.+|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 456799999999999984 456777777779999998632 22333332 5678999999998 669999
Q ss_pred ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----CCCCceEEEEEc
Q 019006 118 ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQITAVSFS 193 (347)
Q Consensus 118 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~ 193 (347)
++.||.|++||+.+++.+..+..|...+..+++++.+..++++++.|+.|++||+++++.+..+ .+...+.+++|+
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999999999999998899999999999856679999999999999999988877776 466789999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCceEEEe----------------------------cCCCCceeEEEECCCCCEEEEEc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTL----------------------------QGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
|++..+++++.||.|++||+++++....+ ..|...|.+++|+ ++++++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 99999999999999999999876543332 2388999999998 78999999
Q ss_pred CCCcEEEEeCCCCCCc----------CceeEEEeccccccccceEEEEECCC--CCEEEEeeCCCeEEEEeCCCcee---
Q 019006 246 MDCKLCIWDMRPYAPQ----------NRCVKILEGHQHNFEKNLLKCGWSPD--GSKVTAGSSDRMVYIWDTTSRRI--- 310 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~~~--- 310 (347)
.|+.|++||++..... ...+..+..|. ..+.+++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ----CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS----CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccC----CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999998754321 12234444442 45778889999 99999999999999999998764
Q ss_pred -eEEecCC--ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 311 -LYKLPGH--TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 311 -~~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...+.+| ...|.+++|+|++++|++++.||.|++||+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 3477888 799999999999999999999999999986
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=315.91 Aligned_cols=292 Identities=12% Similarity=0.212 Sum_probs=235.8
Q ss_pred CeeEe-cCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccC---CC--eeeEEEeCcccceeEEEEcCCCCEEEEecCC
Q 019006 49 PIMLL-TGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHG---DC--KNFMVLKGHKNAILDLHWTTDGSQIISASPD 121 (347)
Q Consensus 49 ~~~~~-~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~---~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 121 (347)
.+..+ .+|.+.|++++|+| ++++||+|+.||+|++|++.. .. .....+ +|...|.+++|+|++++|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 44566 89999999999999 999999999999999999853 21 112222 589999999999999999999999
Q ss_pred CeEEEEECC---CCceeeeeecc------------CcceeEeec-CCCCCCEEEEEcCCCceEEEeCCCCCceeecC---
Q 019006 122 KTLRAWDVE---TGKQIKKMAEH------------NSFVNSCCP-SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--- 182 (347)
Q Consensus 122 g~i~iwd~~---~~~~~~~~~~~------------~~~v~~~~~-~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--- 182 (347)
|.|++||+. +++....+..+ ...+..+.+ ...+..++++|+.|+.|++||+++++.+..+.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999994 55544433322 222322221 11234689999999999999999988887775
Q ss_pred CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEEC----CCCCEEEEEcCCCcEEEEeCCC
Q 019006 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLS----PDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 183 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~----~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+...|.+++|+|++.++++|+.||.|++||+++++....+. .|...|.+++|+ |++.+|++++.|+.|++||++.
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 45789999999999999999999999999999998888875 677789999665 4677999999999999999974
Q ss_pred CCCcCceeEEEecccc----------------------ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 258 YAPQNRCVKILEGHQH----------------------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
..+...+.++.. .....+.+++|+ ++++|++|+.||.|++||+.+++.+..+.
T Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 293 ----GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp ----TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred ----CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 334444544321 133458888999 78999999999999999999998877776
Q ss_pred C-------------------------------------CccCeeeEEEcCC--CCEEEEecCCCcEEeec
Q 019006 316 G-------------------------------------HTGSVNESVFHAT--EPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 316 ~-------------------------------------h~~~v~~~~~~~~--~~~l~s~s~D~~i~i~~ 346 (347)
+ |...|++++|+++ +.+|+|++.||.|+||.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6 8899999999998 78999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=305.78 Aligned_cols=287 Identities=20% Similarity=0.299 Sum_probs=234.0
Q ss_pred CeeEecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEE--eCcccceeEEEEcC-CCCEEEEecCCCeE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTT-DGSQIISASPDKTL 124 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~dg~i 124 (347)
....+.+|...|++++|+|++ ++||+|+.||.|++|++.... ....+ .+|...|.+++|+| ++.+|++++.|+.|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 345778999999999999999 999999999999999996432 22333 47999999999999 77999999999999
Q ss_pred EEEECCCCceeeeeecc---CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCC-eE
Q 019006 125 RAWDVETGKQIKKMAEH---NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASD-KI 199 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l 199 (347)
++||+.+ ..+..+..+ ...+..+++++.+ .++++|+.|+.|++||++ +..+..+ .+...|.+++|+|+++ .+
T Consensus 144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 9999986 444555443 3668888888765 588999999999999995 4455444 4667899999999999 89
Q ss_pred EEEecCCcEEEEeCCC----CceEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 200 YTGGIDNDVKVWDLRK----GEVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
++++.|+.|++||+++ +.....+ +|...|.+++|+| ++++|++++.|+.|++||++...... .+..|...
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~ 295 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD----QIIIHPHR 295 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS----EEEECCBC
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc----cccccccc
Confidence 9999999999999987 5555555 6889999999999 99999999999999999998654322 22222110
Q ss_pred -------------cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCCEEEEecCC
Q 019006 275 -------------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 275 -------------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
....+..++|+|+|++ +|+.||.|++||+.+++++..+.+ |.+.+..++|+|++++|++++ |
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence 0124455677777777 888999999999999999999987 456778889999999999997 9
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
+.|++||+
T Consensus 373 ~~i~iw~~ 380 (383)
T 3ei3_B 373 FNILIWNR 380 (383)
T ss_dssp TEEEEEEC
T ss_pred CcEEEEec
Confidence 99999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=312.49 Aligned_cols=291 Identities=21% Similarity=0.321 Sum_probs=224.4
Q ss_pred eEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEE
Q 019006 51 MLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAW 127 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iw 127 (347)
....+|...|++|+|+| ++.+||+|+.||+|+|||+.... .....+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 45667899999999999 56799999999999999986432 33445678999999999998 68899999999999999
Q ss_pred ECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCC-eEEEEec
Q 019006 128 DVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD-KIYTGGI 204 (347)
Q Consensus 128 d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 204 (347)
|++++........+ ...+.++.+++++ .++++|+.||.|++||++.........+...|.+++|+|++. .+++++.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 99875433222222 2334556666654 689999999999999997654333334667899999999876 6778999
Q ss_pred CCcEEEEeCCCCceEE---EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc--ccce
Q 019006 205 DNDVKVWDLRKGEVSM---TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNL 279 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~---~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~ 279 (347)
|+.|++||+++.+... ...+|...|++++|+|++++|++++.|+.|++||++... +...+..|.... ....
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD----CPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS----SEEEECCCCCCCCSSSCC
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc----cceEEeccccccccccee
Confidence 9999999998765433 335788999999999999999999999999999998532 233333332211 1123
Q ss_pred EEEEECCCCCEEEEee------------CCCeEEEEeCCCceeeEEec-CCccCeeeE-EEcCCCCEEEEecCCCcEEee
Q 019006 280 LKCGWSPDGSKVTAGS------------SDRMVYIWDTTSRRILYKLP-GHTGSVNES-VFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs------------~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~-~~~~~~~~l~s~s~D~~i~i~ 345 (347)
..+.|+|++.++++++ .++.|++||..+++++..+. +|...|.++ +|+|++.+|++++ |++|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 3455666666666553 34679999999999988764 688889887 6999999999876 8899999
Q ss_pred cC
Q 019006 346 EI 347 (347)
Q Consensus 346 ~~ 347 (347)
++
T Consensus 427 ~~ 428 (435)
T 4e54_B 427 SQ 428 (435)
T ss_dssp CC
T ss_pred EC
Confidence 85
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=303.02 Aligned_cols=292 Identities=16% Similarity=0.293 Sum_probs=238.4
Q ss_pred eEecCccccEEEEEECCCCC-eEEEeeC---CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC---CCEEEEecCCCe
Q 019006 51 MLLTGHQSAVYTMKFNPAGT-VIASGSH---DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD---GSQIISASPDKT 123 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~-~l~s~~~---d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~ 123 (347)
..+.+|...|++++|+|++. ++++|+. |+.|++|++...........+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45678999999999999996 4556665 9999999997544333344579999999999998 699999999999
Q ss_pred EEEEECCCCc-eeeeeeccCcceeEeecC-----CCCCCEEEEEcCCCceEEEeCCCCC-ceeecCC-----CCceEEEE
Q 019006 124 LRAWDVETGK-QIKKMAEHNSFVNSCCPS-----RRGPPLVVSGSDDGTAKLWDMRQRG-AIQTFPD-----KYQITAVS 191 (347)
Q Consensus 124 i~iwd~~~~~-~~~~~~~~~~~v~~~~~~-----~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~-----~~~v~~~~ 191 (347)
|++||+.+++ .+..+..|...+..+.+. ..+..++++++.|+.|++||++.+. .+..+.. ...+.++.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999887 778888899888887432 2334689999999999999999876 5555432 23688888
Q ss_pred ----EcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC---CCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 192 ----FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP---DGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 192 ----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~---~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
|++++..+++++.||.|++||+++++.... ..|...|.+++|+| +++++++++.|+.|++||++........
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 788999999999999999999998876444 56788999999999 9999999999999999999754322211
Q ss_pred e-EEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCCc-------------------eeeEEecCCccCeee
Q 019006 265 V-KILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSR-------------------RILYKLPGHTGSVNE 323 (347)
Q Consensus 265 ~-~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~ 323 (347)
. ..+..| ...+.+++|+|+++ +|++|+.||.|++||+..+ +.+..+.+|...|.+
T Consensus 251 ~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 251 ASVSEKAH----KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp EEEEEECC----SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred eeeccCCC----cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 1 112233 45799999999998 8999999999999998753 467788999999999
Q ss_pred EEEcCCCCEEE-EecCCCcEEeecC
Q 019006 324 SVFHATEPVIG-SCSSDKQIYLGEI 347 (347)
Q Consensus 324 ~~~~~~~~~l~-s~s~D~~i~i~~~ 347 (347)
++|+|++++|+ +++.|+.|++||+
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEcCCCCeEEEEecCCCcEEEEEC
Confidence 99999999998 8999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=307.34 Aligned_cols=279 Identities=16% Similarity=0.284 Sum_probs=246.1
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
|.+.|++++|+|++++|++|+.||.|++|+.. ......+.+|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 78899999999999999999999999999953 3456678899999999999999999999999999999999999888
Q ss_pred eeeeccCcc---------------eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeE
Q 019006 136 KKMAEHNSF---------------VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKI 199 (347)
Q Consensus 136 ~~~~~~~~~---------------v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 199 (347)
..+..+... +..+.+.+. ..+++++.++.|++||++++..+..+. +...+.+++|+|+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 877766554 666666654 468899999999999999887776664 56789999999999999
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
++++.|+.|++||+++++....+..|...|.+++|+|++ ++++++.|+.|++||++. ......+..| ...+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~----~~~i 333 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ----NTLLALSIVD----GVPI 333 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT----TEEEEEEECT----TCCE
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC----CcEeEecccC----CccE
Confidence 999999999999999999888999999999999999999 999999999999999874 3445555544 3578
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCce--------------------eeEEecCCcc--CeeeEEEcCCCCEEEEec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSRR--------------------ILYKLPGHTG--SVNESVFHATEPVIGSCS 337 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~--------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~s 337 (347)
.+++|+|++++|++|+.||.|++||+.+++ ++..+.+|.. .|..++|+|++++|++++
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence 899999999999999999999999999888 8899999977 999999999999999999
Q ss_pred CCCcEEeecC
Q 019006 338 SDKQIYLGEI 347 (347)
Q Consensus 338 ~D~~i~i~~~ 347 (347)
.||.|++|++
T Consensus 414 ~dg~i~iw~~ 423 (425)
T 1r5m_A 414 SLQEGSVVAI 423 (425)
T ss_dssp SSSCCEEEEC
T ss_pred cCceEEEEee
Confidence 9999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=313.51 Aligned_cols=286 Identities=14% Similarity=0.228 Sum_probs=244.8
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccC---CCeeeEEEeCcccceeEEEEcCC-CCEEEEecCCCeEEEEEC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG---DCKNFMVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDV 129 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~ 129 (347)
..|...|++++|+|++++|++|+.||.|++|++.. .......+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 36899999999999999999999999999999965 23356678899999999999998 899999999999999999
Q ss_pred CCCc------eee---eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-------CCceEEEEEc
Q 019006 130 ETGK------QIK---KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-------KYQITAVSFS 193 (347)
Q Consensus 130 ~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~ 193 (347)
.+++ ... ....|...+..+++++.+..++++++.|+.|++||++++..+..+.. ...+.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 8876 322 23567788999999988678999999999999999998887776654 5679999999
Q ss_pred CCC-CeEEEEecCC---cEEEEeCCCC-ceEEEec-CCCCceeEEEECC-CCCEEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 194 DAS-DKIYTGGIDN---DVKVWDLRKG-EVSMTLQ-GHQDMITGMSLSP-DGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 194 ~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
|++ ..+++++.|+ .|++||++++ .....+. +|...|.+++|+| ++++|++++.|+.|++||++.. ..+.
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~----~~~~ 299 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA----EQLS 299 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----CEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----ccce
Confidence 997 5889999998 9999999986 5666777 8999999999999 8999999999999999998753 4456
Q ss_pred EEeccccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEec------------------------------
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLP------------------------------ 315 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~------------------------------ 315 (347)
.+..|. ..+.+++|+|++ .+|++++.||.|++||+.+........
T Consensus 300 ~~~~~~----~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (416)
T 2pm9_A 300 QFPARG----NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH 375 (416)
T ss_dssp EEECSS----SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC
T ss_pred eecCCC----CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc
Confidence 666553 468889999999 899999999999999998765432221
Q ss_pred -----CCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 316 -----GHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 316 -----~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.|...+..++|+|++++|++++.|++|+||++
T Consensus 376 ~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 16778889999999999999999999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=293.17 Aligned_cols=283 Identities=19% Similarity=0.318 Sum_probs=244.2
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEe--CcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLK--GHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
...+|...|.+++|+|++++|++++ ||.|++|++.... .....+. +|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3458999999999999999999999 9999999986432 2233333 789999999999999999999999999999
Q ss_pred ECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 128 DVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 128 d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
|+.+++ ....+..|...+..+++.+.+ .++++++.|+.|++||+++++.+..+. +...+.+++|+|+++.+++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 998876 556677788888888888764 578899999999999999888777765 4678999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
||.|++||+++++....+. +...+.+++|+|+++++++++.|+.|++||++... ...+..| ...+.+++|
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~----~~~v~~~~~ 273 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----KYQLHLH----ESCVLSLKF 273 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----EEEECCC----SSCEEEEEE
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-----eEEEcCC----ccceeEEEE
Confidence 9999999999988777765 66789999999999999999999999999997532 1233333 457899999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++++|++++.||.|++||+.+++.+.. ..|...|..++|+|++++|++++.||.|++|++
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999988754 458889999999999999999999999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=301.32 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=242.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+..|...|++++|+|++++||+|+.|+.|++|++.+.. .....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456799999999999999999999999999999996542 2566788999999999999999999999999999999998
Q ss_pred CCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eee--cCCCCceEEEEEcCCCCeEEEEe
Q 019006 131 TGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQT--FPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 131 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
+++.... +..|...+..+.+++.+ .++++++.|+.|++||++.+.. ... ..+...+.+++|+|++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 8764433 35677888889888765 6889999999999999987763 222 23567899999999999999999
Q ss_pred cCCcEEEEeCC------------------CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 204 IDNDVKVWDLR------------------KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 204 ~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.||.|++||++ .++....+..|...|.+++|+|++++|++++.|+.|++||++.. .++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~ 237 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----MAV 237 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----TEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cee
Confidence 99999999953 57788888899999999999999999999999999999999743 455
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--cee--------------------------------e
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--RRI--------------------------------L 311 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--~~~--------------------------------~ 311 (347)
..+..| ...+.+++|+|++.+|++| .|+.|++|++.. +.. .
T Consensus 238 ~~~~~~----~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 238 ATLASE----TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp EEEECS----SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred EEEccC----CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 566554 3468999999999999888 899999999987 421 0
Q ss_pred ------EEe-cCCccCeeeEEEc-CCC---CEEEEecCCCcEEeecC
Q 019006 312 ------YKL-PGHTGSVNESVFH-ATE---PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ------~~~-~~h~~~v~~~~~~-~~~---~~l~s~s~D~~i~i~~~ 347 (347)
..+ .+|...|++++|+ +++ .+|+|++.||.|++||+
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 233 4999999999977 555 89999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=304.71 Aligned_cols=246 Identities=27% Similarity=0.491 Sum_probs=225.5
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
...+.+|..+|++++|+|++.+|++|+.||+|++||+.+++....+..|...|.++++++.+ .++++|+.|++|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence 34678999999999999999999999999999999999999999999999999999998765 58999999999999999
Q ss_pred CCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 173 RQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 173 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
.+...+..+. +...|.+++|+|++.++++|+.|+.|++||++++.+...+.+|...|.++.|+|+++++++++.|+.|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 9888777765 556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCC--------------------CCEEEEeeCCCeEEEEeCCCceee
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD--------------------GSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+||++. ..+...+..|. ..+.+++|+|+ |.+|++|+.||.|++||+.++.++
T Consensus 260 vwd~~~----~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 260 VWVVAT----KECKAELREHR----HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EEETTT----CCEEEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEECCC----CceeeEecCCC----ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 999974 34455565553 56889999996 679999999999999999999999
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=289.56 Aligned_cols=280 Identities=20% Similarity=0.268 Sum_probs=240.3
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+...+.+|.+.|++++| |++.+|++|+.||.|++|++.. ......+..|...|.+++|+|++++|++++.||.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 345678999999999999 9999999999999999999954 45556778899999999999999999999999999999
Q ss_pred ECCCC---ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcC-CCCeEEEE
Q 019006 128 DVETG---KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSD-ASDKIYTG 202 (347)
Q Consensus 128 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~ 202 (347)
++... +.+..+..|...+..+.+. +.++++++.|+.|++|| .+.....+ .+...+.++.+.+ +++.++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 98654 4566777888888888872 45899999999999999 34444444 4567899999987 88999999
Q ss_pred ecCCcEEEEeCCCCceEEEecC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
+.||.|++|| ..+....+.. |...+.+++|+|++. +++++.|+.|++||++.. ..+..+..| ...+.+
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~----~~~~~~~~~----~~~i~~ 230 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG----DVLRTYEGH----ESFVYC 230 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC----CEEEEEECC----SSCEEE
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch----hhhhhhhcC----CceEEE
Confidence 9999999999 4455666666 888999999999988 999999999999999753 445566655 357899
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|+|++ .|++|+.||.|++||+.+++++..+..|...|..++|+|+++ +++++.||.|++||+
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 9999999 689999999999999999999999999999999999999998 567999999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=295.15 Aligned_cols=246 Identities=18% Similarity=0.285 Sum_probs=208.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee---eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN---FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.|...|.+++|+|++ .|++|+.||+|++||+...... ...+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 6789999999999999643221 234568999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEEEEcCCC-CeEEEEecCCc
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFSDAS-DKIYTGGIDND 207 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~~~dg~ 207 (347)
++.+..+..|...|..+.+++.+..++++++.|++|++||+++++....+. +...+.+++|+|++ .++++|+.||.
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999999999999999999888899999999999999999988877664 33568999999864 57789999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
|++||+++++.+.++.+|...|++++|+|++ ++|++++.|++|++||++.. .+ ..+.+| ...|.+++|+|
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~----~~-~~~~~H----~~~V~~v~~sp 309 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS----EL-FRSQAH----RDFVRDATWSP 309 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC----EE-EEECCC----SSCEEEEEECS
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----cE-EEEcCC----CCCEEEEEEeC
Confidence 9999999999999999999999999999997 57999999999999998742 23 234555 35799999999
Q ss_pred CCC-EEEEeeCCCeEEEEeCCCcee
Q 019006 287 DGS-KVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 287 ~g~-~l~sgs~dg~i~vwd~~~~~~ 310 (347)
+++ +|++||.||.|++|++.+..+
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 986 577999999999999987544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=311.31 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=226.5
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
.+..|.+.|++++|+|++++||+|+.|+.|++|++.... .....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 455677899999999999999999999999999997532 4455678999999999999999999999999999999998
Q ss_pred CCc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc---eeecC--CCCceEEEEEcCCCCeEEEE
Q 019006 131 TGK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTFP--DKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 131 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~~~ 202 (347)
+++ ....+..|...+..+++++++ .++++++.|+.|++||++.+.. ...+. +...+.+++|+|++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 876 566677888999999998865 5788999999999999987762 44443 67789999999999999999
Q ss_pred ecCCcEEEEeCC------------------CCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 203 GIDNDVKVWDLR------------------KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 203 ~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
+.|+.|++||++ .++....+ +|...|.+++|+|++++|++++.|+.|++||++........
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 24455566 89999999999999999999999999999999865432222
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce-----------------------------------
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR----------------------------------- 309 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~----------------------------------- 309 (347)
+..+..| ...+.+++|+|++++|++|+.++.+ +|+.....
T Consensus 244 ~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 244 LITVKLS----QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp CCCEECS----SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eEeecCC----CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 4445554 3568999999999999999877766 66554111
Q ss_pred ----eeE-------------EecCCccCeeeEEEcCCCC----EEEEecCCCcEEeecC
Q 019006 310 ----ILY-------------KLPGHTGSVNESVFHATEP----VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 310 ----~~~-------------~~~~h~~~v~~~~~~~~~~----~l~s~s~D~~i~i~~~ 347 (347)
... ....|.+.|+++++.+... .|+|+|.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 0113999999999776653 5999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=310.12 Aligned_cols=285 Identities=19% Similarity=0.356 Sum_probs=243.7
Q ss_pred ccccEEEEEECCCCC-eEEEe----------eCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 56 HQSAVYTMKFNPAGT-VIASG----------SHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 56 h~~~V~~v~~~~~~~-~l~s~----------~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
+...|.+++|+|+++ +||+| +.|+.|++|++..... .......|...|.+++|+|++++|++++.||.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 445788999999987 99999 8999999999864321 11222368899999999999999999999999
Q ss_pred EEEEECCC----CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC------ceee----cCCCCceEE
Q 019006 124 LRAWDVET----GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG------AIQT----FPDKYQITA 189 (347)
Q Consensus 124 i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~------~~~~----~~~~~~v~~ 189 (347)
|++||+.+ .+.+..+..|...+..+.+++.+..++++++.|+.|++||+++.. .... ..+...+.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 357778888999999999988766789999999999999998775 2222 235568999
Q ss_pred EEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEecCC------CCceeEEEECCCC-CEEEEEcCCC---cEEEEeCCCC
Q 019006 190 VSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGH------QDMITGMSLSPDG-SYLLTNGMDC---KLCIWDMRPY 258 (347)
Q Consensus 190 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~v~~~~~~-~~l~t~~~d~---~i~~wd~~~~ 258 (347)
++|+|+ +..+++++.|+.|++||+++++....+..| ...|.+++|+|++ .++++++.|+ .|++||++..
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 999999 788999999999999999999988888776 7889999999997 6899999998 9999999853
Q ss_pred CCcCceeEEEe-ccccccccceEEEEECC-CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC-CEEEE
Q 019006 259 APQNRCVKILE-GHQHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE-PVIGS 335 (347)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 335 (347)
. .....+. +| ...+.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++
T Consensus 251 ~---~~~~~~~~~~----~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 251 N---TPLQTLNQGH----QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp T---SCSBCCCSCC----SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred C---CCcEEeecCc----cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 2 2223333 33 35789999999 99999999999999999999999999999999999999999999 89999
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
++.|+.|++|++
T Consensus 324 ~~~d~~i~iw~~ 335 (416)
T 2pm9_A 324 ASFDNKIEVQTL 335 (416)
T ss_dssp CCSSSEEEEEES
T ss_pred EecCCcEEEEEc
Confidence 999999999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=306.08 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=222.0
Q ss_pred ccEEEEEECCCCCeEEEeeCCC-------cEEEEeccCCCe---------eeEEEeCcccceeEEEEcCCCCEEEEe---
Q 019006 58 SAVYTMKFNPAGTVIASGSHDR-------DIFLWHVHGDCK---------NFMVLKGHKNAILDLHWTTDGSQIISA--- 118 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~-------~v~~w~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~--- 118 (347)
-+|++++|+|++++||+||.|. .|++|++..... ....+.+|.+.|.+++++ ++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998654 499999864321 113467888889988776 4456654
Q ss_pred --------cCCCeEEEEECCCCceeee---------eeccCcceeEeecCCCCCCEE-EEEcCCCceEEEeCCCCCceee
Q 019006 119 --------SPDKTLRAWDVETGKQIKK---------MAEHNSFVNSCCPSRRGPPLV-VSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 119 --------~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~-~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
+.|+.+|+|++........ ...+..++..++++|++..++ ++++.|++|++||++++..+..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4578899999865432111 112334577788998876653 3556899999999999988888
Q ss_pred cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCC----cEEEEe
Q 019006 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDC----KLCIWD 254 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~----~i~~wd 254 (347)
+.+...|.+++|+|+++++++++.+ .+++|+..+++... ....|...|.+++|+|+++++++++.|+ .+++||
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 8888899999999999999998855 56777777666543 3456888899999999999999998887 688888
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe-cCCccCeeeEEEcCCCCEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL-PGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l 333 (347)
+............+.+| ...|.+++|+|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|+|++++|
T Consensus 252 ~~~~~~~~~~~~~~~~~----~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNR----FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EETTEEEEEEEEEEESS----CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred cccceecceeeeeecCC----CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 76432111112233333 357899999999999999999999999999999999875 7999999999999999999
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
||+|.|++|+||||
T Consensus 328 aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 328 ASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTSEEEEEEC
T ss_pred EEEeCCCeEEEEEc
Confidence 99999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=290.46 Aligned_cols=246 Identities=23% Similarity=0.413 Sum_probs=223.1
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.||...|.+++|+|++.++++++.|++|++||+.. .+....+..|...+.+++|+|++++|++++.||.|++|++.
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC-CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 35789999999999999999999999999999999964 45566788899999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+++....+..+...+..+++++++ .++++|+.|+.|++||+++++.+..+. +...|.+++|+|++++|++|+.|+.|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 153 SGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 999888888888889999998875 588999999999999999988887775 456899999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||+++++....+.+|...|.+++|+|++++|++++.|++|++||++. ..++..+.+|. ..+.+++|+|+++
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~h~----~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT----RTCVHTFFDHQ----DQVWGVKYNGNGS 303 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCCS----SCEEEEEECTTSS
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC----CEEEEEEcCCC----CcEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999874 45566666653 5799999999999
Q ss_pred EEEEeeCCCeEEEEeCC
Q 019006 290 KVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~ 306 (347)
+|++++.||.|++||..
T Consensus 304 ~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 304 KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCeEEEEeCC
Confidence 99999999999999963
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=287.91 Aligned_cols=254 Identities=26% Similarity=0.460 Sum_probs=210.1
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRA 126 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~i 126 (347)
+..+.+|.+.|++++|+|+|++||+|+.|++|++|++.+. .+....+.+|...|.+++|+++ +++|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3567899999999999999999999999999999998642 3456788999999999999863 889999999999999
Q ss_pred EECCCCc--eeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCc---eeecCCCCceEEEEEcCC-----
Q 019006 127 WDVETGK--QIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGA---IQTFPDKYQITAVSFSDA----- 195 (347)
Q Consensus 127 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~----- 195 (347)
||+.+++ .+..+..|...+.++++++.. ..++++++.|++|++||++.... .....+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998774 455667788899999998762 46899999999999999986532 222345678999999997
Q ss_pred --------CCeEEEEecCCcEEEEeCCCCc----eEEEecCCCCceeEEEECCCC---CEEEEEcCCCcEEEEeCCCCCC
Q 019006 196 --------SDKIYTGGIDNDVKVWDLRKGE----VSMTLQGHQDMITGMSLSPDG---SYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 196 --------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~~---~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
++.|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ ++|++++.|++|++||++....
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998765 566788999999999999984 8999999999999999875321
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.. ....+.. ..+...+.+++|+|+|++|++|+.||.|++|+..
T Consensus 242 ~~-~~~~~~~--~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PW-KKTLLKE--EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CC-EEEESSS--SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cc-ceeeeec--ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11 1112211 1234679999999999999999999999999975
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=299.84 Aligned_cols=281 Identities=20% Similarity=0.306 Sum_probs=242.3
Q ss_pred CccccEEEEEECCCCC-eEEEeeCCCcEEEEec----cCCCe-----eeEEEeC----------cccceeEEEEcCCCCE
Q 019006 55 GHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHV----HGDCK-----NFMVLKG----------HKNAILDLHWTTDGSQ 114 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~----~~~~~-----~~~~~~~----------h~~~v~~~~~~~~~~~ 114 (347)
.|.+.|++++|+|+++ +||+|+.||.|++|++ ..... ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4559999999999999 9999999999999999 54331 2333333 6889999999999999
Q ss_pred EEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-c-------
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-Q------- 186 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~------- 186 (347)
|++++.||.|++|| .+++.+..+..|...+..+++.+.+ .++++++.|+.|++||+.++..+..+.... .
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 99999999999999 6677888888899999999998765 578899999999999999888777665432 2
Q ss_pred --------eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 187 --------ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 187 --------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
+.++.|+++ ..+++++.+|.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||++..
T Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 888899886 56889999999999999999888899999999999999999999999999999999998753
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
.....+..| ...+.+++|+|++ +|++++.||.|++||+.+++.+..+..|...|..++|+|++++|++++.
T Consensus 280 ----~~~~~~~~~----~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 280 ----NSQNCFYGH----SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp ----SCSEEECCC----SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred ----ccceEecCC----CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence 334445444 3578999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecC
Q 019006 339 DKQIYLGEI 347 (347)
Q Consensus 339 D~~i~i~~~ 347 (347)
||.|++||+
T Consensus 351 dg~i~i~~~ 359 (425)
T 1r5m_A 351 DGQVNVYDL 359 (425)
T ss_dssp TSCEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=296.30 Aligned_cols=281 Identities=20% Similarity=0.386 Sum_probs=235.3
Q ss_pred ecCcccc--EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 53 LTGHQSA--VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 53 ~~~h~~~--V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+|... +.++.|++ ..+++++.|+.|++|+.............|...|.+++|+|++++|++++.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3477665 44566654 5688899999999999965433322333488999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeec-CCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+++.+..+..|...+..+.+. +.++++|+.|+.|++||++. ......+ .+...+.+++|+|++..+++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 999999999999999988883 46899999999999999984 4444444 466789999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCC-EEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
++||+++++....+..|...|.+++|+|++. .+++++ .|+.|++||++.. .+...+.. ...+.+++|+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~----~~~~~~~~-----~~~v~~~~~s 312 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG----ARVNTVDA-----GSQVTSLIWS 312 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC----CEEEEEEC-----SSCEEEEEEC
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC----CEEEEEeC-----CCcEEEEEEC
Confidence 9999999999999999999999999999765 555554 7999999999743 34444432 2468999999
Q ss_pred CCCCEEEE--eeCCCeEEEEeCCCceee--EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 286 PDGSKVTA--GSSDRMVYIWDTTSRRIL--YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 286 ~~g~~l~s--gs~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++++|++ |+.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++|++
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999999 558999999999986554 457899999999999999999999999999999985
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=291.28 Aligned_cols=283 Identities=13% Similarity=0.180 Sum_probs=242.6
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--eeeEEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--KNFMVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 128 (347)
...+|.+.|++++|+|++++|++++.|+.|++|++.... .....+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999997543 12445668999999999999999 999999999999999
Q ss_pred C-CCCceeeeeec--cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC---------CCceeecCCCCceEEEEEcCCC
Q 019006 129 V-ETGKQIKKMAE--HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ---------RGAIQTFPDKYQITAVSFSDAS 196 (347)
Q Consensus 129 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~ 196 (347)
+ .+++. ..+.. |...+..+++.+ ..++++++.|+.|++||+++ ...+..+.+...+.+++|++++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 9 77654 66777 888999998887 56899999999999999987 7777777778889999999876
Q ss_pred CeEEEEecCCcEEEEeCCC-Cc--eEEEecCCCCceeEEEECC-CCCEEEEEcCCCcEEEEeCCCC--CCcCceeEEEec
Q 019006 197 DKIYTGGIDNDVKVWDLRK-GE--VSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCKLCIWDMRPY--APQNRCVKILEG 270 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~i~~wd~~~~--~~~~~~~~~~~~ 270 (347)
+++++.|+.|++||+++ +. .......|...+.+++|+| +++++++++.||.+++||++.. .........+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999988 54 3344556788899999999 9999999999999999999754 111234455665
Q ss_pred cccc-----cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-ccCeeeEEEcCCCCEEEEecCCCc
Q 019006 271 HQHN-----FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-TGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 271 ~~~~-----~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
|... ....+.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|.+++ |++.+|++++.||.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 5321 1237999999999999999999999999999999999999998 99999999 99999999999998
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=294.77 Aligned_cols=294 Identities=24% Similarity=0.306 Sum_probs=235.1
Q ss_pred CeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCeee-EEE-----------eCcccceeEEEEcC-CCCE
Q 019006 49 PIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNF-MVL-----------KGHKNAILDLHWTT-DGSQ 114 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~-~~~-----------~~h~~~v~~~~~~~-~~~~ 114 (347)
....+.+|.+.|++++|+| ++++||+|+.||.|++|++....... ... .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4557789999999999999 99999999999999999996432211 111 25999999999999 7789
Q ss_pred EEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCC--CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEE
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR--GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVS 191 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~ 191 (347)
|++++.||.|++||+.+++....+. +...+..+.+.+. +..++++++.|+.|++||++++..+..+. +...+.+++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999988776665 4555666666554 33489999999999999999888777765 567899999
Q ss_pred EcCCCCe-EEEEecCCcEEEEeCCCCc-eEEEe---------------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 192 FSDASDK-IYTGGIDNDVKVWDLRKGE-VSMTL---------------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 192 ~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
|+|++.. +++++.||.|++||++.+. ....+ ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 9999985 8899999999999998765 33333 56888999999999999999999999999999
Q ss_pred CCCCCCcCceeEEEecccccc-ccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNF-EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
++....... ...+.... ............+..+++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|
T Consensus 274 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 274 SSNGENTLV----NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp TTTCCBCCC----CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred CCCCcccee----ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 986432211 11111000 1111111223345667777889999999999999999999999999999999999999
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
++++.||.|++||+
T Consensus 350 ~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 350 YSGSRDCNILAWVP 363 (408)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEECCCCeEEEEeC
Confidence 99999999999984
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=295.06 Aligned_cols=275 Identities=21% Similarity=0.418 Sum_probs=230.8
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
.++.|+|+++ ++||+|. |++|++||.... ......+.+|...|++|+|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999975 5787765 899999998643 223334567888999999999999999999999999999999999999
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc-eeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA-IQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
+..|...+.++.+. +.++++|+.|+.+++||.+.... +..+ .+...+..+.+++++..+++++.|+.+++||..+
T Consensus 185 ~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 99999888877664 35899999999999999886443 3333 4567899999999999999999999999999987
Q ss_pred Cc----eEEEecCCCCceeEEEECCCCC-EEEE--EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 216 GE----VSMTLQGHQDMITGMSLSPDGS-YLLT--NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 216 ~~----~~~~~~~~~~~i~~v~~~~~~~-~l~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
++ .......|...|.+++|+|.+. .+++ |+.|+.|++||++. ..+...+..+ ..+.++.|+|++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t----~~~~~~~~~~-----~~v~~~~~~~~~ 332 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS----GACLSAVDAH-----SQVCSILWSPHY 332 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT----TEEEEEEECS-----SCEEEEEEETTT
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc----cccceeeccc-----cceeeeeecCCC
Confidence 64 3456677889999999999765 4444 45799999999974 3444444433 457889999999
Q ss_pred CEEEEee--CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 SKVTAGS--SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~~l~sgs--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..|++++ .||.|++||+.+++++.++.+|.+.|++++|+|++++|+|+|.|++|+|||+
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 9988765 7999999999999999999999999999999999999999999999999986
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=289.56 Aligned_cols=251 Identities=23% Similarity=0.414 Sum_probs=202.4
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 128 (347)
.+.+|.+.|++++|+|+|++||+|+.|++|++|++.... .....+.+|...|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999996432 24567899999999999986 488999999999999999
Q ss_pred CCCCc--eeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCce---eec-CCCCceEEEEEcCC------
Q 019006 129 VETGK--QIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAI---QTF-PDKYQITAVSFSDA------ 195 (347)
Q Consensus 129 ~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~------ 195 (347)
+.+++ ....+..|...|.++++++.. ..++++|+.|++|++||++.+... ..+ .+...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98763 456677888999999998863 468999999999999999865422 222 34567889999987
Q ss_pred -----------CCeEEEEecCCcEEEEeCCCC---ceEEEecCCCCceeEEEECCCC----CEEEEEcCCCcEEEEeCCC
Q 019006 196 -----------SDKIYTGGIDNDVKVWDLRKG---EVSMTLQGHQDMITGMSLSPDG----SYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 196 -----------~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~v~~~~~~----~~l~t~~~d~~i~~wd~~~ 257 (347)
+.+|++|+.|+.|++||++.. +....+.+|...|.+++|+|++ ++|++++.|++|++||+..
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999755 4566788999999999999986 8899999999999999875
Q ss_pred CCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
..........+..| ...+.+++|+|+|++|++|+.||.|++|+..
T Consensus 248 ~~~~~~~~~~~~~~----~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKF----NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEEC----SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcC----CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 32111111223333 4679999999999999999999999999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=312.37 Aligned_cols=287 Identities=13% Similarity=0.115 Sum_probs=218.4
Q ss_pred EecCccccEEEEEECCC------CCeEEEeeCCCcEEEEeccCCC----------eeeEEEeCcccceeEEEEcCCCCEE
Q 019006 52 LLTGHQSAVYTMKFNPA------GTVIASGSHDRDIFLWHVHGDC----------KNFMVLKGHKNAILDLHWTTDGSQI 115 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~------~~~l~s~~~d~~v~~w~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l 115 (347)
.+.+|.+.|.+|+|+|+ +.+||+|+.||+|++|++.... .+...+.+|...|++++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 45678899999999997 5799999999999999986432 122467899999999999986 489
Q ss_pred EEecCCCeEEEEECCCCc-eeeeeeccCcceeEee--cCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC---CCceEE
Q 019006 116 ISASPDKTLRAWDVETGK-QIKKMAEHNSFVNSCC--PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD---KYQITA 189 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~--~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~ 189 (347)
++|+.||+|++||+.++. ....+..|...|.+++ +.+.+..++++|+.|++|++||+++.+....+.. ...+.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999998764 3445778999999883 4443337899999999999999987665444322 124788
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
++|+|++..+++++.|++|++||++++.+...+.+|...|++++|+|++++|++|+.|++|++||+... .....+
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-----~~~~~~ 435 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-----LLHGIK 435 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-----TTTCC-
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-----hccccc
Confidence 999999999999999999999999999888888899999999999999999999999999999997532 111111
Q ss_pred ccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCC-CceeeEEecCCccCeeeEEEcCCCC---EEEEecCCCcEEe
Q 019006 270 GHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT-SRRILYKLPGHTGSVNESVFHATEP---VIGSCSSDKQIYL 344 (347)
Q Consensus 270 ~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~s~D~~i~i 344 (347)
.+. ......+++++|+|+|+.+. ...+ +++|+.. ++.++..+.+|...|++|+|+|+++ ++|+++.||.|+|
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred cCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 000 00112467899999998553 2222 3344433 4667778999999999999999965 9999999999999
Q ss_pred ecC
Q 019006 345 GEI 347 (347)
Q Consensus 345 ~~~ 347 (347)
|++
T Consensus 513 w~l 515 (524)
T 2j04_B 513 EYL 515 (524)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=297.25 Aligned_cols=284 Identities=19% Similarity=0.406 Sum_probs=227.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC----------eeeEEEeCcc------------cceeEEEEcCCC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----------KNFMVLKGHK------------NAILDLHWTTDG 112 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----------~~~~~~~~h~------------~~v~~~~~~~~~ 112 (347)
.|.+.|++++|+|+|++||+|+.||.|++|++.... .....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468899999999999999999999999999986432 1356788998 889999999998
Q ss_pred --CEEEEecCCCeEEEEECCCCcee---------------------------------------ee-eeccCcceeEeec
Q 019006 113 --SQIISASPDKTLRAWDVETGKQI---------------------------------------KK-MAEHNSFVNSCCP 150 (347)
Q Consensus 113 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~ 150 (347)
.+|++++.|++|++||+.+++.. .. ...|...|.++++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764331 11 2467888999999
Q ss_pred CCCCCCEEEEEcCCCceEEEeCCC-CCceee-------c-CCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCCCce--
Q 019006 151 SRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQT-------F-PDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRKGEV-- 218 (347)
Q Consensus 151 ~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~-------~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-- 218 (347)
++++ .++++| .|++|++||++. +..+.. + .+...|.+++|+|++ ..+++|+.||.|++||+++++.
T Consensus 186 ~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 8865 578888 799999999983 333332 1 456679999999998 8999999999999999998876
Q ss_pred --EEEecCCCC------------ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc--------
Q 019006 219 --SMTLQGHQD------------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE-------- 276 (347)
Q Consensus 219 --~~~~~~~~~------------~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------- 276 (347)
...+.+|.. .|.+++|+|++++|++++. +.|++||++.. ..++..+..|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~---~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME---NRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC---SSCSCCEESCGGGTTTHHHHHHT
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC---ccccceeeccccccccccccccc
Confidence 677888876 8999999999999999998 99999999741 234445555532111
Q ss_pred ---cceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC---------------------------------CccC
Q 019006 277 ---KNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG---------------------------------HTGS 320 (347)
Q Consensus 277 ---~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---------------------------------h~~~ 320 (347)
..+..++|+|++++|++|+.||.|++||+.+++.+ .+.+ +...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 01345899999999999999999999999988765 3332 3456
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|..++|||++.+||+++.|+ +++|.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eeEEEECCCCCEEEEEecce-eeeec
Confidence 88999999999999999886 66653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=278.25 Aligned_cols=274 Identities=20% Similarity=0.385 Sum_probs=225.7
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.+.|+||+++ +||+| .|++|++||.... ......+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999876 77766 4999999998643 2223345678889999999999999999999999999999999999999
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce-ee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI-QT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 216 (347)
..|...+..+... +.++++++.++.+++|+....... .. ..+...+..+.+.++++.+++++.|+.|++||++++
T Consensus 106 ~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 9898877766553 358999999999999998765433 33 345678999999999999999999999999999876
Q ss_pred ce----EEEecCCCCceeEEEECCCCCEE---EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 217 EV----SMTLQGHQDMITGMSLSPDGSYL---LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 217 ~~----~~~~~~~~~~i~~v~~~~~~~~l---~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+. ......|...|.++.++|++..+ ++++.++.|++||.+... ...... ....+..+.|+|++.
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----~~~~~~-----~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVD-----AHSQVCSILWSPHYK 253 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----EEEEEE-----CSSCEEEEEEETTTT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----cccccc-----ceeeeeeeeeccccc
Confidence 53 34456677889999999976643 466788999999987432 222222 134678889999999
Q ss_pred EEEEee--CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 290 KVTAGS--SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|++++|+|+|.||+|+|||+
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 887654 7999999999999999999999999999999999999999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=280.87 Aligned_cols=250 Identities=20% Similarity=0.299 Sum_probs=208.8
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEE
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG--KQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iw 170 (347)
..+.+|...|.+++|+|+|++|++|+.|++|++||+... +.+..+..|...|.++++.++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456799999999999999999999999999999999743 567788899999999998754 35789999999999999
Q ss_pred eCCCCC--ceeec-CCCCceEEEEEcCC--CCeEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCC------
Q 019006 171 DMRQRG--AIQTF-PDKYQITAVSFSDA--SDKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPD------ 237 (347)
Q Consensus 171 d~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~------ 237 (347)
|++++. .+..+ .+...|.+++|+|+ +..|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 33333 35678999999997 7899999999999999998763 24567889999999999997
Q ss_pred -------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC---CEEEEeeCCCeEEEEeCCC
Q 019006 238 -------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG---SKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 238 -------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~ 307 (347)
+++|++++.|+.|++||++...........+.+|. ..|.+++|+|++ .+|++|+.|+.|++||+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~----~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC----CceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 57999999999999999975432223445566653 579999999995 8999999999999999876
Q ss_pred ce---eeEEe--cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 308 RR---ILYKL--PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 ~~---~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.. ....+ .+|...|..++|+|++++||+++.|++|+||+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 43 11223 578899999999999999999999999999973
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=283.14 Aligned_cols=252 Identities=23% Similarity=0.456 Sum_probs=213.2
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
++..+.+|...|.+++|+|++++|++|+.|++|++||+.. .+....+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4567899999999999999999999999999999999964 456677899999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCC-----CCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRG-----PPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 202 (347)
+. ++.+..+..|...+..+.+.+.. ..++++++.|++|++||+++......+ .+...|.+++|+|++.+|+++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 86 45667788888888888877642 347999999999999999987766655 456789999999999999999
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc----ccccccc
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH----QHNFEKN 278 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (347)
+.||.|++||+++++....+..+ ..|.+++|+|++.++++++.+ .+++|++... .....+..+ .......
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~----~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ----YLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTE----EEEEEECCCCTTCCGGGCCC
T ss_pred eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC----eeeeccCccccccccCcCcc
Confidence 99999999999999888888764 579999999999999888755 5999998642 223333222 1122456
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
+.+++|+|||++|++|+.||.|++||+.++
T Consensus 289 v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 889999999999999999999999998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=287.93 Aligned_cols=248 Identities=21% Similarity=0.333 Sum_probs=207.1
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe---eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK---NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...+|...|.+++|+|++.+| +++.||+|++||+..... ......+|...|.+++|+|++++|++++.|++|++||
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 445799999999999998654 678899999999854321 1234568999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEEEEcCCC-CeEEEEec
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFSDAS-DKIYTGGI 204 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~~~ 204 (347)
+.+++.+..+..|...+..+++++.+..++++++.|++|++||+++++....+. +...+.+++|+|++ .++++|+.
T Consensus 168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 999999999999999999999988877789999999999999999887665543 44579999999985 57888999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
|+.|++||+++++....+.+|...|++++|+|++ ++|++++.|++|++||++. .+++..+ +| ...|.+++
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~----~~~~~~~-~H----~~~V~~va 318 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF----SEVFRDL-SH----RDFVTGVA 318 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS----CEEEEEC-CC----SSCEEEEE
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC----CcEeEEC-CC----CCCEEEEE
Confidence 9999999999999999999999999999999987 5799999999999999874 2333332 33 46799999
Q ss_pred ECC-CCCEEEEeeCCCeEEEEeCCCce
Q 019006 284 WSP-DGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 284 ~s~-~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
|+| ++.+|++|+.||.|++|++.+..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 998 79999999999999999987643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=325.81 Aligned_cols=293 Identities=25% Similarity=0.390 Sum_probs=243.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.+|.+.|++++|+|+|++||+|+.||+|++|+... ......+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 356789999999999999999999999999999999964 4556778899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCc
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
.+++.+..+..|...+..+.+.+. +..++++|+.|+.|++||++++..+..+. +...|.+++|+|+++.+++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999998875 34588999999999999999988877664 5678999999999999999999999
Q ss_pred EEEEeCCCCceEEEe-------------------------------------------------------cCCCCceeEE
Q 019006 208 VKVWDLRKGEVSMTL-------------------------------------------------------QGHQDMITGM 232 (347)
Q Consensus 208 i~iwd~~~~~~~~~~-------------------------------------------------------~~~~~~i~~v 232 (347)
|++||+++++....+ .+|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999998766433221 2677789999
Q ss_pred EECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--------------------------------------
Q 019006 233 SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-------------------------------------- 274 (347)
Q Consensus 233 ~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-------------------------------------- 274 (347)
+|+|+++++++++.|+.|++||+... .....+.+|...
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 922 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL 922 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc
Confidence 99999999999999999999998742 222223222110
Q ss_pred -------------------------------------cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 275 -------------------------------------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 275 -------------------------------------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
....+.+++|+|+++++++|+.||.|++||+.+++.+..+.+|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC
Confidence 0112445566666666666666666666666777777888899
Q ss_pred ccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 318 TGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 318 ~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
...|.+++|+|++++|++++.||.|++||+
T Consensus 1003 ~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 1003 KKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp SSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 999999999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=280.90 Aligned_cols=246 Identities=22% Similarity=0.445 Sum_probs=216.2
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
....+.+|...|.+++|+|++++|++++.||+|++||+.+++.+..+..|...+..+++++.+ .++++|+.|+.+++||
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEE
Confidence 345788999999999999999999999999999999999999998898999999999998875 5889999999999999
Q ss_pred CCCCCc----eeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC
Q 019006 172 MRQRGA----IQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246 (347)
Q Consensus 172 ~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~ 246 (347)
+.+... ...+ .+...+.++.|++++ .+++++.|+.|++||+++++....+.+|...|.+++|+|+++++++++.
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 986532 2222 456689999998765 5899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec--CCccCeeeE
Q 019006 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP--GHTGSVNES 324 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~ 324 (347)
|+.|++||++. ..+...+.+|. ..+.+++|+|++++|++|+.||.|++||+.+++.+..+. .+...|..+
T Consensus 205 d~~v~~wd~~~----~~~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 205 DASAKLWDVRE----GMCRQTFTGHE----SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp TSCEEEEETTT----CSEEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CCcEEEEECCC----CeeEEEEcCCc----CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 99999999974 34556666653 578999999999999999999999999999988776664 334579999
Q ss_pred EEcCCCCEEEEecCCCcEEeecC
Q 019006 325 VFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+|++++|++++.|+.|++||+
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEET
T ss_pred EECCCCCEEEEECCCCeEEEEEc
Confidence 99999999999999999999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=284.95 Aligned_cols=289 Identities=18% Similarity=0.271 Sum_probs=221.8
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC---eeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLR 125 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~ 125 (347)
..+.+|.+.|++++|+|++++||+|+.||.|++|++.... .....+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 3678999999999999999999999999999999996432 34556789999999999999 699999999999999
Q ss_pred EEECCCC---------ceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeec--------------
Q 019006 126 AWDVETG---------KQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTF-------------- 181 (347)
Q Consensus 126 iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~-------------- 181 (347)
+||+.++ +.+..+..|...+..+++.+.. ..++++++.|+.|++||++++..+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 4466777888999999998763 468899999999999999877654332
Q ss_pred CCCCceEEEEEcCC---CCeEEEEecCCcEEEEeCCCCce--EEEecCCCCceeEEEECCCC----CEEEEEcCCCcEEE
Q 019006 182 PDKYQITAVSFSDA---SDKIYTGGIDNDVKVWDLRKGEV--SMTLQGHQDMITGMSLSPDG----SYLLTNGMDCKLCI 252 (347)
Q Consensus 182 ~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~----~~l~t~~~d~~i~~ 252 (347)
.+...+.++.|+|+ +..+++++.++.+.+|+...++. ...+.+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 24457899999997 88999999999998888877764 66788899999999999998 89999999999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe----eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG----SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg----s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 328 (347)
||++....... .... .........++....++.+ .....+.+|+....+.+..+.+|...|++++|+|
T Consensus 245 wd~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKLSPLA----SEES----LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred EeCCCCcCccc----cCCc----ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 99975322111 1100 1112222233333333333 3456677888888888999999999999999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
++++|++++.||.|++||+
T Consensus 317 ~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp SSCCEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCcEEEEec
Confidence 9999999999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=281.75 Aligned_cols=280 Identities=17% Similarity=0.295 Sum_probs=237.4
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
-|.+.|.+++|+|+|+.++++..++.+..|..... .......+|...|.+++|+|++++|++++ ||.|++||+.+++.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc-cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 35678999999999999999988887777755432 23334558999999999999999999999 99999999987653
Q ss_pred eee---ee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC--ceeec-CCCCceEEEEEcCCCCeEEEEecCC
Q 019006 135 IKK---MA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG--AIQTF-PDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 135 ~~~---~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
... +. .|...+..+++++++ .++++++.|+.|++||+.++. ....+ .+...+.+++|+|+++.+++++.||
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 322 22 577889999998865 578899999999999998776 33333 3556799999999999999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|++||+++++....+..|...|.+++|+|+++++++++.|+.|++||++.. .....+. ....+.+++|+|
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~-----~~~~v~~~~~s~ 234 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----RQLQQHD-----FTSQIFSLGYCP 234 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEE-----CSSCEEEEEECT
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC----ceEeeec-----CCCceEEEEECC
Confidence 9999999999999999999999999999999999999999999999999743 3333332 235688999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++++|++++.||.|++||+.+++.. .+.+|...|..++|+|++++|++++.||.|++||+
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 9999999999999999999988754 67899999999999999999999999999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=283.95 Aligned_cols=294 Identities=19% Similarity=0.279 Sum_probs=239.7
Q ss_pred cCeeEecCccccEEEEEECCC---CCeEEEeeCCCcEEEEeccC-CCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 48 SPIMLLTGHQSAVYTMKFNPA---GTVIASGSHDRDIFLWHVHG-DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~---~~~l~s~~~d~~v~~w~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
.++..+.+|.+.|++++|+|+ |++|++|+.||.|++|++.. .......+.+|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 345678899999999999999 69999999999999999975 33333678899999999999999999999999999
Q ss_pred EEEEECCCCceeeeeeccCcceeEeec--CCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCP--SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
|++||+.+++... +..|...+..+.+ .+. ..++++++.|+.|++||+++++.+..+.....+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEE
Confidence 9999999887655 5568888888888 554 3578999999999999999998888887777777777764 58889
Q ss_pred EecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCE----EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-
Q 019006 202 GGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSY----LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN- 274 (347)
Q Consensus 202 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~----l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~- 274 (347)
++.++.+++||++......... .+...+.++++.++... +++++.|+.|++||++.... ......+..|...
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNG 264 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC-
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeeccc
Confidence 9999999999998765443322 23344566666555544 99999999999999985421 1334445554321
Q ss_pred -------cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 275 -------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 275 -------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
....+.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|+..+.++
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 012689999999999999999999999999999999999999999999999999999999999987655443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=290.17 Aligned_cols=284 Identities=16% Similarity=0.212 Sum_probs=235.1
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+| ..+....|+|++++||+|+.||.|++|++.. ......+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 344 4455557899999999999999999999863 34455567999999999999999999999999999999999999
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC----CCc---------------------eE
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD----KYQ---------------------IT 188 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~----~~~---------------------v~ 188 (347)
.+..+..|...+.++++++++ .++++++.|++|++||+++++.+..+.. ... +.
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 888999999999999998865 5788999999999999998887766642 223 34
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
+++|+|++.++++++.||.|++||+++++....+. .|...|.+++|+|+++ +|++++.||.|++||++... ..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---~~~~ 328 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE---CPVG 328 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc---Cchh
Confidence 45567889999999999999999999988777664 4788999999999998 99999999999999998542 2234
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc---------eeeEEecCCccCeeeEEEcCCCC---EEE
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR---------RILYKLPGHTGSVNESVFHATEP---VIG 334 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~---~l~ 334 (347)
.+..+. ...+..+ +.+++++|++++.||.|++||+... .....+.+|.+.|..++|+|+++ .++
T Consensus 329 ~~~~~~---~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 329 EFLINE---GTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp EEEEST---TSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred hhhccC---CCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 444432 2356666 4568899999999999999998763 22335678899999999999999 788
Q ss_pred EecCCCcEEeecC
Q 019006 335 SCSSDKQIYLGEI 347 (347)
Q Consensus 335 s~s~D~~i~i~~~ 347 (347)
+++.+|.+.+|++
T Consensus 405 a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 405 EVGKNNFCALYNL 417 (420)
T ss_dssp EEETTTEEEEEES
T ss_pred EEcCCceEEEEec
Confidence 8889999999975
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=281.59 Aligned_cols=262 Identities=21% Similarity=0.353 Sum_probs=206.7
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..+|...|.+++|+|++++||+|+.|+++++|+..... .....+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 47899999999999999999999999999999986432 34567889999999999999999999999999999999987
Q ss_pred Cc---eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--eeec-CCCCceEEEEEcCCCCeEEEEecC
Q 019006 132 GK---QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQTF-PDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 132 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+. .+..+..|...+..+++++.+ .++++|+.|++|++||.+.+.. ...+ .+...|.+++|+|++++|++++.|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 64 345667788889999998876 4788999999999999987643 2334 456789999999999999999999
Q ss_pred CcEEEEeCCCC---------------ceEEEecC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 206 NDVKVWDLRKG---------------EVSMTLQG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 206 g~i~iwd~~~~---------------~~~~~~~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
++|++||.... ++...+.+ |...|.+++|+|++..|++++.|+.|++|+.............+.
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999996321 22334444 788999999999999999999999999999875432222111111
Q ss_pred cc-ccccccceEEEEECCCC-CEEEEeeCCCeEEEEeCCCceeeEEec
Q 019006 270 GH-QHNFEKNLLKCGWSPDG-SKVTAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 270 ~~-~~~~~~~~~~~~~s~~g-~~l~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
.+ ...+...|.+++|+|++ .+||+|+.||.|++|++.+++.+...+
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 11 11224679999999998 499999999999999999887765543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=290.27 Aligned_cols=280 Identities=23% Similarity=0.405 Sum_probs=237.6
Q ss_pred eeEecCccccE-EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 50 IMLLTGHQSAV-YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 50 ~~~~~~h~~~V-~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...+.+|...| .++.+ ++++|++|+.||+|++|++.. .+....+.+|...|.+++|++++ +|++|+.||+|++||
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 45788998875 66666 578999999999999999864 45667889999999999999987 999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCC-CCCCEEEEEcCCCceEEEeCCCCCcee-----------------------ec-CC
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSR-RGPPLVVSGSDDGTAKLWDMRQRGAIQ-----------------------TF-PD 183 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~s~~~d~~i~iwd~~~~~~~~-----------------------~~-~~ 183 (347)
+.+++.+..+..|...+..+.+.+ .+..++++|+.|++|++||+++..... .+ .+
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 999999999988999998887764 344689999999999999998765321 11 23
Q ss_pred CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 184 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
...+.++ +++++.+++++.||.|++||+++++....+.+|...|.+++|+|+++++++++.|+.|++||++. ..
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~~ 343 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN----GE 343 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT----TE
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----Cc
Confidence 3345554 56789999999999999999999999999999999999999999999999999999999999974 35
Q ss_pred eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 264 CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
++..+.+|. ..+.+++|+ +.+|++|+.||.|++||+.++...... .|...+..++|++++.++++++ |+.|+
T Consensus 344 ~~~~~~~h~----~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 344 LMYTLQGHT----ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp EEEEECCCS----SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred EEEEEeCCC----CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 566666653 467888887 589999999999999999988776655 3667788899999999999998 99999
Q ss_pred eecC
Q 019006 344 LGEI 347 (347)
Q Consensus 344 i~~~ 347 (347)
+||+
T Consensus 416 iwd~ 419 (464)
T 3v7d_B 416 IYNL 419 (464)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=300.11 Aligned_cols=288 Identities=19% Similarity=0.339 Sum_probs=252.2
Q ss_pred cCeeEecCcccc-EEEEEECC--CCCeEEEeeCCCcEEEEeccC-------CCeeeEEEeCcccceeEEEEcCCCCEEEE
Q 019006 48 SPIMLLTGHQSA-VYTMKFNP--AGTVIASGSHDRDIFLWHVHG-------DCKNFMVLKGHKNAILDLHWTTDGSQIIS 117 (347)
Q Consensus 48 ~~~~~~~~h~~~-V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 117 (347)
.+...+.+|... |++++|+| ++++||+|+.||.|++|++.. .......+.+|...|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 356778999999 99999999 999999999999999999942 23445677889999999999999999999
Q ss_pred ecCC----CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCC---ceEE
Q 019006 118 ASPD----KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKY---QITA 189 (347)
Q Consensus 118 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~v~~ 189 (347)
++.+ +.|++|| .++.+..+..|...+..+.+++.+..++++++.|+.|++||+.+.+.+..+. +.. .+.+
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 211 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence 9988 6888887 5667788889999999999999887789999999999999999888877776 445 7999
Q ss_pred EEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEe-c---CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 190 VSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTL-Q---GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 190 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
++|+|+ ++++++++.||.|++||+++++....+ . .|...|.+++|+ ++++|++++.|+.|++||++. ...
T Consensus 212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~----~~~ 286 (615)
T 1pgu_A 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT----SKC 286 (615)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT----TEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC----CcE
Confidence 999999 999999999999999999999988888 6 899999999999 999999999999999999874 344
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
...+..+.......+..+.|+ ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| |+ +++++.||.|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIME 361 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence 555655543445667788885 8999999999999999999999999999999999999999 77 888888888888
Q ss_pred ecC
Q 019006 345 GEI 347 (347)
Q Consensus 345 ~~~ 347 (347)
|++
T Consensus 362 w~~ 364 (615)
T 1pgu_A 362 WSS 364 (615)
T ss_dssp TTT
T ss_pred EEc
Confidence 874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=296.21 Aligned_cols=278 Identities=16% Similarity=0.208 Sum_probs=228.9
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.+++++|+|++++|++|+.|+.|++|+.... .....+..| ..+....|++++++|++++.||.|++||+.+++....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 3457899999999999999999999998532 222223344 34455578999999999999999999999998888777
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (347)
..|...+.++++++++ .++++|+.|++|++||+++++.+..+. +...|.+++|+|++..+++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 8899999999998875 588999999999999999888777765 56789999999999999999999999999999998
Q ss_pred eEEEecCC---C---------------------CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc
Q 019006 218 VSMTLQGH---Q---------------------DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 218 ~~~~~~~~---~---------------------~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
....+..| . ..+.+++|+|++++|++++.||.|++||++.. .....+..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~--- 287 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK----EQTIQLPS--- 287 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC----CEEEEECC---
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC----ceeEEccc---
Confidence 88887653 2 44555667899999999999999999999753 22233322
Q ss_pred ccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCCcee-eEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 274 NFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSRRI-LYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~~~-~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.....+.+++|+|+++ +|++|+.||.|++||+.+++. +..+.+ |...|..+.| +++.+|++++.|+.|++|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 1245799999999999 999999999999999998754 677777 5666777755 57789999999999999984
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=310.27 Aligned_cols=288 Identities=22% Similarity=0.353 Sum_probs=250.7
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
....+.+|.+.|.+++|+|++++||+|+.||.|++|++.. ......+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3467899999999999999999999999999999999854 456677889999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-Cceeec-CCCCceEEEEEcC-CCCeEEEEecC
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTF-PDKYQITAVSFSD-ASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d 205 (347)
+.+++.+..+..|...+..+++++++ .++++++.||+|++||+.++ .....+ .+...+.+++|+| ++..+++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999998876 47889999999999999876 344444 3567899999999 78899999999
Q ss_pred CcEEEEeCCCCceEEEecCCC-CceeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQ-DMITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~-~~i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
|.|++||++.+.....+..+. ..+..++|+| +++++++++.|+.|++||++. ......+..|. ..+.++
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~----~~v~~~ 234 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCVATLEGHM----SNVSFA 234 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT----TEEEEEEECCS----SCEEEE
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC----CcEEEEEcCCC----CCEEEE
Confidence 999999998887777766554 7899999999 999999999999999999874 34455565553 568899
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE-EEEecCCCcEEeec
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV-IGSCSSDKQIYLGE 346 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~D~~i~i~~ 346 (347)
+|+|++++|++|+.||.|++||..+++.+..+..|...+..++|+|++.. +++++.|+.+.+|+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999873 24455566666665
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=286.13 Aligned_cols=271 Identities=27% Similarity=0.481 Sum_probs=236.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
..+|...|++++| +++.|++|+.||.|++||... .+....+.+|...|.+++| ++++|++|+.||.|++||+.++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 3467788999887 799999999999999999864 4556778899999999999 6889999999999999999999
Q ss_pred ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce---eec-CCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI---QTF-PDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+.+..+..|...+..+.+.+ .++++|+.|+.|++||++++... ..+ .+...+.++.+ +++.+++|+.||.|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 99999999999998888753 48999999999999999877654 222 45678999998 67899999999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
++||+++++....+.+|...|.++.| +++++++++.||.|++||++. ..++..+.+|. ..+.+++| ++
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~~~~--~~ 346 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC----GACLRVLEGHE----ELVRCIRF--DN 346 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----CCEEEEECCCS----SCEEEEEC--CS
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC----CCEEEEEeCCc----CcEEEEEe--cC
Confidence 99999999999999999999999998 478999999999999999984 34566666653 46778877 78
Q ss_pred CEEEEeeCCCeEEEEeCCCce---------eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRR---------ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+|++|+.||.|++||+.++. .+..+.+|.+.|.+++| ++..|++++.||+|++||+
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 999999999999999998766 78899999999999999 6788999999999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=276.42 Aligned_cols=247 Identities=22% Similarity=0.420 Sum_probs=216.0
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
....+.+|...|.+++|+|++++|++|+.||+|++||..+++....+..+...+..+.+++.+ .++++|+.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEE
Confidence 345788999999999999999999999999999999999988888888888889999998876 5889999999999999
Q ss_pred CCCCCc------eee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC--CCCEEE
Q 019006 172 MRQRGA------IQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP--DGSYLL 242 (347)
Q Consensus 172 ~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~--~~~~l~ 242 (347)
+..... ... ..+...+.++.|+|++..+++++.|++|++||+++++....+.+|...|.+++|+| ++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 864321 112 23566799999999999999999999999999999999999999999999999987 468999
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC--ccC
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH--TGS 320 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~ 320 (347)
+++.|+.|++||++. ..++..+..|. ..+.+++|+|++.+|++|+.|+.|++||++.++.+..+..+ ...
T Consensus 215 sgs~Dg~v~~wd~~~----~~~~~~~~~h~----~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRS----GQCVQAFETHE----SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEETTSCEEEEETTT----CCEEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEeCCCeEEEEECCC----CcEEEEecCCC----CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 999999999999985 34566666653 57899999999999999999999999999988877666544 347
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 321 VNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+..++|+|++.+|++++.|++|++||+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 899999999999999999999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=270.80 Aligned_cols=249 Identities=26% Similarity=0.457 Sum_probs=218.2
Q ss_pred eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
.....+.+|...|.+++|+|++++|++++.||.|++|++.+++....+..|...+..+++++++ .++++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEE
Confidence 3445688999999999999999999999999999999999999888888999999999998865 688999999999999
Q ss_pred eCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 171 DMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 171 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
|++++..+..+. +...+.++.|+|+++++++++.|+.|++||+++++....+..|...|.+++|+|+++++++++.|+.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 999988877765 5568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee--eEEE-
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN--ESVF- 326 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~--~~~~- 326 (347)
|++||++.. ..+..+... ....+..++|+|++++|++++.||.|++||+.+++.+..+.+|...+. ...|
T Consensus 173 i~~wd~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 173 CRIWDTASG----QCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEEEETTTC----CEEEEECCS---SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EEEEECCCC----ceeeEEecc---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 999999753 233333221 134678899999999999999999999999999999999999976543 2334
Q ss_pred cCCCCEEEEecCCCcEEeecC
Q 019006 327 HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+++.+|++++.||.|++||+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEET
T ss_pred eCCCcEEEEECCCCEEEEEEC
Confidence 467889999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=297.91 Aligned_cols=297 Identities=15% Similarity=0.246 Sum_probs=244.3
Q ss_pred CCcCeeEecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCccc---ceeEEEEcCC-CCEEEEecC
Q 019006 46 LESPIMLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKN---AILDLHWTTD-GSQIISASP 120 (347)
Q Consensus 46 ~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~~~ 120 (347)
...++..+.+|...|.+++|+|+++ +|++++.|+.|++|+.. ..+....+.+|.. .|.+++|+|+ +++|++++.
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 3445677889999999999999998 89999999999999985 4456677889999 9999999999 999999999
Q ss_pred CCeEEEEECCCCceeeee-e---ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-----CceEEEE
Q 019006 121 DKTLRAWDVETGKQIKKM-A---EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-----YQITAVS 191 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~ 191 (347)
||.|++||+.+++.+..+ . .|...+..+.+. +..++++++.|+.|++||+++++.+..+... ..+.++.
T Consensus 228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred CCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 999999999999988888 5 788889999888 5578999999999999999988877766543 4677777
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCC---------------------------------C
Q 019006 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD---------------------------------G 238 (347)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~---------------------------------~ 238 (347)
+. ++..+++++.||.|++||+++++....+.+|...|.+++| |+ +
T Consensus 306 ~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~ 383 (615)
T 1pgu_A 306 AT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 383 (615)
T ss_dssp EE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred eC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence 75 8899999999999999999988888888777766666666 44 5
Q ss_pred CEEEEEcCCCcEEEEeCCCCCC------------------------------c---------------------------
Q 019006 239 SYLLTNGMDCKLCIWDMRPYAP------------------------------Q--------------------------- 261 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~~~~~------------------------------~--------------------------- 261 (347)
+.+++++.|+.+++||+..... .
T Consensus 384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (615)
T 1pgu_A 384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463 (615)
T ss_dssp TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence 6666777777777776542110 0
Q ss_pred --CceeEEEe--------ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcC--
Q 019006 262 --NRCVKILE--------GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHA-- 328 (347)
Q Consensus 262 --~~~~~~~~--------~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~-- 328 (347)
...+..+. .........+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+ |...|++++|+|
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcc
Confidence 00000000 01112245789999999999999999999999999999999999988 999999999999
Q ss_pred --------CCCEEEEecCCCcEEeecC
Q 019006 329 --------TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 --------~~~~l~s~s~D~~i~i~~~ 347 (347)
++++|++++.||.|++||+
T Consensus 544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 544 KGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp ------CCSCCEEEEEETTSCEEEEES
T ss_pred ccccccccCCCEEEEEcCCCcEEEEEC
Confidence 9999999999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=286.46 Aligned_cols=256 Identities=27% Similarity=0.409 Sum_probs=213.3
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC------CeeeEEEeCcccceeEEEEcCCC-CEEEEecCCC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD------CKNFMVLKGHKNAILDLHWTTDG-SQIISASPDK 122 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg 122 (347)
...+.+|...|.+++|+|+|++||+|+.|+.+++|++... ......+.+|...|.++.|+|++ ..|++|+.|+
T Consensus 101 ~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~ 180 (380)
T 3iz6_a 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180 (380)
T ss_dssp EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS
T ss_pred ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCC
Confidence 4567899999999999999999999999999999998532 11234578999999999999964 5799999999
Q ss_pred eEEEEECCCCceeeee-----eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeecC-CCCceEEEEEcCC
Q 019006 123 TLRAWDVETGKQIKKM-----AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFP-DKYQITAVSFSDA 195 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~ 195 (347)
+|++||+.+++.+..+ ..|...+..+.+.+.+..++++|+.|++|++||++. ...+..+. +...|.+++|+|+
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 9999999999887766 457778888888777778999999999999999984 45555554 5678999999999
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCCC-------CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-------DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
+.+|++|+.||+|++||+++++....+..+. ..|++++|+|++++|++++.||.|++||+... .....+
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~----~~~~~~ 336 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA----EMVLNL 336 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC----CEEEEE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC----ceEEEE
Confidence 9999999999999999999998877775543 24899999999999999999999999998643 333334
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
......+...|.+++|+|+|++|++|+.||.|++|++...+
T Consensus 337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 22222235678999999999999999999999999987653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=307.82 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=137.9
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
..|...|.+++|+| |++|++++.|++|++||+... +....+. |...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 35888999999999 889999999999999999643 3344444 66889999999999999999999999999999876
Q ss_pred ee-----------eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC------------------
Q 019006 134 QI-----------KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK------------------ 184 (347)
Q Consensus 134 ~~-----------~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~------------------ 184 (347)
.. ..+..|...|.++++++.+..++++|+.|++| +||++++..+..+..+
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 53 22345778899999998766688999999999 9999988777665433
Q ss_pred -CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE
Q 019006 185 -YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 185 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (347)
..|.+++|+|++.+|++++.||.|++||+++++...
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 569999999999999999999999999998776543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=279.11 Aligned_cols=239 Identities=25% Similarity=0.526 Sum_probs=205.4
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.|++++|+|+|++||+|+.|+.|++||+.. .+....+.+|...|.+++|+|++++|++++.|++|++||+.+++....+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 499999999999999999999999999964 4566778999999999999999999999999999999999998876666
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--------CCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--------PDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
. +...+..+++++.+..++++|+.|++|++||++++..+..+ .+...|.+++|+|++.++++|+.|+.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 4 44567778888766789999999999999999988776554 34567999999999999999999999999
Q ss_pred EeCCCC------------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 211 WDLRKG------------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 211 wd~~~~------------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
||+++. .+...+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+.+|. ..
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~----~~~~~~l~~h~----~~ 354 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS----GNPLLMLQGHR----NS 354 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT----CCEEEEEECCS----SC
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC----CeEEEEECCCC----CC
Confidence 999753 34567788999999999999999999999999999999874 34556677664 46
Q ss_pred eEEEEECC------CCCEEEEeeCCCeEEEEeCCC
Q 019006 279 LLKCGWSP------DGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 279 ~~~~~~s~------~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+.+++|++ ++.+|++|+.||.|++|++..
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 88888875 789999999999999999754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=279.70 Aligned_cols=280 Identities=26% Similarity=0.489 Sum_probs=243.2
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+..+.+|.+.|.+++|+ +..|++|+.||+|++|++.. ......+.+|...|.++.|+ ++.+++++.||.|++||
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD 225 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence 345678999999999997 67999999999999999964 45667788999999999996 56899999999999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCc
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
+.+++.+..+..|...+.++.+ ++.++++|+.|+.|++||++++..+..+. +...+.++.| ++..+++++.||.
T Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 226 IETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300 (445)
T ss_dssp SSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred CCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence 9999999999899999888877 34578999999999999999888877775 4567999998 6789999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
|++||+++++....+.+|...+.++.+ +++++++++.||.|++||++. ..+...+..+. .....+.+++|+
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~-~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT----GQCLQTLQGPN-KHQSAVTCLQFN-- 371 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT----CCEEEEECSTT-SCSSCEEEEEEC--
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC----CcEEEEEccCC-CCCCCEEEEEEC--
Confidence 999999999999999999999988887 467999999999999999974 34455555422 124578888885
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEe-----cCCccCeeeEEEcCCCCEEEEecCCCc----EEeecC
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKL-----PGHTGSVNESVFHATEPVIGSCSSDKQ----IYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~D~~----i~i~~~ 347 (347)
+++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.++++++.||+ |.+||+
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 689999999999999999999998887 578899999999999999999999998 999985
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=278.92 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=201.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEEe
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iwd 171 (347)
.+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++ .+..+..|...|..+++.++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 457899999999999999999999999999999998764 45678889999999998653 356899999999999999
Q ss_pred CCCCC--ceeec-CCCCceEEEEEcCC--CCeEEEEecCCcEEEEeCCCCce---EEEecCCCCceeEEEECCC------
Q 019006 172 MRQRG--AIQTF-PDKYQITAVSFSDA--SDKIYTGGIDNDVKVWDLRKGEV---SMTLQGHQDMITGMSLSPD------ 237 (347)
Q Consensus 172 ~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~v~~~~~------ 237 (347)
++++. ....+ .+...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98763 33344 35678999999998 77999999999999999987532 3456788889999999997
Q ss_pred -----------CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC----CEEEEeeCCCeEEE
Q 019006 238 -----------GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG----SKVTAGSSDRMVYI 302 (347)
Q Consensus 238 -----------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----~~l~sgs~dg~i~v 302 (347)
+++|++++.|+.|++||++... ...+...+.+| ...|.+++|+|++ .+|++|+.||.|++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h----~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAH----SDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCC----SSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccC----CCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 4789999999999999986321 11234445555 3579999999987 89999999999999
Q ss_pred EeCCCc---e-eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 303 WDTTSR---R-ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 303 wd~~~~---~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
||+.+. . ....+.+|...|++++|+|++++||+++.|++|+||+.
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 998762 1 22345678999999999999999999999999999973
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=278.50 Aligned_cols=275 Identities=28% Similarity=0.494 Sum_probs=237.5
Q ss_pred CeeEecCccccE-EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 49 PIMLLTGHQSAV-YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 49 ~~~~~~~h~~~V-~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+...+.+|.+.| .++. +++++|++|+.||+|++|++.. .+....+.+|...|.+++|+ ++++++++.||+|++|
T Consensus 110 ~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 456789999875 5554 5689999999999999999963 45567788999999999998 5699999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|+.+++.+..+..|...+..+.+. +..+++|+.|++|++||+.+++.+..+. +...+.++.+ ++..+++++.||
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred ECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 999999999999999999888774 3579999999999999999888777664 5568999998 678999999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|++||+++++....+.+|...|.+++| +++++++++.|+.|++||++. ..++..+.+|. ..+..+.+
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~----~~v~~~~~-- 327 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET----GNCIHTLTGHQ----SLTSGMEL-- 327 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT----CCEEEEECCCC----SCEEEEEE--
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC----CCEEEEEcCCc----ccEEEEEE--
Confidence 9999999999999999999999999999 789999999999999999975 34455565553 34555544
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++.+|++|+.||.|++||+.+++.+..+.+ |...|.+++|+ +.+|++++.||.|++||+
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 678999999999999999999999988886 88899999996 579999999999999985
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=277.02 Aligned_cols=255 Identities=26% Similarity=0.452 Sum_probs=213.3
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRA 126 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~i 126 (347)
+..+.+|.+.|++++|+|++++||+|+.||.|++|++... ......+.+|...|.+++|+++ +++|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 4568899999999999999999999999999999999632 3445678899999999999977 899999999999999
Q ss_pred EECCCCc--eeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCce---eecCCCCceEEEEEcC------
Q 019006 127 WDVETGK--QIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAI---QTFPDKYQITAVSFSD------ 194 (347)
Q Consensus 127 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~------ 194 (347)
||+.+++ .+..+..|...+..+++++.. ..++++++.|+.|++||++..... ....+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999886 666777788899999998873 468999999999999999876432 2235667899999999
Q ss_pred -------CCCeEEEEecCCcEEEEeCCCCc----eEEEecCCCCceeEEEECCC---CCEEEEEcCCCcEEEEeCCCCCC
Q 019006 195 -------ASDKIYTGGIDNDVKVWDLRKGE----VSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 195 -------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~v~~~~~---~~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
++..+++++.||.|++||++++. ....+.+|...|.+++|+|+ +++|++++.||.|++||++....
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 68999999999999999998764 44577889999999999999 89999999999999999986432
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.. ....... ......+.+++|+|+|++|++++.||.|++|++..
T Consensus 244 ~~-~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PW-KKTLLKE--EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CC-EEEESSS--SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cc-eeeeecc--ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 11 1111111 12346799999999999999999999999999873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=278.85 Aligned_cols=279 Identities=22% Similarity=0.427 Sum_probs=233.4
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEc--CCCCEEEEecCCCeEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT--TDGSQIISASPDKTLRA 126 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~i 126 (347)
.+..+.+|.+.|.+++|+|++ .|++|+.||+|++|++.. ......+.+|...|.+++|+ +++.+|++++.||.|++
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC-CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 456678999999999999988 999999999999999964 45667788999999999998 57789999999999999
Q ss_pred EECCCCce-----------------------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-
Q 019006 127 WDVETGKQ-----------------------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP- 182 (347)
Q Consensus 127 wd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~- 182 (347)
||+.++.. +..+..|...+..+.. ...++++|+.|+.|++||+++++.+..+.
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99987653 2334456666655532 24689999999999999999888887775
Q ss_pred CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 183 DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 183 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
+...+.+++|+|+++.+++|+.||.|++||+++++....+.+|...|.+++|+ ++++++++.||.|++||++...
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--- 383 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--- 383 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---
Confidence 56789999999999999999999999999999999999999999999999997 5899999999999999997532
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE-ecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK-LPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
...... + ...+..++|+|++++|++|+ ||.|++||+.+++++.+ +.+|...|++++|+ +..++++++.|+.
T Consensus 384 -~~~~~~-~----~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 384 -RKFSYH-H----TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp -EEEEEE-C----TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTE
T ss_pred -eeeeec-C----CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCe
Confidence 111111 1 23466778999999999999 89999999999999875 77899999999998 5567777777887
Q ss_pred EEee
Q 019006 342 IYLG 345 (347)
Q Consensus 342 i~i~ 345 (347)
+.+|
T Consensus 456 ~~i~ 459 (464)
T 3v7d_B 456 SFLE 459 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=270.93 Aligned_cols=253 Identities=21% Similarity=0.364 Sum_probs=199.7
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
+...+.+|...|.+++|+|++.+|++|+.|++|++||+.. ......+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 4567889999999999999999999999999999999964 345667899999999999999999999999999999999
Q ss_pred CCCCceeeeee---ccCcceeEeecCCCC---------CCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCC
Q 019006 129 VETGKQIKKMA---EHNSFVNSCCPSRRG---------PPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDA 195 (347)
Q Consensus 129 ~~~~~~~~~~~---~~~~~v~~~~~~~~~---------~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~ 195 (347)
+.... ..... .|...+..+.+.+.. ..++++++.|++|++||.. ......+ .+...|.+++|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 147 ILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp SSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTT
T ss_pred ccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCC
Confidence 87433 22222 567778888887764 2589999999999999954 3333333 46678999999999
Q ss_pred CCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--
Q 019006 196 SDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-- 272 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-- 272 (347)
+++|++|+.||.|++||++.. .....+. +...|.+++|+|++.++++ +.|+.|++||+....... ...+....
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~--~~~~~~~~~~ 300 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAP--VCTIEAEPIT 300 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCS--EEECCCCSGG
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCc--eEEeecCcch
Confidence 999999999999999999543 3333332 4456999999999987765 458889999987543221 11222100
Q ss_pred -----cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 273 -----HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 273 -----~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
......+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 012356899999999999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=267.66 Aligned_cols=247 Identities=20% Similarity=0.321 Sum_probs=201.5
Q ss_pred eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeee-ec-cCcceeEeecCCCCCCEEEEEcCCCc
Q 019006 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG--KQIKKM-AE-HNSFVNSCCPSRRGPPLVVSGSDDGT 166 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~s~~~d~~ 166 (347)
.....+.+|...|.+++|+++ +|++|+.|++|++||+..+ +....+ .. |...|.++++++.+ .++++|+.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCc
Confidence 345678899999999999987 9999999999999999875 334444 33 88889999998875 68999999999
Q ss_pred eEEEeCCCC-------Cceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC----ceEEEecCCCCceeEEEE
Q 019006 167 AKLWDMRQR-------GAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG----EVSMTLQGHQDMITGMSL 234 (347)
Q Consensus 167 i~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~v~~ 234 (347)
|++||+... .....+ .|...|.+++|+|++++|++|+.|+.|++||++.. +....+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999998532 223334 35678999999999999999999999999999532 456778899999999999
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC--CCEEEEeeCCCeEEEEeCCCc----
Q 019006 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD--GSKVTAGSSDRMVYIWDTTSR---- 308 (347)
Q Consensus 235 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sgs~dg~i~vwd~~~~---- 308 (347)
+|++++|++++.|++|++||.+.. ...++..+.+|. ..+.+++|+|+ +.+|++|+.|+.|++||+..+
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCS----SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCC----CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 999999999999999999998632 224556666664 57899999999 779999999999999998765
Q ss_pred ----eeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 309 ----RILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 309 ----~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+..+.+ |...|.+++|++++ +|++++.||+|+|||+
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE 278 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence 34555665 99999999999665 8999999999999973
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=278.94 Aligned_cols=280 Identities=20% Similarity=0.268 Sum_probs=231.9
Q ss_pred EEEEEECCCCCe-EEEeeCCCcEEEEeccCCCe---eeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCC--
Q 019006 60 VYTMKFNPAGTV-IASGSHDRDIFLWHVHGDCK---NFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETG-- 132 (347)
Q Consensus 60 V~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~---~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~-- 132 (347)
...++++|+... +++++.||.|++|++..... ....+.+|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 345788887754 45689999999999854322 2345779999999999999 8999999999999999999887
Q ss_pred -----ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEEEEec
Q 019006 133 -----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 133 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+.+..+..|...+..+++++.+..++++++.|++|++||++++..+..+ .+...+.+++|+|++..|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 5567788899999999999987779999999999999999998887776 35678999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEe-cCCCCc-eeEEEECCCCCEEEEE---cCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 205 DNDVKVWDLRKGEVSMTL-QGHQDM-ITGMSLSPDGSYLLTN---GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~-~~~~~~-i~~v~~~~~~~~l~t~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
||.|++||+++++....+ ..|... +.++.|+|++++|+++ +.|+.|++||++..... ...... .....+
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~---~~~~~v 270 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP---LSLQEL---DTSSGV 270 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC---SEEEEC---CCCSSC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC---ceEEec---cCCCce
Confidence 999999999999988888 788765 8999999999999999 79999999999864321 112211 113468
Q ss_pred EEEEECCCCCEEE-EeeCCCeEEEEeCCCcee-eEEecC--CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 280 LKCGWSPDGSKVT-AGSSDRMVYIWDTTSRRI-LYKLPG--HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 280 ~~~~~s~~g~~l~-sgs~dg~i~vwd~~~~~~-~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEc
Confidence 8999999999996 566899999999998874 444444 5689999999999998865 5668999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=312.13 Aligned_cols=293 Identities=23% Similarity=0.384 Sum_probs=236.0
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC--CCCEEEEecCCCeEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT--DGSQIISASPDKTLRA 126 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 126 (347)
.+..+.+|.+.|.+++|+|++++||+|+.|+.|++||+.. ......+.+|...|.+++|+| ++..+++++.|+.|++
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence 3567889999999999999999999999999999999964 456677889999999999999 4568999999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-------------------------
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF------------------------- 181 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~------------------------- 181 (347)
||+.+++.+..+..|...+..+++++++ .++++++.||+|++||++++.....+
T Consensus 728 wd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 728 WDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 9999999999999999999999998865 58899999999999998755322111
Q ss_pred -------------------------------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCcee
Q 019006 182 -------------------------------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 182 -------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.+...+.+++|+|++..+++++.||.|++||+.++.....+.+|...|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 2345678899999999999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCC---------------------------------------------------
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYA--------------------------------------------------- 259 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~--------------------------------------------------- 259 (347)
+++|+|+++++++++.|+.|++||+....
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999999999964200
Q ss_pred ----Cc--------------------CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce------
Q 019006 260 ----PQ--------------------NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR------ 309 (347)
Q Consensus 260 ----~~--------------------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~------ 309 (347)
+. ......+.+ ....+.+++|+|+|++|++++.||.|++||+.+++
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1042 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG----HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA 1042 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC----CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBC
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc----CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEec
Confidence 00 000111111 23457778899999888888888888877766544
Q ss_pred ----------------------------------eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 310 ----------------------------------ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 310 ----------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+..+.+|.+.|.+++|+|+++++++++.|++|++||+
T Consensus 1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~ 1114 (1249)
T 3sfz_A 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114 (1249)
T ss_dssp CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECS
T ss_pred CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 33445566666777777777777777777777777763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=272.78 Aligned_cols=250 Identities=21% Similarity=0.322 Sum_probs=213.0
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeeccCcceeEeecCCC-CCCEEEEEcCCCceEEE
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE--TGKQIKKMAEHNSFVNSCCPSRR-GPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~d~~i~iw 170 (347)
..+.+|...|.+++|+|++++|++++.||.|++||+. +++.+..+..|...|.++++.++ ...++++++.|+.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4578999999999999999999999999999999997 55667778889999999988755 25689999999999999
Q ss_pred eCCCCC--ceeecC-CCCceEEEEEcCC--CCeEEEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECC-------
Q 019006 171 DMRQRG--AIQTFP-DKYQITAVSFSDA--SDKIYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSP------- 236 (347)
Q Consensus 171 d~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~------- 236 (347)
|+.++. .+..+. +...+.+++|+|+ +..+++++.|+.|++||++... ....+..|...|.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 998875 444443 5678999999999 8999999999999999998773 4456778999999999999
Q ss_pred ------CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC---CCEEEEeeCCCeEEEEeCCC
Q 019006 237 ------DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD---GSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 237 ------~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~l~sgs~dg~i~vwd~~~ 307 (347)
+++++++++.|+.|++||++...........+.+| ...+.+++|+|+ +.+|++++.||.|++||+.+
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc----cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998654433444555554 357899999999 89999999999999999988
Q ss_pred ce-----eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 308 RR-----ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 ~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+. .+.....|...|.+++|+|++++|++++.||.|++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 63 22233458899999999999999999999999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=296.90 Aligned_cols=200 Identities=11% Similarity=0.164 Sum_probs=170.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
...||.+.|++++|+|++++||+|+.||+|++|+..+. .. .....|...|.+++|+| +++|++++.|++|++||+.+
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~-~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EV-VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-EE-EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EE-EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 34589999999999999999999999999999998542 22 23345788999999999 88999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----------e-cCCCCceEEEEEcCC-CCe
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----------T-FPDKYQITAVSFSDA-SDK 198 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----------~-~~~~~~v~~~~~~~~-~~~ 198 (347)
++.+..+. +...+.++++++.+ .++++|+.||+|++||++++.... . ..+...|.+++|+|+ +..
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 98887775 56778888888765 588999999999999998766421 1 124568999999996 468
Q ss_pred EEEEecCCcEEEEeCCCCceEEEecCC------------------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQGH------------------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
+++|+.||.| +||+++++....+..| ...|++++|+|+|++|++++.|+.|++||++.
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 8999999999 9999999888877765 46799999999999999999999999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=289.17 Aligned_cols=261 Identities=12% Similarity=0.052 Sum_probs=198.0
Q ss_pred ccccEEEEEECCCC---------CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 56 HQSAVYTMKFNPAG---------TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 56 h~~~V~~v~~~~~~---------~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.+++++.|++|+|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~laS~s~D~tI~i 187 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFDKEKHSSCIQI 187 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------CEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------CccchhhhhhccCCCCceEEE
Confidence 57788999999876 788888765420 013688899999999999999
Q ss_pred EECCCCcee----eeeeccCcceeEeecCCC-----CCCEEEEEcCCCceEEEeCCCCCce-----------eec-CCCC
Q 019006 127 WDVETGKQI----KKMAEHNSFVNSCCPSRR-----GPPLVVSGSDDGTAKLWDMRQRGAI-----------QTF-PDKY 185 (347)
Q Consensus 127 wd~~~~~~~----~~~~~~~~~v~~~~~~~~-----~~~~~~s~~~d~~i~iwd~~~~~~~-----------~~~-~~~~ 185 (347)
||+.+++.. ..+..|...|..+++++. ...+|++++.||+|++||+..+... ..+ .+..
T Consensus 188 Wd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 188 FKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp EEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred EEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 999876542 235566778888998875 2468999999999999999765321 122 3456
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc-eEEEecCCCCceeEE--EECCCC-CEEEEEcCCCcEEEEeCCCCCCc
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGE-VSMTLQGHQDMITGM--SLSPDG-SYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v--~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
.+.+++|+++ ..|++|+.||+|++||++++. ....+.+|...|+++ +|+|++ ++|+|++.|++|+|||++..
T Consensus 268 ~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--- 343 (524)
T 2j04_B 268 LITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--- 343 (524)
T ss_dssp CEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---
T ss_pred CEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---
Confidence 8999999985 589999999999999998764 445688999999999 578887 89999999999999999742
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
.+...+.+|.. ...+.+++|+|+++.|++++.|+.|++||++++.++..+.+|.+.|++++|+|++++|++++.|++
T Consensus 344 -~~~~~~~~~~~--~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 344 -ATTKTTVSRFR--GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp -HHHCEEEEECS--CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred -Ccccccccccc--cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 33333444321 123678899999999999999999999999999888889999999999999999999999999999
Q ss_pred EEeecC
Q 019006 342 IYLGEI 347 (347)
Q Consensus 342 i~i~~~ 347 (347)
|++|++
T Consensus 421 v~lwd~ 426 (524)
T 2j04_B 421 LIITNA 426 (524)
T ss_dssp EECCBS
T ss_pred EEEEec
Confidence 999984
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=259.82 Aligned_cols=278 Identities=12% Similarity=0.176 Sum_probs=208.3
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAW 127 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iw 127 (347)
++..+.+|...|++++|+|+|++||+|+.|+ +++|+... ...... .+...+..+++.++++.+ ++++.|++|++|
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3445678999999999999999999998876 78999853 222222 222357888899888877 567888999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEE--Eec
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYT--GGI 204 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~ 204 (347)
|..+++.+..+. +...+..+.+.+. .++.+ .|+.|++||+.+. +.+..+.. ....+++++ ..++. |+.
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSC
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCc
Confidence 999998888775 5567777777653 34433 4789999999887 55555444 444556666 56665 689
Q ss_pred CCcEEEEeCCCCc----------------eEEEecCCCCceeEEEECCCCCEEEEEcCCCc-EEEEeCCCCCCcCceeEE
Q 019006 205 DNDVKVWDLRKGE----------------VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK-LCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 205 dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~ 267 (347)
||.|++||++++. ....+.+|...|++++|+|++++|++++.|++ |++||++. ..++..
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~----~~~~~~ 233 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED----GVLVRE 233 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT----CCEEEE
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC----CcEEEE
Confidence 9999999998765 26778999999999999999999999999998 99999984 345555
Q ss_pred Ee-c-cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee--EEec---------------------CCccCee
Q 019006 268 LE-G-HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL--YKLP---------------------GHTGSVN 322 (347)
Q Consensus 268 ~~-~-~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~--~~~~---------------------~h~~~v~ 322 (347)
+. + | ...+.+++|+|+|++|++|+.|+.|++||+..+... ..+. .+.....
T Consensus 234 ~~~g~h----~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 234 FRRGLD----RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EECTTC----CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEcCCC----CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 65 3 3 357999999999999999999999999998764311 1111 1122346
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.++|+++++.+++++.||.+++|++
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 7899999999999999999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=288.14 Aligned_cols=288 Identities=18% Similarity=0.253 Sum_probs=241.2
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+..+.+|.+.|.+++|+|++++|++|+.||.|++|++.. ......+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 4567789999999999999999999999999999999864 355667889999999999999999999999999999999
Q ss_pred CCCC-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--CCCceEEEEEcC--CCCeEEEEe
Q 019006 129 VETG-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--DKYQITAVSFSD--ASDKIYTGG 203 (347)
Q Consensus 129 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~ 203 (347)
+.++ .....+..|...+..+++++.+..++++++.|++|++||+..+.....+. +...+.+++|+| ++..+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 9887 55667778889999999988556789999999999999998776655543 236799999999 899999999
Q ss_pred cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
.||.|++||+++++....+.+|...|.+++|+|+++++++++.||.|++||+... .....+..+ ...+.+++
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~----~~~v~~~~ 277 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVG----LERSWCIA 277 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----SEEEEECCS----SSSEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEeecC----CCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999998743 344455443 35789999
Q ss_pred ECCCCC--EEEEeeCCCeEEEEeCCCcee----------e---------------------------------EEecCCc
Q 019006 284 WSPDGS--KVTAGSSDRMVYIWDTTSRRI----------L---------------------------------YKLPGHT 318 (347)
Q Consensus 284 ~s~~g~--~l~sgs~dg~i~vwd~~~~~~----------~---------------------------------~~~~~h~ 318 (347)
|+|+|. ++++|+ ++.+.+|++..... + ..+..|.
T Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 278 THPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp ECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence 999987 455555 55688887654221 1 1223455
Q ss_pred cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 319 GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 319 ~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+..++|+|+++++++++ |+.+++|++
T Consensus 357 ~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp SCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred cCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 6788999999999999888 899999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=262.62 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=212.2
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
+..|..+|.+++|+|++++|++++.|+.|++||+.+++ .+..+..|...+..+++++.+ .++++++.|+.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECC
Confidence 45688999999999999999999999999999999887 778888899999999998754 688999999999999998
Q ss_pred CCCceee---cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce----EEEecCCCCceeEEEECCCCCEEEEEcC
Q 019006 174 QRGAIQT---FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV----SMTLQGHQDMITGMSLSPDGSYLLTNGM 246 (347)
Q Consensus 174 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~~~~~~l~t~~~ 246 (347)
++..... ..+...+.+++|+|+++++++++.|+.|++||++.+.. ......|...|.+++|+|+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 7764333 34667899999999999999999999999999987762 2333678889999999999999999999
Q ss_pred CCcEEEEeCCCCC--------------CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 247 DCKLCIWDMRPYA--------------PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 247 d~~i~~wd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
|+.|++||++... +...++..+..| ...+.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS----CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC----SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCC----CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 9999999975211 123444445443 3578999999999999999999999999999999999
Q ss_pred EecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 313 KLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 313 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.+|...|..++|+|++.+++++ .|+.|++|++
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999999999999999988877 9999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=265.64 Aligned_cols=245 Identities=22% Similarity=0.301 Sum_probs=209.2
Q ss_pred ccccEEEEEECCC----CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECC
Q 019006 56 HQSAVYTMKFNPA----GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 56 h~~~V~~v~~~~~----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 130 (347)
|...|++++|+|+ +.+|++|+.||.|++|++.. .+....+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 6688999999998 67999999999999999864 355667889999999999999 89999999999999999999
Q ss_pred CCceeeee---eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-------------------------
Q 019006 131 TGKQIKKM---AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP------------------------- 182 (347)
Q Consensus 131 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~------------------------- 182 (347)
+++.+..+ ..|...+..+++++.+ .++++++.|+.|++||++++.....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred cCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 99888777 6788899999998865 588999999999999998765443222
Q ss_pred ----CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce--------------EEEecCCCCceeEEEECCC--CCEEE
Q 019006 183 ----DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV--------------SMTLQGHQDMITGMSLSPD--GSYLL 242 (347)
Q Consensus 183 ----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~v~~~~~--~~~l~ 242 (347)
+...|.+++|+ ++++++++.|+.|++||++++.. ...+..|...|++++|+|+ +++|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 56679999998 67999999999999999987643 6678889999999999999 99999
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+++.||.|++||+............+..|.+ ...+.+++|+|++++|++|+.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC--GAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTC--CSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEccccc--CCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999865544434445655532 3679999999999999999999999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=263.29 Aligned_cols=249 Identities=14% Similarity=0.187 Sum_probs=208.4
Q ss_pred eeeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEEEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 91 KNFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRAWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
.....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.++++++.+..++++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3455678999999999999998 899999999999999999887766654 5888999999988666789999999999
Q ss_pred EEEeCCCCCceeecCC---CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-EEEE
Q 019006 168 KLWDMRQRGAIQTFPD---KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLT 243 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t 243 (347)
++||++.........+ ...+.+++|+|++..+++++.|+.|++||+ .++....+.+|...|.+++|+|+++ ++++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 9999986433222222 356999999999999999999999999999 5778888999999999999999999 9999
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCEEEEeeCCCeEEEEeCCCceeeEEecCCc----
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT---- 318 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~---- 318 (347)
++.|+.|++||++.......+...+ .| ...+.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~----~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PH----EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-EC----SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cC----CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 9999999999998755444555544 23 45799999999 99999999999999999999988777776554
Q ss_pred -------------cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 319 -------------GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 319 -------------~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+..++|+|++++ +++.|+.|++||+
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA 337 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence 23344667777766 8889999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=264.54 Aligned_cols=252 Identities=18% Similarity=0.313 Sum_probs=206.9
Q ss_pred cCccccEEEEEECCC---CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEE------cCCCCEEEEecCCCeE
Q 019006 54 TGHQSAVYTMKFNPA---GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHW------TTDGSQIISASPDKTL 124 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~---~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~l~s~~~dg~i 124 (347)
.+|...|.+++|+|+ +.+|++|+.||.|++|++.........+.+|...|.++.| +|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 479999999999998 6999999999999999997544356778899999999955 6789999999999999
Q ss_pred EEEECCCCc-eeeeeeccCc----ceeEee----cCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcC-
Q 019006 125 RAWDVETGK-QIKKMAEHNS----FVNSCC----PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSD- 194 (347)
Q Consensus 125 ~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~- 194 (347)
++||+.+++ .+..+..+.. .+..+. +++ +..++++++.|+.|++||++++.......+...+.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCC
Confidence 999999876 5666654443 566655 334 45689999999999999999888777777788999999999
Q ss_pred --CCCeEEEEecCCcEEEEeCCCCceEEEe-----cCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcC----
Q 019006 195 --ASDKIYTGGIDNDVKVWDLRKGEVSMTL-----QGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQN---- 262 (347)
Q Consensus 195 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~---- 262 (347)
++..+++++.||.|++||+++++....+ .+|...|++++|+|+++ ++++++.||.|++||++......
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 8999999999999999999876544443 38999999999999998 89999999999999997533221
Q ss_pred -----------ceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCCcee
Q 019006 263 -----------RCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 263 -----------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~~~~ 310 (347)
..+..+..| ...+.+++|+|++++|+ +|+.||.|++||+.+.++
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLS----TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECC----SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCccccccccceeeccccC----CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 234445554 35789999999999998 899999999999987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=272.37 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=199.7
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 173 (347)
+..+..+|.+++|+|++++|++++.|+.|++||+.++ +.+..+..|...+..+++++++ .++++++.|++|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcC
Confidence 4456779999999999999999999999999999988 6777888899999999998875 578899999999999998
Q ss_pred CCC---ceee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecC-CCCceeEEEECCCCCEEEEEc
Q 019006 174 QRG---AIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQG-HQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 174 ~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~v~~~~~~~~l~t~~ 245 (347)
++. .... ..+...+.+++|+|+++.|++++.|+.|++||++.++ ....+.. |...|.+++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 776 3333 3566789999999999999999999999999998876 3667777 999999999999999999999
Q ss_pred CCCcEEEEeCCCCCC--------------cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-
Q 019006 246 MDCKLCIWDMRPYAP--------------QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI- 310 (347)
Q Consensus 246 ~d~~i~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~- 310 (347)
.|+.|++||++.... ...+...+ . ....+.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P----SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C----CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c----CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 999999999853221 12222222 2 346799999999999999999999999999999887
Q ss_pred ---eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 311 ---LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 311 ---~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+..+.+|...|.+++|+|++++|++++.|+.+ +|+
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 78899999999999999999999999877776 553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=265.80 Aligned_cols=247 Identities=20% Similarity=0.369 Sum_probs=211.1
Q ss_pred EEEeCcccceeEEEEcCC-CCEEEEecCCCeEEEEECCC----------CceeeeeeccCcceeEeecCCCCCCEEEEEc
Q 019006 94 MVLKGHKNAILDLHWTTD-GSQIISASPDKTLRAWDVET----------GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGS 162 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 162 (347)
.....|.+.|.+++|+|+ +.+|++++.||.|++|++.+ .+.+..+..|...+..+++++.+..++++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 67899999999999999976 5667778889999999999888776999999
Q ss_pred CCCceEEEeCCCCCc-------eeec-CCCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCC---ceEEEecCCCCcee
Q 019006 163 DDGTAKLWDMRQRGA-------IQTF-PDKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKG---EVSMTLQGHQDMIT 230 (347)
Q Consensus 163 ~d~~i~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 230 (347)
.||+|++||+..... ...+ .+...|.+++|+| ++..|++++.||.|++||++++ +....+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 1222 4567899999999 5778889999999999999977 56677788999999
Q ss_pred EEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCC-
Q 019006 231 GMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTS- 307 (347)
Q Consensus 231 ~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~- 307 (347)
+++|+|+++ .+++++.||.|++||++... ..+..+..| ...+.+++|+|+++ +|++++.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h----~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESH----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECC----SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecC----CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999987 68899999999999998532 334555555 35799999999995 799999999999999987
Q ss_pred -------------ceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 308 -------------RRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 -------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
.+++..+.+|...|.+++|+|+++ +|++++.|+.|+||++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 367788899999999999999999 9999999999999984
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=274.49 Aligned_cols=265 Identities=14% Similarity=0.244 Sum_probs=213.6
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE-eCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCC---Cce---e
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVET---GKQ---I 135 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~---~~~---~ 135 (347)
.|+|++..+++++ .|+..+ +....+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+ +.. .
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g--~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG--KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC--CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCccccccccc------cccccc--eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 3678888887765 377543 455566 88999999999999 999999999999999999876 331 2
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC---CCCceeecC-------------CCCceEEEE--EcCCCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QRGAIQTFP-------------DKYQITAVS--FSDASD 197 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~ 197 (347)
..+ .|...|.++++.+. ..++++|+.|++|++||+. .+....... ....+.++. +++++.
T Consensus 106 ~~~-~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 106 LTY-DCSSTVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EEE-ECSSCEEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eec-cCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 222 47888999999875 4689999999999999984 343332211 344566666 567899
Q ss_pred eEEEEecCCcEEEEeCCCCceEEEecC--CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe-ccccc
Q 019006 198 KIYTGGIDNDVKVWDLRKGEVSMTLQG--HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE-GHQHN 274 (347)
Q Consensus 198 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~ 274 (347)
.+++++.|+.|++||+++++....+.+ |...|++++|+|++++|++++.||.|++||++. ..++..+. .+
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~--- 256 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF----NVLIRSWSFGD--- 256 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----TEEEEEEBCTT---
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----ccEEEEEecCC---
Confidence 999999999999999999999999988 889999999999999999999999999999984 34445443 32
Q ss_pred cccceEEEEE----CCCCCEEEEeeCCCeEEEEeCCCceeeEEecC--------------------------CccCeeeE
Q 019006 275 FEKNLLKCGW----SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG--------------------------HTGSVNES 324 (347)
Q Consensus 275 ~~~~~~~~~~----s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~--------------------------h~~~v~~~ 324 (347)
...+.+++| +|++.+|++|+.||.|++||+.+++.+..+.+ |...|.++
T Consensus 257 -~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 257 -HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp -CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred -CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 246788855 45788999999999999999999988777664 55568888
Q ss_pred EEcCCCCEEEEecCCCcEEeecC
Q 019006 325 VFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+ ++++|++++.|+.|++||+
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEET
T ss_pred EEC-CceEEEecCCCCeEEEEEC
Confidence 898 7789999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=265.04 Aligned_cols=254 Identities=18% Similarity=0.302 Sum_probs=215.7
Q ss_pred CeeEecCccccEEEEEECCC----C---CeEEEeeCCCcEEEEeccCCCe----eeEEEeCc-----ccceeEEEEc---
Q 019006 49 PIMLLTGHQSAVYTMKFNPA----G---TVIASGSHDRDIFLWHVHGDCK----NFMVLKGH-----KNAILDLHWT--- 109 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~----~---~~l~s~~~d~~v~~w~~~~~~~----~~~~~~~h-----~~~v~~~~~~--- 109 (347)
....+.+|...|++++|+|+ + .+|++++.|+.|++|++..... ....+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 45678899999999999999 9 9999999999999999864321 15667888 5899999999
Q ss_pred -CCCCE-EEEecCCCeEEEEECCC------Cceee-----ee-------eccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 110 -TDGSQ-IISASPDKTLRAWDVET------GKQIK-----KM-------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 110 -~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
|++++ |++++.||.|++||+.+ ++.+. .+ ..|...+..+.+++.+ ++++++.|+.|++
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i 211 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI 211 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEE
Confidence 99999 99999999999999988 66555 55 3367788888888876 8999999999999
Q ss_pred EeCCCCCceeecCC-------CCceEEEEEcCCCCeEEEEecC---CcEEEEeCCCCceEEEecC-------------CC
Q 019006 170 WDMRQRGAIQTFPD-------KYQITAVSFSDASDKIYTGGID---NDVKVWDLRKGEVSMTLQG-------------HQ 226 (347)
Q Consensus 170 wd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~ 226 (347)
||++++..+..+.. ...+.+++|+|++.+|++++.| +.|++||+++++....+.. |.
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 99998888777764 7789999999999999999999 9999999999999999988 99
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe------ccc-----------cccccceEEEEECCCC-
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE------GHQ-----------HNFEKNLLKCGWSPDG- 288 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~-----------~~~~~~~~~~~~s~~g- 288 (347)
..|.+++|+|++++|++++.|+.|++||++. ..++..+. .|. ......+.+++|+|+|
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKT----KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCC----CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9999999999999999999999999999974 34455555 330 0014679999999999
Q ss_pred ---------CEEEEeeCCCeEEEEeCCCc
Q 019006 289 ---------SKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 289 ---------~~l~sgs~dg~i~vwd~~~~ 308 (347)
++|++|+.||.|++||+.++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998775
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=272.13 Aligned_cols=248 Identities=15% Similarity=0.245 Sum_probs=201.3
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-----------eeeeeeccC------------cceeEeecCCCC
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK-----------QIKKMAEHN------------SFVNSCCPSRRG 154 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 154 (347)
.|.+.|.+++|+|++++|++|+.||.|++||+.+++ ....+..|. ..|..+++.+.+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998776 466777887 779999998875
Q ss_pred C-CEEEEEcCCCceEEEeCCCCCce---------------------------------------ee--cCCCCceEEEEE
Q 019006 155 P-PLVVSGSDDGTAKLWDMRQRGAI---------------------------------------QT--FPDKYQITAVSF 192 (347)
Q Consensus 155 ~-~~~~s~~~d~~i~iwd~~~~~~~---------------------------------------~~--~~~~~~v~~~~~ 192 (347)
. .++++++.|++|++||+..+... .. ..+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 4 58899999999999998653321 01 235678999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCc-eEE-------EecCCCCceeEEEECCCC-CEEEEEcCCCcEEEEeCCCCCCcCc
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRKGE-VSM-------TLQGHQDMITGMSLSPDG-SYLLTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~-~~~-------~~~~~~~~i~~v~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
+|++..+++| .|+.|++||++... ... .+.+|...|.+++|+|++ ++|++++.|+.|++||++.......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 79999999998443 333 256889999999999998 9999999999999999986543222
Q ss_pred eeEEEeccccc--------cccceEEEEECCCCCEEEEeeCCCeEEEEeCCC-ceeeEEecCCccCe-------------
Q 019006 264 CVKILEGHQHN--------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSV------------- 321 (347)
Q Consensus 264 ~~~~~~~~~~~--------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v------------- 321 (347)
....+..+... ....+.+++|+|+|++|++++. +.|++||+.. ++++..+.+|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 24555554310 1127999999999999999999 9999999997 88888899986432
Q ss_pred --eeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 322 --NESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 322 --~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..++|+|++++|++++.||.|++||+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 24999999999999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=278.77 Aligned_cols=250 Identities=26% Similarity=0.422 Sum_probs=205.6
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
...+.+|...|.+++|+|++++|++|+.|++|++||+.. ......+.+|...|.+++|+|++++|++++.|++|++||.
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence 356889999999999999999999999999999999964 4556778999999999999999999999999999999998
Q ss_pred CCCceeee---eeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 130 ETGKQIKK---MAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 130 ~~~~~~~~---~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
........ ...|...+.++.+++.. ..++++|+.|++|++||+++......+. |...|.+++|+|++.++++|+.
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 65433222 13577778888888765 3589999999999999999888777665 5678999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc-----------
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH----------- 273 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------- 273 (347)
||.|++||+++++....+.. ...|.+++|+|++.++++++ ++.|++||++.. ..+..+..+..
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK----SIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp TSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT----EEEEEECCCCC-----------
T ss_pred CCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC----CChhhhcccccccccccccccc
Confidence 99999999999988877765 45799999999988877765 567999999743 23333322110
Q ss_pred ----ccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 274 ----NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 274 ----~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.....+.+++|+|+|++|++|+.||.|++||+.
T Consensus 656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 001236789999999999999999999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=252.15 Aligned_cols=249 Identities=18% Similarity=0.304 Sum_probs=218.8
Q ss_pred CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 90 CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 90 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
......+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...+..+++++++ .++++++.|+.|++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKL 100 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999998764 68899999999999
Q ss_pred EeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCc-----------eEEEecCCCC--ceeE
Q 019006 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-----NDVKVWDLRKGE-----------VSMTLQGHQD--MITG 231 (347)
Q Consensus 170 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~i~~ 231 (347)
||+.+++.+..+.+...+.++.|+|++..+++++.+ +.|++||++... ....+..|.. .+.+
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999988888888899999999999999999998 999999987543 2334445555 8999
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
++|+|++++|++++.||.|++||++.. ......+..| ...+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLH----EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECC----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecC----CCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 999999999999999999999999742 3445555554 357899999999999999999999999999999988
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCC--------------cEEeecC
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDK--------------QIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~--------------~i~i~~~ 347 (347)
..+. +...+..++|+|+++++++++.++ .+++||+
T Consensus 254 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 254 KKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp EEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred eeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 8887 778999999999999999999998 7888874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=261.38 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=222.1
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe--eeEEEe--------------------------------------
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK--NFMVLK-------------------------------------- 97 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--~~~~~~-------------------------------------- 97 (347)
.++.+++|+|+|++|+++ .++.|++|++..... .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999976655 578999999854320 122222
Q ss_pred ----------------CcccceeEEEEcCCCCEE-EEecCCCeEEEEECC--CCceeeeee--ccCcceeEeecCCCCCC
Q 019006 98 ----------------GHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVE--TGKQIKKMA--EHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 98 ----------------~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~ 156 (347)
+|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .+...+..+++++++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-T 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-S
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-C
Confidence 344479999999999996 899999999999998 787777765 456778888888865 5
Q ss_pred EEEEEcCCCceEEEeCCCCCcee----ec-CCCCceEEEEEcCC---CCeEEEEecCCcEEEEeCCCCceEEE-ecCCCC
Q 019006 157 LVVSGSDDGTAKLWDMRQRGAIQ----TF-PDKYQITAVSFSDA---SDKIYTGGIDNDVKVWDLRKGEVSMT-LQGHQD 227 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~~~----~~-~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~ 227 (347)
++++|+.++.+++|++....... .+ .+...|.+++|+|+ +.+|++++.|+.|++||+++++.... +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 78899999999999998766442 33 35578999999999 88999999999999999999887776 568999
Q ss_pred ceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc---------------------cccccceEEEEECC
Q 019006 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ---------------------HNFEKNLLKCGWSP 286 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~ 286 (347)
.|.+++|+ ++++|++++.|+.|++||++.. .++..+..+. ......+..++|+|
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG----KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC----CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC----cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 99999999 9999999999999999999853 3344443221 01234688999999
Q ss_pred CCCEEEEee-CCCeEEEEeC--CCc---eeeEEecCCccCeeeEEEcCCCCEEEEecC------CCcEEeec
Q 019006 287 DGSKVTAGS-SDRMVYIWDT--TSR---RILYKLPGHTGSVNESVFHATEPVIGSCSS------DKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs-~dg~i~vwd~--~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------D~~i~i~~ 346 (347)
++++|++++ .|+.|++|++ ..+ +.+..+.+| +.|.+++|+|++.+++..+. +..|.+|.
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 999999999 8999999999 555 677788888 88999999996544444443 44567765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=284.90 Aligned_cols=254 Identities=27% Similarity=0.461 Sum_probs=210.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCC--CCEEEEecCCCeEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTD--GSQIISASPDKTLRAW 127 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iw 127 (347)
.++.||.+.|++++|+|++++|++|+.||.|++|++.+. ......+.+|...|.+++|+++ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 467899999999999999999999999999999998632 3445678899999999999988 9999999999999999
Q ss_pred ECCCCc--eeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCc---eeecCCCCceEEEEEcC-------
Q 019006 128 DVETGK--QIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGA---IQTFPDKYQITAVSFSD------- 194 (347)
Q Consensus 128 d~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~------- 194 (347)
|+.+++ ....+..|...+.++.+++.. +.++++|+.||+|++||++.+.. .....+...+.++.|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 666777889999999998873 56899999999999999987633 22335667899999999
Q ss_pred ------CCCeEEEEecCCcEEEEeCCCC----ceEEEecCCCCceeEEEECCC---CCEEEEEcCCCcEEEEeCCCCCCc
Q 019006 195 ------ASDKIYTGGIDNDVKVWDLRKG----EVSMTLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDMRPYAPQ 261 (347)
Q Consensus 195 ------~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~v~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~ 261 (347)
++..+++|+.||.|++||++++ .....+.+|...|++++|+|+ ++++++++.||.|++||++.....
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 4889999999999999999876 455678899999999999999 899999999999999999864221
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.. .... ........+.+++|+|+|++|++|+.||.|++||+..
T Consensus 243 ~~--~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 243 WK--KTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CB--CCBS-SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ce--eEEe-ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 11 1111 1112345788999999999999999999999999874
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=266.03 Aligned_cols=263 Identities=10% Similarity=0.102 Sum_probs=208.4
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
-...|.+++|+|||+++||++.|++|+ +.. .. ..+++|...|.+++|+|+| .++.+.+|+.+.. ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~-~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~ 79 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPK-YA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GL 79 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EEC-CC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccc-cc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eE
Confidence 457899999999999999999999999 532 22 2347999999999999998 5666666654322 22
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----ceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----QITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
..+ .+...|..++++|++ .++++++.||.+++||... .+..+.+.. .+.+++|+|++++|++|+.||+|++
T Consensus 80 ~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 232 347889999999976 4688999999999999543 444444322 4999999999999999999999999
Q ss_pred EeCCCCce-------EEEe----cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe-ccccccccc
Q 019006 211 WDLRKGEV-------SMTL----QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE-GHQHNFEKN 278 (347)
Q Consensus 211 wd~~~~~~-------~~~~----~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (347)
||+..+.. ..++ .+|.+.|.+++|+|+| +++++.|+.+++||+..... ......+. +| ...
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h----~~~ 228 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-QPVSRMIQNAS----RRK 228 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-CCCEEEEECCC----SSC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-ccceeeecccc----cCc
Confidence 99988752 4555 6788899999999999 88889999999999875331 11223343 33 256
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE--cCCCCEEEEecCCCcEEeecC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF--HATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|.+++|+ |+.||+++ ++.|++||..+++......+|...|.+++| +|++..++++++||+ ++|.+
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 8899999 68999997 699999999988874433389999999999 999999999999999 88853
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=261.59 Aligned_cols=254 Identities=24% Similarity=0.464 Sum_probs=212.9
Q ss_pred eEecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCC---------CeeeEEEeCcccceeEEEEcCCCC-EEEEec
Q 019006 51 MLLTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGD---------CKNFMVLKGHKNAILDLHWTTDGS-QIISAS 119 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 119 (347)
....+|.+.|++++|+|+ +.+||+++.||.|++|++... ......+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345689999999999997 689999999999999999641 455677889999999999999988 999999
Q ss_pred CCCeEEEEECCCCce-------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC---Cceeec-CCCCceE
Q 019006 120 PDKTLRAWDVETGKQ-------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR---GAIQTF-PDKYQIT 188 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~-~~~~~v~ 188 (347)
.||.|++|++.++.. ...+..|...+.++++++.+..++++++.|+.|++||++.. ..+..+ .+...++
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987422 34556788889999999877789999999999999999976 344444 5667899
Q ss_pred EEEEcCCCC-eEEEEecCCcEEEEeCCC-CceEEEecCCCCceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCc----
Q 019006 189 AVSFSDASD-KIYTGGIDNDVKVWDLRK-GEVSMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQ---- 261 (347)
Q Consensus 189 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~---- 261 (347)
+++|+|++. .+++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++.|+.|++||+......
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999987 588999999999999997 556778888999999999999985 6899999999999999753211
Q ss_pred ------CceeEEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCCc
Q 019006 262 ------NRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 262 ------~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~~ 308 (347)
...+....+| ...+..++|+|+++ +|++++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGH----TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCC----SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCC----CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 1333344443 35689999999999 8999999999999998754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=246.31 Aligned_cols=247 Identities=21% Similarity=0.326 Sum_probs=209.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
...+.+|...|.+++|+|++++|++|+.|+.|++|++... ......+.+|...|.++.| +++++++++.||.|++|
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW 129 (313)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE
Confidence 4567789999999999999999999999999999998643 2345567899999999999 57799999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCCCCeEEEEecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
| .++....+..|...+..+.+.+....++++++.|+.|++||.. .....+ .+...+.+++|+|++. +++++.|
T Consensus 130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 9 5677778888888998888877666789999999999999943 333333 3667899999999887 9999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
|.|++||+++++....+.+|...|++++|+|++ .+++++.|+.|++||++.. .....+..+ ...+.+++|+
T Consensus 205 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~----~~~~~~~~~----~~~i~~~~~~ 275 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG----SLKQVITLP----AISIWSVDCM 275 (313)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC----CEEEEEECS----SSCEEEEEEC
T ss_pred CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC----ceeEEEecc----CceEEEEEEc
Confidence 999999999999999999999999999999998 6999999999999998753 445555554 3478999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
|+++ +++++.||.|++||+.+++.+..
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred cCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 9998 56799999999999998876644
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=282.57 Aligned_cols=250 Identities=21% Similarity=0.325 Sum_probs=211.2
Q ss_pred EEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEE
Q 019006 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE--TGKQIKKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLW 170 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iw 170 (347)
..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+..|...|.+++++++. ..++++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 3568999999999999999999999999999999997 456677788899999999987652 5689999999999999
Q ss_pred eCCCCC--ceeec-CCCCceEEEEEcCC--CCeEEEEecCCcEEEEeCCCC--ceEEEecCCCCceeEEEECC-------
Q 019006 171 DMRQRG--AIQTF-PDKYQITAVSFSDA--SDKIYTGGIDNDVKVWDLRKG--EVSMTLQGHQDMITGMSLSP------- 236 (347)
Q Consensus 171 d~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~------- 236 (347)
|+.++. .+..+ .+...|.+++|+|+ +..+++|+.||.|++||++.+ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 998875 33443 46678999999999 999999999999999999876 34456678999999999999
Q ss_pred ------CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC---CCEEEEeeCCCeEEEEeCCC
Q 019006 237 ------DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD---GSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 237 ------~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~l~sgs~dg~i~vwd~~~ 307 (347)
+++++++++.||.|++||++.......+...+.+| ...+.+++|+|+ +.+|++|+.||.|++||+.+
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC----SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC----CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 58999999999999999998654433455555555 357999999999 99999999999999999988
Q ss_pred ce-----eeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 308 RR-----ILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 308 ~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+. .+....+|...|.+++|+|+++++++++.||.|++|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 64 34455678999999999999999999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=254.48 Aligned_cols=267 Identities=10% Similarity=0.075 Sum_probs=204.3
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC---------CCce
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE---------TGKQ 134 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~ 134 (347)
.+.+++.+|++|+.||+|++||+... +....+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 34467889999999999999999643 3333333 457788889887 9999999999999765 3343
Q ss_pred eeeee-ccCcceeEeecCC--CCCCEEEEEcCCCceEEEeCCCCCceeec--CCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 135 IKKMA-EHNSFVNSCCPSR--RGPPLVVSGSDDGTAKLWDMRQRGAIQTF--PDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 135 ~~~~~-~~~~~v~~~~~~~--~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+..+. .|...+..+.+++ . ..++++++.|++|++||++++...... .+...+.+++|+|++.++++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 33333 4556788888887 4 468899999999999999988876554 2344699999999999999999999999
Q ss_pred EEeCCCCceE-EEecC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 210 VWDLRKGEVS-MTLQG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 210 iwd~~~~~~~-~~~~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
+||+++++.. ..+.. |...|++++|+|++.+|++++ |+.|++||++....... +..+..+...... .+++|+|+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA-YPTYTIPEFKTGT--VTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS-SCCCBC-----CC--EEEEECTT
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee-ecccccccccccc--eEEEECCC
Confidence 9999999877 77887 999999999999999999999 55999999986432211 1111111111111 46899999
Q ss_pred CCEEEEeeC-CCeEEEEeCCCceeeEEecCCccCeeeEEEcC---CCCEEEEecCCCcEEee
Q 019006 288 GSKVTAGSS-DRMVYIWDTTSRRILYKLPGHTGSVNESVFHA---TEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 288 g~~l~sgs~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~i~ 345 (347)
|++|++++. |+.|++|++......... ..+..+.|++ +...+++++.|+.+.++
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999999998 999999998766544433 4677788888 88889999999888764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=252.54 Aligned_cols=261 Identities=19% Similarity=0.345 Sum_probs=206.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+.+|...|++|+|+|+|++||+|+.||+|++|++.. .+....+.+|...+.++.|+ +..|++|+.|+.+++||....
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 457888999999999999999999999999999964 46677889999999998885 679999999999999998764
Q ss_pred -ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce----e-ecCCCCceEEEEEcCCCCeE-EE--Ee
Q 019006 133 -KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI----Q-TFPDKYQITAVSFSDASDKI-YT--GG 203 (347)
Q Consensus 133 -~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----~-~~~~~~~v~~~~~~~~~~~l-~~--~~ 203 (347)
..+..+..|...+..+.+.+.+ .++++++.|+.+++||...+... . ...+...|.+++|+|.+..+ ++ |+
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred ceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 4456777888888888887765 58899999999999999865432 2 23456789999999976644 43 45
Q ss_pred cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 204 IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
.|+.|++||+++++....+..| ..+.++.|+|+++.+++++ .|+.|++||+.. ..++..+.+|. ..|.+
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----~~~v~~l~gH~----~~V~~ 369 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----MAKVAELKGHT----SRVLS 369 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT----CCEEEEECCCS----SCEEE
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC----CcEEEEEcCCC----CCEEE
Confidence 8999999999999988888766 4688999999999988765 789999999874 45667777774 57999
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
++|+|||++|++|+.||+|++||+.......+...+...+....|
T Consensus 370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 370 LTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999999999999887766666666655544444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=244.03 Aligned_cols=254 Identities=26% Similarity=0.426 Sum_probs=207.1
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
+...+.+|...|.+++|+|++++|++|+.|+.|++|+... .........+...+..+.+++++.+|++++.|+.+++||
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc-cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 4567899999999999999999999999999999999864 344556677888899999999999999999999999999
Q ss_pred CCCCcee-eeeeccCcceeEeecCCCC-CCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecC
Q 019006 129 VETGKQI-KKMAEHNSFVNSCCPSRRG-PPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
+...... .....|...+..+.+.+.. ..++++++.|+.|++||++++..+..+. +...|.+++|+|++++|++|+.|
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp TTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 8765443 3345567777777766543 3578899999999999999888777764 56789999999999999999999
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc-----ccccccceE
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH-----QHNFEKNLL 280 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 280 (347)
+.|++||+++.+....+..+ ..|.+++|+|++. +++++.|+.|++||++.. ..+..+... .......|.
T Consensus 237 g~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 237 GQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGK----IIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTT----EEEEEECCC-------CCCCCEE
T ss_pred CeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCC----eEEEeccccceeeeccCCCCCEE
Confidence 99999999999888888765 5799999999765 556677999999998742 222222211 112245789
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 311 ~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 311 SLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999998875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=255.00 Aligned_cols=282 Identities=10% Similarity=0.067 Sum_probs=234.3
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE-----EEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM-----VLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
+..+ ..+.+++|+|++.++++++.|+.|++|++... +... .+.+|...|.+++|++++.++++++.|+.|++|
T Consensus 119 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 119 FKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp EECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred EcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 3334 34668999998888899999999999998643 2222 234788899999999999999999999999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe----
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG---- 203 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---- 203 (347)
|+.+++.+..+..+...+..+++++.+..++++++.|+.|++||++++..+..+.....+.+++|+|+++.+++++
T Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESC
T ss_pred ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCC
Confidence 9999988888888888888899988877666788899999999999888888888777899999999999999887
Q ss_pred ----cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEE-EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 204 ----IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 204 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
.|+.|++||+++++....+ .|...+.+++|+|+++++ ++++.|+.|++||+.. ......+.. ...
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~----~~~~~~~~~-----~~~ 346 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE----KKVQKSIPV-----FDK 346 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT----TEEEEEEEC-----SSS
T ss_pred ccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC----CcEEEEecC-----CCC
Confidence 4889999999988766655 345578999999999755 5668999999999874 233343432 245
Q ss_pred eEEEEECCCCCEEEEeeC---------------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC-CCcE
Q 019006 279 LLKCGWSPDGSKVTAGSS---------------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS-DKQI 342 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~---------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~i 342 (347)
+..++|+|+|++|++++. ||.|++||..+++.+..+.. ...+..++|+|+++.|++++. |+.|
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 789999999999988876 57999999999999888876 457899999999999987775 9999
Q ss_pred EeecC
Q 019006 343 YLGEI 347 (347)
Q Consensus 343 ~i~~~ 347 (347)
++|++
T Consensus 426 ~v~~~ 430 (433)
T 3bws_A 426 RVYRR 430 (433)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=251.91 Aligned_cols=249 Identities=20% Similarity=0.339 Sum_probs=205.0
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC-CCc
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE-TGK 133 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~ 133 (347)
.|...|.+++|+|++++|++|+.||.|++|++.. ......+.+|...|.+++|+ +++|++++.||.|++||+. ...
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC-CeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence 3889999999999999999999999999999964 35566788999999999994 5799999999999999998 456
Q ss_pred eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeE-EEEe--cCCcEE
Q 019006 134 QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKI-YTGG--IDNDVK 209 (347)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~--~dg~i~ 209 (347)
....+..|...+..+.++++ ..++++|+.|+.|++||++++.....+. +...+.+++|+|++..+ ++++ .|+.|+
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp EEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred eeeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 67778889999999999885 4689999999999999999888776664 56789999999987654 5544 799999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEE--EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT--NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
+||+++++....+. +...|.+++|+|+++++++ |+.||.|++||+.... ......+.+| ...+.+++|+|+
T Consensus 288 i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~--~~~~~~~~~h----~~~v~~~~~s~d 360 (401)
T 4aez_A 288 FWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG--LTKQVDIPAH----DTRVLYSALSPD 360 (401)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE--EEEEEEEECC----SSCCCEEEECTT
T ss_pred EEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc--ceeEEEecCC----CCCEEEEEECCC
Confidence 99999998888876 5567999999999999999 4489999999987421 1222234444 356889999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
|++|++|+.||.|++|++.+++.+.+.
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC-------
T ss_pred CCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999999998877654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=260.82 Aligned_cols=248 Identities=16% Similarity=0.189 Sum_probs=198.4
Q ss_pred EEEeCcccceeEEEEcC-CCCEEEEecCCCeEEEEECCCCce--eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 94 MVLKGHKNAILDLHWTT-DGSQIISASPDKTLRAWDVETGKQ--IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
....+|...|++|+|+| ++++||+|+.||.|+|||+.+++. ...+..|...|.++++++.+..+|++|+.|++|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567889999999999 567899999999999999987654 344567899999999998777899999999999999
Q ss_pred eCCCCCceeecC---CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCC-EEEEEcC
Q 019006 171 DMRQRGAIQTFP---DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS-YLLTNGM 246 (347)
Q Consensus 171 d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~t~~~ 246 (347)
|++++....... ....+.+++|+|++.++++|+.||.|++||++ ++....+.+|...|++++|+|+++ ++++++.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 998654333222 23357889999999999999999999999986 456677889999999999999876 6789999
Q ss_pred CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc------C
Q 019006 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG------S 320 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~------~ 320 (347)
|+.|++||++........ ....+| ...|.+++|+|+|.+|++|+.||.|++||+.+++....+.+|.. .
T Consensus 272 d~~v~iwd~~~~~~~~~~-~~~~~h----~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASF-LYSLPH----RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp TSBCCEEETTTCCSSSCC-SBCCBC----SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred cceeeEEecccccccceE-EEeeec----cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 999999999865432221 111222 45789999999999999999999999999999988877776653 2
Q ss_pred eeeEEEcCCCCEEEEec------------CCCcEEeecC
Q 019006 321 VNESVFHATEPVIGSCS------------SDKQIYLGEI 347 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~s------------~D~~i~i~~~ 347 (347)
+....|+|++..+++++ .++.|++||+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 44567788777666654 3357889874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=250.35 Aligned_cols=241 Identities=14% Similarity=0.105 Sum_probs=204.7
Q ss_pred EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeeccCcceeEeecCCCCCC-EEEEEcCCCceEEEe
Q 019006 96 LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNSCCPSRRGPP-LVVSGSDDGTAKLWD 171 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~~~s~~~d~~i~iwd 171 (347)
..+|.+.|.+++|+|++++|++++.||.|++|++.+++ ....+..|...+..+++.+.+ . ++++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEE
Confidence 45899999999999999999999999999999998776 345556788889999888764 6 789999999999999
Q ss_pred C-CCCCceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC---------CceEEEecCCCCceeEEEECCCCC
Q 019006 172 M-RQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK---------GEVSMTLQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 172 ~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~v~~~~~~~ 239 (347)
+ ..+....... +...|.+++|+| +..+++++.|+.|++||+++ ++....+. |...|.+++|+|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 9 8776644445 778899999999 99999999999999999987 66555555 78899999999887
Q ss_pred EEEEEcCCCcEEEEeCCC-CCCcCceeEEEeccccccccceEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------eee
Q 019006 240 YLLTNGMDCKLCIWDMRP-YAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDTTSR------RIL 311 (347)
Q Consensus 240 ~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sgs~dg~i~vwd~~~~------~~~ 311 (347)
+++++.|+.|++||++. .... ....... ....+.+++|+| ++++|++|+.||.|++|++... +.+
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDN--GTIEESG----LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCC--CEEEECS----CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred -EEEEeCCCeEEEEECCcccccc--ceeeecC----CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99999999999999985 3221 1111222 235689999999 9999999999999999999887 777
Q ss_pred EEecCCcc---------CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTG---------SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~---------~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.+|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 88888865 9999999999999999999999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=243.52 Aligned_cols=264 Identities=15% Similarity=0.149 Sum_probs=220.6
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeEe
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSC 148 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 148 (347)
.++++++.|+.|++|++.. .+....+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 4688999999999999964 34555666664 58999999999987 677799999999999998887776555 77888
Q ss_pred ecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE-EEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 149 ~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
++++++..++++++.++.|++||+.+++.+..+.....+.+++|+|+++.+ ++++.++.|++||+++++....+..+.
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR- 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-
Confidence 888887767778888899999999998888877777789999999999977 678889999999999998888877664
Q ss_pred ceeEEEECCCCCEE-EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee---CCCeEEEE
Q 019006 228 MITGMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS---SDRMVYIW 303 (347)
Q Consensus 228 ~i~~v~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs---~dg~i~vw 303 (347)
.+.+++|+|+++++ ++++.++.|++||++.. .....+.. ...+..++|+|+|++|++++ .++.|++|
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC----eEEEEEec-----CCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 46999999999988 57788999999998743 33333332 23578899999999999888 68999999
Q ss_pred eCCCceeeEEecCCccCeeeEEEcCCCCEE-EEecCCCcEEeecC
Q 019006 304 DTTSRRILYKLPGHTGSVNESVFHATEPVI-GSCSSDKQIYLGEI 347 (347)
Q Consensus 304 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~i~i~~~ 347 (347)
|+.+++.+..+..|. .+..++|+|+++.| ++++.|+.|++||+
T Consensus 230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 999999998888765 57899999999877 68889999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=260.56 Aligned_cols=255 Identities=14% Similarity=0.071 Sum_probs=180.5
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee----eEEEeCcccceeEEEEcC--------CCCEEEEecCCCe
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN----FMVLKGHKNAILDLHWTT--------DGSQIISASPDKT 123 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~----~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~dg~ 123 (347)
|...+....+.+++.+||+|+.|++|++|+....... +..+.+|.+.|.+++|+| ++++|++++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 4444444445556778999999999999998654221 123578999999999997 7889999999999
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----------------------
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---------------------- 181 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---------------------- 181 (347)
|+|||+.++..+..+..|...+.+++++|.+..++++|+.|++|++||+++++.....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999998888888888888999999999887778999999999999999876532211
Q ss_pred ----CCCCceEEEEEc-CCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 182 ----PDKYQITAVSFS-DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 182 ----~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.+...+.++.|. +++..+++++.|+.+++||+..++....+..|...+..+.+.|+.+.+.....
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------- 317 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS---------- 317 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC----------
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc----------
Confidence 123456778876 78999999999999999999988877777777777777777765432211110
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECC--CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSP--DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
...+.|+| ++.++++|+.||.|++||..+++.+..+.+|...|.+++|+|++++||
T Consensus 318 ----------------------~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 318 ----------------------LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp ----------------------SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred ----------------------ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 11112333 455778899999999999999998888889999999999999999999
Q ss_pred EecCCCcE
Q 019006 335 SCSSDKQI 342 (347)
Q Consensus 335 s~s~D~~i 342 (347)
+++.||.+
T Consensus 376 ~as~~Gv~ 383 (393)
T 4gq1_A 376 IATEGSVL 383 (393)
T ss_dssp EEESSEEE
T ss_pred EEeCCCeE
Confidence 99988763
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=260.20 Aligned_cols=245 Identities=12% Similarity=0.103 Sum_probs=203.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc-----ceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN-----AILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
+|...|.+++|+|+|..||+++.||+|++|+..+ .+..+. |.. .|.+++|||||++|++|+.||+|++||+
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 6788999999999999999999999999999643 344455 655 5999999999999999999999999999
Q ss_pred CCCce-------eeee----eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce---eec--CCCCceEEEEEc
Q 019006 130 ETGKQ-------IKKM----AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI---QTF--PDKYQITAVSFS 193 (347)
Q Consensus 130 ~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~--~~~~~v~~~~~~ 193 (347)
.++.. +..+ .+|...|..+++++++ +++++.|+++++||+..+... +.+ .+...|.+++|+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 98752 4555 4566799999999876 778889999999999877632 344 345789999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEE--CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSL--SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~--~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 271 (347)
++.+++++ +++|++||+..++......+|...+.+++| +|++..+++++.||+ ++|...
T Consensus 236 --g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------- 296 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------- 296 (588)
T ss_dssp --TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------
T ss_pred --CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------
Confidence 58888887 699999999988764444489999999999 999999999999999 999864
Q ss_pred ccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC
Q 019006 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 272 ~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
.++++||+..+++. |+++++|+...+. +..+.+ ...|.+++|+|+|+.+|+++.
T Consensus 297 ---------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ---------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 13378999888875 9999999976554 445555 667999999999999999874
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=243.28 Aligned_cols=281 Identities=16% Similarity=0.261 Sum_probs=197.6
Q ss_pred cCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCC---CCEEEEecCCCeEEEEEC
Q 019006 54 TGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTD---GSQIISASPDKTLRAWDV 129 (347)
Q Consensus 54 ~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~ 129 (347)
.+|...|.+++|+| ++.+|++++.||.|++|++... .....+ .+...+.++.|++. +.++++++.||.|++||+
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 36999999999999 7789999999999999999643 333333 36778999999984 459999999999999999
Q ss_pred CCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-ceeec----------------CCCCceEEEEE
Q 019006 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQTF----------------PDKYQITAVSF 192 (347)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~----------------~~~~~v~~~~~ 192 (347)
.+++.+..+..|...+..+++.+.+..++++++.||.|++||++... .+..+ .+...+.+++|
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 99998888988999999999999887789999999999999998654 22222 34567999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-----CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-----DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
+|+++++++++.||.|++||+++++....+..+. ..+........+..+++++.|+.|++||+.. ...+..
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----~~~~~~ 329 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS----GEQITM 329 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT----CCEEEE
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC----Ccceee
Confidence 9999999999999999999999887654443221 1122222233456677778899999999974 345566
Q ss_pred EeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC-CCEEEEecCCCcEEeec
Q 019006 268 LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT-EPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~i~~ 346 (347)
+.+|. ..+.+++|+|++++|++|+.||.|++||+.+++.+.....+.. ...+.+. .....+++.|+.+.+|+
T Consensus 330 ~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 330 LKGHY----KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp ECCCS----SCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred eccCC----CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 66553 5789999999999999999999999999999887765544332 2234443 34556777899999996
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
.
T Consensus 403 ~ 403 (408)
T 4a11_B 403 H 403 (408)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=246.19 Aligned_cols=243 Identities=12% Similarity=0.142 Sum_probs=188.0
Q ss_pred EecCccccEEEEEECCCCCeEEE-----------eeCCCcEEEEeccCCCeeeEE--------EeCcccceeEEEEcCCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIAS-----------GSHDRDIFLWHVHGDCKNFMV--------LKGHKNAILDLHWTTDG 112 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s-----------~~~d~~v~~w~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~ 112 (347)
.|.+|...|.+++++ +..+++ ++.|+.+++|++......... ...+...+..++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 567888889888764 445554 456788999998643322211 12344568899999999
Q ss_pred CEEEE--ecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCce
Q 019006 113 SQIIS--ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQI 187 (347)
Q Consensus 113 ~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v 187 (347)
+++++ ++.|++|+|||+.+++.+..+. |...|.++++++++ .++++++.+ .+++|+..++...... .+...+
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 99765 4578999999999998887775 66779999998876 577777754 5666766666554322 345679
Q ss_pred EEEEEcCCCCeEEEEecCC----cEEEEeCCCCce----EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 188 TAVSFSDASDKIYTGGIDN----DVKVWDLRKGEV----SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
.+++|+|++..+++++.|+ .+++||+..... ...+.+|...|++++|+|+|++||+|+.|++|+|||++.
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-- 300 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-- 300 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--
Confidence 9999999999999999887 588898876543 345678899999999999999999999999999999874
Q ss_pred CcCceeEEE-eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 260 PQNRCVKIL-EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.+++..+ .+| ...|.+++|+|||++||+||.|++|+|||+..
T Consensus 301 --~~~~~~~~~gH----~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 301 --LSMSKIFKQAH----SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp --TEEEEEETTSS----SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred --CcEEEEecCcc----cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 3444443 455 36799999999999999999999999999854
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=250.32 Aligned_cols=254 Identities=19% Similarity=0.325 Sum_probs=208.8
Q ss_pred CeeEecCccccEEEEEECC-CCCeEEEeeCCCcEEEEeccCCC------eeeEEEeCcccceeEEEEcCCC-CEEEEecC
Q 019006 49 PIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDC------KNFMVLKGHKNAILDLHWTTDG-SQIISASP 120 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 120 (347)
....+.+|.+.|++++|+| ++.+||+|+.||.|++|++.... .....+.+|...|.+++|+|++ .+|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3445789999999999999 89999999999999999986432 3456788999999999999998 69999999
Q ss_pred CCeEEEEECCCCceeeee--eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-C-CCC-ceEEEEEcCC
Q 019006 121 DKTLRAWDVETGKQIKKM--AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-P-DKY-QITAVSFSDA 195 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~-~~~-~v~~~~~~~~ 195 (347)
||.|++||+.+++.+..+ ..|...+.++++++++ .++++++.|+.|++||++++..+..+ . +.. .+.++.|+|+
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 999999999999988888 7788999999998865 57889999999999999998887776 3 333 4899999999
Q ss_pred CCeEEEE---ecCCcEEEEeCCCCce-EEE-ecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 196 SDKIYTG---GIDNDVKVWDLRKGEV-SMT-LQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 196 ~~~l~~~---~~dg~i~iwd~~~~~~-~~~-~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
+.++++| +.|+.|++||+++++. ... ...|...+.+++|+|++++|++ ++.|+.|++||+....+ .+..+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~ 308 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---FLHYLS 308 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---CEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---ceEeec
Confidence 9999998 7999999999987654 222 2246677999999999999975 55799999999986432 133343
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
.+. ....+.+++|+|++.++++ .++.+++|++.++.+
T Consensus 309 ~~~--~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFS--SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEC--CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccc--cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 332 2357889999999998875 456999999987654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=232.22 Aligned_cols=284 Identities=14% Similarity=0.124 Sum_probs=222.9
Q ss_pred eeEecCccccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAW 127 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iw 127 (347)
+..+.+|. .+.+++|+|+++.| ++++.|+.|++|++.. .+....+..+. .+.+++|+|++++|+ +++.|+.|++|
T Consensus 25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence 34455664 58999999999876 6777999999999854 34444555544 899999999999875 55577999999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeE-EEEecCC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKI-YTGGIDN 206 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg 206 (347)
|+.+++.+..+..+ ..+..+++++++..++++++.++.|++||+.+++.+..+.....+..++|+|+++.+ ++++.++
T Consensus 102 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 102 DTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp ETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred ECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCC
Confidence 99998887766544 456778888887666689999999999999988888877777778999999999987 5677889
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
.|++||+++++....+.. ...+.+++|+|+++++++++ .++.|++||+... ..+..+..+ ..+..++
T Consensus 181 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~-----~~~~~~~ 250 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----KITARIPVG-----PDPAGIA 250 (391)
T ss_dssp EEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----EEEEEEECC-----SSEEEEE
T ss_pred EEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC----eEEEEEecC-----CCccEEE
Confidence 999999999887776654 46789999999999999887 6899999998743 344455443 2467899
Q ss_pred ECCCCCEE-EEeeCCCeEEEEeCCCceeeEEecCCccCee---eEEEcC------------CC----------CEEEEec
Q 019006 284 WSPDGSKV-TAGSSDRMVYIWDTTSRRILYKLPGHTGSVN---ESVFHA------------TE----------PVIGSCS 337 (347)
Q Consensus 284 ~s~~g~~l-~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~---~~~~~~------------~~----------~~l~s~s 337 (347)
|+|+|++| ++++.|+.|++||+.+++++..+..|..+.. .+.+.| +. ..+.+.+
T Consensus 251 ~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~ 330 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLS 330 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECC
T ss_pred EccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCC
Confidence 99999988 6778899999999999999988877754321 122222 11 3466777
Q ss_pred CCCcEEeecC
Q 019006 338 SDKQIYLGEI 347 (347)
Q Consensus 338 ~D~~i~i~~~ 347 (347)
.|..+++||+
T Consensus 331 ~~~~~~~W~~ 340 (391)
T 1l0q_A 331 KDATEWKWDF 340 (391)
T ss_dssp BSCSEEEEEC
T ss_pred CCceEEEEEC
Confidence 8999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=240.35 Aligned_cols=240 Identities=11% Similarity=0.116 Sum_probs=183.9
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
+.....|...|.+++|+|+|++|++|+.|+ +++|++.+++.......+ .+..+.+.+....++++++.|++|++||.
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 345678999999999999999999988775 789999887665443322 24445555555555678888999999999
Q ss_pred CCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-ceEEEecCCCCceeEEEECCCCCEEEE--EcCCCc
Q 019006 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-EVSMTLQGHQDMITGMSLSPDGSYLLT--NGMDCK 249 (347)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~t--~~~d~~ 249 (347)
.+++.+..+.+...+.++.++++. ++++ .++.|++||+.++ +....+.. ....+++++ .+++. ++.||.
T Consensus 89 ~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 89 VKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred CCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 999888888887899999998753 4433 4789999999887 55544443 344556666 56666 588999
Q ss_pred EEEEeCCCCCCc----C-------c-eeEEEeccccccccceEEEEECCCCCEEEEeeCCCe-EEEEeCCCceeeEEec-
Q 019006 250 LCIWDMRPYAPQ----N-------R-CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM-VYIWDTTSRRILYKLP- 315 (347)
Q Consensus 250 i~~wd~~~~~~~----~-------~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~-i~vwd~~~~~~~~~~~- 315 (347)
|++||++..... . . +...+.+| ...|.+++|+|+|++|++|+.||. |++||+.+++++..+.
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h----~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~ 236 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH----TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR 236 (355)
T ss_dssp EEEEECCC------------------CCEEECCC----SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEcc----CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 999999753200 0 0 14455555 357999999999999999999998 9999999999999998
Q ss_pred C-CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 316 G-HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 316 ~-h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+ |...|.+++|+|++++|++++.|++|++||+
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 6 9999999999999999999999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=224.37 Aligned_cols=245 Identities=18% Similarity=0.344 Sum_probs=199.7
Q ss_pred EecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+.+|...|++++|+|++++||+|+.||+|++|++.. .+....+.+|...+.++.+ ++..+++++.++.+++|+...
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~ 138 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV 138 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCC
Confidence 3457888999999999999999999999999999964 4566778899988887655 467999999999999999876
Q ss_pred C-ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-----ecCCCCceEEEEEcCCCCeE---EEE
Q 019006 132 G-KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-----TFPDKYQITAVSFSDASDKI---YTG 202 (347)
Q Consensus 132 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l---~~~ 202 (347)
. ..+..+..|...+..+.+.+.+ .++++++.|++|++||+++++... ...+...+.++.+.+.+..+ +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 139 AEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred CceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence 5 4456677788888877777665 588999999999999998765322 22345678999999887644 356
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
+.++.|++||.+......... +...+..+.|+|+++.+++++ .|+.|++||++. ..++..+.+|. ..|.
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~----~~~~~~l~gH~----~~V~ 288 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----MAKVAELKGHT----SRVL 288 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT----CCEEEEECCCS----SCEE
T ss_pred CCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC----CcEEEEEcCCC----CCEE
Confidence 788999999998887665554 556789999999999887654 799999999874 35567777764 5799
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
+++|+|+|++|++||.||.|+|||+.+.+
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999999999999999987543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=240.08 Aligned_cols=230 Identities=23% Similarity=0.406 Sum_probs=200.8
Q ss_pred eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 176 (347)
.+|...|.++.| ++++|++|+.||.|++||+.+++....+..|...|.++.+ ++.++++|+.||+|++||+.++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCc
Confidence 456677888877 6889999999999999999999999999999999988877 34689999999999999999988
Q ss_pred ceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE---EEecCCCCceeEEEECCCCCEEEEEcCCCcEEE
Q 019006 177 AIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS---MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCI 252 (347)
Q Consensus 177 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~ 252 (347)
.+..+. +...+.++.|++ +.+++|+.||.|++||++++... ..+.+|...|.+++| +++++++++.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 877765 456799999974 69999999999999999887654 677889999999999 7889999999999999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
||++. ..++..+.+|. ..+.++.| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+
T Consensus 281 wd~~~----~~~~~~~~~~~----~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 281 WNTST----CEFVRTLNGHK----RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp EETTT----CCEEEEEECCS----SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred EECCc----CcEEEEEcCCC----CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 99974 34556666553 45777777 5789999999999999999999999999999999999999 7889
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
|++++.||.|++||+
T Consensus 349 l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 349 IVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEETTSCEEEEEH
T ss_pred EEEEeCCCcEEEEEC
Confidence 999999999999984
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=236.24 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=202.7
Q ss_pred eeeEEEeCcccceeEEEEcCC---CCEEEEecCCCeEEEEECCC-Ccee-eeeeccCcceeEeecCCCCCCEEEEEcCCC
Q 019006 91 KNFMVLKGHKNAILDLHWTTD---GSQIISASPDKTLRAWDVET-GKQI-KKMAEHNSFVNSCCPSRRGPPLVVSGSDDG 165 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~ 165 (347)
..+..+.+|...|.+++|+|+ |++|++++.||.|++||+.+ +..+ ..+..|...+..+++++++ .++++++.|+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCC
Confidence 445667899999999999999 59999999999999999987 5544 6777899999999998854 5888999999
Q ss_pred ceEEEeCCCCCceeecCCCCceEEEEE--cCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 019006 166 TAKLWDMRQRGAIQTFPDKYQITAVSF--SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t 243 (347)
.|++||+.++..+....+...+.++.| ++++..+++++.||.|++||+++++....+..+. .+.++.+. ...+++
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ 185 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVV 185 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEE
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEE
Confidence 999999999888887788889999999 8999999999999999999999998888887765 45666665 458888
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE----EEEeeCCCeEEEEeCCCc---eeeEEecC
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK----VTAGSSDRMVYIWDTTSR---RILYKLPG 316 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~----l~sgs~dg~i~vwd~~~~---~~~~~~~~ 316 (347)
++.++.+.+||++... ........ ........+.+.++... +++|+.||.|++||+... ..+..+.+
T Consensus 186 ~~~~~~i~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 186 ATAERGLIVYQLENQP---SEFRRIES---PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp EEGGGCEEEEECSSSC---EEEEECCC---SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred EeCCCcEEEEEecccc---chhhhccc---cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 8999999999997532 11121111 11223444444444433 999999999999999887 56778888
Q ss_pred Ccc------------CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 317 HTG------------SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 317 h~~------------~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 887 7999999999999999999999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=243.64 Aligned_cols=237 Identities=15% Similarity=0.208 Sum_probs=197.1
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCc---eeeeeecc------------------------------------
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEH------------------------------------ 141 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~------------------------------------ 141 (347)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999966655 57899999999888 55444322
Q ss_pred ------------------CcceeEeecCCCCCCEEEEEcCCCceEEEeCC--CCCceeec---CCCCceEEEEEcCCCCe
Q 019006 142 ------------------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR--QRGAIQTF---PDKYQITAVSFSDASDK 198 (347)
Q Consensus 142 ------------------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~ 198 (347)
...|.++++++++..++++++.|+.|++||+. ++..+..+ .+...+.+++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 22578888888876556899999999999998 77777665 44578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCceEE----EecCCCCceeEEEECCC---CCEEEEEcCCCcEEEEeCCCCCCcCceeEE-Eec
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSM----TLQGHQDMITGMSLSPD---GSYLLTNGMDCKLCIWDMRPYAPQNRCVKI-LEG 270 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~v~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~-~~~ 270 (347)
|++++.+|.|++|++.+++... .+.+|...|++++|+|+ +++|++++.|+.|++||++.. .++.. +.+
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~ 239 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC----FIVDKWLFG 239 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT----TCEEEECCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC----ceeeeeecC
Confidence 9999999999999998776443 67789999999999999 999999999999999998743 23333 334
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-------------------------ccCeeeEE
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-------------------------TGSVNESV 325 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-------------------------~~~v~~~~ 325 (347)
| ...+.+++|+ ++++|++|+.|+.|++||+.+++++..+..+ ...|..++
T Consensus 240 h----~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 240 H----KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp C----SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred C----CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 4 3578999999 9999999999999999999999988877633 35689999
Q ss_pred EcCCCCEEEEec-CCCcEEeecC
Q 019006 326 FHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 326 ~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
|+|++++|++++ .|+.|++|++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999998 8999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=238.36 Aligned_cols=226 Identities=8% Similarity=0.023 Sum_probs=177.5
Q ss_pred EcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC---------CCCce
Q 019006 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR---------QRGAI 178 (347)
Q Consensus 108 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~---------~~~~~ 178 (347)
+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+.+++. +++++.|+++++|+.. ++..+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 44577899999999999999999998877765 334444555543 8899999999999765 33333
Q ss_pred eec--CCCCceEEEEEcC--CCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 179 QTF--PDKYQITAVSFSD--ASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 179 ~~~--~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
..+ .+...|.+++|+| +++++++++.||.|++||+++++...... .|...+.+++|+|++++|++|+.|+.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 333 3446799999999 99999999999999999999988866553 345579999999999999999999999999
Q ss_pred eCCCCCCcCceeEEEec-cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC---CccCee--eEEEc
Q 019006 254 DMRPYAPQNRCVKILEG-HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVN--ESVFH 327 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~--~~~~~ 327 (347)
|++..... ...+.. | ...+.+++|+|+|.+|++|+. +.|++||+++++.+..+.. |...+. .++|+
T Consensus 198 d~~~~~~~---~~~~~~~h----~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 198 NLSSPDQA---SSRFPVDE----EAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp ESSCTTSC---CEECCCCT----TSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred ECCCCCCC---ccEEeccC----CCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 99864321 133443 3 367999999999999999994 5999999999877655544 445555 59999
Q ss_pred CCCCEEEEecC-CCcEEeecC
Q 019006 328 ATEPVIGSCSS-DKQIYLGEI 347 (347)
Q Consensus 328 ~~~~~l~s~s~-D~~i~i~~~ 347 (347)
|++++|++++. |+.|++|++
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEEE
Confidence 99999999998 999999963
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=220.92 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=182.6
Q ss_pred cEEEEEECCCCC---eEEEeeCCCcEEEEeccCC--CeeeEEEeCcccceeEEEEcCCCCEEEEec--CCCeEEEEECC-
Q 019006 59 AVYTMKFNPAGT---VIASGSHDRDIFLWHVHGD--CKNFMVLKGHKNAILDLHWTTDGSQIISAS--PDKTLRAWDVE- 130 (347)
Q Consensus 59 ~V~~v~~~~~~~---~l~s~~~d~~v~~w~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~- 130 (347)
.+.+|-|-..|- -++++++ ..|++|+.... .+....+.+|..+|..+.+.||..-|++.. .=..-.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 466777766553 4556655 68999999653 266778889998888888888644333221 11111111111
Q ss_pred -CC----ceeeeeeccCcceeEeecCCCCCCEEEEEc--CCCceEEEeCCC-CCceeec-CCCCceEEEEEcC---CCCe
Q 019006 131 -TG----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS--DDGTAKLWDMRQ-RGAIQTF-PDKYQITAVSFSD---ASDK 198 (347)
Q Consensus 131 -~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~-~~~~~~~-~~~~~v~~~~~~~---~~~~ 198 (347)
.. ........+...+..+ .+..++.++. .|+.|++|++.. ++.+..+ .+...+..++|++ ++..
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred CCCccccccEEEeCCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCce
Confidence 00 1111111122223222 2334555533 599999999954 5554443 3445677788887 6789
Q ss_pred EEEEecCCcEEEEeCCCCceEEEecCCCC---ceeEEEECCCCCEE------------EEEcCCCcEEEEeCCCCCCcCc
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQD---MITGMSLSPDGSYL------------LTNGMDCKLCIWDMRPYAPQNR 263 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~v~~~~~~~~l------------~t~~~d~~i~~wd~~~~~~~~~ 263 (347)
+++++.|++|++||++++++..++.+|.. .+.+++|+|++.++ ++|+.|++|++||... ..
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t----gk 271 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT----TL 271 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT----TE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC----CE
Confidence 99999999999999999999999986543 56777999999876 5678899999999874 23
Q ss_pred eeEEE-----eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee-eEEEcCCCCEEEEec
Q 019006 264 CVKIL-----EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN-ESVFHATEPVIGSCS 337 (347)
Q Consensus 264 ~~~~~-----~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s 337 (347)
++..+ .+|. ..+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. .++|+|++++|+|++
T Consensus 272 ~l~v~~~~~p~Gh~----~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 272 SVGVMLYCLPPGQA----GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp EEEEEEECCCTTCC----CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred EEEEEEeeccCCCc----ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 33332 1222 22333333 388999999999999999999999999999988766 589999999999999
Q ss_pred CCCcEEeecC
Q 019006 338 SDKQIYLGEI 347 (347)
Q Consensus 338 ~D~~i~i~~~ 347 (347)
.|++|+|||+
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999984
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-30 Score=224.16 Aligned_cols=257 Identities=15% Similarity=0.215 Sum_probs=179.3
Q ss_pred CeeEecCccccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCC--------eeeEEEeCcccceeEEEEcCC--CCEEE
Q 019006 49 PIMLLTGHQSAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDC--------KNFMVLKGHKNAILDLHWTTD--GSQII 116 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~--------~~~~~~~~h~~~v~~~~~~~~--~~~l~ 116 (347)
....+.+|...|.+++|+| ++.+|++|+.||.|++|++.... .....+.+|...|.+++|+|+ +.+|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 3456789999999999999 69999999999999999996432 445678899999999999999 99999
Q ss_pred EecCCCeEEEEECCCCceeeeee-------------ccCcceeEeecCCC--CCCEEEEEcCCCceEEEeCCCCCc--ee
Q 019006 117 SASPDKTLRAWDVETGKQIKKMA-------------EHNSFVNSCCPSRR--GPPLVVSGSDDGTAKLWDMRQRGA--IQ 179 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~--~~ 179 (347)
+++.||.|++||+.+++.+..+. .+...+..+.+.+. ...++++++.++.+.+|+...+.. +.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA 208 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee
Confidence 99999999999998876544332 35556677777765 457899999999998888776654 34
Q ss_pred ecC-CCCceEEEEEcCCC----CeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC----CCcE
Q 019006 180 TFP-DKYQITAVSFSDAS----DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM----DCKL 250 (347)
Q Consensus 180 ~~~-~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~----d~~i 250 (347)
.+. +...|.+++|+|++ .++++++.||.|++||++.+........+..........+....+..+.. ...+
T Consensus 209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 443 56789999999998 78999999999999999876554444333333334444444444444332 3334
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.+|+.. ....+..+.+| ...+.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 289 ~~~~~~----~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 289 ELQSNL----QVELLSEHDDH----NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp --CCSE----EEEEEEEECTT----SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred eecccc----cccEEEEEecc----cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 444432 23344555554 35799999999999999999999999999998765443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=215.33 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=147.9
Q ss_pred ccccEEEEEECCC----CCeEEEeeC--------------------CCcEEEEeccCCCeeeEEEeCcccceeEEEEcC-
Q 019006 56 HQSAVYTMKFNPA----GTVIASGSH--------------------DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTT- 110 (347)
Q Consensus 56 h~~~V~~v~~~~~----~~~l~s~~~--------------------d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~- 110 (347)
|...|++|+|+|+ ++.+++++. |+.|++|++..+.+....+.+|...+..++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 3456777788888 777777653 888999998555556667778888899999988
Q ss_pred --CCCEEEEecCCCeEEEEECCCCceeeeeeccCc---ceeEeecCCCCCC-----------EEEEEcCCCceEEEeCCC
Q 019006 111 --DGSQIISASPDKTLRAWDVETGKQIKKMAEHNS---FVNSCCPSRRGPP-----------LVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 111 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~-----------~~~s~~~d~~i~iwd~~~ 174 (347)
++.+|++++.|++|+|||+.+++.+..+..|.. .+..+++++++.. .+++|+.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 779999999999999999999999999876543 3444456665432 246789999999999998
Q ss_pred CCceeec----C--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCcee-EEEECCCCCEEEEEcCC
Q 019006 175 RGAIQTF----P--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT-GMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 175 ~~~~~~~----~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~v~~~~~~~~l~t~~~d 247 (347)
++.+..+ + +...+.+..+ ++..+++++.|++|+|||+.++++..++.+|...+. .++|+|+|++|++|+.|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 8766543 2 1222333333 367899999999999999999999999999987655 58999999999999999
Q ss_pred CcEEEEeC
Q 019006 248 CKLCIWDM 255 (347)
Q Consensus 248 ~~i~~wd~ 255 (347)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=217.67 Aligned_cols=279 Identities=13% Similarity=0.148 Sum_probs=213.6
Q ss_pred ccccEEEEE---ECCCCCeEEEe--------------eCCCcEEEEeccC--C-CeeeEEEeCcccceeEEEEcCCCCEE
Q 019006 56 HQSAVYTMK---FNPAGTVIASG--------------SHDRDIFLWHVHG--D-CKNFMVLKGHKNAILDLHWTTDGSQI 115 (347)
Q Consensus 56 h~~~V~~v~---~~~~~~~l~s~--------------~~d~~v~~w~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~l 115 (347)
....+..++ |+|++..++.. +.++.+.+|.++. . ......+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 455678888 88877765543 3334334554432 1 1333344444 456689999977788
Q ss_pred EEecCCCeEEEEECCCCceee-----eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEE
Q 019006 116 ISASPDKTLRAWDVETGKQIK-----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITA 189 (347)
Q Consensus 116 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~ 189 (347)
++++.|+.|++||+.+++... .+..|...+..+.+.+. ..++++++.|+.|++||+++++.+..+. +...+.+
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 888889999999999988766 33456677888887554 4688999999999999999888777665 4567999
Q ss_pred EEEcCCCCeEEE-EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--------CCCcEEEEeCCCCCC
Q 019006 190 VSFSDASDKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--------MDCKLCIWDMRPYAP 260 (347)
Q Consensus 190 ~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--------~d~~i~~wd~~~~~~ 260 (347)
++|+|+++.+++ ++.++.|++||+++++....+..+ ..+.+++|+|+++++++++ .|+.|++||++..
T Consensus 217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-- 293 (433)
T 3bws_A 217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-- 293 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--
T ss_pred EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--
Confidence 999999998864 558999999999999887777664 4589999999999999888 5889999998743
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEE-EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecC-
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKV-TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSS- 338 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~- 338 (347)
.....+. ....+..++|+|+++.| ++++.|+.|++||+.+++.+..+. +...+..++|+|+++.+++++.
T Consensus 294 --~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 294 --KLIDTIG-----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp --EEEEEEE-----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECC
T ss_pred --cEEeecc-----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecC
Confidence 2222221 12357789999999755 667899999999999998888776 6778999999999998887776
Q ss_pred --------------CCcEEeecC
Q 019006 339 --------------DKQIYLGEI 347 (347)
Q Consensus 339 --------------D~~i~i~~~ 347 (347)
||.|++||+
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEET
T ss_pred CCccccccccccccceEEEEEEC
Confidence 579999984
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=220.14 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=218.9
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEcC----CCCEEEEecC-CCeEEEEECCCCc
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTT----DGSQIISASP-DKTLRAWDVETGK 133 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~ 133 (347)
++.++|+|+|++|++++.|++|++||+. ...+....+. +...+..++|+| +|+++++++. +++|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 8999999999999999999999999993 1234444555 345679999999 9999998884 8999999999998
Q ss_pred eeeeeecc-----------CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee--ecCCCCceEEEEEcCCCCeEE
Q 019006 134 QIKKMAEH-----------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ--TFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 134 ~~~~~~~~-----------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~ 200 (347)
.+..+..+ ...+..+.+++.+..++++...+++|.+||....+.+. .+.....+..+.|+|++++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 87776542 12566777888777888999999999999998765443 444555677899999999877
Q ss_pred EEe-cCCcEEEEeCCCCceEEEecC----CCCceeEEEECCC-CCEEEEEc-CCCcEEEEeCCCCC---CcCceeEEEec
Q 019006 201 TGG-IDNDVKVWDLRKGEVSMTLQG----HQDMITGMSLSPD-GSYLLTNG-MDCKLCIWDMRPYA---PQNRCVKILEG 270 (347)
Q Consensus 201 ~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~~~-~~~l~t~~-~d~~i~~wd~~~~~---~~~~~~~~~~~ 270 (347)
+++ .+++|.+||..++++...+.. |......+ ++|+ +..++++. .|++|.+||+.+.. ...++++.+..
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 654 688999999999998877764 54333333 4676 66667765 58999999997521 12567777776
Q ss_pred cccccccceEEEEECCCCCEEEEee-------CCCeEEEEeCCCceee-EEe--------cCCccCeeeEEEcCCCCEEE
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGS-------SDRMVYIWDTTSRRIL-YKL--------PGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs-------~dg~i~vwd~~~~~~~-~~~--------~~h~~~v~~~~~~~~~~~l~ 334 (347)
+. .....++++|+|++|++++ .++.|.|||..+++.. ..+ ..|...+..++|+|+++.+.
T Consensus 419 ~g----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 419 QG----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp SC----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred CC----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 64 2356678999999999987 2779999999998877 343 46678899999999999887
Q ss_pred Ee-----cCCCcEEeecC
Q 019006 335 SC-----SSDKQIYLGEI 347 (347)
Q Consensus 335 s~-----s~D~~i~i~~~ 347 (347)
.+ +.|+.|.|||.
T Consensus 495 ~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEECCTTSCCEEEEEET
T ss_pred EEeecCCCCCCeEEEEEC
Confidence 55 35899999983
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=218.60 Aligned_cols=265 Identities=15% Similarity=0.151 Sum_probs=206.2
Q ss_pred ecCccccEEEEEECC--------------CCCeEEEeeCC------CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCC
Q 019006 53 LTGHQSAVYTMKFNP--------------AGTVIASGSHD------RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~--------------~~~~l~s~~~d------~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 112 (347)
+.+|...+..+++++ .+..++.++.+ +.|++||..+. ....+.+|...+.+++|+|+|
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTS
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCC
Confidence 566666666665553 25566665554 79999999653 345677899999999999999
Q ss_pred CEEEEecCCC---eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc--eEEEeCCCCCceeecCCCCce
Q 019006 113 SQIISASPDK---TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT--AKLWDMRQRGAIQTFPDKYQI 187 (347)
Q Consensus 113 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v 187 (347)
++|++++.++ .|++||+.+++.. .+..+...+..+.+++++..++++++.++. |++||+.+++......+...+
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~ 269 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN 269 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCE
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcc
Confidence 9999999885 9999999988764 466677778888999887766667777665 899999887765544556679
Q ss_pred EEEEEcCCCCeEEEEec-CC--cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---CcEEEEeCCCCCCc
Q 019006 188 TAVSFSDASDKIYTGGI-DN--DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---CKLCIWDMRPYAPQ 261 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~ 261 (347)
.+++|+|+++.|+.++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|+.++.+ ..|.+||+....
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-- 346 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-- 346 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--
Confidence 99999999999988776 44 688889887764 3455566788999999999999988764 589999987432
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
. ..+..+ ..+..++|+|||++|++++.++ .|++||+. +..+.++.+|.+.|.+++|+|..++
T Consensus 347 --~-~~l~~~-----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 347 --V-QVLSST-----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp --E-EECCCS-----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred --E-EEecCC-----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence 2 223322 1578899999999999988877 79999987 5556789999999999999998753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=215.57 Aligned_cols=278 Identities=14% Similarity=0.033 Sum_probs=211.4
Q ss_pred ccccEEEEEECCCC-CeEEEee----CCC----cEEEEec--cCCCee-eEEEeCcccceeEEEEcC-------------
Q 019006 56 HQSAVYTMKFNPAG-TVIASGS----HDR----DIFLWHV--HGDCKN-FMVLKGHKNAILDLHWTT------------- 110 (347)
Q Consensus 56 h~~~V~~v~~~~~~-~~l~s~~----~d~----~v~~w~~--~~~~~~-~~~~~~h~~~v~~~~~~~------------- 110 (347)
+...+....|.+.| +.+++|+ .|| ++++||+ ...... ...+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34567777888877 4666776 567 8999999 543322 245788888877776664
Q ss_pred -CCCEEEEecCC------CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC---ceEEEeCCCCCceee
Q 019006 111 -DGSQIISASPD------KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG---TAKLWDMRQRGAIQT 180 (347)
Q Consensus 111 -~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~ 180 (347)
.+..++.++.+ +.|++||+.. .....+..|...+..+++++++. .+++++.++ .|++||+.+++....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 25667766654 7999999974 44567777888899999998765 667777664 999999998877655
Q ss_pred cCCCCceEEEEEcCCCCeEE-EEecCCc--EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC-CC--cEEEEe
Q 019006 181 FPDKYQITAVSFSDASDKIY-TGGIDND--VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DC--KLCIWD 254 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~-d~--~i~~wd 254 (347)
..+...+.+++|+|+++.|+ +++.++. |++||+++++. ..+..|...+.+++|+|+|++|+.++. ++ .|.+||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 55667899999999999887 6666655 99999988765 567778888999999999999988876 44 677778
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC---CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD---RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
+.... ...+..+ ...+..++|+|||++|++++.+ +.|++||+.+++.. .+..|. .+..++|+|+++
T Consensus 298 ~~~~~-----~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 298 INGGA-----PQRITWE----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp TTSSC-----CEECCCS----SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS
T ss_pred CCCCC-----EEEEecC----CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC
Confidence 76432 1222222 2357789999999999988764 58999999988764 566665 899999999999
Q ss_pred EEEEecCCC---cEEeecC
Q 019006 332 VIGSCSSDK---QIYLGEI 347 (347)
Q Consensus 332 ~l~s~s~D~---~i~i~~~ 347 (347)
.|++++.|+ .|++||+
T Consensus 367 ~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred EEEEEEcCCCccEEEEEEC
Confidence 999999877 7999874
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=202.09 Aligned_cols=274 Identities=10% Similarity=0.174 Sum_probs=194.4
Q ss_pred eEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCC-CeEEEEECC--CCc--eeeeeeccCcc
Q 019006 71 VIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPD-KTLRAWDVE--TGK--QIKKMAEHNSF 144 (347)
Q Consensus 71 ~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~ 144 (347)
++++++.|+.|++|++.... ........|...+..++|+|++++|++++.+ +.|++|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44555889999999985322 1222234567788999999999998888876 999999997 444 233343333 5
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCC---CCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCC-CceE
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMR---QRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRK-GEVS 219 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~ 219 (347)
+..+++++++..+++++..++.|.+||+. .......+.....+.+++|+|+++.+++++ .++.|++||+.+ ++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 66778888776566666778999999994 334455555566788999999999888877 889999999987 5443
Q ss_pred E----EecC-CCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEecccc--ccccceEEEEECCCCCEE
Q 019006 220 M----TLQG-HQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQH--NFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 220 ~----~~~~-~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l 291 (347)
. .+.. ....+..++|+|++++++++ ..++.+.+||+.................. .....+..++|+|+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2222 23467889999999977655 47899999999642211121222221111 112346678999999988
Q ss_pred E-EeeCCCeEEEEeCC----CceeeEEecCCccCeeeEEEcCCCCEEEEec-CCCcEEeec
Q 019006 292 T-AGSSDRMVYIWDTT----SRRILYKLPGHTGSVNESVFHATEPVIGSCS-SDKQIYLGE 346 (347)
Q Consensus 292 ~-sgs~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~ 346 (347)
+ ++..++.|++||+. ..+.+..+..+.. +..++|+|++++|+.++ .|+.|.+|+
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 7 45579999999998 3345556665554 89999999999777777 689999995
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-27 Score=215.21 Aligned_cols=274 Identities=10% Similarity=0.081 Sum_probs=209.5
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEEEEecCCCeEEEEEC--CCCceeeeeec
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQIISASPDKTLRAWDV--ETGKQIKKMAE 140 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~ 140 (347)
.|+|++.++++++.|++|.+||... .+....+. ++. +..++|+|+|++|++++.|+.|++||+ .+++.+..+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3789999999999999999999854 34445565 443 889999999999999999999999999 78887777763
Q ss_pred cCcceeEeecCC----CCCCEEEEEcCCCceEEEeCCCCCceeecCC------------CCceEEEEEcCCCCeE-EEEe
Q 019006 141 HNSFVNSCCPSR----RGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD------------KYQITAVSFSDASDKI-YTGG 203 (347)
Q Consensus 141 ~~~~v~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l-~~~~ 203 (347)
......+++++ ++..++++...+++|.+||..+.+++..++. ...+..+.++++++.+ ++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 44567788887 6654444444689999999998887776643 2268899999987655 5667
Q ss_pred cCCcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 204 IDNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
.++.|.+||+.+.+... .+. +...+.++.|+|++++++++ ..+++|.+||... .++...+......+.....
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t----g~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD----RRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT----TEEEEEEECSSSBCCTTCE
T ss_pred CCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC----CeEEEeeccCCCCCCCCCc
Confidence 88999999998765333 333 45668899999999987755 4588999999874 3455555432111122222
Q ss_pred EEEECCC-CCEEEEee-CCCeEEEEeCCC-------ceeeEEecCCccCeeeEEEcCCCCEEEEec-------CCCcEEe
Q 019006 281 KCGWSPD-GSKVTAGS-SDRMVYIWDTTS-------RRILYKLPGHTGSVNESVFHATEPVIGSCS-------SDKQIYL 344 (347)
Q Consensus 281 ~~~~s~~-g~~l~sgs-~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~D~~i~i 344 (347)
.. ++|+ |..++++. .|++|.+||..+ .++++++++|.+.+..++|||++++|.+++ .+++|.+
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 22 4677 66677775 689999999998 889999999999999999999999999987 3789999
Q ss_pred ecC
Q 019006 345 GEI 347 (347)
Q Consensus 345 ~~~ 347 (347)
||+
T Consensus 454 ~d~ 456 (543)
T 1nir_A 454 FDL 456 (543)
T ss_dssp EET
T ss_pred EEC
Confidence 985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=215.74 Aligned_cols=203 Identities=12% Similarity=0.111 Sum_probs=150.2
Q ss_pred EecCccccEEEEEECC--------CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCC-EEEEecCCC
Q 019006 52 LLTGHQSAVYTMKFNP--------AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS-QIISASPDK 122 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~--------~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg 122 (347)
.+.||.+.|++|+|+| ++++||||+.|++|++||+... .....+.+|...|.+++|+|++. +|++++.||
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 4689999999999997 7899999999999999999643 44556778889999999999874 799999999
Q ss_pred eEEEEECCCCceeeee-------------------------eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 123 TLRAWDVETGKQIKKM-------------------------AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
+|++||+.+++..... ..|...+..+.+...+...+++++.|+++++||+..+..
T Consensus 210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 9999999877543222 124445556666655667899999999999999976554
Q ss_pred eeecCC-------------------CCceEEEEEcC-CCC-eEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECC
Q 019006 178 IQTFPD-------------------KYQITAVSFSD-ASD-KIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236 (347)
Q Consensus 178 ~~~~~~-------------------~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~ 236 (347)
...+.. ........+++ .++ ++++|+.||.|++||+.+++....+..|...|.+++|+|
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence 333211 01111223333 233 566788999999999999988888888889999999999
Q ss_pred CCCEEEEEcCCCcEEEEeCC
Q 019006 237 DGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 237 ~~~~l~t~~~d~~i~~wd~~ 256 (347)
+|++||+++.+| +.+|.+.
T Consensus 370 dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEeCCC-eEEEEEe
Confidence 999999998765 6666653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=221.59 Aligned_cols=281 Identities=12% Similarity=0.138 Sum_probs=206.7
Q ss_pred cccEEEEEECCCCCeEEEeeC-CC-----cEEEEeccCCCeeeEEEeCcc------------------------cceeEE
Q 019006 57 QSAVYTMKFNPAGTVIASGSH-DR-----DIFLWHVHGDCKNFMVLKGHK------------------------NAILDL 106 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~-d~-----~v~~w~~~~~~~~~~~~~~h~------------------------~~v~~~ 106 (347)
...|.+++|+|+|+.|++++. |+ .|++|++.+. .....+..+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999998643 2333343332 237899
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC
Q 019006 107 HWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK 184 (347)
Q Consensus 107 ~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~ 184 (347)
+|+|||++|++++. +.|++||+.++. ....+..+...+..+.+++++. .++.++ ++.|++||+.++.........
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 99999999998886 999999998873 4455666777788888988875 555555 468999999877655443322
Q ss_pred Cc-----------------eEEEEEcCCCCeEEEEecCC---------------------------------cEEEEeCC
Q 019006 185 YQ-----------------ITAVSFSDASDKIYTGGIDN---------------------------------DVKVWDLR 214 (347)
Q Consensus 185 ~~-----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~ 214 (347)
.. +..+.|+|+++.|++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 21 47799999999999887765 78999998
Q ss_pred C-CceEEEec--CCCCceeEEEECCCCCEEEEEcC-----CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 215 K-GEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGM-----DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 215 ~-~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
+ ++...... .|...+..++| |+|++|+.++. +..|.+||+... .+...+..+.......+..++|+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN----QQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC----CEEEEEEEECSSCCCCCSCCEECT
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC----ceEEEEEcCCCCcCCcCCceEECC
Confidence 8 76544332 36678999999 99999987653 568999998753 233333332211111334678999
Q ss_pred CCCEEEEeeCCCeEEEEeCC-CceeeEEecCCccCeeeE-EEcCCCCEEE-EecCCC--cEEeecC
Q 019006 287 DGSKVTAGSSDRMVYIWDTT-SRRILYKLPGHTGSVNES-VFHATEPVIG-SCSSDK--QIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~s~D~--~i~i~~~ 347 (347)
||+++++++.||.++||.+. .+. ...+..|...+..+ .|+|+++.|+ +++.|+ .++||++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 99999999999977777654 344 77888888888887 5999998775 455555 8888863
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=188.51 Aligned_cols=274 Identities=14% Similarity=0.136 Sum_probs=193.0
Q ss_pred ECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCce-eeeeecc
Q 019006 65 FNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDVETGKQ-IKKMAEH 141 (347)
Q Consensus 65 ~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~ 141 (347)
|.+++ ..+++++.++.|++||.... +....+..+...+ .++|+|+++++++++. ++.|.+||..+++. ...+..+
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred EcCCCCEEEEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45544 45778889999999998643 3334445555566 9999999997766655 89999999999887 6666555
Q ss_pred CcceeEeecCCCCCCEEEEEcCC-C--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE-ecCCc-EEEEeCCCC
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDD-G--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG-GIDND-VKVWDLRKG 216 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~ 216 (347)
......+++++++. +++++..+ + .|.+||+.+++.+..++.......++|+|++++++++ ..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 55544367777765 45555444 3 8999999988888877777778999999999876655 45588 999998754
Q ss_pred ceE----EEecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 217 EVS----MTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 217 ~~~----~~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
... ............++|+|++++++. +..++.|.+||+...+. ...+..+... ..+..++|+|||++|
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~~-----~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGTN-----NLPGTIVVSRDGSTV 235 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEECS-----SCCCCEEECTTSSEE
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccCC-----CCCceEEECCCCCEE
Confidence 322 111123345789999999996655 45688999999875432 1113333322 345678899999977
Q ss_pred EEee-CCCeEEEEeCCCcee--eEEecCC----ccC---eeeEEEcCCCCEEEEe-cCCCcEEeecC
Q 019006 292 TAGS-SDRMVYIWDTTSRRI--LYKLPGH----TGS---VNESVFHATEPVIGSC-SSDKQIYLGEI 347 (347)
Q Consensus 292 ~sgs-~dg~i~vwd~~~~~~--~~~~~~h----~~~---v~~~~~~~~~~~l~s~-s~D~~i~i~~~ 347 (347)
+++. .++.|.+||..++++ +..+..+ ... ...++|+|+++.|+.+ ..++.|.+||+
T Consensus 236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 6554 578899999999877 4444332 222 3558999999977554 55679999985
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-25 Score=187.80 Aligned_cols=255 Identities=17% Similarity=0.198 Sum_probs=189.2
Q ss_pred EeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cceeeeeecc-CcceeEeecC
Q 019006 74 SGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET-GKQIKKMAEH-NSFVNSCCPS 151 (347)
Q Consensus 74 s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~ 151 (347)
+++.|+.|++|++.+. ....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+..+.++
T Consensus 17 ~~~~~~~i~~~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTT--EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCC--ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 4678899999998643 2335667888999999999999999886 78999999998 7665554444 3556677788
Q ss_pred CCCCCEEEEEc--CCCceEEEeC--CCCCceeecCCCCceEEEEEcCCCCeEE-EEecCCcEEEEeCCC-CceEEEecCC
Q 019006 152 RRGPPLVVSGS--DDGTAKLWDM--RQRGAIQTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVWDLRK-GEVSMTLQGH 225 (347)
Q Consensus 152 ~~~~~~~~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~ 225 (347)
+++. ++++++ .++...+|.+ ..+. ...+.....+..+.|+|+++.++ +++.++.+++|+++. +.....+..+
T Consensus 94 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 94 PDGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp TTSS-EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCCC-EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 7765 566666 3345666554 4443 34444444588899999999877 778899999998532 2334566667
Q ss_pred CCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-------
Q 019006 226 QDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD------- 297 (347)
Q Consensus 226 ~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d------- 297 (347)
...+.+++|+|++++++.++ .++.+.+|++.... .....+..+ ...+..++|+|+|++|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDS----AYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCC----SEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecC----CcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 78899999999999888766 58899999886321 223333333 2457789999999999988865
Q ss_pred ----CeEEEEeCCCcee--eEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 298 ----RMVYIWDTTSRRI--LYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 298 ----g~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
+.|++||+.+++. +..+.+|...+..++|+|+++.|++++.|.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 445568889999999999999999888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-24 Score=188.07 Aligned_cols=271 Identities=9% Similarity=0.101 Sum_probs=205.2
Q ss_pred ccccEEEEEECCCCCeEEEeeC-------CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEE
Q 019006 56 HQSAVYTMKFNPAGTVIASGSH-------DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAW 127 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~-------d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iw 127 (347)
....+..++|+|+++.|++++. ++.|.+||..+. +....+.. ...+..++|+|++++++ +...++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4567889999999998888774 567999998643 33333332 34578899999999655 55668999999
Q ss_pred ECCCCceeeeeeccCcc---------eeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCC
Q 019006 128 DVETGKQIKKMAEHNSF---------VNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDAS 196 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 196 (347)
|..+++.+..+..+... ...+.+++++..++++. ..++.|.+||..+++.+..++ ....+..++|+|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999887776654322 45677777776555555 458899999999888887777 45568889999999
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEecC----CCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecc
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQG----HQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGH 271 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~ 271 (347)
+.+++++.++.|.+||+.+++....+.. +...+.+++|+|+++++++++. ++.|.+||.... .....+...
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~ 272 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG----NILAKVAAP 272 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC----CEEEEEECS
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcC
Confidence 9999999999999999999987776653 4556788999999998776655 489999998743 333333322
Q ss_pred ccccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 272 QHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 272 ~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
. ...++|+|+|++++++. .++.|.+||..+++.+..+..+ ..+..++|+|+++.|..+..+
T Consensus 273 ~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 273 E------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp S------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred C------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 1 24578999999766555 7899999999999988887654 367999999999966555543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=183.33 Aligned_cols=270 Identities=11% Similarity=0.099 Sum_probs=184.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCC-CcEEEEecc--C-CCeeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHD-RDIFLWHVH--G-DCKNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d-~~v~~w~~~--~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
.|...+.+++|+|+|+.|++++.+ +.|.+|++. + .......+..+. .+..++|+|++++|++++ .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 466788899999999988888886 999999986 2 222233344443 789999999999887665 4889999999
Q ss_pred CC---CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCcee------ecCCCCceEEEEEcCCCCeE
Q 019006 130 ET---GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQ------TFPDKYQITAVSFSDASDKI 199 (347)
Q Consensus 130 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~------~~~~~~~v~~~~~~~~~~~l 199 (347)
.+ .+....+. ....+..+++++++..+++++..++.|.+||+.. +.... .......+..++|+|+++++
T Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 43 33333333 2334666778777765655555899999999987 44321 22234568889999999977
Q ss_pred EEEe-cCCcEEEEeCCC--Cce--EEEec---C-C--CCceeEEEECCCCCEEE-EEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 200 YTGG-IDNDVKVWDLRK--GEV--SMTLQ---G-H--QDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 200 ~~~~-~dg~i~iwd~~~--~~~--~~~~~---~-~--~~~i~~v~~~~~~~~l~-t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
++++ .++.|++||+.. ++. ...+. . + ...+..++|+|++++|+ ++..++.|.+||+.........+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 6554 789999999953 332 22221 1 1 23466899999999887 4557899999998732212223333
Q ss_pred EeccccccccceEEEEECCCCCEEEEee-CCCeEEEE--eCCCce--eeEEecCCccCeeeEEEcCCCCE
Q 019006 268 LEGHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIW--DTTSRR--ILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vw--d~~~~~--~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
+..+ ..+..++|+|+|++|++++ .++.|.+| |..+++ .+..++. ......++|.++.+.
T Consensus 273 ~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 273 QPTE-----TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGG 336 (343)
T ss_dssp EECS-----SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC--
T ss_pred ecCC-----CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCC
Confidence 3322 2366789999999888877 68999999 544554 3444544 245678888887653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=211.38 Aligned_cols=280 Identities=13% Similarity=0.095 Sum_probs=194.9
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc---ceeEEEEcCCCCEEEEecCC---------CeEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN---AILDLHWTTDGSQIISASPD---------KTLRA 126 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~i~i 126 (347)
.+.+++|+|+|+++++ +.||+|++|+..+. +....+.+|.. .|.+++|+|||++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4678899999998876 78999999999643 33345566654 49999999999999998764 78889
Q ss_pred EECCCCceeeeee---ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CC-----------------
Q 019006 127 WDVETGKQIKKMA---EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KY----------------- 185 (347)
Q Consensus 127 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~----------------- 185 (347)
||+.+++. ..+. .+...+....+++++..+ +.++. +.|++||+.++........ ..
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~l-a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQL-IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCE-EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEE-EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 99998765 2332 233346677888887654 44544 7899999988766554432 12
Q ss_pred -ceEEEEEcCCCCeEEEEecCC----------------------------------cEEEEeCCCCceEEEecCC-----
Q 019006 186 -QITAVSFSDASDKIYTGGIDN----------------------------------DVKVWDLRKGEVSMTLQGH----- 225 (347)
Q Consensus 186 -~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~----- 225 (347)
.+..+.|+|+++.|+.++.++ .|++||+.+++....+..+
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 237899999999999887543 7999999888755555544
Q ss_pred -CCceeEEEECCCCCEEEEEcC----CCcEEEEeCCCCCCcCceeEEEeccccccccc-eEEEEECCCCCEEEE--eeCC
Q 019006 226 -QDMITGMSLSPDGSYLLTNGM----DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN-LLKCGWSPDGSKVTA--GSSD 297 (347)
Q Consensus 226 -~~~i~~v~~~~~~~~l~t~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~s--gs~d 297 (347)
...+..++|+|||+++++... +..|.+||+... .+...+..+....... ...++|+|||+.|+. +..+
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 557889999999998876642 357999998743 2333332221111000 126789999997775 4566
Q ss_pred C------eEEEEe-CCCce--eeEEecCCccCeee-EEEcCCCCEEEEecCC---CcEEeecC
Q 019006 298 R------MVYIWD-TTSRR--ILYKLPGHTGSVNE-SVFHATEPVIGSCSSD---KQIYLGEI 347 (347)
Q Consensus 298 g------~i~vwd-~~~~~--~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~D---~~i~i~~~ 347 (347)
+ .|++|| ...++ ....+..+...+.. ++|+|+++.|+..+.+ +.++||++
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 7 577888 34444 14455544444554 6999999998866655 77888863
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=214.27 Aligned_cols=279 Identities=13% Similarity=0.103 Sum_probs=216.3
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..+.+|...+.++.|+++ .++++++.|+.+.+|.+.........+..|. .+...+|+|+|++|+.+ .++.|.+||+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~ 273 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD 273 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence 345789999999999988 7778888899999998753333344555555 46677999999999887 58999999985
Q ss_pred CCceeeeeec-----------cCcceeEeecC-CCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-ceEEEEEcCCCC
Q 019006 131 TGKQIKKMAE-----------HNSFVNSCCPS-RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-QITAVSFSDASD 197 (347)
Q Consensus 131 ~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~ 197 (347)
..+ +..+.. +...+..+.++ +++..++ +++ ++.+.+|++..+.......+.. .+..+.|+ +++
T Consensus 274 ~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la-~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 274 TEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA-FVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp TCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE-EEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred ceE-eeeeccCcccccccccccccccceeeecCCCCCEEE-EEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence 433 334433 23357778888 7776544 444 7899999998776554444445 78899999 999
Q ss_pred eEEEEecCCcEE-EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 198 KIYTGGIDNDVK-VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 198 ~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
.++.++.++.+. +||+..++.. .+.+|...+..++|+|+|++|++++.++.|++||+... ........+ .
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg----~~~~~~~~~----~ 420 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----KPTVIERSR----E 420 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECS----S
T ss_pred eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC----ceEEeccCC----C
Confidence 999888888888 9998876644 34477788999999999999999999999999999743 333334343 2
Q ss_pred cceEEEEECCCCCEEEEeeCCC----------eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 277 KNLLKCGWSPDGSKVTAGSSDR----------MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sgs~dg----------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
..+..++|+|||++|++++.++ .|++||+.+++ +..+..|...+..++|+|+++.|++++.++...+|+
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 4567889999999999887654 89999999887 667888988899999999999999999887776665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=181.97 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=194.4
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEe-Cccc-ceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccC----
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKN-AILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHN---- 142 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 142 (347)
++|++++.++.|++||.... +....+. ++.. .+..++|+|+++++ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 47899999999999998643 3333443 2222 47889999999866 556678999999999988776654321
Q ss_pred -cceeEeecCCCCCCEEEEEc------------CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 143 -SFVNSCCPSRRGPPLVVSGS------------DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 143 -~~v~~~~~~~~~~~~~~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
..+..+.+++++. .++++. .++.|.+||+.+++.+..+.....+..++|+|++++++++ ++.|+
T Consensus 81 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEE
Confidence 1345567777665 445453 5799999999888777776666677889999999988887 68899
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC------------------------cEEEEeCCCCCCcCcee
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC------------------------KLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~------------------------~i~~wd~~~~~~~~~~~ 265 (347)
+||+.+++....+..+.. ...+.|+|++++++..+.++ .|.+||+...+.. .
T Consensus 158 ~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~ 233 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---M 233 (337)
T ss_dssp EEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---E
T ss_pred EEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---E
Confidence 999999987777664431 12347899988776554332 3688998753221 1
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
..+..+ ...+..++|+|||++|+++ ++.|++||+.+++.+..+..+ ..+..++|+|+++.|++++.|+.|++|
T Consensus 234 ~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 234 REVRIM----DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEC----SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred eecCCC----CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 112111 2356789999999999988 789999999999888777643 467899999999999988999999999
Q ss_pred cC
Q 019006 346 EI 347 (347)
Q Consensus 346 ~~ 347 (347)
|+
T Consensus 307 d~ 308 (337)
T 1pby_B 307 DA 308 (337)
T ss_dssp ET
T ss_pred EC
Confidence 85
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=204.26 Aligned_cols=272 Identities=15% Similarity=0.151 Sum_probs=193.6
Q ss_pred ccccEEEEEECCCCCeEEEeeC-CCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecC---CCeEEEEECC
Q 019006 56 HQSAVYTMKFNPAGTVIASGSH-DRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASP---DKTLRAWDVE 130 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~ 130 (347)
+..+|++++|+|||+.||+++. ||++.||++.+. ....+..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC--CcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3567999999999999999887 999999998543 334455555 68999999999 77777765 4556666543
Q ss_pred C---CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC--
Q 019006 131 T---GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-- 205 (347)
Q Consensus 131 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 205 (347)
. +... .+..... .....+++++..++++...++.+.+||+.+++......... .++.|+|+|+.+++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~-~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKP-MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCS-BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCC-ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3322222 22335555555555555555566699998776544433332 788999999999988776
Q ss_pred --CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC--cEEEEeCCCCCCcCceeEEEecccccccc----
Q 019006 206 --NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC--KLCIWDMRPYAPQNRCVKILEGHQHNFEK---- 277 (347)
Q Consensus 206 --g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---- 277 (347)
+.|++||+.+++.. .+..|...+..++|+|||++|+++..++ .|++||+.... .. .+..+......
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS----VE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC----EE-ECCCSCSHHHHHCCS
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc----EE-EccCCCcChhhhhhc
Confidence 77999999887754 6677888899999999999999888888 89999987432 22 33333221111
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc---EEeec
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ---IYLGE 346 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~---i~i~~ 346 (347)
......|+|||.++++++.||.+++|++ ++.+. .+.+.+..++|+ +++++++++.+.+ +++++
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 1122339999999999999999999999 65543 345678899999 9999998888744 66665
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=208.00 Aligned_cols=291 Identities=11% Similarity=0.073 Sum_probs=208.1
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCC------CcEEEEeccCCCeeeEEEeCcccce-------eEEEEcCCCCEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHD------RDIFLWHVHGDCKNFMVLKGHKNAI-------LDLHWTTDGSQII 116 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d------~~v~~w~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~ 116 (347)
...+.+|...+.+++|||||+.||.++.+ ..|++|++.+. ....+..|...+ ..++|+|||+.++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG--EIKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT--EEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC--CeEEcccCCCcccccccccccccCCCCCEEEE
Confidence 35677899999999999999999988653 37899998643 356678888888 8999999999777
Q ss_pred EecCC------CeEEEEECCCCceeeee-------------------------------------------------ecc
Q 019006 117 SASPD------KTLRAWDVETGKQIKKM-------------------------------------------------AEH 141 (347)
Q Consensus 117 s~~~d------g~i~iwd~~~~~~~~~~-------------------------------------------------~~~ 141 (347)
+++.+ ..|.+|++.+++..... ..|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77754 35777887665432111 111
Q ss_pred CcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE
Q 019006 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 142 ~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 220 (347)
...+....++++ .++++++.++++++|.+.. +.....+.....+...+|+|+++.++.+ .++.|++||+.... +.
T Consensus 203 ~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~ 278 (1045)
T 1k32_A 203 STHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IE 278 (1045)
T ss_dssp SSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EE
T ss_pred CCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceE-ee
Confidence 222223333332 4667778889999997653 3333444443456677999999988887 58899999985443 33
Q ss_pred EecC-----------CCCceeEEEEC-CCCCEEEEEcCCCcEEEEeCCCCCCc-----Cc--------------------
Q 019006 221 TLQG-----------HQDMITGMSLS-PDGSYLLTNGMDCKLCIWDMRPYAPQ-----NR-------------------- 263 (347)
Q Consensus 221 ~~~~-----------~~~~i~~v~~~-~~~~~l~t~~~d~~i~~wd~~~~~~~-----~~-------------------- 263 (347)
.+.. |...+.+++|+ |+|++|++++ ++.+.+|++...... ..
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~ 357 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 357 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETT
T ss_pred eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECC
Confidence 5544 23468999999 9999998887 778888887532100 00
Q ss_pred -eeE-EEeccc------cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 264 -CVK-ILEGHQ------HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 264 -~~~-~~~~~~------~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
.+. .+.... ......+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+..++|+|++++|++
T Consensus 358 ~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred CceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence 000 111000 011245778999999999999999999999999999888777789999999999999999998
Q ss_pred ecCCC----------cEEeecC
Q 019006 336 CSSDK----------QIYLGEI 347 (347)
Q Consensus 336 ~s~D~----------~i~i~~~ 347 (347)
++.++ .|++||+
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEET
T ss_pred EecCccccccCCCCCeEEEEEC
Confidence 88754 8999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=200.30 Aligned_cols=275 Identities=11% Similarity=0.176 Sum_probs=196.6
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC-----C
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET-----G 132 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~ 132 (347)
..|.+++|+|+ ..++.+ .++.+++|++.+. ....+..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999999 555544 3599999998643 334455677788999999999999985 689999999988 7
Q ss_pred ceeeeeeccCcc--------------eeEeecCCCCCCEEEEEc---------------------------------CCC
Q 019006 133 KQIKKMAEHNSF--------------VNSCCPSRRGPPLVVSGS---------------------------------DDG 165 (347)
Q Consensus 133 ~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~s~~---------------------------------~d~ 165 (347)
+.......+... +..+.+++++. .+++++ .+.
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 654433322221 35677888765 455554 446
Q ss_pred ceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCceEEEec--CCC---CceeEE
Q 019006 166 TAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIYTGGIDN-----DVKVWDLRKGEVSMTLQ--GHQ---DMITGM 232 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~---~~i~~v 232 (347)
.|++||+.++...... .+...+..++|+|+++.+++++.++ .|++||+.+++....+. .+. ..+..+
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 7999999877654433 2345689999999999999887765 89999999883333322 122 234678
Q ss_pred EECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE-EEECCCCCEEEEee-CCC----eEEEEe
Q 019006 233 SLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK-CGWSPDGSKVTAGS-SDR----MVYIWD 304 (347)
Q Consensus 233 ~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~l~sgs-~dg----~i~vwd 304 (347)
+|+| +|+++++++.|+.+++|++.. .......+..+ ...+.. ++|+|+|+.|+.++ .++ .|+.||
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~---~~~~~~~l~~~----~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDT---TGRLIRQVTKG----EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEET---TSCEEEECCCS----SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred eeecCCCCEEEEEEccCCccEEEEEEC---CCCEEEecCCC----CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 9999 999999999999999998752 12333444333 223544 78999999886654 444 678888
Q ss_pred CCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC----CcEEeecC
Q 019006 305 TTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD----KQIYLGEI 347 (347)
Q Consensus 305 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~i~i~~~ 347 (347)
..+++ +..+. |...+..++|+|+++.++.+..+ +.|++||+
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 87765 34444 67779999999999988876544 56999874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-23 Score=178.81 Aligned_cols=269 Identities=12% Similarity=0.152 Sum_probs=182.1
Q ss_pred CCCcEEEEeccCCCeee--EEEeCcccceeEEEEcCCCCEEEEecC---CCeEEEEECCCCc--eeeeeeccCcceeEee
Q 019006 77 HDRDIFLWHVHGDCKNF--MVLKGHKNAILDLHWTTDGSQIISASP---DKTLRAWDVETGK--QIKKMAEHNSFVNSCC 149 (347)
Q Consensus 77 ~d~~v~~w~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~ 149 (347)
.++.|++|.++.....+ .....+...+..++|+|+|+ |++++. ++.|++|++.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 45678888876432222 22334556778899999998 665544 6899999997665 3344444556666778
Q ss_pred cCCCCCCEEEEEcCCCceEEEeCCCCCc---eeecCC----------CCceEEEEEcCCCCeEEEEecCCcEEEEeCC-C
Q 019006 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGA---IQTFPD----------KYQITAVSFSDASDKIYTGGIDNDVKVWDLR-K 215 (347)
Q Consensus 150 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~ 215 (347)
+++++..++++...++.+.+||+..... +..+.. ...+.+++|+|+++.+++...++.|++||+. .
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 8887765555555889999999963322 222221 1247889999999955566678899999998 4
Q ss_pred CceEE--EecCC-CCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCCcCceeEEEecccccc--ccceEEEEECCCCC
Q 019006 216 GEVSM--TLQGH-QDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF--EKNLLKCGWSPDGS 289 (347)
Q Consensus 216 ~~~~~--~~~~~-~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~ 289 (347)
++... .+..+ ...+..++|+|+|+++++ ...++.+.+|++............+....... ...+..++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 54322 22222 235778999999996665 56678999999874211112222222221110 13477899999999
Q ss_pred EE-EEeeCCCeEEEEeCCC---ceeeEEecCCccCeeeEEEcCCCCEEEEecC-CCcEEeec
Q 019006 290 KV-TAGSSDRMVYIWDTTS---RRILYKLPGHTGSVNESVFHATEPVIGSCSS-DKQIYLGE 346 (347)
Q Consensus 290 ~l-~sgs~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~i~i~~ 346 (347)
+| ++...++.|.+|++.. .+.+..+..|...+..++|+|++++|+.++. ++.|.+|+
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 88 4566789999999873 3556677777778999999999998887775 48899994
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=201.26 Aligned_cols=275 Identities=10% Similarity=0.087 Sum_probs=199.2
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
.|.+++|+|||+.|++++. +.|++|++.+.. .....+..|...+..++|+|||++|+.++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 3789999999999999887 999999996531 02334667788899999999999999887 46999999988765543
Q ss_pred eeccCcc----------------eeEeecCCCCCCEEEEEcCCC---------------------------------ceE
Q 019006 138 MAEHNSF----------------VNSCCPSRRGPPLVVSGSDDG---------------------------------TAK 168 (347)
Q Consensus 138 ~~~~~~~----------------v~~~~~~~~~~~~~~s~~~d~---------------------------------~i~ 168 (347)
...+... +..+.+++++..+ ++++.|+ .|.
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEE-EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 3322221 3557788887655 4444443 788
Q ss_pred EEeCCC-CCceeec---CCCCceEEEEEcCCCCeEEEEec-----CCcEEEEeCCCCceEEEecCCCC----ceeEEEEC
Q 019006 169 LWDMRQ-RGAIQTF---PDKYQITAVSFSDASDKIYTGGI-----DNDVKVWDLRKGEVSMTLQGHQD----MITGMSLS 235 (347)
Q Consensus 169 iwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~v~~~ 235 (347)
+||+.+ ++..... .+...+..++| |+++.|+.++. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 899987 7654433 24457899999 99999987654 56799999999887666655443 45689999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE-EECCCCCEEEE-eeCCC--eEEEEeCCC-cee
Q 019006 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC-GWSPDGSKVTA-GSSDR--MVYIWDTTS-RRI 310 (347)
Q Consensus 236 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~s-gs~dg--~i~vwd~~~-~~~ 310 (347)
|+|+++++++.|+.++||.+... .. ...+..+ ...+..+ .|+|+|+.|+. ++.++ .++||++.. +..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~---~~-~~~l~~~----~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~ 417 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSK---GK-AAALTHG----NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ 417 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSS---SC-EEESCCS----SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred CCCeEEEEecCCCccEEEEEcCC---CC-eeeeeec----ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence 99999999999998888876521 12 3334333 2345565 59999998764 55555 899998864 555
Q ss_pred eEEecCCccCeeeEEEcCCCCEEEEecCC----CcEEeec
Q 019006 311 LYKLPGHTGSVNESVFHATEPVIGSCSSD----KQIYLGE 346 (347)
Q Consensus 311 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~i~i~~ 346 (347)
+.++.. ...+..++|+|+++.|+....+ ..+++++
T Consensus 418 ~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 418 PQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp CEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred eeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 666765 6678899999999988866543 4566654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-22 Score=172.42 Aligned_cols=273 Identities=10% Similarity=0.105 Sum_probs=188.3
Q ss_pred EecCccccEEEEEECCCCCeEEEeeC-CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC---eEEEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGSH-DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK---TLRAW 127 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~i~iw 127 (347)
.+..+...+ .++|+|+|+.|++++. ++.|++|+..........+..+.....+++|+|++++|+++..++ .|.+|
T Consensus 35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 334455566 9999999996665555 899999998654322445555655555599999999999655553 89999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc-eEEEeCCCCCce-----eecCCCCceEEEEEcCCCCeEEE
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT-AKLWDMRQRGAI-----QTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~-i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
|+.+++.+..+..+ .....+++++++..++++...++. +.+|++.....+ ..+........++|+|+++++++
T Consensus 114 d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp ETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred ECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 99998877766543 345678888888778888788788 999998754433 22344456889999999997665
Q ss_pred E-ecCCcEEEEeCCCCce---EEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccc---c
Q 019006 202 G-GIDNDVKVWDLRKGEV---SMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQ---H 273 (347)
Q Consensus 202 ~-~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~---~ 273 (347)
+ ..++.|++||+.+++. ...+..+ ..+..++|+|+|++++.++ .++.|.+||+...+. ..+..+.... .
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL--SFVKSFGHGLLIDP 269 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE--EEEEEEECCCCCCC
T ss_pred EeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce--eeecccccccccCC
Confidence 5 4688999999998887 6666644 5578899999999776654 577899999874321 1122222210 0
Q ss_pred ccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 274 NFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
........++|+|||++|++++ .++.|++||+.....- .+.+.+..-....++|+.
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG-YVAGIEANGGIAICHPDK 326 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE-ECTTCCCBSCEEECCCC-
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc-ceecccccCCeEEECCcc
Confidence 1111224578999999886555 5679999999876543 344444333344555554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-22 Score=174.75 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=186.8
Q ss_pred ccceeEEEEcCCCCEEEEecC-------CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 100 KNAILDLHWTTDGSQIISASP-------DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
...+..++|+|+++++++++. ++.|.+||..+++.+..+... .....+.+++++..++++...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 346788999999998888774 568999999999887776543 334556777777667788888899999999
Q ss_pred CCCCceeecCCCC----------ceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCE
Q 019006 173 RQRGAIQTFPDKY----------QITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSY 240 (347)
Q Consensus 173 ~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 240 (347)
.+++.+..+.... .+..+.|+|+++.+++++ .++.|.+||..+++....+..+...+.+++|+|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 9888766654321 268899999999888766 4788999999999888888755566889999999999
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCCCceeeEEecCCcc
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~~~~~~~~~~~h~~ 319 (347)
+++++.++.|.+||+... .....+..........+..++|+|+|++|++++. ++.|++||..+++.+..+..+.
T Consensus 199 l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADN----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTT----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEcCCCeEEEEECCCC----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999999999999998743 3333333211112345678899999998776665 5899999999999888777544
Q ss_pred CeeeEEEcCCCCE-EEEecCCCcEEeecC
Q 019006 320 SVNESVFHATEPV-IGSCSSDKQIYLGEI 347 (347)
Q Consensus 320 ~v~~~~~~~~~~~-l~s~s~D~~i~i~~~ 347 (347)
...++|+|+++. +++...++.|.+||+
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 367999999984 555557999999984
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=176.54 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=173.2
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCc-ccceeEEEEcCCCCEEEEec--CCCeEEEE
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGH-KNAILDLHWTTDGSQIISAS--PDKTLRAW 127 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~dg~i~iw 127 (347)
..+..|...|.+++|+|+|++|++++ ++.|++|++.+.........+| ...+.+++|+|++++|++++ .++..+||
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 34567889999999999999999987 7899999996512333334455 36789999999999999998 33455555
Q ss_pred E--CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC--CCCceeecCCCCceEEEEEcCCCCeEEEEe
Q 019006 128 D--VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR--QRGAIQTFPDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 128 d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
. ..+++ ...+..+. .+..+.+++++..++++++.++.+++|++. ++.......+...+.++.|+|+++.++.++
T Consensus 114 ~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 114 LLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence 4 44443 33333333 366677888876666688899999999853 344333344556789999999999887665
Q ss_pred -cCCcEEEEeCC-CCceEEEecCCCCceeEEEECCCCCEEEEEcCC-----------CcEEEEeCCCCCCcCceeEEEec
Q 019006 204 -IDNDVKVWDLR-KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD-----------CKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 204 -~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
.++.+++|++. .+.....+..|...+..++|+|++++|+.++.+ +.|.+||+..... ..+..+..
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~ 269 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV--ETLFDLFG 269 (297)
T ss_dssp CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC--EEEEEEEE
T ss_pred cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc--eeeeccCC
Confidence 58899999876 455566777777789999999999999988765 5699999875321 22222223
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCC
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
+ ...+..++|+|+|++|++++.+.
T Consensus 270 ~----~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 270 G----QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp S----TTTSCSCCBCTTSSEEEEEEECC
T ss_pred C----CcccccceECCCCCEEEEEEecc
Confidence 3 23566788999999998887653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=172.09 Aligned_cols=264 Identities=10% Similarity=0.096 Sum_probs=174.9
Q ss_pred eCCCcEEEEeccCCCeee--EEEeCcccceeEEEEcCCCCEEEEecCC----CeEEEEECCC--Cce--eeeeeccCcce
Q 019006 76 SHDRDIFLWHVHGDCKNF--MVLKGHKNAILDLHWTTDGSQIISASPD----KTLRAWDVET--GKQ--IKKMAEHNSFV 145 (347)
Q Consensus 76 ~~d~~v~~w~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v 145 (347)
+.++.|++|.++.....+ .... +......++|+|++++|++++.+ +.+.+|++.. ++. +.....+....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 346789999875332221 1122 66778889999999999998876 7999998865 332 22333233344
Q ss_pred eEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec------CC---------CCceEEEEEcCCCCeEEEEe-cCCcEE
Q 019006 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF------PD---------KYQITAVSFSDASDKIYTGG-IDNDVK 209 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~------~~---------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 209 (347)
..+++ ++..++++...++.+.+|++.....+... .. ...+.+++|+|+++++++++ .++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 44444 44445555667899999999754433211 11 12357899999999776655 578999
Q ss_pred EEeCCCCc-------e------EEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEecccccc
Q 019006 210 VWDLRKGE-------V------SMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275 (347)
Q Consensus 210 iwd~~~~~-------~------~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 275 (347)
+|++.... . ......+......++|+|+|+++++++ .++.|.+||+.... ......+......
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~--~~~~~~~~~~~~~- 257 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM--LDEIQTVAADTVN- 257 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE--EEEEEEEESCSSC-
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc--eEEeEEEecCCCC-
Confidence 99886433 1 111222344578899999999887776 68999999987321 1112222221111
Q ss_pred ccceEEEEECCCCCEEEEeeC--CCeEEEEeCC--Cce--eeEEecCCccCeeeEEEcCCCCEEEEec-CCCcEEeec
Q 019006 276 EKNLLKCGWSPDGSKVTAGSS--DRMVYIWDTT--SRR--ILYKLPGHTGSVNESVFHATEPVIGSCS-SDKQIYLGE 346 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~--dg~i~vwd~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~ 346 (347)
......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+..++|+|++++|+.++ .++.|.+|+
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 123578899999999977665 4899999985 344 4455555 55788999999999888777 678899864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-22 Score=172.62 Aligned_cols=261 Identities=12% Similarity=0.069 Sum_probs=183.0
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeee
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
.+++++++.++++++.++.|++||..+. +....+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3467788899999999999999998643 3444444332 2578899999998664 55678999999999988776665
Q ss_pred ccC------cceeEeecCCCCCCEEEEEcC------------CCceEEEeCCCCC---ceeecCCCCceEEEEEcCCCCe
Q 019006 140 EHN------SFVNSCCPSRRGPPLVVSGSD------------DGTAKLWDMRQRG---AIQTFPDKYQITAVSFSDASDK 198 (347)
Q Consensus 140 ~~~------~~v~~~~~~~~~~~~~~s~~~------------d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~ 198 (347)
... ..+..+.+++++. ++++++. ++.|.+||+.+++ .+..+.....+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 322 2255667777765 4555554 4899999998743 333444445688899999999
Q ss_pred EEEEecCCcEEEEeCCCCceEEEecCCCC------------------------ceeEEEECCCCCE-----------EEE
Q 019006 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQD------------------------MITGMSLSPDGSY-----------LLT 243 (347)
Q Consensus 199 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~v~~~~~~~~-----------l~t 243 (347)
+++++. .|++||+.+++....+..+.. ....+++++++.. +..
T Consensus 161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 666543 499999998887766653320 2344666654421 112
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCee
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVN 322 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~ 322 (347)
...++.+.+|++.. ....+..++|+| +|++|+++ ++.|++||+.+++.+..+.. ...+.
T Consensus 239 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 239 DLKTGKTHTQEFAD-----------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYY 298 (349)
T ss_dssp ETTTCCEEEEEEEE-----------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCC
T ss_pred eccCCcEEeccccc-----------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCcc
Confidence 22334444444321 123567889999 99999988 88999999999998877764 34578
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.++|+|+++.|++++.|+.|++||+
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEET
T ss_pred ceEECCCCCEEEEecCCCeEEEEec
Confidence 9999999998888889999999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=194.46 Aligned_cols=275 Identities=12% Similarity=0.075 Sum_probs=191.0
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-----------------cceeEEEEcCCCCEEEEecCCC
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-----------------NAILDLHWTTDGSQIISASPDK 122 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l~s~~~dg 122 (347)
+..+.|. |..+++++.|+ | +||+.+.......+..|. ..|.+++|+|+ ++++.+ .|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4456777 67777888888 8 999864322001222332 46999999999 666555 459
Q ss_pred eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-----CCceeecCCCCc-----------
Q 019006 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-----RGAIQTFPDKYQ----------- 186 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~----------- 186 (347)
.+++||+.+++.. .+..+...+..+.+++++. .++++ .++.|++||+.+ +...........
T Consensus 102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 102 GLVGFDMLARKVT-YLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp EEEEEETTTTEEE-EEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred EEEEEECCCCceE-EccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 9999999887654 3444555666778888775 45553 679999999987 665554333222
Q ss_pred ----eEEEEEcCCCCeEEEEe---------------------------------cCCcEEEEeCCCCceEEEec--CCCC
Q 019006 187 ----ITAVSFSDASDKIYTGG---------------------------------IDNDVKVWDLRKGEVSMTLQ--GHQD 227 (347)
Q Consensus 187 ----v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~ 227 (347)
+.++.|+|+++.|++++ .+..|++||+.+++...... .|..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 47899999999999887 34679999999887544332 4667
Q ss_pred ceeEEEECCCCCEEEEEcCCC-----cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC--CCCEEEEeeCCCeE
Q 019006 228 MITGMSLSPDGSYLLTNGMDC-----KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP--DGSKVTAGSSDRMV 300 (347)
Q Consensus 228 ~i~~v~~~~~~~~l~t~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sgs~dg~i 300 (347)
.+..++|+|+|++|++++.++ .|.+||+.... ................+..++|+| ||++|++++.||.+
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR---FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC---EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc---eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 799999999999999887665 89999987431 111112111111111235678999 99999999999999
Q ss_pred EEEeCC-CceeeEEecCCccCeee-EEEcCCCCEEEEecC-CC----cEEeec
Q 019006 301 YIWDTT-SRRILYKLPGHTGSVNE-SVFHATEPVIGSCSS-DK----QIYLGE 346 (347)
Q Consensus 301 ~vwd~~-~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~-D~----~i~i~~ 346 (347)
++|++. ++..+..+..|...+.. ++|+|+++.|+.++. ++ .|+.+|
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 999876 56777788888888877 799999987765554 44 555554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-21 Score=169.91 Aligned_cols=265 Identities=11% Similarity=0.089 Sum_probs=181.4
Q ss_pred ccccEEEEEECCCCCeEEEeeCC----CcEEEEeccCC-C--eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEE
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHD----RDIFLWHVHGD-C--KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAW 127 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d----~~v~~w~~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iw 127 (347)
|...+..++|+|+|++|++++.+ +.|.+|++... . ..+.....+......+++ ++++|++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999998886 79999998653 2 222233445556777787 788777665 67899999
Q ss_pred ECCCCceeeeee---cc-----------CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--------------ee
Q 019006 128 DVETGKQIKKMA---EH-----------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--------------IQ 179 (347)
Q Consensus 128 d~~~~~~~~~~~---~~-----------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--------------~~ 179 (347)
++.....+..+. .+ ...+..+++++++..++++...++.+.+|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543322211 11 122355788888766777777789999998875431 12
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceE--EEe---cCCCCceeEEEECCCCCEEEEEcCC--CcEE
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVS--MTL---QGHQDMITGMSLSPDGSYLLTNGMD--CKLC 251 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~---~~~~~~i~~v~~~~~~~~l~t~~~d--~~i~ 251 (347)
..........++|+|+++++++++ .++.|.+||+.+++.. ..+ ..+......++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234455678999999999888777 6899999999876532 222 2233446799999999998776654 8999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee-CCCeEEEE--eCCCceeeEEe-cCCccCeeeEEEc
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIW--DTTSRRILYKL-PGHTGSVNESVFH 327 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vw--d~~~~~~~~~~-~~h~~~v~~~~~~ 327 (347)
+|++.........+..+.. ...+..++|+|||++|++++ .++.|.+| |..++++.... ..+...+.+++|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9998632212222222222 13466889999999998887 67899996 55567665432 2244578888885
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-21 Score=168.99 Aligned_cols=273 Identities=11% Similarity=0.154 Sum_probs=179.6
Q ss_pred EEEeeCC--CcEEEEeccCCCeeeEEEe----CcccceeEEEEcCCCCEEEEecCCCeEEEEECC-CCceeeeeecc-Cc
Q 019006 72 IASGSHD--RDIFLWHVHGDCKNFMVLK----GHKNAILDLHWTTDGSQIISASPDKTLRAWDVE-TGKQIKKMAEH-NS 143 (347)
Q Consensus 72 l~s~~~d--~~v~~w~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~ 143 (347)
|++|+.. +.|++|+++.....+..+. +....+..++|+|++++|++++.+ .|.+|++. +++........ ..
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4455542 4577777643222222111 233467899999999999998888 99999987 66654322211 12
Q ss_pred ceeEeecCCCCCC-EEEEEc-------------CCCceEEEeCCC-CCceeec-----CCCCceEEEEEcCCCCeEEEEe
Q 019006 144 FVNSCCPSRRGPP-LVVSGS-------------DDGTAKLWDMRQ-RGAIQTF-----PDKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 144 ~v~~~~~~~~~~~-~~~s~~-------------~d~~i~iwd~~~-~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~ 203 (347)
....+++++++.. ++++++ .++++.+|++.. +.....+ .....+.+++|+|++++++++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 2334666776653 344543 689999999974 4433222 2345789999999999888765
Q ss_pred c-CCcEEEEeCC-CCceE--EEec--CCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCcee---EEEecccc
Q 019006 204 I-DNDVKVWDLR-KGEVS--MTLQ--GHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCV---KILEGHQH 273 (347)
Q Consensus 204 ~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~---~~~~~~~~ 273 (347)
. ++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.+.+|++.... +... ..+.....
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~--g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT--HMPVYTHHSFPLIPP 241 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEESSCT
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC--CcEEEccceEEcCCC
Confidence 3 6789999998 66543 2333 23456899999999999887764 6899999875311 1111 11211111
Q ss_pred cc---cc------ceEEEE-ECCCCCEEEEeeCC-C-----eEEEEeCC-CceeeE---EecCCccCeeeEEEcC---CC
Q 019006 274 NF---EK------NLLKCG-WSPDGSKVTAGSSD-R-----MVYIWDTT-SRRILY---KLPGHTGSVNESVFHA---TE 330 (347)
Q Consensus 274 ~~---~~------~~~~~~-~s~~g~~l~sgs~d-g-----~i~vwd~~-~~~~~~---~~~~h~~~v~~~~~~~---~~ 330 (347)
.. .. .+..++ |+|||++|+++..+ + .|.+|++. ++++.. .+..+...+..++|+| ++
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 11 11 477899 99999998876643 2 89999986 566543 2445666678899999 89
Q ss_pred CEEEEecCC-CcEEeecC
Q 019006 331 PVIGSCSSD-KQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D-~~i~i~~~ 347 (347)
++|+.++.+ ++|.+|++
T Consensus 322 ~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEcCCCeEEEEEE
Confidence 999988875 89999974
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=177.15 Aligned_cols=290 Identities=12% Similarity=0.096 Sum_probs=191.5
Q ss_pred eeEecCccccEEE-----EEECCCCCeEEEeeC-CCc--EEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC
Q 019006 50 IMLLTGHQSAVYT-----MKFNPAGTVIASGSH-DRD--IFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD 121 (347)
Q Consensus 50 ~~~~~~h~~~V~~-----v~~~~~~~~l~s~~~-d~~--v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 121 (347)
...+..|...+.. .+|+|||+.|+.++. ++. |++|++.+. .......++...+..+.|+|||+.|+.++.+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 3455666666666 789999999988887 674 777777532 3333344555555577899999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEe--ecCCCCCCEEEE----------------------EcCCCceEEEeCCCCCc
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSC--CPSRRGPPLVVS----------------------GSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~s----------------------~~~d~~i~iwd~~~~~~ 177 (347)
+.+++||+.+++....+..+...+... ..++++ .+++. ...+..|.+||+.+++.
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 999999999987655554444433222 234444 34442 22446799999998876
Q ss_pred eeecCCCCceEEEEEcC-CCCeEEEEecC------CcEEEEeCCCCceEEEecCCC--CceeEEEECCCCCEEEEEcC-C
Q 019006 178 IQTFPDKYQITAVSFSD-ASDKIYTGGID------NDVKVWDLRKGEVSMTLQGHQ--DMITGMSLSPDGSYLLTNGM-D 247 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~v~~~~~~~~l~t~~~-d 247 (347)
.........+..+.|+| +++.++....+ ..|.++|...+.. ..+..+. ..+..+.|+|+|+.|+..+. +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 55555556788999999 99988776653 3788888765543 3333333 25778899999997765443 1
Q ss_pred ----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe---------eCCCeEEEEeCCCceeeEEe
Q 019006 248 ----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG---------SSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg---------s~dg~i~vwd~~~~~~~~~~ 314 (347)
..|.+||+...+. +.+..+.++... ........|+|||+.|+.. ..+..|++||+.+++. .++
T Consensus 260 ~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 335 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN--RQLTSMPACSHL-MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRV 335 (388)
T ss_dssp TCCCEEEEEECTTTCCE--EEEEEECCEEEE-EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEE
T ss_pred CCCcceEEEEecCCCce--EEEEcCCCceee-eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEe
Confidence 2399999875321 222222221000 0001112689999988854 4567899999998765 456
Q ss_pred cCCcc-----------CeeeEEEcCCCCEEEEec-CCCcEEeec
Q 019006 315 PGHTG-----------SVNESVFHATEPVIGSCS-SDKQIYLGE 346 (347)
Q Consensus 315 ~~h~~-----------~v~~~~~~~~~~~l~s~s-~D~~i~i~~ 346 (347)
..|.. .+..++|+|+++.|+.++ .++...||.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 66665 578899999999887665 467666653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=190.34 Aligned_cols=281 Identities=11% Similarity=0.068 Sum_probs=188.5
Q ss_pred eeEecCccc---cEEEEEECCCCCeEEEeeCC---------CcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEE
Q 019006 50 IMLLTGHQS---AVYTMKFNPAGTVIASGSHD---------RDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQII 116 (347)
Q Consensus 50 ~~~~~~h~~---~V~~v~~~~~~~~l~s~~~d---------~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~ 116 (347)
...+.+|.. .|.+++|+|||+.||+++.+ +.+++|++.+... .+....+|...+..++|+|||++|+
T Consensus 50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEE
Confidence 345666664 49999999999999999875 6788999864322 1112234555588999999999999
Q ss_pred EecCCCeEEEEECCCCceeeeeeccCcce------------------eEeecCCCCCCEEEEEcCCC-------------
Q 019006 117 SASPDKTLRAWDVETGKQIKKMAEHNSFV------------------NSCCPSRRGPPLVVSGSDDG------------- 165 (347)
Q Consensus 117 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~~~s~~~d~------------- 165 (347)
.++. +.|++||+.+++.......+...+ ..+.+++++. .|++++.++
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSS
T ss_pred EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCC
Confidence 8876 799999998887655443332222 5677888775 455554332
Q ss_pred ---------------------ceEEEeCCCCCceeecCC-------CCceEEEEEcCCCCeEEEEecC----CcEEEEeC
Q 019006 166 ---------------------TAKLWDMRQRGAIQTFPD-------KYQITAVSFSDASDKIYTGGID----NDVKVWDL 213 (347)
Q Consensus 166 ---------------------~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~ 213 (347)
.|++||+.++.....+.. ...+..++|+|+++.+++.... ..|++||+
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 789999987765444432 3468899999999988766533 57999999
Q ss_pred CCCceEEEecC-CCCce----eEEEECCCCCEEEE--EcCCC------cEEEEeCCCCCCcCceeEEEeccccccccceE
Q 019006 214 RKGEVSMTLQG-HQDMI----TGMSLSPDGSYLLT--NGMDC------KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 214 ~~~~~~~~~~~-~~~~i----~~v~~~~~~~~l~t--~~~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (347)
.+++....+.. +...+ ..++|+|+|+.|+. +..++ .|.+||+..... ..+...+... ...+.
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~----~~~~~ 362 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS-NDNIQSITSG----DWDVT 362 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS-SCCCCBSCCS----SSCEE
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC-ccceeEeecC----CeEEE
Confidence 98876655433 33333 37899999997775 45666 566777322111 0001122211 11233
Q ss_pred -EEEECCCCCEEEEeeCC---CeEEEEeCCCc--eeeEEecC---CccCeeeEEEcCCCCEEEEec
Q 019006 281 -KCGWSPDGSKVTAGSSD---RMVYIWDTTSR--RILYKLPG---HTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 281 -~~~~s~~g~~l~sgs~d---g~i~vwd~~~~--~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s 337 (347)
.++|+|||++|+..+.+ +.+++|++... .....+.. |...+..++|+|+++.++...
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 36899999999866554 78999987543 23334554 677899999999999777543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=170.20 Aligned_cols=244 Identities=12% Similarity=0.097 Sum_probs=177.6
Q ss_pred cEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEe-Cc----ccceeEEEEcCCCCEEEEec------------C
Q 019006 59 AVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLK-GH----KNAILDLHWTTDGSQIISAS------------P 120 (347)
Q Consensus 59 ~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~-~h----~~~v~~~~~~~~~~~l~s~~------------~ 120 (347)
.+..++|+|+|+.+ ++++.++.|.+|++.+. +....+. ++ ...+..++|+|++++|++++ .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 47789999999765 56667889999998643 2333333 22 23677899999999998886 5
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
++.|.+||+.+++.+..+.. ...+..+.+++++..++++ ++.|.+||+.+++....+........+.|+|++..++
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence 79999999998877766654 3345566777777655544 6889999999887766554332112336788888766
Q ss_pred EEecCC------------------------cEEEEeCCCCceE-EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeC
Q 019006 201 TGGIDN------------------------DVKVWDLRKGEVS-MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255 (347)
Q Consensus 201 ~~~~dg------------------------~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~ 255 (347)
..+..+ .|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|.+||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence 544332 4689999988764 2334455678899999999999988 789999998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT 318 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~ 318 (347)
... +....+... ..+..++|+|+|++|++++.++.|++||+.+++.+..++.+.
T Consensus 268 ~~~----~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 268 EKN----ASIKRVPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TTT----EEEEEEECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCC----cCcceecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 742 333333322 346788999999999999999999999999999888876554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-21 Score=167.33 Aligned_cols=250 Identities=11% Similarity=0.153 Sum_probs=171.6
Q ss_pred CccccEEEEEECCCCCeEEEeeC---CCcEEEEeccCCC-eeeEEEeCcccceeEEEEcCCCCEEEEec-CCCeEEEEEC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSH---DRDIFLWHVHGDC-KNFMVLKGHKNAILDLHWTTDGSQIISAS-PDKTLRAWDV 129 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~ 129 (347)
.+...+..++|+|+|+ |++++. ++.|++|++.+.. +.+..+..+...+..++|+|+|++|++++ .++.+.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4556778899999999 554443 6899999995432 23333455677889999999999888887 7899999999
Q ss_pred CC-Cc--eeeeeecc---------CcceeEeecCCCCCCEEEEEcCCCceEEEeCC-CCCcee----ecCCCCceEEEEE
Q 019006 130 ET-GK--QIKKMAEH---------NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAIQ----TFPDKYQITAVSF 192 (347)
Q Consensus 130 ~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~~----~~~~~~~v~~~~~ 192 (347)
.. +. .+..+... ...+..+++++++. ++++...++.|.+||+. .+.... ..........++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 63 32 22222211 12355678888876 88888889999999998 333221 1223346788999
Q ss_pred cCCCCeEEE-EecCCcEEEEeCCC--Cce--EEEecCCC------CceeEEEECCCCCEEE-EEcCCCcEEEEeCCCCCC
Q 019006 193 SDASDKIYT-GGIDNDVKVWDLRK--GEV--SMTLQGHQ------DMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 193 ~~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~v~~~~~~~~l~-t~~~d~~i~~wd~~~~~~ 260 (347)
+|+++++++ ...++.|++|++.. ++. ...+.... ..+..++|+|+|++|+ +...++.|.+||+....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g- 273 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG- 273 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-
Confidence 999997665 55778999999874 442 22222221 3478899999999874 55568999999986311
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeC-CCeEEEE--eCCCceee
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIW--DTTSRRIL 311 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vw--d~~~~~~~ 311 (347)
....+..+..+ ...+..++|+|||++|++++. ++.|.+| |..++++.
T Consensus 274 ~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 HLTLIQQISTE----GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEEECS----SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeEEEecC----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 11223333322 124668899999999888775 4899999 65666654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=187.06 Aligned_cols=232 Identities=12% Similarity=0.122 Sum_probs=171.7
Q ss_pred ccceeEEEEcCCCCEEEEecC-CCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcC---CCceEEEeCCC
Q 019006 100 KNAILDLHWTTDGSQIISASP-DKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSD---DGTAKLWDMRQ 174 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~ 174 (347)
..+|.+++|+|||++|++++. ||+++||++.+++. ..+..+. ..+....++++ .++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 457999999999999999887 99999999866554 4444444 56777888865 56666654 45566665433
Q ss_pred --CCceeecCCCCceEEEEEcCCCCe-EEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC----
Q 019006 175 --RGAIQTFPDKYQITAVSFSDASDK-IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD---- 247 (347)
Q Consensus 175 --~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d---- 247 (347)
......+.........+|+|+++. +++.+.++.+.+||+.+++.......+ . .+++|+|||+++++++.+
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCC
Confidence 222223333333446678888764 344444555669999888755444333 2 789999999999988776
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC--eEEEEeCCCceeeEEecCCccCeeeEE
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR--MVYIWDTTSRRILYKLPGHTGSVNESV 325 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~ 325 (347)
+.|++||+..... ..+..+ ...+..++|||||++|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 175 ~~i~~~d~~~g~~-----~~l~~~----~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 175 VSLFTSNLSSGGL-----RVFDSG----EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp EEEEEEETTTCCC-----EEECCS----SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred eEEEEEcCCCCCc-----eEeecC----CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 7899999874321 233333 24568899999999999888888 8999999999887 8888888888888
Q ss_pred --------EcCCCCEEEEecCCCcEEeecC
Q 019006 326 --------FHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 326 --------~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+|++.++++++.|++++||++
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999975
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-22 Score=177.74 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=153.9
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC---------CeeeE-----EEeCcccceeEEEEcCCCCEEE----Ee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD---------CKNFM-----VLKGHKNAILDLHWTTDGSQII----SA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---------~~~~~-----~~~~h~~~v~~~~~~~~~~~l~----s~ 118 (347)
...+..+++++++.++++++.|+ +++|+.... ..... ....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578889999999999999998 888875310 00111 1123566799999999999999 88
Q ss_pred cCCCeEEEEECCCC--------ce---eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCCCCc
Q 019006 119 SPDKTLRAWDVETG--------KQ---IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQ 186 (347)
Q Consensus 119 ~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~ 186 (347)
+.|+.|++||+.++ +. ...+..|...+..+++++....++++++.||+|++||++++..... ..+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 99999999998654 11 3445568889999999988778999999999999999998754433 345668
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-------CceeEEEECCCCCEEEEEc-CCC------cEEE
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-------DMITGMSLSPDGSYLLTNG-MDC------KLCI 252 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~v~~~~~~~~l~t~~-~d~------~i~~ 252 (347)
+.+++|+|++.+|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 55555554432 3789999999887775533 333 3899
Q ss_pred EeCCCC
Q 019006 253 WDMRPY 258 (347)
Q Consensus 253 wd~~~~ 258 (347)
||++..
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999854
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=189.81 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=183.8
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc---ceeEEEEcCCCCEEEEecC---------CCeEEEEEC
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN---AILDLHWTTDGSQIISASP---------DKTLRAWDV 129 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------dg~i~iwd~ 129 (347)
.++|+|+|++++++ .|++|++|+..+. .....+.+|.. .+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 67999999766554 6999999998653 23334444443 3899999999999998876 789999999
Q ss_pred CCCcee--eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--C-----------------ceE
Q 019006 130 ETGKQI--KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--Y-----------------QIT 188 (347)
Q Consensus 130 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~-----------------~v~ 188 (347)
.+++.+ ..+ ...+..+.++|++..+ +.+ .++.|++||+.++...+..... . ...
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~l-a~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKL-AYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCE-EEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceec---CcccccceECCCCCEE-EEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 988752 222 2346677888887654 444 3789999999877655432211 1 114
Q ss_pred EEEEcCCCCeEEEEecCC----------------------------------cEEEEeCCCCceE--EE------ecCCC
Q 019006 189 AVSFSDASDKIYTGGIDN----------------------------------DVKVWDLRKGEVS--MT------LQGHQ 226 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~--~~------~~~~~ 226 (347)
+++|+|+++.|+.++.|. .|++||+.+++.. .. +.+|.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999887652 7889999887642 12 33577
Q ss_pred CceeEEEECCCCCEEEEEcCC----CcEEEEe----CCCCCCcCceeEEE----eccccccccceE-----EEEECCCCC
Q 019006 227 DMITGMSLSPDGSYLLTNGMD----CKLCIWD----MRPYAPQNRCVKIL----EGHQHNFEKNLL-----KCGWSPDGS 289 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d----~~i~~wd----~~~~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~s~~g~ 289 (347)
..+..++|+||++.+++.... ..|.+|| ..... +...+ ..+. ..+. .+.|+|||+
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~----~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD----CPKTQEHIEESRT----GWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE----CCGGGEEEEECSS----SCSSSSSCCCCEECTTSS
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc----eEEEEecccccCC----ceEccccCCccEECCCCC
Confidence 789999999998777764322 2488888 54322 11112 1221 1222 567999999
Q ss_pred EEEE--eeCCC--eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC-----CcEEeec
Q 019006 290 KVTA--GSSDR--MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD-----KQIYLGE 346 (347)
Q Consensus 290 ~l~s--gs~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~i~~ 346 (347)
.|+. +..+| .|++||+.+++ ...+..+...+..+.+. +++.|+..+.+ +.+++|.
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred eEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 6654 44555 57888887766 45677677778887777 77766666554 7788775
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=175.31 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=150.3
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
..+..+++++++.++++++.|+ +++|+...... .... .. ....+... .....
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~---~~~~----------~~-----------~~~~~~~~---~~~~~ 88 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLI---QNKP----------GD-----------DPNKIVDK---VQGLL 88 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCC---CCCT----------TC-----------CTTCEEEC---CCCEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhh---hccc----------cc-----------Cccccccc---Ccccc
Confidence 4578899999999999999888 88887532110 0000 00 00001111 11122
Q ss_pred cCCCCceEEEEEcCCCCeEE----EEecCCcEEEEeCCCC--------c---eEEEecCCCCceeEEEECCC-CCEEEEE
Q 019006 181 FPDKYQITAVSFSDASDKIY----TGGIDNDVKVWDLRKG--------E---VSMTLQGHQDMITGMSLSPD-GSYLLTN 244 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~i~~v~~~~~-~~~l~t~ 244 (347)
++....+.+++|+|++++|+ +++.|+.|++||++++ + ....+.+|...|.+++|+|+ +++|+++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 34456799999999999999 7889999999998654 1 13456678999999999998 7899999
Q ss_pred cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-------
Q 019006 245 GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH------- 317 (347)
Q Consensus 245 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h------- 317 (347)
+.||+|++||++.. .......+| ...+.+++|+|+|++|++|+.||.|++||.+ ++....+..|
T Consensus 169 s~Dg~v~iwD~~~~----~~~~~~~~~----~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 169 LADGSIAVLQVTET----VKVCATLPS----TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp ETTSCEEEEEESSS----EEEEEEECG----GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred ECCCeEEEEEcCCC----cceeeccCC----CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 99999999999853 222223332 3578999999999999999999999999998 5555555444
Q ss_pred ccCeeeEEEcCCCCEEEEec-CCCc------EEeecC
Q 019006 318 TGSVNESVFHATEPVIGSCS-SDKQ------IYLGEI 347 (347)
Q Consensus 318 ~~~v~~~~~~~~~~~l~s~s-~D~~------i~i~~~ 347 (347)
...|.++.|+++..++++.+ .||. +++|++
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 33899999999988875433 4433 777764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=164.52 Aligned_cols=272 Identities=13% Similarity=0.036 Sum_probs=176.4
Q ss_pred cEEEEEECCCCCeEEEeeCC---CcEEEEeccCCCeeeEEEeCcccce-eEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 59 AVYTMKFNPAGTVIASGSHD---RDIFLWHVHGDCKNFMVLKGHKNAI-LDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.+..++|+|+|+.|+....+ ..|++|++.+. . ...+..+.... ..+.|+|+|++|+.++.++.|++||+.+++.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-Q-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-E-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC-c-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 36678999999988776543 35777887543 2 23333333333 3378999999999999999999999988765
Q ss_pred eeeeeccCcceeE-------------------eecCCCCCCEEEEE----cCCCceEEEeCCCCCceeecCCCCceEEEE
Q 019006 135 IKKMAEHNSFVNS-------------------CCPSRRGPPLVVSG----SDDGTAKLWDMRQRGAIQTFPDKYQITAVS 191 (347)
Q Consensus 135 ~~~~~~~~~~v~~-------------------~~~~~~~~~~~~s~----~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~ 191 (347)
......+...... ..+++++..+++.. ..+..|.+||+.++...........+..+.
T Consensus 115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 4433323322222 12333332222111 355689999998877655555556788999
Q ss_pred EcC-CCCeEEEEecC------CcEEEEeCCCCceEEEecCC--CCceeEEEECCCCCEEEEEcCC-----CcEEEEeCCC
Q 019006 192 FSD-ASDKIYTGGID------NDVKVWDLRKGEVSMTLQGH--QDMITGMSLSPDGSYLLTNGMD-----CKLCIWDMRP 257 (347)
Q Consensus 192 ~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l~t~~~d-----~~i~~wd~~~ 257 (347)
|+| ++..++..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|++|+..+.+ +.|.+||+..
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 999 77767665443 46889998765433 23223 2257789999999988776543 4499999864
Q ss_pred CCCcCceeEEEeccccccccceEEEEECC-CCCEEEEee----------------CCCeEEEEeCCCceeeEEecCCcc-
Q 019006 258 YAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAGS----------------SDRMVYIWDTTSRRILYKLPGHTG- 319 (347)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sgs----------------~dg~i~vwd~~~~~~~~~~~~h~~- 319 (347)
.. .. .+.... ... ..|+| ||++|++++ .++.|++||+.+++.. ++..|..
T Consensus 274 g~----~~-~l~~~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~ 341 (396)
T 3c5m_A 274 LE----NE-EVMVMP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTS 341 (396)
T ss_dssp CC----EE-EEEECC-----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCC
T ss_pred CC----eE-EeeeCC-----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCc
Confidence 32 11 111111 112 78999 999988765 3478999999887753 4555554
Q ss_pred ----------CeeeEEEcCCCCEEEEecC-CCcEEee
Q 019006 320 ----------SVNESVFHATEPVIGSCSS-DKQIYLG 345 (347)
Q Consensus 320 ----------~v~~~~~~~~~~~l~s~s~-D~~i~i~ 345 (347)
.+..++|+|+++.|+.++. ++...||
T Consensus 342 ~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 342 WDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cccccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887764 4554444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-18 Score=149.89 Aligned_cols=264 Identities=14% Similarity=0.119 Sum_probs=181.0
Q ss_pred EecCccccEEEEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEeC------cccceeEEEEcCCCCEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLKG------HKNAILDLHWTTDGSQI 115 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l 115 (347)
.+..+..+ .++|+|+|++|+++. .++.|.+||... .+....+.. +......++++|+|++|
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 44445444 899999999998886 367799999853 233333332 22346778999999999
Q ss_pred EEecC--CCeEEEEECCCCceeee-eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCcee------ecCCCC
Q 019006 116 ISASP--DKTLRAWDVETGKQIKK-MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQ------TFPDKY 185 (347)
Q Consensus 116 ~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~------~~~~~~ 185 (347)
+++.. ++.|.+||+.+++.+.. +..... ..+...+.+...+++.+.||++.+|+... ++... .+....
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 98864 58999999999887766 433221 11234455556788889999999999865 33221 111111
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE--EEec--C----C----CCceeEEEECCCCCEEEEEcC-------
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS--MTLQ--G----H----QDMITGMSLSPDGSYLLTNGM------- 246 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~----~----~~~i~~v~~~~~~~~l~t~~~------- 246 (347)
....+.+++++..++..+.++.|+++|+...... ..+. . + ......++|+|+++.++++..
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 1112233556677777778899999998754322 1111 0 0 011123789999888776542
Q ss_pred ----CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCc--eeeEEecCCccC
Q 019006 247 ----DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR--RILYKLPGHTGS 320 (347)
Q Consensus 247 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~ 320 (347)
.+.|.+||+.. .+.+..+..+ . ...++|+|||++|++++. +.|.+||..++ +++.++..+...
T Consensus 281 ~~~~~~~v~viD~~t----~~~v~~i~~~-----~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~ 349 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKT----KQRVARIPGR-----D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA 349 (361)
T ss_dssp TTCCCSEEEEEETTT----TEEEEEEECT-----T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSS
T ss_pred ccCCCceEEEEECCC----CcEEEEEecC-----C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCC
Confidence 34899999874 3445555543 2 778899999999998887 99999999999 999998778888
Q ss_pred eeeEEEcCCCC
Q 019006 321 VNESVFHATEP 331 (347)
Q Consensus 321 v~~~~~~~~~~ 331 (347)
...++++|++.
T Consensus 350 P~~~~~~p~G~ 360 (361)
T 2oiz_A 350 SLQVQFHPVGG 360 (361)
T ss_dssp EEEEEECCCSC
T ss_pred cEEEEecCCCC
Confidence 89999999975
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-19 Score=168.84 Aligned_cols=284 Identities=11% Similarity=0.024 Sum_probs=191.5
Q ss_pred EecCccccEEEEEECCCCCeEEEe--eCCCcEEEEeccCCCeeeEEEeCccccee---------EEEEc--CCCCE-EEE
Q 019006 52 LLTGHQSAVYTMKFNPAGTVIASG--SHDRDIFLWHVHGDCKNFMVLKGHKNAIL---------DLHWT--TDGSQ-IIS 117 (347)
Q Consensus 52 ~~~~h~~~V~~v~~~~~~~~l~s~--~~d~~v~~w~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-l~s 117 (347)
.+.+|...+..++|++++-.+++. +.++...||..... .....+..|...+. ...|+ |||++ |+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 466899999999999887777777 66888999986322 33445666665555 56666 99998 776
Q ss_pred ecC-CCeEEEEECC--C-Cceeeeeec-----cCcceeEeecCCCCCCEEEEEcCC----------CceEEEeCCC----
Q 019006 118 ASP-DKTLRAWDVE--T-GKQIKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDD----------GTAKLWDMRQ---- 174 (347)
Q Consensus 118 ~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d----------~~i~iwd~~~---- 174 (347)
++. +..|.++++. . +. ...+.. +...+...++++++. .+++++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 543 5667777765 2 33 344444 455666788888775 55555555 5899999987
Q ss_pred --CCceeec-CCCCceEEEEEcCCCCeEEEEecCC--------cEEEEeCC-CC---ceEEEecCCCCceeEEEECCCCC
Q 019006 175 --RGAIQTF-PDKYQITAVSFSDASDKIYTGGIDN--------DVKVWDLR-KG---EVSMTLQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 175 --~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~-~~---~~~~~~~~~~~~i~~v~~~~~~~ 239 (347)
+...... .+...+..++|+|+++.|+.++.++ .|++||+. ++ +......+|...+..+.|+|+|+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 4444444 4455678889999999998777553 79999998 56 43333444567789999999999
Q ss_pred EEEEEcCCC--cEEEEeCCCCCCcCceeEEEecccccc-----ccceEEEEECCCCCEEEEeeCCCeEEEE--eCCCcee
Q 019006 240 YLLTNGMDC--KLCIWDMRPYAPQNRCVKILEGHQHNF-----EKNLLKCGWSPDGSKVTAGSSDRMVYIW--DTTSRRI 310 (347)
Q Consensus 240 ~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~sgs~dg~i~vw--d~~~~~~ 310 (347)
++++++.++ .|.+||+... ........+ ... .-.+..++|+|+++++++++. +.++|| |..+++
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~----~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~- 327 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATG----AATQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE- 327 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTC----CEEESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred EEEEECCCCCeEEEEEECCCC----ceeeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence 888888888 5555665321 222222211 111 011456789999999999998 998888 666565
Q ss_pred eEEecCCccCeeeE-EEcCCCCEEEEecCCCcEEee
Q 019006 311 LYKLPGHTGSVNES-VFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 311 ~~~~~~h~~~v~~~-~~~~~~~~l~s~s~D~~i~i~ 345 (347)
+.++..|.+.+..+ +++.+.-.+++++.+....||
T Consensus 328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 328 LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 67888888888877 665554455556666443333
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-19 Score=170.26 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=177.9
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccc-----eeEEEEcCCCCEEEEecCC---------Ce
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNA-----ILDLHWTTDGSQIISASPD---------KT 123 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---------g~ 123 (347)
.....++|+|+|++|+++ |++|++|++.+.. ....+.+|... ..++.|||||++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN-SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC-EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCc-eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 345688999999999886 9999999986443 33456666543 2447899999999998876 56
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--Cce--------------
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQI-------------- 187 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v-------------- 187 (347)
+.+||+.+++.. .+..+...+....++|++..++ .+ .++.|++||+.++...+..... ..+
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la-~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA-YV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE-EE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE-EE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 679999988753 4555667788889999887654 44 4689999999877654422211 111
Q ss_pred ---EEEEEcCCCCeEEEEecCC------------------------------------cEEEEeCCC---Cc--eEEEec
Q 019006 188 ---TAVSFSDASDKIYTGGIDN------------------------------------DVKVWDLRK---GE--VSMTLQ 223 (347)
Q Consensus 188 ---~~~~~~~~~~~l~~~~~dg------------------------------------~i~iwd~~~---~~--~~~~~~ 223 (347)
..+.|+|||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3488999999998765321 488899987 63 233343
Q ss_pred ------CCCCceeEEEECCCCCEEEEEc----CCCcEEEEeCCCCCCcCcee--EEE--eccccccc-cceEEEEECCCC
Q 019006 224 ------GHQDMITGMSLSPDGSYLLTNG----MDCKLCIWDMRPYAPQNRCV--KIL--EGHQHNFE-KNLLKCGWSPDG 288 (347)
Q Consensus 224 ------~~~~~i~~v~~~~~~~~l~t~~----~d~~i~~wd~~~~~~~~~~~--~~~--~~~~~~~~-~~~~~~~~s~~g 288 (347)
+|...+..++|+|||+.++... .+..|.+||+........|. ..+ ..+..-.. .......|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 3677899999999999666543 33479999987543100011 111 22211111 002356799999
Q ss_pred CEEE-EeeC-C--CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE-EEecC
Q 019006 289 SKVT-AGSS-D--RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI-GSCSS 338 (347)
Q Consensus 289 ~~l~-sgs~-d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~ 338 (347)
+.|+ ..+. + ..|++||...++.. ++....-.+..+.. ++++.| .++..
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEec
Confidence 9887 6653 3 45888998876654 55544555655442 334444 44443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-17 Score=140.45 Aligned_cols=238 Identities=12% Similarity=0.224 Sum_probs=172.4
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec------cCcceeEeecCCCCCCEEEEEcC-CCceEEE
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE------HNSFVNSCCPSRRGPPLVVSGSD-DGTAKLW 170 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~s~~~-d~~i~iw 170 (347)
++-....+++++++++.+++...++.|.+||.. ++.+..+.. +...+..+++...+..++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 445568899999999988888889999999977 555555432 12345556663334456665533 7899999
Q ss_pred eCCCCCceeecCC--CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEEcC
Q 019006 171 DMRQRGAIQTFPD--KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGM 246 (347)
Q Consensus 171 d~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~ 246 (347)
| ..+..+..+.. ...+..++++++++.+++...++.|++||.. ++....+. .+...+..++++++++.+++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 45555555532 3468899999999877777778899999964 55555543 34456899999999998888888
Q ss_pred CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEeCCCceeeEEecCCcc--Ceee
Q 019006 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWDTTSRRILYKLPGHTG--SVNE 323 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd~~~~~~~~~~~~h~~--~v~~ 323 (347)
++.|.+||... ..+..+.... ....+..++++++|.++++...++ .|++||. .++.+..+..+.. .+..
T Consensus 184 ~~~i~~~~~~g-----~~~~~~~~~g--~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 184 AHCVKVFNYEG-----QYLRQIGGEG--ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp GTEEEEEETTC-----CEEEEESCTT--TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred CCEEEEEcCCC-----CEEEEEccCC--ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 89999999642 2333333221 113577899999999999888886 9999996 4566666655543 4779
Q ss_pred EEEcCCCCEEEEecCCCcEEeecC
Q 019006 324 SVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 324 ~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++++|++.++++ +.|+.|++|++
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEc
Confidence 999999998888 57999999975
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=151.88 Aligned_cols=244 Identities=10% Similarity=0.031 Sum_probs=164.1
Q ss_pred ccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE--eCcccceeEEEEcCCCCE--EEEec------------
Q 019006 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL--KGHKNAILDLHWTTDGSQ--IISAS------------ 119 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~--l~s~~------------ 119 (347)
+...+..++|+|+|++|++++.+ .|.+|++.......... ..+ .....++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 33467789999999999999888 99999985122222111 111 23556889999994 55554
Q ss_pred -CCCeEEEEECC-CCceeeeee----ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC-CCCce--eecC---CCCce
Q 019006 120 -PDKTLRAWDVE-TGKQIKKMA----EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-QRGAI--QTFP---DKYQI 187 (347)
Q Consensus 120 -~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~~--~~~~---~~~~v 187 (347)
.+|.+.+|++. +++....+. .+...+..+.+++++..++++...++.|.+||+. +++.. ..+. +...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 455443333 1345677788888876554444457899999997 55532 2222 24568
Q ss_pred EEEEEcCCCCeEEEEec-CCcEEEEeCC--CCceEE---Ee---c----CCCC------ceeEEE-ECCCCCEEEEEcCC
Q 019006 188 TAVSFSDASDKIYTGGI-DNDVKVWDLR--KGEVSM---TL---Q----GHQD------MITGMS-LSPDGSYLLTNGMD 247 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~~~---~~---~----~~~~------~i~~v~-~~~~~~~l~t~~~d 247 (347)
..++|+|+++++++++. ++.|.+|++. +++... .+ . +|.. .+..++ |+|+|++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 89999999999888775 6889999765 454321 12 1 1222 478899 99999998876543
Q ss_pred C------cEEEEeCCCCCCcCceeE---EEeccccccccceEEEEECC---CCCEEEEeeCC-CeEEEEeCCCc
Q 019006 248 C------KLCIWDMRPYAPQNRCVK---ILEGHQHNFEKNLLKCGWSP---DGSKVTAGSSD-RMVYIWDTTSR 308 (347)
Q Consensus 248 ~------~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~---~g~~l~sgs~d-g~i~vwd~~~~ 308 (347)
. .|.+|++.. .+.... ....+. .....++|+| ||++|++++.+ +.|.+|+....
T Consensus 276 ~~~~~~~~i~v~~~~~---~g~~~~~~~~~~~~~----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRD---CGSIEKQLFLSPTPT----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECT---TSCEEEEEEEEECSS----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECC---CCCEEEeeeeeecCC----CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 899999863 122221 122111 1234567899 89999998864 89999998765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=9e-17 Score=136.48 Aligned_cols=240 Identities=15% Similarity=0.259 Sum_probs=173.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe------CcccceeEEEE-cCCCCEEEEecC-CCeEEE
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK------GHKNAILDLHW-TTDGSQIISASP-DKTLRA 126 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~------~h~~~v~~~~~-~~~~~~l~s~~~-dg~i~i 126 (347)
+|-..+.++++++++.++++...++.|.+|+..+. ....+. +|...+..+++ .+++..+++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 56678999999999999998889999999998643 233332 24457889999 467766666543 899999
Q ss_pred EECCCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC---CCCceEEEEEcCCCCeEEEE
Q 019006 127 WDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 127 wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~ 202 (347)
|| .+++.+..+.. +...+..+++.+.+ .++++...++.|.+||.. +..+..+. ....+..++++++++.+++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 55666655532 23445667777665 577887888999999964 44444442 23468899999998877777
Q ss_pred ecCCcEEEEeCCCCceEEEecCC--CCceeEEEECCCCCEEEEEcCCC-cEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGH--QDMITGMSLSPDGSYLLTNGMDC-KLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
..++.|++||.. ++....+..+ ...+..++++++|+.+++...++ .|.+||.. ...+..+..+.. ...+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-----g~~~~~~~~~~~--~~~~ 253 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----GQLISALESKVK--HAQC 253 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----SCEEEEEEESSC--CSCE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-----CCEEEEEcccCC--CCcc
Confidence 788999999974 5555555433 35688999999999888887776 99999953 233444433221 1246
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
..++++|+|+++++ +.|+.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987777 57999999987654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=146.00 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=157.3
Q ss_pred cEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeC-c-----ccceeEEEEcCCCCEEEEecCC----------
Q 019006 59 AVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKG-H-----KNAILDLHWTTDGSQIISASPD---------- 121 (347)
Q Consensus 59 ~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~-h-----~~~v~~~~~~~~~~~l~s~~~d---------- 121 (347)
.+..++|+|+|+.+ +++..++.|++|++.+. +....+.. + ...+..++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccccc
Confidence 57789999999865 55667899999998643 33333332 2 2337889999999999998865
Q ss_pred --CeEEEEECCCCcee---eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC-----------
Q 019006 122 --KTLRAWDVETGKQI---KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY----------- 185 (347)
Q Consensus 122 --g~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----------- 185 (347)
+.|.+||+.+++.. ..+. +...+..+++++++. +++ ++ +.|.+||+.+++.+..++...
T Consensus 123 ~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 197 (349)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred CCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccc
Confidence 89999999875432 2222 333455666777765 554 43 349999998887766554321
Q ss_pred --------------ceEEEEEcCCCCeEEEEecCC-cEEEEeCCCCceE-EEecCCCCceeEEEECC-CCCEEEEEcCCC
Q 019006 186 --------------QITAVSFSDASDKIYTGGIDN-DVKVWDLRKGEVS-MTLQGHQDMITGMSLSP-DGSYLLTNGMDC 248 (347)
Q Consensus 186 --------------~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~ 248 (347)
....+.+++++.......... .+..+|..+++.. ..+..+...+.+++|+| ++++++++ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~ 275 (349)
T 1jmx_B 198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN 275 (349)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence 234455554432110000000 1122444433321 11222445688999999 99999988 88
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
.|.+||+... +....+... ..+..++|+|+|++|++++.++.|++||..+++.+..++.+
T Consensus 276 ~v~~~d~~~~----~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 276 RLAKYDLKQR----KLIKAANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTT----EEEEEEECS-----SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEEEEECccC----eEEEEEcCC-----CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9999998742 333333321 23568899999999998888999999999999988877654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-17 Score=146.70 Aligned_cols=261 Identities=11% Similarity=0.107 Sum_probs=178.1
Q ss_pred CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECCCCceeeeeecc-----
Q 019006 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVETGKQIKKMAEH----- 141 (347)
Q Consensus 77 ~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~----- 141 (347)
.|+.|++||.... +....+..+..+ .++|+|++++++++. .++.|.+||..+.+.+..+...
T Consensus 29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 4789999997533 344556655555 899999999999886 3678999999988887776532
Q ss_pred -CcceeEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceee-cCCCCceEEEEEcCCC-CeEEEEecCCcEEEEeCCC-C
Q 019006 142 -NSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDAS-DKIYTGGIDNDVKVWDLRK-G 216 (347)
Q Consensus 142 -~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~ 216 (347)
......+.+++++..++++... +++|.+||+.+++.+.. ++.... ..+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 2334456777777554444333 68999999999888777 654332 224566765 5677888999999998865 4
Q ss_pred ceEEE------ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc-----c-cccceEEEEE
Q 019006 217 EVSMT------LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH-----N-FEKNLLKCGW 284 (347)
Q Consensus 217 ~~~~~------~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~ 284 (347)
+.... +.....++ .+.+++++..++..+.++.+.++|+..... .....+..... . ......-++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccccCCeeEEEE
Confidence 44311 11122222 233456777777778889999999864221 11111111000 0 0011112578
Q ss_pred CCCCCEEEEeeC-----------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 285 SPDGSKVTAGSS-----------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~g~~l~sgs~-----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+++.++++.. ++.|.+||+.+++.+.+++.+. +..++|+|++++|++++. ++|.+||.
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 999988877543 3589999999999999999887 999999999999988887 99999984
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=171.30 Aligned_cols=239 Identities=15% Similarity=0.122 Sum_probs=161.5
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc---ceeEeecCCCCCCEEEEEcC---------CCceEEEe
Q 019006 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS---FVNSCCPSRRGPPLVVSGSD---------DGTAKLWD 171 (347)
Q Consensus 104 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~---------d~~i~iwd 171 (347)
.+++|+|++++++ .+.|+.|++||+.+++....+..+.. .+....+++++. .+++++. ++.|++||
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEE
Confidence 3678999996555 45699999999999887655544432 267788888775 5555554 68999999
Q ss_pred CCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe-cCCCCce-----------------eEEE
Q 019006 172 MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL-QGHQDMI-----------------TGMS 233 (347)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----------------~~v~ 233 (347)
+.+++.+........+..++|+|+|+.|+.+. ++.|++||+.+++..... .++...| .+++
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 98876531122234588899999999999875 789999999887654322 2222222 4899
Q ss_pred ECCCCCEEEEEcCCC----------------------------------cEEEEeCCCCCCcCceeEEEe-ccccccccc
Q 019006 234 LSPDGSYLLTNGMDC----------------------------------KLCIWDMRPYAPQNRCVKILE-GHQHNFEKN 278 (347)
Q Consensus 234 ~~~~~~~l~t~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (347)
|+|||++|+.++.|. .|++||+....... ...... .........
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG-PQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC-CEECCCCHHHHTSCEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc-eeEccCCccCCCCcce
Confidence 999999999987552 67888876421100 001100 000012346
Q ss_pred eEEEEECCCCCEEEEeeCC----CeEEEEe----CCCceeeEEe----cCCccCee-----eEEEcCCCCEEEE--ecCC
Q 019006 279 LLKCGWSPDGSKVTAGSSD----RMVYIWD----TTSRRILYKL----PGHTGSVN-----ESVFHATEPVIGS--CSSD 339 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~d----g~i~vwd----~~~~~~~~~~----~~h~~~v~-----~~~~~~~~~~l~s--~s~D 339 (347)
+..++|+||++++++.... ..|++|| +.+++....+ .+|.+.+. .++|+|+++.++. ...|
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 7889999998877774432 3488999 8887766555 47787777 8999999996554 4455
Q ss_pred C--cEEeec
Q 019006 340 K--QIYLGE 346 (347)
Q Consensus 340 ~--~i~i~~ 346 (347)
| .|++++
T Consensus 335 g~~~l~~~~ 343 (719)
T 1z68_A 335 GYKHIHYIK 343 (719)
T ss_dssp SCEEEEEES
T ss_pred CceEEEEEE
Confidence 5 466555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-17 Score=142.31 Aligned_cols=273 Identities=12% Similarity=0.075 Sum_probs=186.2
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
..|.+++|++++..++..+.++.++.|. + .....+..+...+.+++|+++++.++++..++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT--A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE--C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc--c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3467778888888887778888999982 2 34455667777789999999999888888899999999988765443
Q ss_pred eeccCcceeEeecCCCCCCEEEEEcCC----CceEEEeCCCCCceeecC---CCCceEEEEEcCCCCeEEEEec------
Q 019006 138 MAEHNSFVNSCCPSRRGPPLVVSGSDD----GTAKLWDMRQRGAIQTFP---DKYQITAVSFSDASDKIYTGGI------ 204 (347)
Q Consensus 138 ~~~~~~~v~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------ 204 (347)
...+...+..+++.+++ .++++...+ +.|.+||..++.....+. ....+..+.++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 33445567777777665 566666655 689999988766542222 2346889999999877666543
Q ss_pred CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE-EEcCCCcEEEEeCCCCCCcCcee--EEEeccccccccceEE
Q 019006 205 DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAPQNRCV--KILEGHQHNFEKNLLK 281 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-t~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 281 (347)
.+.|..+|..+++... +..+...+..++|+|++++++ +...++.|.+||+.......... ....... . ...+..
T Consensus 161 ~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~-~~~~~~ 237 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-G-HEGPDS 237 (333)
T ss_dssp CEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-S-SSEEEE
T ss_pred CceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-C-CCCCCc
Confidence 3567777766544332 222234578899999998654 44567899999985311110000 0000000 0 124667
Q ss_pred EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc------CeeeEEEcCCCCEEEEecCC
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG------SVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~------~v~~~~~~~~~~~l~s~s~D 339 (347)
++++++|.++++...++.|++||. .++.+..+..+.. .+..++|+|++..|..++.+
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 889999998888888899999998 4666666654433 68999999997666544444
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-17 Score=140.58 Aligned_cols=239 Identities=10% Similarity=0.136 Sum_probs=176.3
Q ss_pred cceeEEEEcCCCCEEEEecCC------------------------CeEEEEECCCCceeeeeec-cCcceeEeecCCCCC
Q 019006 101 NAILDLHWTTDGSQIISASPD------------------------KTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGP 155 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 155 (347)
..+.+++++++|+.+++...+ +.|.+||..+++.+..+.. +......+++.+.+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g- 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG- 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS-
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC-
Confidence 568999999999988888777 4799999988887655532 22345667777665
Q ss_pred CEEEEEcCCCceEEEeCCCCC-ceeecC----------CCCceEEEEEcC-CCCeEEEEe-cCCcEEEEeCCCCceEEEe
Q 019006 156 PLVVSGSDDGTAKLWDMRQRG-AIQTFP----------DKYQITAVSFSD-ASDKIYTGG-IDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 222 (347)
.++++...+++|+.||..... .+..+. .......++++| ++..+++.+ .++.|++|| ..++....+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 488888889999999986542 333332 123588999999 676666765 689999999 456666655
Q ss_pred cC----------CCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-----
Q 019006 223 QG----------HQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP----- 286 (347)
Q Consensus 223 ~~----------~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----- 286 (347)
.. +......++++|+ ++.+++...++.|++||... +..+..+.... ....+..++|+|
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~----G~~~~~~~~~~--~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT----KEFVREIKHAS--FGRNVFAISYIPGFLFA 255 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT----CCEEEEECCTT--TTTCEEEEEEETTEEEE
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC----CcEEEEEeccc--cCCCcceeeecCCEEEE
Confidence 32 2234789999998 77777778889999999763 34444443221 224567888888
Q ss_pred -CCCEEEEeeCCCeEEEEeCCCceeeEEe---cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 -DGSKVTAGSSDRMVYIWDTTSRRILYKL---PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 -~g~~l~sgs~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|...++.+.+..|++||..+++.+..+ .++...+..++++|++.++++...++.|++|++
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 4444444445668999999999998887 467778999999999999999999999999874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-17 Score=140.81 Aligned_cols=243 Identities=9% Similarity=0.073 Sum_probs=172.4
Q ss_pred cccEEEEEECCCCCeEEEeeCC------------------------CcEEEEeccCCCeeeEEEe-CcccceeEEEEcCC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHD------------------------RDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTD 111 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d------------------------~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 111 (347)
-+.|.+|+++|+|+++++...+ +.|++||.... +....+. ++-.....++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECCC
Confidence 3579999999999999988877 47999998532 2222222 34457889999999
Q ss_pred CCEEEEecCCCeEEEEECCCCc-eeeeee---------ccCcceeEeecCCCCCCEEEEEc-CCCceEEEeCCCCCceee
Q 019006 112 GSQIISASPDKTLRAWDVETGK-QIKKMA---------EHNSFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~ 180 (347)
|+.+++...++.|++||..... .+..+. .+......+++.+.+..++++.+ .++.|++||. .+..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 9988888889999999976542 344432 22234566778775567888876 6899999994 4555554
Q ss_pred cCC-----------CCceEEEEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEE--
Q 019006 181 FPD-----------KYQITAVSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTN-- 244 (347)
Q Consensus 181 ~~~-----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~-- 244 (347)
+.. -.....++++|+ +..+++...++.|++||..+++....+. .+...+..++|+| +..+.+.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 431 123788999998 5555666778899999998888777763 3456788999999 4333333
Q ss_pred -----cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 245 -----GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 245 -----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
..+..|++||... ...+..+.... .....+..++++|+|.++++...++.|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~----g~~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSS----GEIIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTT----CCEEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCC----CeEEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3455899999864 33444442111 1124578899999998888888999999999754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=165.78 Aligned_cols=239 Identities=15% Similarity=0.166 Sum_probs=159.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcce-----eEeecCCCCCCEEEEEcCC---------Cce
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV-----NSCCPSRRGPPLVVSGSDD---------GTA 167 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~s~~~d---------~~i 167 (347)
...++.|+|++.+++++ |+.|++||+.+++....+..+.... ....+++++. .++.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEE
Confidence 45688999999888886 9999999999998766555554322 2245677764 55666655 556
Q ss_pred EEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCce-----------------
Q 019006 168 KLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMI----------------- 229 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i----------------- 229 (347)
.+||+.+++......+...+...+|+|+|+.|+.+ .++.|++||+.+++... +..++...+
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 79999988765544455678999999999999887 46889999998776433 222332222
Q ss_pred eEEEECCCCCEEEEEcCCC------------------------------------cEEEEeCCC---CCCcCceeEEEec
Q 019006 230 TGMSLSPDGSYLLTNGMDC------------------------------------KLCIWDMRP---YAPQNRCVKILEG 270 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d~------------------------------------~i~~wd~~~---~~~~~~~~~~~~~ 270 (347)
..+.|||||++|+..+.|. .|.+||+.. .... .. ..+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-~~-~~l~~ 251 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-TS-IQITA 251 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-CE-EEECC
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-eE-EEecC
Confidence 3489999999999875332 356666653 2100 11 11211
Q ss_pred cc--cccccceEEEEECCCCCEEEEee----CCCeEEEEeCCCce----e--eEEe--cCCccCee-----eEEEcCCCC
Q 019006 271 HQ--HNFEKNLLKCGWSPDGSKVTAGS----SDRMVYIWDTTSRR----I--LYKL--PGHTGSVN-----ESVFHATEP 331 (347)
Q Consensus 271 ~~--~~~~~~~~~~~~s~~g~~l~sgs----~dg~i~vwd~~~~~----~--~~~~--~~h~~~v~-----~~~~~~~~~ 331 (347)
.. ......+..++|+|||++++... .+..|++||+.+++ + +.++ .+|.+.|. ..+|+|+++
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 00 00234578899999999766543 33479999998876 2 2222 56766665 789999999
Q ss_pred EEE-EecC-CC--cEEeec
Q 019006 332 VIG-SCSS-DK--QIYLGE 346 (347)
Q Consensus 332 ~l~-s~s~-D~--~i~i~~ 346 (347)
.|+ ..+. || .|++++
T Consensus 332 ~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEcCCCceEEEEEE
Confidence 877 6653 44 466665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=156.61 Aligned_cols=245 Identities=13% Similarity=0.069 Sum_probs=169.0
Q ss_pred EeCcccceeEEEEcCCCCEEEEe--cCCCeEEEEECCCCceeeeeeccCccee---------Eeec--CCCCCC-EEEEE
Q 019006 96 LKGHKNAILDLHWTTDGSQIISA--SPDKTLRAWDVETGKQIKKMAEHNSFVN---------SCCP--SRRGPP-LVVSG 161 (347)
Q Consensus 96 ~~~h~~~v~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~--~~~~~~-~~~s~ 161 (347)
+.+|...+..++|+++.-++++. +.++...||....+.....+..+...+. ...+ +|++.. ++++.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 45688889999999876666666 6688999998654444555555543333 3323 366666 55555
Q ss_pred cCCCceEEEeCC--C-CCceeecC-----CCCceEEEEEcCCCCeEEEEecC----------CcEEEEeCCC------Cc
Q 019006 162 SDDGTAKLWDMR--Q-RGAIQTFP-----DKYQITAVSFSDASDKIYTGGID----------NDVKVWDLRK------GE 217 (347)
Q Consensus 162 ~~d~~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~ 217 (347)
..+..|.++++. . +....... +...+..++|+|+++.|+.++.+ ..|++||+.+ ++
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 456777777775 2 33332222 34568899999999999988876 5799999987 54
Q ss_pred eEEEec-CCCCceeEEEECCCCCEEEEEcCC--------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC
Q 019006 218 VSMTLQ-GHQDMITGMSLSPDGSYLLTNGMD--------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 218 ~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 288 (347)
. ..+. .+...+..++|+|||++|+.++.+ ..|.+||+...............+ ...+..+.|+|||
T Consensus 179 ~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spdg 253 (662)
T 3azo_A 179 V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPDG 253 (662)
T ss_dssp S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTTS
T ss_pred e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCCC
Confidence 4 4444 555678889999999999887754 379999986211001222222221 2457788999999
Q ss_pred CEEEEeeCCC--eEEEEeCCCceeeEEecCCccC--------eeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 289 SKVTAGSSDR--MVYIWDTTSRRILYKLPGHTGS--------VNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 289 ~~l~sgs~dg--~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+++++++.++ .|++||+.+++......++... +..++|+|++.++++++. +.++||.
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 9888888888 7788887777655444443332 568999999999999998 9988883
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-14 Score=122.29 Aligned_cols=275 Identities=10% Similarity=0.054 Sum_probs=190.5
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
+..+...+.++++.++|.++++...++.|.+|+..+. ........+...+.++++++++..+++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 3455678999999999998887777889999998622 2212223345678999999999988887778999999976 3
Q ss_pred ceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cC-CCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 133 KQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FP-DKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 133 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+. ..+. .....+..++..+.+ .++++...++.|..||. .+..... .+ ....+..+++++++...++...++.|
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred cE-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 32 2222 133455666666544 57777777889999998 4433222 22 23468899999998776666667899
Q ss_pred EEEeCCCCceEEE-ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 209 KVWDLRKGEVSMT-LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 209 ~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
..||. +++.... +......+.+++++++++..++...++.|.+||. ... . ..+... .....+..++++++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~----~-~~~~~~--~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE----I-TEFKIP--TPNARPHAITAGAG 235 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----E-EEEECS--STTCCEEEEEECST
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----E-EEEECC--CCCCCceeEEECCC
Confidence 99998 6654332 3334456889999999998777777889999997 321 1 112111 11245778999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceee-EEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRIL-YKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
|.+.++...++.|..||. +++.. ..++.+...+..+++ +++.+.++.+.++.++
T Consensus 236 g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 997777767889999998 44433 234556677899999 8888887766544443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=137.90 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=165.9
Q ss_pred ccEEEEEECCCCCeEEEee---------CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---C--e
Q 019006 58 SAVYTMKFNPAGTVIASGS---------HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---K--T 123 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~---------~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g--~ 123 (347)
..+..+++ +|+.+|... .++.|++|++.+.. ...+ ..+..+.|+|||++|+.++.+ + .
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA--RRFI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--EEEE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc--eEEc----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 35666777 888776542 25678899986532 2233 467889999999999887654 3 4
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC--------------------------CCceEEEeCCCCCc
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD--------------------------DGTAKLWDMRQRGA 177 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--------------------------d~~i~iwd~~~~~~ 177 (347)
|.+|++.+++..... .... +..+.+++++..++++... ...|.+||+.++..
T Consensus 87 l~~~~~~~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLETLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTTTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCCCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 777888877654333 3333 7778888877655544422 25688999987765
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCC-------cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC---
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDN-------DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD--- 247 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d--- 247 (347)
+..+... .+..+.|+|++ .++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+..+.+
T Consensus 165 ~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 165 IEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred EeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 2333223 67889999999 777775542 334443334443 333333 344443 8999988877644
Q ss_pred -----CcEEEEeCCCCCCcCceeEEEeccccccccceEE-EEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 248 -----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK-CGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 248 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
..|.+|| . .........+ ...+.. +.|+ |+ ++++++.++.++|| +.+++.. .+..+.+.|
T Consensus 239 ~~~~~~~l~~~d-~-----~~~~~l~~~~----~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v 304 (347)
T 2gop_A 239 YMSEHNKLYIYD-G-----KEVMGILDEV----DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWI 304 (347)
T ss_dssp CCCSSCEEEEEC-S-----SCEEESSTTC----CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEE
T ss_pred CccccceEEEEC-C-----CceEeccccC----CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeE
Confidence 3677787 2 1122222221 234554 7899 88 99999999999999 8766554 444557889
Q ss_pred eeEEEcCCCCEEEEecCCCcE-Eee
Q 019006 322 NESVFHATEPVIGSCSSDKQI-YLG 345 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~D~~i-~i~ 345 (347)
..++|+| .++++++.++.. .||
T Consensus 305 ~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 305 MGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEESS--SEEEEEECSSSCCEEE
T ss_pred EeeeeeC--cEEEEEcCCCChHHhe
Confidence 9999999 677777776653 554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=140.43 Aligned_cols=248 Identities=14% Similarity=0.106 Sum_probs=160.8
Q ss_pred eeeEEEeCcccceeE-----EEEcCCCCEEEEecC-CC--eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEc
Q 019006 91 KNFMVLKGHKNAILD-----LHWTTDGSQIISASP-DK--TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGS 162 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 162 (347)
.....+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+....+++++. .|+.++
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~ 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-ALFYVK 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-EEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-EEEEEe
Confidence 344556666555544 789999999998887 66 488889988876555544444443456777664 677777
Q ss_pred CCCceEEEeCCCCCceeecCCCC-ceEE--EEEcCCCCeEEEE----------------------ecCCcEEEEeCCCCc
Q 019006 163 DDGTAKLWDMRQRGAIQTFPDKY-QITA--VSFSDASDKIYTG----------------------GIDNDVKVWDLRKGE 217 (347)
Q Consensus 163 ~d~~i~iwd~~~~~~~~~~~~~~-~v~~--~~~~~~~~~l~~~----------------------~~dg~i~iwd~~~~~ 217 (347)
.++.+++||+.+++......... .+.. ..+++++..++.. ..+..|++||+.+++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 88899999999877654443322 2322 3458888887642 234679999999886
Q ss_pred eEEEecCCCCceeEEEECC-CCCEEEEEcCC------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 218 VSMTLQGHQDMITGMSLSP-DGSYLLTNGMD------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
... +..+...+..+.|+| +|+.|+....+ ..|.++|..... ...+..+.. ...+...+|+|||+.
T Consensus 180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~--~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAE--GESCTHEFWVPDGSA 251 (388)
T ss_dssp EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCT--TEEEEEEEECTTSSC
T ss_pred eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCC--CcccccceECCCCCE
Confidence 543 334556789999999 99988876653 367777765321 122222110 124667889999998
Q ss_pred EEEeeC-C----CeEEEEeCCCcee--eEEecCCcc---CeeeEEEcCCCCEEEEe---------cCCCcEEeecC
Q 019006 291 VTAGSS-D----RMVYIWDTTSRRI--LYKLPGHTG---SVNESVFHATEPVIGSC---------SSDKQIYLGEI 347 (347)
Q Consensus 291 l~sgs~-d----g~i~vwd~~~~~~--~~~~~~h~~---~v~~~~~~~~~~~l~s~---------s~D~~i~i~~~ 347 (347)
|+..+. + +.|++||+.+++. +..++++.. .....+|+|+++.|+.. ..+..|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 866443 2 2399999998874 334444211 12334799999988754 45678999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-15 Score=124.82 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=168.7
Q ss_pred eEecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..+..+.....+++|+|+|+ +++++..++.|+.|+..+. ...+..+...+.+++++++|+++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 34556667788999999998 8888889999999998654 4455667778999999999998888877899999999
Q ss_pred CCCceeeeeecc----CcceeEeecCCCCCCEEEE----Ec-------------CCCceEEEeCCCCCceeecCCCCceE
Q 019006 130 ETGKQIKKMAEH----NSFVNSCCPSRRGPPLVVS----GS-------------DDGTAKLWDMRQRGAIQTFPDKYQIT 188 (347)
Q Consensus 130 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~v~ 188 (347)
.+++........ ...+..+++.+++ .++++ |+ ..+.|..++.. +.............
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 777643322211 1233456666655 56665 33 12345555544 33322333445678
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCC-CCce---EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 189 AVSFSDASDKIYTGGIDNDVKVWDLR-KGEV---SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
.++|+|+++.+++.+.++.|++||+. .++. ...+..+...+.+++++++|+..++. ++.|.+||.. ...
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-----g~~ 248 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-----GDE 248 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-----SCE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-----CCE
Confidence 99999999988777788999999986 4443 22333345567889999999877666 7889999964 233
Q ss_pred eEEEeccccccccceEEEEE-CCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 265 VKILEGHQHNFEKNLLKCGW-SPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
+..+..+. . +..++| +|+++.|++++.+ .+..++..++++
T Consensus 249 ~~~~~~~~----~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 249 LGRVLTPQ----T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECSS----C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEECCC----C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 44444322 2 667888 6899999988876 466667766654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-15 Score=126.29 Aligned_cols=235 Identities=10% Similarity=0.007 Sum_probs=167.5
Q ss_pred EEEeCcccceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 94 MVLKGHKNAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 94 ~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
..+..+.....+++|+|+++ .++++..++.|..|+..++ ...+..+...+..+++.+++ .++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcC
Confidence 34445556678999999998 7778888999999999876 55555566667777777765 47777767789999999
Q ss_pred CCCCceeecCC-----CCceEEEEEcCCCCeEEE----Eec-------------CCcEEEEeCCCCceEEEecCCCCcee
Q 019006 173 RQRGAIQTFPD-----KYQITAVSFSDASDKIYT----GGI-------------DNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 173 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
.++........ ...+..++++|+++.+++ |+. .+.|..++.. ++. ..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCc
Confidence 77664332211 124567999999987776 331 3467677665 443 33444556678
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.++|+|+++.+++...++.|.+||+... +.. ...+ .. ....+..++++++|.++++. ++.|++||..
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~---g~~~~~~~~~-~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNAR---GETEYQGVHF-TV---EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSS---SCEEEEEEEE-CC---SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCC---CcCcCCCeEe-eC---CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 9999999998877788899999998621 111 1222 11 12334567899999977766 7899999986
Q ss_pred ceeeEEecCCccCeeeEEE-cCCCCEEEEecCCCcEEe
Q 019006 308 RRILYKLPGHTGSVNESVF-HATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~D~~i~i 344 (347)
++.+..+..+.. +..++| +|+++.|..++.++..++
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 777778887777 999999 588888888887765544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-14 Score=121.49 Aligned_cols=236 Identities=6% Similarity=-0.080 Sum_probs=161.5
Q ss_pred ceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 102 AILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
...+++++++++.++ +...++.|.+|+..+.............+..+++.+.+ .++++.. ++.|..||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeee
Confidence 567899999998777 55778999999876544322111222344556666654 4666655 88999999876543322
Q ss_pred c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 181 F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 181 ~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
. .....+..+++++++..+++...++.|.+|+..+.............+.+++++++++.+++...++.|.+||.....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 1 222568899999998877776778899999866544333222333457889999999988777778899999976321
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
....... . ...+..++++++|.++++...++.|++||............+...+..+++++++.++++...+
T Consensus 183 ----~~~~~~~---~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 183 ----QVVLPFT---D-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp ----EEECCCS---S-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred ----eEeeccc---C-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 1111111 1 1357788999999888888888999999987655443222344578999999999999999999
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
+.|+++++
T Consensus 255 ~~v~~~~~ 262 (270)
T 1rwi_B 255 DRVVKLTS 262 (270)
T ss_dssp TEEEEECC
T ss_pred CEEEEEcC
Confidence 99999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-16 Score=148.17 Aligned_cols=244 Identities=11% Similarity=-0.027 Sum_probs=158.4
Q ss_pred CccccEEEEEECCCCCeEE-----EeeCCCcEEEEeccCCCeeeEEEeCcccce--eEEEEcCCCCEEEEecCCCe----
Q 019006 55 GHQSAVYTMKFNPAGTVIA-----SGSHDRDIFLWHVHGDCKNFMVLKGHKNAI--LDLHWTTDGSQIISASPDKT---- 123 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~-----s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~~~dg~---- 123 (347)
+|...+..++|||||++|| .|+.+.+|++||+.+.... ...+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---SSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---CCcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 5666899999999999998 5666788999999754221 01122222 67899999999999988776
Q ss_pred ---------EEEEECCCCce----eeeeeccCcceeEeecCCCCCCEEEEEcCC-C--ceEEEeCCCCCceeecCCCCce
Q 019006 124 ---------LRAWDVETGKQ----IKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-G--TAKLWDMRQRGAIQTFPDKYQI 187 (347)
Q Consensus 124 ---------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~v 187 (347)
|++|++.++.. +.....+...+....+++++..++++...+ + .|.++|..++...........+
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK 274 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence 99999988752 222233445667778888886665554433 2 5666766554443333333344
Q ss_pred EEEEEcCCCCeEEEEec----CCcEEEEeCCCCce---EEEecCC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 188 TAVSFSDASDKIYTGGI----DNDVKVWDLRKGEV---SMTLQGH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
....+ +++. ++..+. ++.|.+||+.+++. ...+..+ ...+..++|+ ++..+++...|+..++|.+...
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~- 350 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK- 350 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-
Confidence 44445 4556 544443 57899999977652 2333333 4567888887 6778888888998888866421
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEe----eCCCeEEEEeCCCcee
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG----SSDRMVYIWDTTSRRI 310 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg----s~dg~i~vwd~~~~~~ 310 (347)
......+..+. ...+..++++|+++.|+.. ...+.|++||+.+++.
T Consensus 351 --g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 --GKPVRTVQLPG---VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp --CCEEEECCCSS---SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred --CCeeEEecCCC---CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 22223332211 2345567789999877733 3357899999988763
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=139.35 Aligned_cols=242 Identities=14% Similarity=0.057 Sum_probs=164.8
Q ss_pred cccceeEEEEcCCCCEEEEecCCC-----eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc-------
Q 019006 99 HKNAILDLHWTTDGSQIISASPDK-----TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT------- 166 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~------- 166 (347)
|...+..++|||||++|+.++.++ .|++||+.+++.......+. .+..+.+++++. .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~-~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGK-GMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSS-EEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCC-EEEEEEECCcccccccc
Confidence 444688999999999998765433 89999999987665332222 244567777765 4555555554
Q ss_pred ---------eEEEeCCCCCce--eecC---CCCceEEEEEcCCCCeEEEEec-----CCcEEEEeCCC------Cc-eEE
Q 019006 167 ---------AKLWDMRQRGAI--QTFP---DKYQITAVSFSDASDKIYTGGI-----DNDVKVWDLRK------GE-VSM 220 (347)
Q Consensus 167 ---------i~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~ 220 (347)
|++|++.++... ..+. +...+..+.|+|++++++..+. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876521 2222 2334778999999999887664 56899999976 43 345
Q ss_pred EecCCCCceeEEEECCCCCEEEEEcCC----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 221 TLQGHQDMITGMSLSPDGSYLLTNGMD----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~~~~l~t~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
.+..+...+.. .|+|+|+.|+..+.+ +.|.+||+..... ...+.+..+.. ...+..++|++++.++++...
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~--~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHE--KDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCS--SCEEEEEEEETTTEEEEEEEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCC--CCeEEEEEEEcCCEEEEEEEE
Confidence 55556555544 488888887766543 3699999875321 11123333221 124667888888888888888
Q ss_pred CCe--EEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEE----ecCCCcEEeecC
Q 019006 297 DRM--VYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS----CSSDKQIYLGEI 347 (347)
Q Consensus 297 dg~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~s~D~~i~i~~~ 347 (347)
|+. |++||+.+++.+..+..+.+.+..++++|+++.++. ....++|+++|+
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 884 667787778777888888888999999999876652 224578888874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-13 Score=112.41 Aligned_cols=275 Identities=10% Similarity=0.026 Sum_probs=188.7
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.....+.+|.+.++|.+.++...++.|.+|+..+. .....+..+...+.++++++++...++...++.|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 44567899999999998888878899999997622 2222233344678999999999888877778899999987 544
Q ss_pred eeeeec--cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-ecC-CCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 135 IKKMAE--HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TFP-DKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 135 ~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
. .+.. ....+..++..+.+ .++++...++.|..+|.. +.... .++ ....+..++++++++..++...++.|..
T Consensus 95 ~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 95 T-EYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp E-EEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred E-EecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 2 2221 23445566666544 577777667889999987 44332 223 2346889999999886555556788999
Q ss_pred EeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 211 WDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 211 wd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
||. +++... ....+...+..++++++++..++....+.|.+||.. . .... .... .....+..++++++|.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g----~~~~-~~~~--~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G----EISE-YDIP--TPNARPHAITAGKNSE 242 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C----CEEE-EECS--STTCCEEEEEECSTTC
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C----cEEE-EECC--CCCCCceEEEECCCCC
Confidence 998 454332 222344568899999999877777777789999862 1 1111 1111 1123577889999999
Q ss_pred EEEEeeCCCeEEEEeCCCceee-EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTTSRRIL-YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+.++...++.|..||.. ++.. ..+......+..+++.+++.+.++.. + .|..+|
T Consensus 243 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 77777778899999984 4433 33454556789999999998777666 4 555543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-15 Score=142.31 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=159.8
Q ss_pred CccccEEEEEECCCCCeEEEeeCCC-----cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe------
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDR-----DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT------ 123 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~------ 123 (347)
+|...+..++|||||++||.+..++ .|++||+.+.......+. ...+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEeCCCEEEEEEECCccccccc
Confidence 4556789999999999998765543 899999965322111222 223677999999999998887765
Q ss_pred ----------EEEEECCCCcee----eeeeccCcceeEeecCCCCCCEEEEEcC----CCceEEEeCCC------CC-ce
Q 019006 124 ----------LRAWDVETGKQI----KKMAEHNSFVNSCCPSRRGPPLVVSGSD----DGTAKLWDMRQ------RG-AI 178 (347)
Q Consensus 124 ----------i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~s~~~----d~~i~iwd~~~------~~-~~ 178 (347)
|++|++.+++.. .....+........+++++..++++... +..|.+||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999877522 1222234455677788887655554431 56899999875 32 23
Q ss_pred eec-CCCCceEEEEEcCCCCeEEEEecC----CcEEEEeCCCCce--EEEecCCCC--ceeEEEECCCCCEEEEEcCCCc
Q 019006 179 QTF-PDKYQITAVSFSDASDKIYTGGID----NDVKVWDLRKGEV--SMTLQGHQD--MITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 179 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
..+ .+...+.. .|+++++.++..+.+ +.|.+||+.++.. ...+..|.. .+..++|++++..+++...|+.
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 333 22223333 478888887766543 3599999987641 234444433 6888999877778888888875
Q ss_pred --EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-e---CCCeEEEEeCCCce
Q 019006 250 --LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-S---SDRMVYIWDTTSRR 309 (347)
Q Consensus 250 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s---~dg~i~vwd~~~~~ 309 (347)
|.+||+.. +.....+..+ ...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 359 ~~l~~~~~~~----g~~~~~l~~~----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 359 NTLQLHDLAT----GALLKIFPLE----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTT----CCEEEEECCC----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCC----CCEEEecCCC----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 55566532 2233344332 3457778899999876633 2 34789999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-15 Score=126.73 Aligned_cols=255 Identities=9% Similarity=-0.052 Sum_probs=174.5
Q ss_pred CCCcEEEEeccCCCeeeEEE----e--CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeec
Q 019006 77 HDRDIFLWHVHGDCKNFMVL----K--GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150 (347)
Q Consensus 77 ~d~~v~~w~~~~~~~~~~~~----~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 150 (347)
.++.|.+||.... +....+ . ........+.+. +++..++...++.|.+||..+++.+..+.. ......+++
T Consensus 15 ~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEE
T ss_pred CCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEE
Confidence 4789999998532 111111 0 111335667774 345556666789999999999998887743 334455666
Q ss_pred CCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC------ceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEe
Q 019006 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY------QITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 151 ~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~ 222 (347)
++.+ .++++...++.|.+||..+++....++... ....+++ +++.++++. .++.|.++|+.+++....+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 4554 555555588999999999887766554333 4556666 456666655 4889999999999877776
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCC----------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMD----------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
... .....+.++|+|++++++..+ +.|.++|.... +....+.... ......++|+|++++|.
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----~v~~~~~~~~---g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----TVEKQFKFKL---GDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----EEEEEEECCT---TCCCEEEEECTTSCEEE
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----eEEEEEecCC---CCCceeEEEecCCCEEE
Confidence 543 335788999999977777654 78999997642 2333332111 12467899999999998
Q ss_pred EeeCCCeEEEEeCCCceeeE--EecCCccCeeeEEEcC-CCCEEEEe----cCCCcEEeecC
Q 019006 293 AGSSDRMVYIWDTTSRRILY--KLPGHTGSVNESVFHA-TEPVIGSC----SSDKQIYLGEI 347 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~-~~~~l~s~----s~D~~i~i~~~ 347 (347)
++.. .|++||..++++.. .+..+......++++| ++.+.++. ..++.|.+||.
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 8765 89999998887642 1222245688999999 66777776 67889999873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-13 Score=127.84 Aligned_cols=282 Identities=13% Similarity=0.111 Sum_probs=190.3
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeCcccceeEEEEc----CCCCEEEEecC-CCeEEEEECCC
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWT----TDGSQIISASP-DKTLRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~~~-dg~i~iwd~~~ 131 (347)
..++.+.|+|+|++|++++.|+.|.+||+. ...+....+... .....++|+ |||++++++.. ++++.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356789999999999999999999999984 223334444432 235789999 69998887764 58999999999
Q ss_pred CceeeeeeccC----------c-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc--eeecCCCCceEEEEEcCCCCe
Q 019006 132 GKQIKKMAEHN----------S-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA--IQTFPDKYQITAVSFSDASDK 198 (347)
Q Consensus 132 ~~~~~~~~~~~----------~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~ 198 (347)
.+.+..+.... . .+..+..++.++.++++...+|.|.++|...... +..+........+.|+|++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 88877654321 1 3344555555566777777889999999875432 223333445667899999998
Q ss_pred EEEEe-cCCcEEEEeCCCCceEEEecC-----CCCceeEEE-ECCCCC-EEEEEc-CCCcEEEEeCCCCCC---cCceeE
Q 019006 199 IYTGG-IDNDVKVWDLRKGEVSMTLQG-----HQDMITGMS-LSPDGS-YLLTNG-MDCKLCIWDMRPYAP---QNRCVK 266 (347)
Q Consensus 199 l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~v~-~~~~~~-~l~t~~-~d~~i~~wd~~~~~~---~~~~~~ 266 (347)
++++. .+++|.++|+.+++....+.- |.. ..+. ++|++. ..+++. .++.|.++|..+... ..+.++
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 87665 678999999999987665543 221 2233 578744 444543 468999999875221 134455
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeC-------CCeEEEEeCCCc-----eee-EEec--------CCccCeeeEE
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-------DRMVYIWDTTSR-----RIL-YKLP--------GHTGSVNESV 325 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-------dg~i~vwd~~~~-----~~~-~~~~--------~h~~~v~~~~ 325 (347)
.+.... ..-.-+..+|++++|.+... .+.|.+||..+. ... ..++ .-...+..+.
T Consensus 434 ~i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (567)
T 1qks_A 434 SFPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE 509 (567)
T ss_dssp EEECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred EEecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence 554431 11123457999999988663 459999998876 211 2332 1245789999
Q ss_pred EcCCCCEEEEe--c---CCCcEEeec
Q 019006 326 FHATEPVIGSC--S---SDKQIYLGE 346 (347)
Q Consensus 326 ~~~~~~~l~s~--s---~D~~i~i~~ 346 (347)
|+|+++.+..+ + .++.|.|.|
T Consensus 510 ~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 510 FNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp ECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 99999866544 2 367787765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-14 Score=118.97 Aligned_cols=240 Identities=9% Similarity=0.027 Sum_probs=165.0
Q ss_pred cEEEEEECCCCCeEE-EeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 59 AVYTMKFNPAGTVIA-SGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
...+++++++|.+++ +...++.|.+|+..+.... .....+...+.+++++++++.+++.. ++.|.+||....... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 678999999999877 5577889999987432211 11122334678899999998666666 889999998765432 2
Q ss_pred ee-ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 138 MA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 138 ~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
+. ........++..+.+ .++++...++.|.+|+..+....... .....+..++++++++.+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 222445566666654 57777777889999986554333222 2223577899999988666666778999999876
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.........+...+.+++++++|+.+++...++.|.+||..... ....... ....+..++++++|.++++..
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~-----~~~~~~~---~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-----STVLPFT---GLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC-----CEECCCC---SCSCEEEEEECTTCCEEEEEG
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc-----ceeeccC---CCCCceeEEECCCCCEEEEEC
Confidence 65444333333568899999999888887778899999975321 1111110 013578899999999888999
Q ss_pred CCCeEEEEeCCCcee
Q 019006 296 SDRMVYIWDTTSRRI 310 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~ 310 (347)
.++.|++|+....+.
T Consensus 253 ~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 253 GNDRVVKLTSLEHHH 267 (270)
T ss_dssp GGTEEEEECCCGGGS
T ss_pred CCCEEEEEcCCCccc
Confidence 999999999877654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-13 Score=118.52 Aligned_cols=240 Identities=10% Similarity=0.087 Sum_probs=159.5
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC----CeEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD----KTLR 125 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~ 125 (347)
...+.++...+.+++|+|+|++++++..++.|++|+..+.. .......+...+.+++|+++++++++...+ +.|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 34566777788999999999988888899999999986432 222223556789999999999988877666 6899
Q ss_pred EEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcC------CCceEEEeCCCCCceeecCCCCceEEEEEcCCCC
Q 019006 126 AWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 126 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (347)
+||..+++....+. .....+..+.+.+.+ .++++... .+.|..+|..++...........+..++|+|+++
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 99988766432222 223456667777765 45555443 2456666655444332222223578899999998
Q ss_pred eEEE-EecCCcEEEEeCCC-CceEE--------EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 198 KIYT-GGIDNDVKVWDLRK-GEVSM--------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 198 ~l~~-~~~dg~i~iwd~~~-~~~~~--------~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
.++. .+.++.|++||+.+ +.... .+.++ ..+..++++++|+.+++...++.|.+||.. ...+..
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-----g~~~~~ 268 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-----GYPIGQ 268 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-----SCEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-----CCEEEE
Confidence 6654 45678999999863 32221 12222 357889999999988888778899999863 223333
Q ss_pred Eecccc--ccccceEEEEECCCCCEEEEeeCC
Q 019006 268 LEGHQH--NFEKNLLKCGWSPDGSKVTAGSSD 297 (347)
Q Consensus 268 ~~~~~~--~~~~~~~~~~~s~~g~~l~sgs~d 297 (347)
+..... .....+..++|+||+..|+.++.+
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 332211 000146788899998887766655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-13 Score=126.30 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=185.5
Q ss_pred CCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC--CCceeeeeeccCcc
Q 019006 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE--TGKQIKKMAEHNSF 144 (347)
Q Consensus 67 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 144 (347)
|.+.++++...++.|.++|.... +....+.. ...+..+.|+|||+++++++.|+.|.+||+. +.+.+.++.... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~-~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY-EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC-CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCC-eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 44567778888999999998643 33334432 2356789999999999999999999999996 777777665433 3
Q ss_pred eeEeecC----CCCCCEEEEEcCCCceEEEeCCCCCceeecCC------------CCceEEEEEcCCCCeEE-EEecCCc
Q 019006 145 VNSCCPS----RRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD------------KYQITAVSFSDASDKIY-TGGIDND 207 (347)
Q Consensus 145 v~~~~~~----~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~-~~~~dg~ 207 (347)
...+.++ +++..++++...++++.++|..+.+.+..++. ...+..+..++++..++ ....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 4456777 46666666677779999999988887766542 12567788888766544 4556789
Q ss_pred EEEEeCCCCce--EEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEec-cccccccceEEEE
Q 019006 208 VKVWDLRKGEV--SMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEG-HQHNFEKNLLKCG 283 (347)
Q Consensus 208 i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 283 (347)
|.++|....+. ...+. ......++.|+|++++++++. .++.|.++|+... +....+.. ........... -
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~----kl~~~i~vgg~~Phpg~g~~-~ 395 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPGRGAN-F 395 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCTTCEE-E
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC----cEEEEEeccCcCCCCcccee-e
Confidence 99999876532 22222 234567899999999987655 5789999998743 33333332 11111111112 1
Q ss_pred ECCCCCEE-EEee-CCCeEEEEeCCC-------ceeeEEecCCccCeeeEEEcCCCCEEEEecC-------CCcEEeecC
Q 019006 284 WSPDGSKV-TAGS-SDRMVYIWDTTS-------RRILYKLPGHTGSVNESVFHATEPVIGSCSS-------DKQIYLGEI 347 (347)
Q Consensus 284 ~s~~g~~l-~sgs-~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------D~~i~i~~~ 347 (347)
++|++..+ +++. .++.|.++|..+ .+.+.+++.....-..++.||+++++..... ..+|.++|+
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 57875544 4443 568999999987 5677888766555566889999987765442 357888764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=126.88 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=153.0
Q ss_pred ccEEEEEECCCCCeEEEeeCC---Cc--EEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC-----------
Q 019006 58 SAVYTMKFNPAGTVIASGSHD---RD--IFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD----------- 121 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d---~~--v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----------- 121 (347)
..+..++|+|+|+.||..+.+ +. |++|++.+. .. ..+..+.. +..+.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~-~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SS-KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EE-EEEEEESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ce-EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 457789999999999887754 33 777777542 22 22333333 8999999999998887632
Q ss_pred ----------------CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-------ceEEEeCCCCCce
Q 019006 122 ----------------KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-------TAKLWDMRQRGAI 178 (347)
Q Consensus 122 ----------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-------~i~iwd~~~~~~~ 178 (347)
..|.+||+.+++.+..+.. . .+..+.+++++ +++++..+. ...+|.+.++...
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEE 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceE
Confidence 5689999988776344444 3 56667777766 666665542 3445544333322
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecC--------CcEEEEeCCCCceEEEecCCCCceeE-EEECCCCCEEEEEcCCCc
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGID--------NDVKVWDLRKGEVSMTLQGHQDMITG-MSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-v~~~~~~~~l~t~~~d~~ 249 (347)
....+ ..+.. ++|+++.++.++.+ ..|++|| +++.......+...+.. +.|+ ++ .+++++.++.
T Consensus 212 ~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 212 KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 22222 33443 38999988876644 3688888 55554444556667886 8999 88 8889999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeE-EEEeCCCceeeEEecCCccCe
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV-YIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i-~vwd~~~~~~~~~~~~h~~~v 321 (347)
++|| +.. ........ + ...+..++|+| .++++++.++.. .+|.+. ++ ..++..|...+
T Consensus 285 ~~l~-~~~----g~~~~~~~-~----~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 285 VNLY-IWD----GEIKPIAK-G----RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp EEEE-EES----SSEEEEEC-S----SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred EEEE-EcC----CceEEEec-C----CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 9999 862 22222222 1 34578889999 677777776654 666555 44 45666665543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-14 Score=121.52 Aligned_cols=253 Identities=11% Similarity=0.022 Sum_probs=171.9
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
....+.+. .+.++++...++.|.+||.... +....+. .......+++++++...++...++.|.+||..+++....+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~-~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTF-KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTC-CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECccc-EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 45667763 4556666777899999998633 3334443 2356788999888854444448999999999998877666
Q ss_pred eccC-----cceeEeecCCCCCCEEEEEc-CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-------
Q 019006 139 AEHN-----SFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID------- 205 (347)
Q Consensus 139 ~~~~-----~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 205 (347)
.... .....++. .+..++++.. .+++|.++|+.+++.+..++.......+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 5332 02223333 3344555554 4889999999988877777655566788999998866665544
Q ss_pred ---CcEEEEeCCCCceEEEecCC-CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEE
Q 019006 206 ---NDVKVWDLRKGEVSMTLQGH-QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLK 281 (347)
Q Consensus 206 ---g~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (347)
+.|.++|..+++....+... ......++|+|++++|+++.. .|.+||....+.... ..+... ......
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~----~~~p~g 271 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR--PFLEFR----DTKYYG 271 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS--CSBCCC----SSCEEE
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee--eeecCC----CCceEE
Confidence 78999999988876665432 235789999999999888765 899999865332111 011100 235778
Q ss_pred EEECC-CCCEEEEe----eCCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 282 CGWSP-DGSKVTAG----SSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 282 ~~~s~-~g~~l~sg----s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
++++| ++.+.++. ..++.|.+||.. ++.+.+++. ......++|
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 89999 55555666 678999999998 888877753 223355555
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=138.59 Aligned_cols=272 Identities=11% Similarity=0.025 Sum_probs=172.3
Q ss_pred CCCCeEEEeeCCC---cEEEEeccC-CCeeeEEE------eCcccceeEEEEcCCCCEEE-----EecCCCeEEEEECCC
Q 019006 67 PAGTVIASGSHDR---DIFLWHVHG-DCKNFMVL------KGHKNAILDLHWTTDGSQII-----SASPDKTLRAWDVET 131 (347)
Q Consensus 67 ~~~~~l~s~~~d~---~v~~w~~~~-~~~~~~~~------~~h~~~v~~~~~~~~~~~l~-----s~~~dg~i~iwd~~~ 131 (347)
|+|..++-...++ .-.+|.... .......+ .+|...+..++|||||++|+ .|+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788777665543 244554431 11111222 24555789999999999998 444567899999999
Q ss_pred Ccee-eeeeccCcceeEeecCCCCCCEEEEEcCCCc-------------eEEEeCCCCCc----eeecCC-CCceEEEEE
Q 019006 132 GKQI-KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT-------------AKLWDMRQRGA----IQTFPD-KYQITAVSF 192 (347)
Q Consensus 132 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~-------------i~iwd~~~~~~----~~~~~~-~~~v~~~~~ 192 (347)
++.+ ...... .....+.+++++. .|+.++.|.. |++|++.++.. +...+. ...+..+.|
T Consensus 157 g~~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 157 GEWSKVDVIEG-GKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp CCBCSSCCBSC-CTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCcCCcccCc-ccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 8764 211111 1114566777764 5666666665 99999987652 222222 246789999
Q ss_pred cCCCCeEEEEecCC----cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCcee
Q 019006 193 SDASDKIYTGGIDN----DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 193 ~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~ 265 (347)
+|++++++..+.++ .|+++|..+++. ..+..+...+....+ +++..++... .++.|.+||+..... ....
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~ 311 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR-ASWK 311 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG-GGCE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc-cCCe
Confidence 99999998877665 678887655543 334444455566666 5666444444 257899999864321 0112
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC-CceeeEEecCC-ccCeeeEEEcCCCCEEE----EecCC
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT-SRRILYKLPGH-TGSVNESVFHATEPVIG----SCSSD 339 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~l~----s~s~D 339 (347)
..+..+. ...+..++|+ ++.++++...|+..+||... .+..+..+..+ .+.+..++++|+++.++ +....
T Consensus 312 ~l~~~~~---~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 387 (695)
T 2bkl_A 312 EIVPEDS---SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTP 387 (695)
T ss_dssp EEECCCS---SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEE
T ss_pred EEecCCC---CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 2222211 2345667777 77788899999988887554 35556667665 66788899999998777 44456
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
++|++||+
T Consensus 388 ~~v~~~d~ 395 (695)
T 2bkl_A 388 RQIYKTSV 395 (695)
T ss_dssp EEEEEEET
T ss_pred CEEEEEEC
Confidence 88998874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-14 Score=118.48 Aligned_cols=211 Identities=10% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--Cce
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--YQI 187 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v 187 (347)
.++.|++++.|+.|.+||.++++.+.++..+. ..+..+...+++ .+++ +.++.+..||. +++.+..+... ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 45789999999999999999999998887665 355666666665 5666 45788999998 67777776543 478
Q ss_pred EEEEEcCCCCeEEEEec-CCcEEEEeCCCCceEEEec------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC
Q 019006 188 TAVSFSDASDKIYTGGI-DNDVKVWDLRKGEVSMTLQ------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
.++.+.++++.+++.+. ++.|..+|. .++.+.++. .+......+++.++|+++++...++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT----
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC----
Confidence 88999999999998877 778888885 677665543 122245567889999999999999999999965
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCc------cCeeeEEEcCCCCEEE
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT------GSVNESVFHATEPVIG 334 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~ 334 (347)
++.+..+... .....+...++|..+++++.++.|..+|..+++.+.++..+. ..+..+...+++.+++
T Consensus 155 -G~~~w~~~~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 155 -GQLLNSVKLS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -SCEEEEEECS-----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -CCEEEEEECC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 2334444432 234456678999999999999999999999999999886543 1267888899998888
Q ss_pred Ee
Q 019006 335 SC 336 (347)
Q Consensus 335 s~ 336 (347)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 77
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-15 Score=131.87 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCccee-EeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 103 ILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVN-SCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
+..++|+|+|++|+.+..+ ..|.+||+.+++... +..+..... ...+++++ ..++..+.++.+++||+.++...
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcE
Confidence 6778899999998776443 468888988876533 322222222 24456665 46667777889999999877654
Q ss_pred eecCCC-CceEE-------------------EEEcCCCCeEEEE-----ecCCcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 179 QTFPDK-YQITA-------------------VSFSDASDKIYTG-----GIDNDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 179 ~~~~~~-~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
...... ..... ..++|+++.++.. ..+..|++||+.+++..... .+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 433321 11111 2456777766543 35568999999887754443 4556788999
Q ss_pred ECC-CCCEEEEEcCC------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEE
Q 019006 234 LSP-DGSYLLTNGMD------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVY 301 (347)
Q Consensus 234 ~~~-~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~ 301 (347)
|+| +++.|+..+.+ ..|.+||+.... ...+..+. ....+..++|+|||++|+.++.+ +.|+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHA--EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCC--TTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccC--CCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999 78877665543 368888875321 11121111 01246778999999988777543 4599
Q ss_pred EEeCCCceeeEEecCCccCeeeEEEcC-CCCEEEEec----------------CCCcEEeecC
Q 019006 302 IWDTTSRRILYKLPGHTGSVNESVFHA-TEPVIGSCS----------------SDKQIYLGEI 347 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s----------------~D~~i~i~~~ 347 (347)
+||+.+++...... ..+ .. +.|+| +++++++++ .+..|++||+
T Consensus 268 ~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 268 KANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 99998876543221 111 22 88999 999888765 3467888874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-13 Score=113.08 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=171.6
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcc-cceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccC-cce
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK-NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHN-SFV 145 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v 145 (347)
.+++|++++.|+.|++||.. +.+....+..+. ..+.++.++|+|++++ +.++.|..||. +++.+.++.... ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 46889999999999999984 234555666655 4688999999999888 35788999998 788888887642 355
Q ss_pred eEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceeecCC-------CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc
Q 019006 146 NSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQTFPD-------KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE 217 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 217 (347)
..+.+.+++ .++++.+. ++++..+|. .++.+..+.. ......+.+.++++++++...++.|..||.. ++
T Consensus 80 ~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 566666665 46666665 677777775 4554444321 1124456778899999999999999999987 99
Q ss_pred eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc--cccceEEEEECCCCCEEEEee
Q 019006 218 VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN--FEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 218 ~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sgs 295 (347)
.+.++... ....++.+.++++.++++..++.|..+|..+ ++.+..+...... ....+..++..++|..+++.+
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t----G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLES----NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTT----CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcC----CcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 88888764 3466788889999999988888999999764 3344444322110 112366778889999998874
Q ss_pred CC--------CeEEEEeC-CCceeeEEecCCc--cCeeeE
Q 019006 296 SD--------RMVYIWDT-TSRRILYKLPGHT--GSVNES 324 (347)
Q Consensus 296 ~d--------g~i~vwd~-~~~~~~~~~~~h~--~~v~~~ 324 (347)
.. +..+++.+ .+++++.++..+. +.+..+
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 21 23355555 4778887776554 344443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-13 Score=131.63 Aligned_cols=270 Identities=13% Similarity=0.035 Sum_probs=167.6
Q ss_pred CCCCeEEEeeCCCc---EEEEeccCC----CeeeEEE------eCcccceeEEEEcCCCCEEEEecCC-----CeEEEEE
Q 019006 67 PAGTVIASGSHDRD---IFLWHVHGD----CKNFMVL------KGHKNAILDLHWTTDGSQIISASPD-----KTLRAWD 128 (347)
Q Consensus 67 ~~~~~l~s~~~d~~---v~~w~~~~~----~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd 128 (347)
|+|+.++-...++. -.+|..... ......+ .+|...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78988776655443 455654321 1111111 2344468889999999999876543 4699999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--------------ceEEEeCCCCCc--eeecC--CC-CceEE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--------------TAKLWDMRQRGA--IQTFP--DK-YQITA 189 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--------------~i~iwd~~~~~~--~~~~~--~~-~~v~~ 189 (347)
+.+++.+.... +...+..+.++++ .. |+.++.++ .|++|++.++.. ...+. .. ..+..
T Consensus 196 l~tg~~~~~~~-~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKPLADEL-KWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCEEEEEE-EEEESCCCEESTT-SE-EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCCCccC-CCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99987654321 1122234667776 44 44444444 388899876542 12222 21 24788
Q ss_pred EEEcCCCCeEEEEecCC-----cEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEcCC----CcEEEEeCCCC
Q 019006 190 VSFSDASDKIYTGGIDN-----DVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNGMD----CKLCIWDMRPY 258 (347)
Q Consensus 190 ~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d----~~i~~wd~~~~ 258 (347)
+.|+|++++++..+.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||+...
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999888776543 7999999876 31344544544455443 4888888877653 45999998642
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC-CceeeEEecCC-ccCeeeEEEcCCCCEEE--
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT-SRRILYKLPGH-TGSVNESVFHATEPVIG-- 334 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~l~-- 334 (347)
. ......+..+ ...+..++|+ ++.++++...|+..+||... .+..+..+..+ .+.+..+.++|+++.++
T Consensus 352 ~--~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 352 T--PRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp S--CEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred c--cccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 1 1222333322 1235566676 56778888889887776543 35556666653 66788999999988666
Q ss_pred --EecCCCcEEeecC
Q 019006 335 --SCSSDKQIYLGEI 347 (347)
Q Consensus 335 --s~s~D~~i~i~~~ 347 (347)
+....++|++||+
T Consensus 425 ~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 425 FSSFTQPATVLALDP 439 (741)
T ss_dssp EEETTEEEEEEEEET
T ss_pred EcCCCCCCEEEEEEC
Confidence 3345578888874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-12 Score=112.62 Aligned_cols=240 Identities=11% Similarity=0.113 Sum_probs=160.7
Q ss_pred ccceeEEEEcCCCCEEEE-------ecCCCeEEEEECCCCceeeeeec-----cCcceeEeecCCCCCCEEEEEcCCCce
Q 019006 100 KNAILDLHWTTDGSQIIS-------ASPDKTLRAWDVETGKQIKKMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTA 167 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d~~i 167 (347)
-....+++|++++..+++ ...++.|.+||..+++... +.. +...+..+++.+++..++++.. .+.|
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 345678999999988877 5778999999987776532 222 3344566666665234555443 4478
Q ss_pred EEEeCCCCCceee-cCC-----CCceEEEEEcCCCCeEEEEecC---------------CcEEEEeCCCCceEEEecCCC
Q 019006 168 KLWDMRQRGAIQT-FPD-----KYQITAVSFSDASDKIYTGGID---------------NDVKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 168 ~iwd~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~ 226 (347)
.+||.. ++.... ... ...+..+++++++...++...+ +.|..||.. ++.... ..+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCC
Confidence 899987 544322 211 1347899999998877666554 567888765 543332 2233
Q ss_pred CceeEEEEC----CCCCEEEEE-cCCCcEEEEeCCC-CCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCe
Q 019006 227 DMITGMSLS----PDGSYLLTN-GMDCKLCIWDMRP-YAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM 299 (347)
Q Consensus 227 ~~i~~v~~~----~~~~~l~t~-~~d~~i~~wd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~ 299 (347)
.....++|+ |+++.++.+ ..++.|.+||... ..... .....+..+. ......++++++|.++++...++.
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH---EGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS---SCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC---CCCCCceEECCCCCEEEEEcCCCE
Confidence 446889999 998765544 5678999999752 11000 0111111110 034667889999999988888899
Q ss_pred EEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeecC
Q 019006 300 VYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~~ 347 (347)
|.+||..+++.+..+..+...+..++|+|++. +.++...++.|..+++
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 99999987877777777778899999999998 6666667788888763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-11 Score=108.53 Aligned_cols=271 Identities=8% Similarity=-0.030 Sum_probs=173.8
Q ss_pred CCCCCeEEEeeC--CC---cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECC
Q 019006 66 NPAGTVIASGSH--DR---DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVE 130 (347)
Q Consensus 66 ~~~~~~l~s~~~--d~---~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~ 130 (347)
.|+++.+.+... .. .|.++|... .+....+.....+ .++++||+++++.+. .++.|.+||..
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 356666655543 22 788998853 3333444433333 899999999998875 36789999999
Q ss_pred CCceeeeeecc-------CcceeEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceee-cCCCCceEEEEEcCCC-CeEE
Q 019006 131 TGKQIKKMAEH-------NSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDAS-DKIY 200 (347)
Q Consensus 131 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~ 200 (347)
+.+.+..+... ......+.+++++..++++... ++.|.++| .+++.+.. ++.... +.+.+++ ..++
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~ 181 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFY 181 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEE
Confidence 88777665432 1223356677777655554433 58899999 98888777 655432 3444554 3456
Q ss_pred EEecCCcEEEEeCCCCceEEEec-----CCCCc-eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQ-----GHQDM-ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-- 272 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-- 272 (347)
+.+.||.+.++|. +++...... ....+ .....+.+++..++..+.++.+.+.|+..... .....+....
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~v~~~~~~~~~~ 258 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--TNKAPIDALSGG 258 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--eEeeeeeecCCc
Confidence 6778999999999 776553221 11111 12245566655544445678899999863211 1111111000
Q ss_pred ---cc-cccceEEEEECCCCCEEEEeeC----------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEec
Q 019006 273 ---HN-FEKNLLKCGWSPDGSKVTAGSS----------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCS 337 (347)
Q Consensus 273 ---~~-~~~~~~~~~~s~~g~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s 337 (347)
.. .......+.++||++.|+++.. ++.|.++|..+++.+.+++. ......++|+|+++ ++.++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence 00 0112334678999998887653 35899999999999988863 33689999999999 777776
Q ss_pred -CCCcEEeecC
Q 019006 338 -SDKQIYLGEI 347 (347)
Q Consensus 338 -~D~~i~i~~~ 347 (347)
.++.|.++|.
T Consensus 338 ~~~~~V~ViD~ 348 (373)
T 2mad_H 338 AGTEVLHIYDA 348 (373)
T ss_pred CCCCeEEEEEC
Confidence 5899999874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=131.14 Aligned_cols=244 Identities=11% Similarity=0.097 Sum_probs=153.1
Q ss_pred CccccEEEEEECCCCCeEEEeeCC-----CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe------
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHD-----RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT------ 123 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~------ 123 (347)
+|...+..++|||||++||.++.+ ..|++||+.+... .....+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EEEEEEEEESCCCEESTT-SEEEEEECCCC------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CCccCCCceeccEEEECC-CEEEEEEecCccccccc
Confidence 454578899999999998876554 4599999965432 112112222357899999 98888876654
Q ss_pred --------EEEEECCCCce----eeeeeccCcceeEeecCCCCCCEEEEEcC----CCceEEEeCCCC--C-ceeecCCC
Q 019006 124 --------LRAWDVETGKQ----IKKMAEHNSFVNSCCPSRRGPPLVVSGSD----DGTAKLWDMRQR--G-AIQTFPDK 184 (347)
Q Consensus 124 --------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~----d~~i~iwd~~~~--~-~~~~~~~~ 184 (347)
|++|++.++.. +.....+...+....+++++..++++... ...|.+||+.++ . ........
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 88999877652 22222222346677788877655544432 347899998765 3 33333333
Q ss_pred CceEEEEEcCCCCeEEEEecC----CcEEEEeCCCC--ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 185 YQITAVSFSDASDKIYTGGID----NDVKVWDLRKG--EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
...... ++++++.|+..+.+ +.|.+||+.++ .....+..+...+..+++. ++..+++...|+..+||.+..
T Consensus 317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~- 393 (741)
T 1yr2_A 317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL- 393 (741)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-
Confidence 233333 34788888877653 45999998874 3334445555567778887 566778888888877776542
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEe----eCCCeEEEEeCCCce
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG----SSDRMVYIWDTTSRR 309 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg----s~dg~i~vwd~~~~~ 309 (347)
.......+... ....+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 394 --~g~~~~~l~~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 394 --DGKPAGAVSLP---GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --TSCEEEECBCS---SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --CCCceeeccCC---CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 12222333211 12457778899999866632 234789999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-11 Score=103.71 Aligned_cols=236 Identities=11% Similarity=0.004 Sum_probs=165.2
Q ss_pred CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
.+...+.+++++++|+.+++...++.|.+||.. ++.. .+. .....+..++..+.+ .++++...++.|..||....
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCc
Confidence 444678999999999988877778999999987 5432 222 233456666666554 56676666888999997622
Q ss_pred CceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 176 GAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 176 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
......+ ....+..+++++++..+++...++.|..||. +++... ....+...+..+++.++++..++...++.|..|
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence 1111222 3346889999998877777767889999998 554332 233344568999999999888877777899999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE-EecCCccCeeeEEEcCCCCE
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY-KLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 332 (347)
|. .. ... .+.... ....+..++++++|.+.++...++.|++||. +++... .++.+...+..+++++++.+
T Consensus 168 ~~-~g----~~~-~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 168 TE-SG----DIT-EFKIPT--PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp CT-TC----CEE-EEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred cC-CC----cEE-EeeCCC--CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCE
Confidence 87 32 111 111111 1235678899999998887777889999999 665432 34445677899999999998
Q ss_pred EEEecCCCcEEeec
Q 019006 333 IGSCSSDKQIYLGE 346 (347)
Q Consensus 333 l~s~s~D~~i~i~~ 346 (347)
.++...++.|..+|
T Consensus 239 ~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 239 WFTEWGANKIGRLT 252 (299)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEeccCCceEEEEC
Confidence 88877778888776
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-12 Score=108.74 Aligned_cols=240 Identities=12% Similarity=0.120 Sum_probs=157.1
Q ss_pred cCccccEEEEEECCCCCeEEE-------eeCCCcEEEEeccCCCeeeEEEe-----CcccceeEEEEcCC-CCEEEEecC
Q 019006 54 TGHQSAVYTMKFNPAGTVIAS-------GSHDRDIFLWHVHGDCKNFMVLK-----GHKNAILDLHWTTD-GSQIISASP 120 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s-------~~~d~~v~~w~~~~~~~~~~~~~-----~h~~~v~~~~~~~~-~~~l~s~~~ 120 (347)
.+.-....+++|+++|.++++ +..++.|.+|+..+... ..+. ++...+.+++++++ ++++++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~- 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM- 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence 344456789999999998888 67889999999643222 2222 25567899999999 66555544
Q ss_pred CCeEEEEECCCCceeee-eec----cCcceeEeecCCCCCCEEEEEcCC---------------CceEEEeCCCCCceee
Q 019006 121 DKTLRAWDVETGKQIKK-MAE----HNSFVNSCCPSRRGPPLVVSGSDD---------------GTAKLWDMRQRGAIQT 180 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~s~~~d---------------~~i~iwd~~~~~~~~~ 180 (347)
+..|.+||.+ ++.... ... ....+..+++.+.+ .+.++...+ +.|..+|.. +.....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 4478899988 654322 111 11235567776655 466655444 466677765 333322
Q ss_pred cCCCCceEEEEEc----CCCCeEEEE-ecCCcEEEEeCC-CCc-----eEEEecCCC-CceeEEEECCCCCEEEEEcCCC
Q 019006 181 FPDKYQITAVSFS----DASDKIYTG-GIDNDVKVWDLR-KGE-----VSMTLQGHQ-DMITGMSLSPDGSYLLTNGMDC 248 (347)
Q Consensus 181 ~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~i~~v~~~~~~~~l~t~~~d~ 248 (347)
.........++++ ++++.++.+ ..++.|.+||.. .++ ....+..+. ..+..++++++|+.+++...++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2222346788899 988766655 567899999976 343 222334443 5678899999999888887788
Q ss_pred cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCC
Q 019006 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTS 307 (347)
Q Consensus 249 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~ 307 (347)
.|.+||.... .....+..+ ...+..++|+|+|+.|. +...++.|..|++..
T Consensus 248 ~i~~~d~~~g----~~~~~~~~~----~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGG----QPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCB----SCSEEEECS----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCC----cEeEEEeCC----CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999997632 222233222 14578899999999554 555678999999864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-11 Score=106.32 Aligned_cols=237 Identities=8% Similarity=-0.042 Sum_probs=156.2
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEeCc-------ccceeEEEEcCCCCEEEEecC--CC
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLKGH-------KNAILDLHWTTDGSQIISASP--DK 122 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg 122 (347)
.+.++|+|+.|+++. .++.|.+||... .+....+.-. ...-..+.|+|||++|+.+.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 889999999998875 367899999853 2222222111 122357899999999998874 47
Q ss_pred eEEEEECCCCceeee-eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC------CCCc-eEEEEEcC
Q 019006 123 TLRAWDVETGKQIKK-MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP------DKYQ-ITAVSFSD 194 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~------~~~~-v~~~~~~~ 194 (347)
.|.++| .+++.+.. +..... ....+.+...+++.+.||++.++|. +++...... .... .....+.+
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 899999 99887766 533221 2223444556777889999999999 666552211 1111 12234556
Q ss_pred CCCeEEEEecCCcEEEEeCCCCce--EEEecCC----------CCceeEEEECCCCCEEEEEcC----------CCcEEE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEV--SMTLQGH----------QDMITGMSLSPDGSYLLTNGM----------DCKLCI 252 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~----------~~~i~~v~~~~~~~~l~t~~~----------d~~i~~ 252 (347)
++..++..+..+.+.+.|+..... ...+... ......+.++|+++.++.... .+.|.+
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 666555555778999999865432 1222110 122334788999888777543 357999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEee-CCCeEEEEeCCCceeeEEe
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGS-SDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 314 (347)
+|.... +.+..+.. ......++|+|||+ +++++. .++.|.+||..+++.+.++
T Consensus 303 ID~~t~----~vv~~i~~-----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVG----QTSSQISL-----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCC----EEEEEEEC-----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 998743 33444432 12467889999999 777776 5899999999999988774
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=122.45 Aligned_cols=172 Identities=10% Similarity=0.132 Sum_probs=132.2
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCC----------CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGD----------CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.++.+++++...++++|+.++. ++|++..- ..... ...+.. |+.++| ++..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 5888999999999999999854 45986421 11112 223556 999999 88999988 889999999
Q ss_pred CCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 129 VETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
+.+.........+...+..+.+.+. .+++++.||.+.+||++.+.... ....|++++|+|.| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9876655555556666666665543 27788999999999999776543 23479999999998 7889999999
Q ss_pred EEEeCCCCce--EEEe------c---CCCCceeEEEECCCCCEEEEE
Q 019006 209 KVWDLRKGEV--SMTL------Q---GHQDMITGMSLSPDGSYLLTN 244 (347)
Q Consensus 209 ~iwd~~~~~~--~~~~------~---~~~~~i~~v~~~~~~~~l~t~ 244 (347)
++|+...++. ..++ . +|...|.+|.|.+++.++++-
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999887765 5555 2 367789999999999988874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-12 Score=111.15 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=162.7
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEe-Cc------ccceeEEEEcCCCCEEEEecC--CC
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLK-GH------KNAILDLHWTTDGSQIISASP--DK 122 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~-~h------~~~v~~~~~~~~~~~l~s~~~--dg 122 (347)
.++++|+|+.|+++. .++.|.+||.... +....+. +. ...-..++++|||++++.+.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 399999999887765 3678999998643 3333332 11 123456899999999888764 68
Q ss_pred eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-CCceeecCC-----CCce-EEEEEc-C
Q 019006 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-RGAIQTFPD-----KYQI-TAVSFS-D 194 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~-----~~~v-~~~~~~-~ 194 (347)
.|.++|+.+++.+.++..... . ...+.+...+++.+.||++.+.++.. ++....... ...+ ....|. +
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~--~--~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC--Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 236 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE--E--EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred eEEEEECCCCcEEEEEECCCc--c--eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence 999999999998887754321 1 11233445667788899999999875 443221111 1111 123554 5
Q ss_pred CCCeEEEEecCCcEEEEeCCCCce--EEEec---------C-CCCceeEEEECCCCCEEEEEcC----------CCcEEE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEV--SMTLQ---------G-HQDMITGMSLSPDGSYLLTNGM----------DCKLCI 252 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------~-~~~~i~~v~~~~~~~~l~t~~~----------d~~i~~ 252 (347)
++..++ .+.+|.|++.|+..... ...+. + .......++++++++.++.... .++|.+
T Consensus 237 dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 237 AGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 554444 66689999999976542 22221 0 1123345788999888877642 257899
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
.|+... +.++.+.. ...+..+++++|++ +|++. ..++.|.++|..+++.+.+++.- +.-+.+.+++|
T Consensus 316 iD~~t~----kv~~~i~v-----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 316 LDAKTG----ERLAKFEM-----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTC----CEEEEEEE-----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EECCCC----eEEEEEEC-----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 998753 33343322 23577899999997 66664 55899999999999999887532 33455666665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-12 Score=109.05 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=177.0
Q ss_pred EECCCCCeEEEeeC-----CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEE
Q 019006 64 KFNPAGTVIASGSH-----DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWD 128 (347)
Q Consensus 64 ~~~~~~~~l~s~~~-----d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd 128 (347)
...|+++.+.+... ++.|.+.|... .+....+..-..+ .++++|||++++.+. .++.|.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 34688887777765 67899999854 3444444433333 499999999988775 367899999
Q ss_pred CCCCceeeeeeccC-------cceeEeecCCCCCCEEEEEc-CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 129 VETGKQIKKMAEHN-------SFVNSCCPSRRGPPLVVSGS-DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 129 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
..+.+.+..+.... .....+.+++++..++++.. .++.|.++|+.+++.+..++.... ...+......++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~ 193 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF 193 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence 99998887775321 12334667777765555543 378999999999998887754332 122322345677
Q ss_pred EEecCCcEEEEeCCC-CceEEEecCCC----Ccee-EEEE-CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc-
Q 019006 201 TGGIDNDVKVWDLRK-GEVSMTLQGHQ----DMIT-GMSL-SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ- 272 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~i~-~v~~-~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~- 272 (347)
+.+.||++.+.++.. ++.......+. ..+. ...| .++|++++ .+.+|.+.+.|+..... .....+.-..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~ 270 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--KFLPAVEALTE 270 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--EECCCEESSCH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--eeecceecccc
Confidence 888899999999876 55432221111 1221 2355 36776555 45578999999864221 1111111000
Q ss_pred ----cc-cccceEEEEECCCCCEEEEeeC----------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEE-E
Q 019006 273 ----HN-FEKNLLKCGWSPDGSKVTAGSS----------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIG-S 335 (347)
Q Consensus 273 ----~~-~~~~~~~~~~s~~g~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~-s 335 (347)
.. .......++++|+++.|+.... .+.|.++|+.+++.+.+++- ...++.++|+++++ +|. +
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEE
Confidence 00 0112223567899998887642 25799999999999988763 23688999999986 444 4
Q ss_pred ecCCCcEEeecC
Q 019006 336 CSSDKQIYLGEI 347 (347)
Q Consensus 336 ~s~D~~i~i~~~ 347 (347)
...++.|.+.|.
T Consensus 350 n~~~~~VsViD~ 361 (386)
T 3sjl_D 350 STGDKTLYIHDA 361 (386)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEEC
Confidence 566899998873
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-11 Score=109.26 Aligned_cols=235 Identities=10% Similarity=0.026 Sum_probs=159.8
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCcee
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQ 179 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~ 179 (347)
....|+|+++++++++...++.|++||..++........ ..... +++.+.+. .++.+..++ .|.+++...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCceeE
Confidence 567899999998778877889999999987765433332 22223 56666654 555666555 78888876554433
Q ss_pred ec----C-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE----ecCCCCce-e-EEEECCC-CCEEEEEcCC
Q 019006 180 TF----P-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT----LQGHQDMI-T-GMSLSPD-GSYLLTNGMD 247 (347)
Q Consensus 180 ~~----~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i-~-~v~~~~~-~~~l~t~~~d 247 (347)
.+ . ....+..++++|+...|+.+..++.|+.||..++..... ..++...- . .++|+|+ +..+++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 2 335678899999767777777788999999987654332 22222222 2 8999995 5566666677
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccc--cc---------cccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEec
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQ--HN---------FEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~ 315 (347)
+.|+.||... . ...+.++. .. .-.....++++|+|.++++-+ .++.|+.|++.++.+. .+.
T Consensus 289 ~~I~~~~~~g-----~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~ 361 (409)
T 3hrp_A 289 SSVYKITPDG-----E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVA 361 (409)
T ss_dssp TEEEEECTTC-----C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEE
T ss_pred CEEEEEecCC-----C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEe
Confidence 8999998652 1 22222211 00 012467899999999888888 8999999998777643 443
Q ss_pred CC---------------ccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 316 GH---------------TGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 316 ~h---------------~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++ -.....+++++++.++++-..++.|+..+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 43 24578999999998888888888887654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-11 Score=107.40 Aligned_cols=237 Identities=12% Similarity=0.087 Sum_probs=156.7
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC--eEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK--TLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~ 135 (347)
.....|+|+++++++++...++.|++|+..+.. ....... ..... ++|+++++.|+.+..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 468899999999988888888999999986432 2222222 22334 89999999999888766 7888887765443
Q ss_pred eee----eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCCCce--E-EEEEcCCCCeEE-EEe
Q 019006 136 KKM----AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDKYQI--T-AVSFSDASDKIY-TGG 203 (347)
Q Consensus 136 ~~~----~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v--~-~~~~~~~~~~l~-~~~ 203 (347)
..+ .........+++.+.+..+++ +..++.|..||...+..... ....... . .++|+|++..|+ +-.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 113344555666665555555 66788999999876653222 1111111 2 899999655554 555
Q ss_pred cCCcEEEEeCCCCceEEEecCC---------------CCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEE
Q 019006 204 IDNDVKVWDLRKGEVSMTLQGH---------------QDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
.++.|+.|+.... ...+.++ -.....++++++|+.+++-. .++.|+.||+... . +..
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~-v~~ 359 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----Y-VST 359 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----E-EEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----E-EEE
Confidence 6788999987643 2222222 13468899999999888877 8899999996432 2 223
Q ss_pred Eeccc--cc---------cccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 268 LEGHQ--HN---------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 268 ~~~~~--~~---------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
+.++. .. .-.....++++++|.++++-..++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 32220 00 0135778899999888888888888888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.51 E-value=9.8e-11 Score=99.76 Aligned_cols=229 Identities=12% Similarity=0.080 Sum_probs=147.2
Q ss_pred ceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 102 AILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 102 ~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
-..+..|++++. .+++...++.|..||..+++. ..+ .....+..+++.+++. ++++ . +..|.+||..++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCcEEEE
Confidence 345778998554 556666789999999987654 222 2345566777777665 5544 3 56799999876654322
Q ss_pred c--C---CCCceEEEEEcCCCCeEEEEec-----------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE-E
Q 019006 181 F--P---DKYQITAVSFSDASDKIYTGGI-----------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL-T 243 (347)
Q Consensus 181 ~--~---~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-t 243 (347)
. . ....++.+.++++++..++... .+.|+.+|.. ++... +..+....+.++|+|+++.|+ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEe
Confidence 1 1 1235788999999986554422 1234444443 33222 222334568899999998765 5
Q ss_pred EcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeee
Q 019006 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNE 323 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 323 (347)
.+.++.|.+||+..........+.+.... ........++++++|.+.++...++.|.+||..+++++..+..+...+.+
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 55678999998742111100011111110 11234667889999998888888889999999999999888887778999
Q ss_pred EEEc-CCCCEE-EEecC
Q 019006 324 SVFH-ATEPVI-GSCSS 338 (347)
Q Consensus 324 ~~~~-~~~~~l-~s~s~ 338 (347)
++|. |+++.| +|...
T Consensus 246 ~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 246 CCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEESGGGCEEEEEEBC
T ss_pred EEEeCCCCCEEEEEcCC
Confidence 9998 776644 44443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=113.67 Aligned_cols=264 Identities=11% Similarity=0.072 Sum_probs=165.7
Q ss_pred ccEEEEEECCCCCeEEEee--CCCcEEEEeccCCCeeeEEE-------eCcccceeEEEEcCCCCEEEEecC-----CCe
Q 019006 58 SAVYTMKFNPAGTVIASGS--HDRDIFLWHVHGDCKNFMVL-------KGHKNAILDLHWTTDGSQIISASP-----DKT 123 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~--~d~~v~~w~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~-----dg~ 123 (347)
..+..|+++|+|+++++.. .++.+.||.+. +.. +..+ .+|-..+..++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6899999999999998853 23435666654 222 2211 134467899999999876665433 578
Q ss_pred EEEEECCCCceeeeeecc------CcceeEeecCCCCCCEEEEEc---CCCceEEEeCCCCCceeecCCCCc--eEEEEE
Q 019006 124 LRAWDVETGKQIKKMAEH------NSFVNSCCPSRRGPPLVVSGS---DDGTAKLWDMRQRGAIQTFPDKYQ--ITAVSF 192 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~~~--v~~~~~ 192 (347)
|.+||+.+++.+..+... ......+++.+.+..++++-. .++.|.+||+.+++....+..+.. .....+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999988866655432 123456666655445556655 678999999987766554432100 000223
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC-cEEEEeCCCC---CCc-Cce---
Q 019006 193 SDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC-KLCIWDMRPY---APQ-NRC--- 264 (347)
Q Consensus 193 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~-~i~~wd~~~~---~~~-~~~--- 264 (347)
.+++..+.+.+.++.++.|. ..+..|+|+|+++.|+.+..++ .+..++.... ... ...
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 33555566666777665542 1367899999999888877665 4444443210 000 000
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC-CccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG-HTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
+... ++ ......++++++|.++++...++.|.+||..+++....... +-..+..++|.+++.++++.+..+.+
T Consensus 241 ~~~~-g~----~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 241 IERY-SE----KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CEEE-EE----CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred eEec-cc----CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0111 11 11234577899999999999999999999855654332222 24568899999999988887755443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-10 Score=95.40 Aligned_cols=235 Identities=10% Similarity=0.041 Sum_probs=163.1
Q ss_pred cccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee-eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 99 HKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK-KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 99 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
....+.++++.++|+..++...++.|.+||.. ++... .+......+..++..+.+ .+.++...++.|..+|.. +..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence 34577899999999988887788999999987 54332 111222445566665544 566766667889999987 443
Q ss_pred ee-ecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE-EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 178 IQ-TFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS-MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 178 ~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
.. ..+ ....+..+++++++...++...++.|..||.. ++.. ..+......+.++++.++++..++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 21 222 23568899999988877776668899999987 5543 22333345688999999999777777678899998
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee-EEecCCccCeeeEEEcCCCCEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL-YKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l 333 (347)
.. . .... +.... ....+..++++++|.+.++....+.|.+||. +++.. ..++.+...+..+++.+++.+.
T Consensus 174 ~~-g----~~~~-~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 174 NT-G----KLEE-YPLPT--NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIW 244 (300)
T ss_dssp TT-C----CEEE-EECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred CC-C----cEEE-eeCCC--CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEE
Confidence 63 1 1111 21111 1235678889999988887777889999998 44433 3345556678999999999988
Q ss_pred EEecCCCcEEeec
Q 019006 334 GSCSSDKQIYLGE 346 (347)
Q Consensus 334 ~s~s~D~~i~i~~ 346 (347)
++...++.|..++
T Consensus 245 v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 245 FTEWGANQIGRIT 257 (300)
T ss_dssp EEETTTTEEEEEC
T ss_pred EeccCCCeEEEEC
Confidence 8877778887765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=107.97 Aligned_cols=272 Identities=11% Similarity=0.081 Sum_probs=174.9
Q ss_pred CCCCeEEEeeC-C----CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECCC
Q 019006 67 PAGTVIASGSH-D----RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVET 131 (347)
Q Consensus 67 ~~~~~l~s~~~-d----~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~ 131 (347)
|++..+.+... + +.|.++|.... +....+..-..+ .++++||+++++.+. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 46665555544 2 68999998643 444444433334 899999999888776 367899999999
Q ss_pred Cceeeeeecc-------CcceeEeecCCCCCCEEEEEcC-CCceEEEeCCCCCceeecCCCCceEEEEEcCCC-CeEEEE
Q 019006 132 GKQIKKMAEH-------NSFVNSCCPSRRGPPLVVSGSD-DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS-DKIYTG 202 (347)
Q Consensus 132 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 202 (347)
.+.+..+... ......+.+++++..++++... ++.|.+.|+.+++.+..++-... ....|++ ..+++.
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 9888776532 1223345667776655554433 68899999999988877764332 2233333 455667
Q ss_pred ecCCcEEEEeCCCCceEEE----ecCCCCc-eeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEec---cccc
Q 019006 203 GIDNDVKVWDLRKGEVSMT----LQGHQDM-ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG---HQHN 274 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~~ 274 (347)
+.||++.+.++.+++.... +.....+ ...+.+.+++..++.....+.+.+.|+..... .....+.. ....
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~~~~~~i~ 313 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEALTEAERA 313 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE--EECCCEESSCTTTGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce--EEeeeeeeccccccc
Confidence 7788888888865554422 1111111 12356788888877777888999999853210 01111110 0000
Q ss_pred ---cccceEEEEECCCCCEEEEeeC----------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEec-CC
Q 019006 275 ---FEKNLLKCGWSPDGSKVTAGSS----------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCS-SD 339 (347)
Q Consensus 275 ---~~~~~~~~~~s~~g~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~D 339 (347)
.......++++|++++|++... ++.|.++|..+.+.+.+++.. ...+.++|+|+++ ++.++. .+
T Consensus 314 ~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 314 DDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred cccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCC
Confidence 0011112578999998777542 357999999999999888642 3589999999998 777776 58
Q ss_pred CcEEeecC
Q 019006 340 KQIYLGEI 347 (347)
Q Consensus 340 ~~i~i~~~ 347 (347)
+.|.+.|.
T Consensus 393 ~~VsVID~ 400 (426)
T 3c75_H 393 QTLHIYDA 400 (426)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 99998874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=107.47 Aligned_cols=239 Identities=11% Similarity=0.029 Sum_probs=160.0
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEe-C-c-----ccceeEEEEcCCCCEEEEecC--CC
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLK-G-H-----KNAILDLHWTTDGSQIISASP--DK 122 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~-~-h-----~~~v~~~~~~~~~~~l~s~~~--dg 122 (347)
.+.++|+|+.|+++. .++.|.++|.... +....+. + . ......+.++|||++++.+.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 789999999888776 4678999998643 3332222 1 0 123457889999999998864 57
Q ss_pred eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCC--CceEEEEEcCCC
Q 019006 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDK--YQITAVSFSDAS 196 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~--~~v~~~~~~~~~ 196 (347)
.|.+.|+.+.+.+..+..... ....+.+...+++.+.||++.+.+...++.... +... .....+.+.+++
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 899999999988877754322 111223335667777889988888855444321 1111 111235678888
Q ss_pred CeEEEEecCCcEEEEeCCCCceEE----EecC--------CCCceeEEEECCCCCEEEEEcC----------CCcEEEEe
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSM----TLQG--------HQDMITGMSLSPDGSYLLTNGM----------DCKLCIWD 254 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~----~~~~--------~~~~i~~v~~~~~~~~l~t~~~----------d~~i~~wd 254 (347)
..++..+..+.+.+.|........ .+.. .......++++|+++++++... ++.|.+.|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 888777788999999986554221 1100 0111223789999887776532 35799999
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEee-CCCeEEEEeCCCceeeEEe
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGS-SDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs-~dg~i~vwd~~~~~~~~~~ 314 (347)
.... +.+..+.. ......++|+|||+ +|++.. .++.|.++|+.+++.+.++
T Consensus 357 ~~T~----kvv~~I~v-----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETG----ERINKIEL-----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTC----CEEEEEEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCC----eEEEEEEC-----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 8753 33444432 12467889999999 888877 5899999999999999887
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-11 Score=101.49 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=148.2
Q ss_pred cceeEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 101 NAILDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 101 ~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
.......|+++++ .+++...++.|..|+. +++ ...+......+..+.+.+++ .++++...++.|..||.. +....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEE
Confidence 3456788999998 5667778899999997 444 34444455566677777665 466665566789999875 33221
Q ss_pred ecC---C--CCceEEEEEcCCCCeEEE----Eec-------------CCcEEEEeCCCCceEEEecCCCCceeEEEECCC
Q 019006 180 TFP---D--KYQITAVSFSDASDKIYT----GGI-------------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 180 ~~~---~--~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
... . ...+..+.+++++...++ |.. .+.|+.||..+++..... .....+.++|+|+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd 198 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD 198 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence 111 1 124667999999987776 432 256888887666544332 3345688999999
Q ss_pred CCEEEEEcCC------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 238 GSYLLTNGMD------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 238 ~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
++.|+.+... +.|.+||+.... ......+.... ......++++++|++.++. .+ .|++|+. .++.+
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~---~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVP---DGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLL 270 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCS---SSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECC---CCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEE
Confidence 9988777654 689999976321 00011111110 1223456789999955544 44 4999998 46666
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.++..+. .+..++|+++++.|..++.++..++
T Consensus 271 ~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 6766555 5889999999887777776655443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-11 Score=115.78 Aligned_cols=243 Identities=15% Similarity=0.161 Sum_probs=151.6
Q ss_pred cCccccEEEEEECCCCCeEE-----EeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC------
Q 019006 54 TGHQSAVYTMKFNPAGTVIA-----SGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK------ 122 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~-----s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg------ 122 (347)
.+|...+..++|||||++|| .|+.+.+|++||+.+.......+.. .....++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 35667899999999999888 3444567999999754321111211 113567899 999998887774
Q ss_pred -------eEEEEECCCCce----eeeeec-cCcceeEeecCCCCCCEEEEEcC---CCceEEEeCCCCC-ceeec-CCCC
Q 019006 123 -------TLRAWDVETGKQ----IKKMAE-HNSFVNSCCPSRRGPPLVVSGSD---DGTAKLWDMRQRG-AIQTF-PDKY 185 (347)
Q Consensus 123 -------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~~~-~~~~~-~~~~ 185 (347)
.|++|++.++.. +..... +........+++++..++++.+. +..+.++|+.++. ....+ ....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 399999887642 222222 33345567778887766665543 3578999987653 22333 3322
Q ss_pred ceEEEEEcCCCCeEEEEe-cC---CcEEEEeCCCCce--EEEecCCCCceeEEEECCCCCEEEEEcCCC---cEEEEeCC
Q 019006 186 QITAVSFSDASDKIYTGG-ID---NDVKVWDLRKGEV--SMTLQGHQDMITGMSLSPDGSYLLTNGMDC---KLCIWDMR 256 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~---~i~~wd~~ 256 (347)
..... +++++..|+..+ .+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|.+||+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33333 566666665444 33 5799999987643 234444554444 8889999887766544 68888875
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC----CeEEEEeCCCcee
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD----RMVYIWDTTSRRI 310 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d----g~i~vwd~~~~~~ 310 (347)
. .....+... ....+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 359 g-----~~~~~l~~p---~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 G-----KRVREVALP---GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp S-----CEEEEECCS---SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred C-----CeeEEeecC---CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 2 122222211 12345566778888877665444 7899999877653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-12 Score=109.61 Aligned_cols=169 Identities=12% Similarity=0.066 Sum_probs=124.1
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCC-----------CceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR-----------GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
+..++.++.. .++++|+.+ .+.+|++... +.....+... |+.++| ++..|+++ .++.|++||+
T Consensus 40 ~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 40 LQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred ccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 3444444443 467778776 4566975421 1112233444 999999 88899988 8899999999
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 293 (347)
++.........|...+.++.+.+. .++++..||.|.+||+.... ... ....+.+++|||+| ++.
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----~~~--------~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----TKQ--------LAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC----EEE--------EEESEEEEEECSSE--EEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc----ccc--------ccCCceEEEEcCCc--eEE
Confidence 876655556667777888877654 38888999999999997432 111 13468999999999 788
Q ss_pred eeCCCeEEEEeCCCcee--eEEe------c---CCccCeeeEEEcCCCCEEEE
Q 019006 294 GSSDRMVYIWDTTSRRI--LYKL------P---GHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~--~~~~------~---~h~~~v~~~~~~~~~~~l~s 335 (347)
|..||.+++|+...++. ..++ . +|...|.++.|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887775 4556 2 47888999999999998885
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-10 Score=96.26 Aligned_cols=234 Identities=11% Similarity=0.151 Sum_probs=150.6
Q ss_pred eEecCccccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEEC
Q 019006 51 MLLTGHQSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV 129 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 129 (347)
..+..+........|+|+|+ ++++...++.|..|+..+. ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 34445556678899999998 7778888899999987543 2344445667899999999997776666788999997
Q ss_pred CCCceeeeeecc-----CcceeEeecCCCCCCEEEE----EcC-------------CCceEEEeCCCCCceeecCCCCce
Q 019006 130 ETGKQIKKMAEH-----NSFVNSCCPSRRGPPLVVS----GSD-------------DGTAKLWDMRQRGAIQTFPDKYQI 187 (347)
Q Consensus 130 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~v 187 (347)
+ ++. ..+... ...+..+.+.+++ .+.++ |.. .+.|..+|..++...... .....
T Consensus 115 ~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p 190 (305)
T 3dr2_A 115 D-GQA-HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP 190 (305)
T ss_dssp T-SCE-EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred C-CCE-EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence 6 443 222111 1223455666654 45554 332 245677777555543333 33456
Q ss_pred EEEEEcCCCCeEEEEecC------CcEEEEeCCCCceE--EEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 188 TAVSFSDASDKIYTGGID------NDVKVWDLRKGEVS--MTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
..++|+|+++.++.+... +.|++||+..+... ..+ .........++++++|+..++ ..+ .|.+||..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-- 266 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-- 266 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT--
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC--
Confidence 789999999988877655 68999998654311 111 112334567899999995444 444 48899863
Q ss_pred CCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEe
Q 019006 259 APQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
...+..+... ..+..++|+|+++.|..++.++ ++.++
T Consensus 267 ---g~~~~~~~~~-----~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 267 ---GQLLGHIPTP-----GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ---SCEEEEEECS-----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ---CCEEEEEECC-----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 2333344322 2467788999999888888764 44433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-09 Score=91.63 Aligned_cols=230 Identities=9% Similarity=0.143 Sum_probs=146.1
Q ss_pred ecCccccEEEEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
+..+..--.+..|+|+ +.++++...++.|+.|+..+... ..+ .....+.+++++++|+++++. ++.|.+||.++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~ 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKE 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCC
Confidence 3444455678899985 55677777889999999865332 222 234678999999999965553 56799999887
Q ss_pred Cceeeeeec----cCcceeEeecCCCCCCEEEEEcC---------CCceEEEeCCCCCce-eecCCCCceEEEEEcCCCC
Q 019006 132 GKQIKKMAE----HNSFVNSCCPSRRGPPLVVSGSD---------DGTAKLWDMRQRGAI-QTFPDKYQITAVSFSDASD 197 (347)
Q Consensus 132 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~ 197 (347)
++....... ....+..+.+.+++. ++++... .....+|.+...... .........+.++|+|+++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCC
Confidence 754322211 122355677777654 5444321 123355554432222 2222233567899999998
Q ss_pred eEEE-EecCCcEEEEeC--CCCce-----EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 198 KIYT-GGIDNDVKVWDL--RKGEV-----SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 198 ~l~~-~~~dg~i~iwd~--~~~~~-----~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
.++. .+.++.|.+||+ .++.. ...+..+......++++++|+..++...++.|..||... .+....+.
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t----G~~~~~i~ 237 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT----GKRLQTVK 237 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT----CCEEEEEE
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC----ceEEEEEE
Confidence 7754 556788999987 44432 222333345678999999998888877788899999753 33444443
Q ss_pred ccccccccceEEEEEC-CCCCEEEEeeC
Q 019006 270 GHQHNFEKNLLKCGWS-PDGSKVTAGSS 296 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s-~~g~~l~sgs~ 296 (347)
.. ...+.+++|. |+++.|+.++.
T Consensus 238 ~p----~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LP----VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CS----SSBEEEEEEESGGGCEEEEEEB
T ss_pred CC----CCCceEEEEeCCCCCEEEEEcC
Confidence 32 2357899998 88887765553
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-09 Score=92.29 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=142.0
Q ss_pred eEEEEcCCCC-EEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC
Q 019006 104 LDLHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP 182 (347)
Q Consensus 104 ~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 182 (347)
.+..|+|++. .+++...++.|..||..+++.. .+. ....+..+.+.+++ .++++ +.+ .|.+||..++.......
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 4567998754 5566667889999998876542 222 23456666666554 34443 444 48999987766432221
Q ss_pred C-----CCceEEEEEcCCCCeEEEEec------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEE-cCCCcE
Q 019006 183 D-----KYQITAVSFSDASDKIYTGGI------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTN-GMDCKL 250 (347)
Q Consensus 183 ~-----~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i 250 (347)
. ...+..+.++++++..++... .+.|+.+| +++... +..+......++|+|+++.++.+ ..++.|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 1 135889999999986554432 24566666 454332 22233456789999999876544 557899
Q ss_pred EEEeCC--CC-CCcC-ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 251 CIWDMR--PY-APQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 251 ~~wd~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
.+||+. .. .... +....+... ......++++++|.+.++...++.|.+||. +++.+..+..+...+.+++|
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~----~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGI----KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTS----SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCC----CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence 999975 22 1111 111111111 123567889999998888777789999998 57777777777778999999
Q ss_pred c-CCCCEE-EEecCC
Q 019006 327 H-ATEPVI-GSCSSD 339 (347)
Q Consensus 327 ~-~~~~~l-~s~s~D 339 (347)
+ +++..| ++...+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 8 887655 444443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-09 Score=92.22 Aligned_cols=227 Identities=17% Similarity=0.089 Sum_probs=142.0
Q ss_pred ecCccccEEEEEECCCC-CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPAG-TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
+.....-.....|+|++ .++++...++.|..|+..+.. ...+. ....+.+++|+++|+++++. .+ .|.+||..+
T Consensus 44 ~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 44 DETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGR--KTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp ECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--EEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred eccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--EEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 33333446788999975 566777778899999986432 22222 24578999999999877765 34 499999887
Q ss_pred Cceeeeeec----cCcceeEeecCCCCCCEEEEEcC------CCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE
Q 019006 132 GKQIKKMAE----HNSFVNSCCPSRRGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT 201 (347)
Q Consensus 132 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 201 (347)
++....... ....+..+.+.+.+. ++++... .+.|..+| .++.............++|+|+++.++.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEE
Confidence 764322111 113456677777654 5444322 24455555 3332222222234678999999987765
Q ss_pred E-ecCCcEEEEeCC--CC-c-----eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 202 G-GIDNDVKVWDLR--KG-E-----VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 202 ~-~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
+ +.++.|.+||+. ++ . ....+.........+++.++|++.++...++.|..||.. ...+..+...
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-----g~~~~~i~~~- 269 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----GNHIARYEVP- 269 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----CCEEEEEECS-
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-----CCEEEEEECC-
Confidence 4 457889999986 55 3 122333334557889999999887777667889999863 2233333322
Q ss_pred cccccceEEEEEC-CCCCEEEEeeC
Q 019006 273 HNFEKNLLKCGWS-PDGSKVTAGSS 296 (347)
Q Consensus 273 ~~~~~~~~~~~~s-~~g~~l~sgs~ 296 (347)
...+.+++|+ +++..|+.++.
T Consensus 270 ---~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 ---GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---CSBEEEEEEESTTSCEEEEEEB
T ss_pred ---CCCcEEEEEecCCCCEEEEEec
Confidence 2357889998 88887755543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-10 Score=109.05 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=145.3
Q ss_pred CcccceeEEEEcCCCCEEEEe-----cCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-------
Q 019006 98 GHKNAILDLHWTTDGSQIISA-----SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG------- 165 (347)
Q Consensus 98 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~------- 165 (347)
+|...+..+.|||||++|+-+ +.+..|++||+.+++.+.... .........++ ++. .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNE-GFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTT-EEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCC-EEEEEEecCccccccc
Confidence 355578889999999988843 333579999999988654321 11112234555 544 445555543
Q ss_pred ------ceEEEeCCCCCc--eeecCC----CCceEEEEEcCCCCeEEEEe----cCCcEEEEeCCCCc-eEEEecCCCCc
Q 019006 166 ------TAKLWDMRQRGA--IQTFPD----KYQITAVSFSDASDKIYTGG----IDNDVKVWDLRKGE-VSMTLQGHQDM 228 (347)
Q Consensus 166 ------~i~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~ 228 (347)
.|++|++.+... ...+.. ......+.++|++++++... .++.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 388999876542 222222 23467889999999886433 23589999997763 34455555555
Q ss_pred eeEEEECCCCCEEE-EEcCC---CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC---eEE
Q 019006 229 ITGMSLSPDGSYLL-TNGMD---CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR---MVY 301 (347)
Q Consensus 229 i~~v~~~~~~~~l~-t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg---~i~ 301 (347)
.... +++++..|+ ....+ +.|..+|+...... . .+.+..+.. .+. .|++++++|+....++ .|+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~-~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-H-WRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G-CEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c-cEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEEE
Confidence 5444 566666554 44333 57888998753211 1 123333321 233 7899999888766543 689
Q ss_pred EEeCCCceeeEEec-CCccCeeeEEEcCCCCEEEEecCC----CcEEeecC
Q 019006 302 IWDTTSRRILYKLP-GHTGSVNESVFHATEPVIGSCSSD----KQIYLGEI 347 (347)
Q Consensus 302 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D----~~i~i~~~ 347 (347)
+||+..+. ...+. .+.+.+..+.+++++..++....+ ++|+.+|+
T Consensus 354 ~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 354 QFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 99988554 34443 234567778888888766654443 67777764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=112.37 Aligned_cols=202 Identities=18% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCC--ceE
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY--QIT 188 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~ 188 (347)
++..+++++.||.|+.||..+|+.+.++.. ..+....... +..++++++.|+.++.||..+++.+....... .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 477899999999999999999998887765 2222222222 23467777899999999998877655543321 110
Q ss_pred -EEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEE
Q 019006 189 -AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267 (347)
Q Consensus 189 -~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 267 (347)
+..+. .+..+++++.++.|+.||.++|+....+..+. ...++|++..+++++.|+.|..||.++.+..... .
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~--~ 157 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA--T 157 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE--E
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE--e
Confidence 00111 34577888899999999999998877766543 2345678889999999999999998765432221 1
Q ss_pred EeccccccccceEEEEECCCC---CEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCC
Q 019006 268 LEGHQHNFEKNLLKCGWSPDG---SKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~s~~g---~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 330 (347)
... .....+.++. ..+++++.||.|+.||..+++.+.+..-....+...++++++
T Consensus 158 ~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 158 YFD--------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG 215 (369)
T ss_dssp EEE--------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred ccc--------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence 111 0111223332 567788999999999999999988876433323333444444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-10 Score=106.71 Aligned_cols=269 Identities=12% Similarity=0.122 Sum_probs=172.2
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc----------ce-eEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN----------AI-LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..|++++.++.|+.+|... .+.......... .+ ..+.. ++..|+.++.|+.+..+|..+|+.+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT-GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT-TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCC-CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 55666777788888888753 233333322111 00 12222 356888889999999999999999887
Q ss_pred eecc-C----cceeEeecCCCCCCEEEEEcC------CCceEEEeCCCCCceeecCCCC---------------------
Q 019006 138 MAEH-N----SFVNSCCPSRRGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDKY--------------------- 185 (347)
Q Consensus 138 ~~~~-~----~~v~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~--------------------- 185 (347)
+... . ..+.. .+...+ ..++.++. ++.|..+|.++++.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~-~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITG-APRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCS-CCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCccccc-CcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 7654 1 01110 000112 24444443 6899999999988775542210
Q ss_pred ------------ceEEEEEcCCCCeEEEEecCC-------------------cEEEEeCCCCceEEEecC--CC------
Q 019006 186 ------------QITAVSFSDASDKIYTGGIDN-------------------DVKVWDLRKGEVSMTLQG--HQ------ 226 (347)
Q Consensus 186 ------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~------ 226 (347)
....++++++++.++.++.++ .|..+|.++++....++. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 113567888889998887664 499999999998877654 21
Q ss_pred -CceeEEEECCCC---CEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc------cc-------------------
Q 019006 227 -DMITGMSLSPDG---SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF------EK------------------- 277 (347)
Q Consensus 227 -~~i~~v~~~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~------~~------------------- 277 (347)
....-+....+| ..++.++.+|.+.++|..+.+. +...+...... ..
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE----eccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 111122333366 6789999999999999876432 21111100000 00
Q ss_pred ------ceEEEEECCCCCEEEEeeC-------------------------------------------CCeEEEEeCCCc
Q 019006 278 ------NLLKCGWSPDGSKVTAGSS-------------------------------------------DRMVYIWDTTSR 308 (347)
Q Consensus 278 ------~~~~~~~s~~g~~l~sgs~-------------------------------------------dg~i~vwd~~~~ 308 (347)
.-..++|+|++.++++... .|.|+.||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 0014678899888887543 278999999999
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+.+++ +...++...+...+.++..++.|+.++++|.
T Consensus 468 ~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 468 KAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp EEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 9998876 3445666677788888888999999999874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-10 Score=98.19 Aligned_cols=245 Identities=6% Similarity=-0.080 Sum_probs=154.6
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEeCc-------ccceeEEEEcCCCCEEEEecC--CC
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLKGH-------KNAILDLHWTTDGSQIISASP--DK 122 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg 122 (347)
.+.++|+++.|+++. .++.|.+||.... +....+... ......++++|||++++.+.. +.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 799999999888886 3688999999643 334444322 123467899999999998864 45
Q ss_pred eEEE--EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC-----CCcee----ecC-CCCceEEE
Q 019006 123 TLRA--WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-----RGAIQ----TFP-DKYQITAV 190 (347)
Q Consensus 123 ~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-----~~~~~----~~~-~~~~v~~~ 190 (347)
.+.+ +|..+ +..+..... ....+.+...+++.+.|+++.+.|+.. ++... .+. .....
T Consensus 148 ~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--- 217 (368)
T 1mda_H 148 AAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--- 217 (368)
T ss_dssp EEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---
T ss_pred eEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---
Confidence 7888 88876 334422111 111233445666777889988888876 32221 111 11122
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCc--eEEEecC-------C---CCceeEEEECCCCCEEEEEcC---------CCc
Q 019006 191 SFSDASDKIYTGGIDNDVKVWDLRKGE--VSMTLQG-------H---QDMITGMSLSPDGSYLLTNGM---------DCK 249 (347)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-------~---~~~i~~v~~~~~~~~l~t~~~---------d~~ 249 (347)
. .+++..++..+. +.+.+.|..... ....+.- + ......++++|++++++.+.. ++.
T Consensus 218 ~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 218 Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 3 556666666666 999999986542 2222211 0 011122789999988876532 235
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC-EEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEEc
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 327 (347)
+.++|+... +.+..+.. ......++|+|||+ ++++.. .++.|.++|+.+++.+.+++... ..+.++++
T Consensus 296 ~~ViD~~t~----~vv~~i~v-----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~ 365 (368)
T 1mda_H 296 TSSVTASVG----QTSGPISN-----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQ 365 (368)
T ss_dssp EEEEESSSC----CEEECCEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECC
T ss_pred EEEEECCCC----eEEEEEEC-----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEee
Confidence 669998753 22333321 12467889999998 455666 58999999999999999987543 45666766
Q ss_pred CC
Q 019006 328 AT 329 (347)
Q Consensus 328 ~~ 329 (347)
++
T Consensus 366 ~~ 367 (368)
T 1mda_H 366 NE 367 (368)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-08 Score=88.61 Aligned_cols=258 Identities=12% Similarity=0.101 Sum_probs=159.1
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcce--
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFV-- 145 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 145 (347)
++..++.++.++.|+.+|.... +.................. +..++.++.++.+..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDG-TVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTC-CEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 3556777888999999997533 2222222221111111122 4578888899999999999998877665432211
Q ss_pred ---eEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCc-----eEE---EEEcC--CCCeEEEEecCCcEEEEe
Q 019006 146 ---NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-----ITA---VSFSD--ASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 146 ---~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----v~~---~~~~~--~~~~l~~~~~dg~i~iwd 212 (347)
..... . ...++.++.++.+..+|..+++.......... +.. +...| .+..++.++.++.+..+|
T Consensus 179 ~~~~~~~~--~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTT--A-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEE--E-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEE--E-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 01111 1 23577788899999999988877655432210 000 00111 246788888999999999
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
.++++....... .....+.. ++..++.++.++.+..+|..+.+ ........... ....... .+..|+
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~---~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV----TLWTQSDLLHR---LLTSPVL--YNGNLV 322 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC----EEEEECTTTTS---CCCCCEE--ETTEEE
T ss_pred CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc----EEEeecccCCC---cccCCEE--ECCEEE
Confidence 999987766542 22344444 36678888889999999987542 22222211110 1111111 357888
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeee-EEEcCCCCEEEEecCCCcEEeec
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNE-SVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++.+|.|+++|..+++.+.+.+.....+.. ... . +..|..++.||.|+.++
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-A-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-E-TTEEEEEBTTSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-E-CCEEEEEeCCCEEEEEe
Confidence 9999999999999999998877654444332 222 2 45677788899999876
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-10 Score=99.15 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=143.1
Q ss_pred cceeEEEEcCCCCEEEEec--CCCeEEEEECCCCceeeeee-------ccCcceeEeecCCCCCCEEEEEcC-----CCc
Q 019006 101 NAILDLHWTTDGSQIISAS--PDKTLRAWDVETGKQIKKMA-------EHNSFVNSCCPSRRGPPLVVSGSD-----DGT 166 (347)
Q Consensus 101 ~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~s~~~-----d~~ 166 (347)
.....++++++|+.+++.. .++.++||.+.+++. ..+. .+...+..+.+.+.+ .++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCe
Confidence 5788999999999888863 234355665544442 2221 122455667776664 35554333 578
Q ss_pred eEEEeCCCCCceeecCC-------CCceEEEEEcCCCCeEEEE-e---cCCcEEEEeCCCCceEEEecCCCCcee-EEEE
Q 019006 167 AKLWDMRQRGAIQTFPD-------KYQITAVSFSDASDKIYTG-G---IDNDVKVWDLRKGEVSMTLQGHQDMIT-GMSL 234 (347)
Q Consensus 167 i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~~~~~~~~~~~i~-~v~~ 234 (347)
|.+||+.+++.+..+.. ...+..+++++++..++.+ . .++.|.+||+.+++....+.+|..... ...+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 99999988775554421 1246889999876665544 3 578999999998877666655432111 1334
Q ss_pred CCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-eEEEEeCCC---c--
Q 019006 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-MVYIWDTTS---R-- 308 (347)
Q Consensus 235 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-~i~vwd~~~---~-- 308 (347)
.++|..+.+.+.++.++.|.. ....++|+|||+.|+.+..++ .++.++... +
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp EETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred eECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 456666666677777655531 245688999999998887665 666665421 1
Q ss_pred ---eeeE--EecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 309 ---RILY--KLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 309 ---~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+... ...++.+....+++++++.++++...++.|.+||
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 1110 1224445678899999999999999999999987
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-09 Score=101.22 Aligned_cols=274 Identities=13% Similarity=0.139 Sum_probs=170.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc----------ce-eEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN----------AI-LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..+++++.++.|+.+|.... +.......+.. .+ ..+.. .+..|+.++.|+.+..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 567777788888999987533 33333322211 00 11122 356888899999999999999998877
Q ss_pred eecc-C-cceeEeecCC--CCCCEEEEEc------CCCceEEEeCCCCCceeecCC---C--------------------
Q 019006 138 MAEH-N-SFVNSCCPSR--RGPPLVVSGS------DDGTAKLWDMRQRGAIQTFPD---K-------------------- 184 (347)
Q Consensus 138 ~~~~-~-~~v~~~~~~~--~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~~---~-------------------- 184 (347)
+... . .........+ .+. .++.++ .++.|..||.++++.+..+.. .
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 6542 1 1101111111 122 344443 368999999999887654421 0
Q ss_pred ---------CceEEEEEcCCCCeEEEEecCCc-------------------EEEEeCCCCceEEEecC--CC-------C
Q 019006 185 ---------YQITAVSFSDASDKIYTGGIDND-------------------VKVWDLRKGEVSMTLQG--HQ-------D 227 (347)
Q Consensus 185 ---------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~ 227 (347)
.....++++++.+.++.++.++. |..+|.++++.+..++. |. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 00125778888899998887763 99999999998887764 21 1
Q ss_pred ceeEEEECCCCC---EEEEEcCCCcEEEEeCCCCCCcCc-------eeEEEeccc-------------ccccc-------
Q 019006 228 MITGMSLSPDGS---YLLTNGMDCKLCIWDMRPYAPQNR-------CVKILEGHQ-------------HNFEK------- 277 (347)
Q Consensus 228 ~i~~v~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~~-------------~~~~~------- 277 (347)
.........+|+ .++.++.+|.++++|.++.+.... ....+.... .....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 111112222454 788899999999999876542210 000000000 00000
Q ss_pred ----ceEEEEECCCCCEEEEeeC---------------------------------------------CCeEEEEeCCCc
Q 019006 278 ----NLLKCGWSPDGSKVTAGSS---------------------------------------------DRMVYIWDTTSR 308 (347)
Q Consensus 278 ----~~~~~~~s~~g~~l~sgs~---------------------------------------------dg~i~vwd~~~~ 308 (347)
....++|+|+..++++.+. +|.|+.||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 0112578888888877532 378999999999
Q ss_pred eeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 309 RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 309 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+.+.+++.+. .+....+...+.+++.++.|+.++.+|.
T Consensus 466 ~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 466 QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 9999887554 3444567778889999999999999873
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.2e-08 Score=80.14 Aligned_cols=249 Identities=9% Similarity=0.044 Sum_probs=149.9
Q ss_pred eEEEeeCCCcEEEEeccCCCee----eEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcce
Q 019006 71 VIASGSHDRDIFLWHVHGDCKN----FMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFV 145 (347)
Q Consensus 71 ~l~s~~~d~~v~~w~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 145 (347)
+|..+.. +.|+.+++.+.... ...+.........++|++++..|+ +-..++.|..++.........+.......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 3444333 36777777643211 111222234568899999766555 44567899999987654322222222344
Q ss_pred eEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCCeEEEEec---CCcEEEEeCCCCceEEE
Q 019006 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 221 (347)
..+++.+.+..++++-...+.|.++++............ .....++++|++..++.+.. .+.|..+++........
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence 556666655667777777889999998654332222222 46788999998777766554 36888888764322221
Q ss_pred ecCCCCceeEEEECCCCCEEE-EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-eCCCe
Q 019006 222 LQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-SSDRM 299 (347)
Q Consensus 222 ~~~~~~~i~~v~~~~~~~~l~-t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s~dg~ 299 (347)
..........+++++++..|. +....+.|..+|.... ......... .....++. ++..|..+ ...+.
T Consensus 162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----~~~~~~~~~-----~~P~gi~~--d~~~lyva~~~~~~ 230 (267)
T 1npe_A 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----GRRKVLEGL-----QYPFAVTS--YGKNLYYTDWKTNS 230 (267)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE----EEEEEEECC-----CSEEEEEE--ETTEEEEEETTTTE
T ss_pred EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----ceEEEecCC-----CCceEEEE--eCCEEEEEECCCCe
Confidence 222234578899999876665 4455678999997531 111122211 12234444 34555544 45689
Q ss_pred EEEEeCCCceeeEEecCCc-cCeeeEEEcCCCC
Q 019006 300 VYIWDTTSRRILYKLPGHT-GSVNESVFHATEP 331 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 331 (347)
|+++|..+++.+..+.... .....+++.|++.
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999999888876443 3578888888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-08 Score=87.98 Aligned_cols=258 Identities=11% Similarity=0.062 Sum_probs=157.4
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCc---------ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeee
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGH---------KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 138 (347)
.+..+++++.++.|+.+|..... ........ ...+.. ....++..++.++.++.+..+|..+++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGK-EIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC-EEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCc-eeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 35677778888889999875322 22222221 112222 12224567888889999999999999887666
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCce------EEEEEcCCCCeEEEEecCCcEEEEe
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQI------TAVSFSDASDKIYTGGIDNDVKVWD 212 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~iwd 212 (347)
............. ...++.++.++.+..+|.++++.+..+.....+ ...... +..++.++.++.+..+|
T Consensus 130 ~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 5433221111111 236777889999999999988877655432221 111222 46788888999999999
Q ss_pred CCCCceEEEecCCCCc-------eeEEEECC--CCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 213 LRKGEVSMTLQGHQDM-------ITGMSLSP--DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~-------i~~v~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
..+++........... +..+.-.| .+..++.++.++.+..+|....+ ....... .......
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~----~~w~~~~------~~~~~~~ 274 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ----IMWKREL------GSVNDFI 274 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC----EEEEECC------CCEEEEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc----EEeeccC------CCCCCce
Confidence 9999887665432100 00011111 25677788889999999987532 2221111 1122222
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-ccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-TGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.++..|+.++.++.|+.+|..+++.+.+.... ...+..... .+..|..++.+|.++.+|
T Consensus 275 --~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 275 --VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp --EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred --EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence 24678888899999999999999988877622 222222233 245677777888888776
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-09 Score=101.33 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=152.6
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeC--cccceeEEEEcC---CCCEEEEec------CCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKG--HKNAILDLHWTT---DGSQIISAS------PDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~--h~~~v~~~~~~~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~ 137 (347)
+..++.++.|+.|+.+|.... +....... +......+..+| ++ .++.++ .+|.|+.||..+|+.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTG-QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCC-CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 457788889999999998533 23222222 111111111112 34 444443 378999999999998876
Q ss_pred eeccC---c---------------------------ce-eEeecCCCCCCEEEEEcCCCc-------------------e
Q 019006 138 MAEHN---S---------------------------FV-NSCCPSRRGPPLVVSGSDDGT-------------------A 167 (347)
Q Consensus 138 ~~~~~---~---------------------------~v-~~~~~~~~~~~~~~s~~~d~~-------------------i 167 (347)
+.... . .+ ....+.+. ..+++.++.++. |
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 64210 0 00 01222232 346777777653 8
Q ss_pred EEEeCCCCCceeecCC---C-------CceEEEEEcCCCC---eEEEEecCCcEEEEeCCCCceEEEecCCC--------
Q 019006 168 KLWDMRQRGAIQTFPD---K-------YQITAVSFSDASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-------- 226 (347)
Q Consensus 168 ~iwd~~~~~~~~~~~~---~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------- 226 (347)
..+|.++++.+..+.. . ..........++. .++.++.+|.++++|.++++.+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999988765532 1 1122222222443 68889999999999999998764321100
Q ss_pred --------------------C-----------ceeEEEECCCCCEEEEEcC-----------------------------
Q 019006 227 --------------------D-----------MITGMSLSPDGSYLLTNGM----------------------------- 246 (347)
Q Consensus 227 --------------------~-----------~i~~v~~~~~~~~l~t~~~----------------------------- 246 (347)
. .-..++|+|+...+++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0 0123788888777776532
Q ss_pred ----------------CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee
Q 019006 247 ----------------DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310 (347)
Q Consensus 247 ----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~ 310 (347)
+|.|..||+.+. +.+-..+.+. ......+...+.+++.|+.||.|+.||.+++++
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG----~~~W~~~~~~-----~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ----QAAWEVPYVT-----IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT----EEEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC----CeEeEccCCC-----CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 366888887643 2222222221 122234556788999999999999999999999
Q ss_pred eEEecCCccCe-eeEEEcCCCCEEE
Q 019006 311 LYKLPGHTGSV-NESVFHATEPVIG 334 (347)
Q Consensus 311 ~~~~~~h~~~v-~~~~~~~~~~~l~ 334 (347)
+.+++...+.+ .-+.|..+++..+
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEE
Confidence 99887554333 5577877776443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=95.22 Aligned_cols=251 Identities=9% Similarity=-0.043 Sum_probs=154.4
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEECCCCceeeeeecc-------C
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWDVETGKQIKKMAEH-------N 142 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~ 142 (347)
+|.++|.... +....+..-..+ .+.++||+++++.+. .++.|.+||..+++.+.++... .
T Consensus 47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7888887543 444444433344 799999999988875 3688999999999998887543 1
Q ss_pred cceeEeecCCCCCCEEEEEcC-CCceEE--EeCCCCCceeecCCCCceEEEEEcCCCC-eEEEEecCCcEEEEeCCC---
Q 019006 143 SFVNSCCPSRRGPPLVVSGSD-DGTAKL--WDMRQRGAIQTFPDKYQITAVSFSDASD-KIYTGGIDNDVKVWDLRK--- 215 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~-d~~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 215 (347)
.....+.+++++..++++-.. +..+.+ +|..+ +..++.... ..+.|++. .+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 223346677777766655433 467888 89876 333322111 11233433 445566788888888876
Q ss_pred --CceEEE----ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc------ccccccceEEEE
Q 019006 216 --GEVSMT----LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH------QHNFEKNLLKCG 283 (347)
Q Consensus 216 --~~~~~~----~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 283 (347)
++.... +.-...+. . .+++..++..+. +.+.+.|+.... ......+... ..........++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeE
Confidence 332211 11112222 3 455565555555 899999985321 1111111100 000001111157
Q ss_pred ECCCCCEEEEeeC---------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC-EEEEec-CCCcEEeecC
Q 019006 284 WSPDGSKVTAGSS---------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP-VIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 284 ~s~~g~~l~sgs~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~D~~i~i~~~ 347 (347)
++||++.|+.+.. ++.+.++|+.+++.+.+++... ....++|+|+++ ++++.. .+++|.+.|+
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 8999998887543 2356699999999998887544 689999999997 667777 6999999874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-12 Score=110.92 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=101.3
Q ss_pred CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 68 AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 68 ~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
++..+++++.|+.|+.||.... +....+.. ..+.+..+..++..+++++.||.++.||..+++.+..+..+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 5788999999999999997533 33334444 44555555667778888899999999999888876555332111111
Q ss_pred eecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCC
Q 019006 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227 (347)
Q Consensus 148 ~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 227 (347)
..+.......+++++.++.+..||.++++.+..+.... ...++|+++.+++++.++.|+.||.++++....+..+.
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 11111122356778889999999999888776665432 23445678899999999999999999998765543221
Q ss_pred ceeEEEECCCC---CEEEEEcCCCcEEEEeCCCC
Q 019006 228 MITGMSLSPDG---SYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 228 ~i~~v~~~~~~---~~l~t~~~d~~i~~wd~~~~ 258 (347)
.....+.++. ..+++++.||.+..||.++.
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1223344332 56777888999999998754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-09 Score=99.08 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=157.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCc-c----cceeE-EEEcCCCCEEEEecC------CCeEEEEECCCCceee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGH-K----NAILD-LHWTTDGSQIISASP------DKTLRAWDVETGKQIK 136 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h-~----~~v~~-~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~ 136 (347)
+..++.++.|+.|+.+|.... +.......+ . ..+.+ ... .+..++.++. ++.|+.+|..+|+.+.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATG-KEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC-CEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 467888888999999998533 333333332 1 11111 011 2345555543 7999999999999887
Q ss_pred eeeccCcce--------------------------------eEeecCCCCCCEEEEEcCCC-------------------
Q 019006 137 KMAEHNSFV--------------------------------NSCCPSRRGPPLVVSGSDDG------------------- 165 (347)
Q Consensus 137 ~~~~~~~~v--------------------------------~~~~~~~~~~~~~~s~~~d~------------------- 165 (347)
++....... ....+.+.. .+++.++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 765422110 011222333 4566666553
Q ss_pred ceEEEeCCCCCceeecCC---C-------CceEEEEEcCCC---CeEEEEecCCcEEEEeCCCCceEEEecCCC------
Q 019006 166 TAKLWDMRQRGAIQTFPD---K-------YQITAVSFSDAS---DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ------ 226 (347)
Q Consensus 166 ~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------ 226 (347)
.|..+|.++++.+..++. . .....+....++ ..++.++.+|.++++|.++++.+..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 488999999887765432 1 122223333356 578899999999999999998876554211
Q ss_pred -----Cce------------------------eEEEECCCCCEEEEEcCC------------------------------
Q 019006 227 -----DMI------------------------TGMSLSPDGSYLLTNGMD------------------------------ 247 (347)
Q Consensus 227 -----~~i------------------------~~v~~~~~~~~l~t~~~d------------------------------ 247 (347)
..+ ..++++|++..+++...+
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 001 157888988888775432
Q ss_pred -------------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 248 -------------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 -------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
+.|..||+.+.+ .+-..+.. .......+..++.+++.|+.||.+++||..+++++.++
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~~~~-----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQK----AAWSVEHV-----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTE----EEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCCccEEEEEeCCCCc----EEeecCCC-----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 678888876432 22222211 12233345677889999999999999999999999888
Q ss_pred cCCc-cCeeeEEEcCCCCEEEE
Q 019006 315 PGHT-GSVNESVFHATEPVIGS 335 (347)
Q Consensus 315 ~~h~-~~v~~~~~~~~~~~l~s 335 (347)
.-.. ..-.-+.|..+++.++.
T Consensus 515 ~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 515 PTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp ECSSCCCSCCEEEEETTEEEEE
T ss_pred eCCCCcccCCEEEEeCCEEEEE
Confidence 6443 33356667777764443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-08 Score=87.17 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=142.9
Q ss_pred CCCCEEEE-ecCCCeEEEEECCCC----ceeeeee------c-cCcceeEeecCCCCCCEEEEEcCC------CceEEEe
Q 019006 110 TDGSQIIS-ASPDKTLRAWDVETG----KQIKKMA------E-HNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWD 171 (347)
Q Consensus 110 ~~~~~l~s-~~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd 171 (347)
+++++|+. +..++.|.++|+.+. +..+.+. . ....-..+...+++ +++++..+ +.+.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 77777664 557789999999755 3444441 0 11122223344554 66665554 7899999
Q ss_pred CCCCCceeecCCC----CceEEEEEcCCCCeEEEEe-------------------cCCcEEEEeCCCCceEEEecCC-C-
Q 019006 172 MRQRGAIQTFPDK----YQITAVSFSDASDKIYTGG-------------------IDNDVKVWDLRKGEVSMTLQGH-Q- 226 (347)
Q Consensus 172 ~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~-~- 226 (347)
..+.+.+...+.. .--..+.|+|+++.+++.. ..++|.+||+.+++...++..- .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9998888777532 1234577899999888874 3678999999988777766542 1
Q ss_pred CceeEEEE--CCCCCEEEEEc------CCCcEEEEeCCCCCCcCceeEEE--eccc--ccc----------ccceEEEEE
Q 019006 227 DMITGMSL--SPDGSYLLTNG------MDCKLCIWDMRPYAPQNRCVKIL--EGHQ--HNF----------EKNLLKCGW 284 (347)
Q Consensus 227 ~~i~~v~~--~~~~~~l~t~~------~d~~i~~wd~~~~~~~~~~~~~~--~~~~--~~~----------~~~~~~~~~ 284 (347)
.....+.| +|++++++++. .+++|.+|..... .....+.+ .... ..+ ......+.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 22345555 99999888776 4568877665421 11111111 1100 000 123567789
Q ss_pred CCCCCEEEEeeC-CCeEEEEeCC---CceeeEEecCCc--------------cCeeeEEEcCCCCEEEEec
Q 019006 285 SPDGSKVTAGSS-DRMVYIWDTT---SRRILYKLPGHT--------------GSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 285 s~~g~~l~sgs~-dg~i~vwd~~---~~~~~~~~~~h~--------------~~v~~~~~~~~~~~l~s~s 337 (347)
||||++|.++.. .+.|.+||+. +.+++.++.-.. +....++++|++++|..+.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999987664 6799999975 235555554321 1368899999999887766
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-08 Score=85.18 Aligned_cols=261 Identities=14% Similarity=0.143 Sum_probs=157.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
...+.++...++|.+. .++.+ ++.++..+. .................. +..|..++.++.+..+|.. ++...
T Consensus 59 ~~~~~~~~~~~~g~l~-v~t~~--l~~~d~~g~--~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIY-FGSDK--VYAINPDGT--EKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GEEEECCEETTTTEEC-CSSCE--EEEECCCGG--GGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccceEEecCCcEE-EecCc--EEEECCCCc--EEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 3445667776666544 44444 777775322 111111111112222222 4567778889999999988 76665
Q ss_pred eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
........+......+.+ .+..++.++.+..+|.. +.....+.. ...+.++..++++. ++.++ +.|..+| .+
T Consensus 131 ~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PD 203 (330)
T ss_dssp EEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TT
T ss_pred EEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CC
Confidence 555444433333333332 35667888999999988 655544432 23455566666655 55555 8899999 77
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 216 ~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
++...........+.++...+++. +..++.++.+..+|.. ......+.... .....+...+++ .|..++
T Consensus 204 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-----g~~~~~~~~~~----~~~~~~~~~~~g-~l~v~t 272 (330)
T 3hxj_A 204 GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-----GTEKWRFKTGK----RIESSPVIGNTD-TIYFGS 272 (330)
T ss_dssp SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-----SCEEEEEECSS----CCCSCCEECTTS-CEEEEC
T ss_pred CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-----CCEeEEeeCCC----CccccceEcCCC-eEEEec
Confidence 777776665556688888888776 4455667778888742 12222222211 111223344455 566788
Q ss_pred CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
.+|.|+.+|. +++.+..+......+..+...+++.+. .++.+|.+++.
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~ 320 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYAL 320 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEE
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEE
Confidence 8889999996 677777666556667788887887655 57788888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-07 Score=82.60 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=141.7
Q ss_pred CCCCeE-EEeeCCCcEEEEeccCCC---eeeEEEe------C-cccceeEEEEcCCCCEEEEecCC------CeEEEEEC
Q 019006 67 PAGTVI-ASGSHDRDIFLWHVHGDC---KNFMVLK------G-HKNAILDLHWTTDGSQIISASPD------KTLRAWDV 129 (347)
Q Consensus 67 ~~~~~l-~s~~~d~~v~~w~~~~~~---~~~~~~~------~-h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~ 129 (347)
+++++| +++..++.|+++|...+. +....+. . -...-..+..+|+| .++++..+ |.+.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 777765 456678899999985332 2223331 0 11134566788999 77776555 78999999
Q ss_pred CCCceeeeeeccCc---ceeEeecCCCCCCEEEEEc-------------------CCCceEEEeCCCCCceeecCCC---
Q 019006 130 ETGKQIKKMAEHNS---FVNSCCPSRRGPPLVVSGS-------------------DDGTAKLWDMRQRGAIQTFPDK--- 184 (347)
Q Consensus 130 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~--- 184 (347)
.+++.+.++..... ....+.+.+..+ .+++.. .+.+|.+||+.+++.++++...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 99988887753322 233355555554 555553 4789999999988777776543
Q ss_pred CceEEEEE--cCCCCeEEEEec------CCcEEEEeCCCCceE--EE--ecCC----------------CCceeEEEECC
Q 019006 185 YQITAVSF--SDASDKIYTGGI------DNDVKVWDLRKGEVS--MT--LQGH----------------QDMITGMSLSP 236 (347)
Q Consensus 185 ~~v~~~~~--~~~~~~l~~~~~------dg~i~iwd~~~~~~~--~~--~~~~----------------~~~i~~v~~~~ 236 (347)
.....+.| +|+++++++++. +++|.+|....++.. .. +... ......|.+++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 23444555 999999888774 557877655443211 11 1110 13467899999
Q ss_pred CCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEeccc----------cccccceEEEEECCCCCEEEEee
Q 019006 237 DGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQ----------HNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 237 ~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
||++|.++.. .+.|.+||+.... ..+.+..+.... .........+.++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~-~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPF-KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTT-SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCC-CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999887764 5799999986322 223333332210 00111245677999999999887
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-08 Score=80.84 Aligned_cols=197 Identities=9% Similarity=0.018 Sum_probs=134.9
Q ss_pred eeEEEEcCCCCEEEEecC--CCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 103 ILDLHWTTDGSQIISASP--DKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...+.|++++...++.+. ++.|++.|+.+++.+..+.... .+...+... +..+.++.-.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998755555443 5799999999999887765322 222233333 34567777788999999999888887
Q ss_pred ecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-----CceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 180 TFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-----DMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 180 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.++.. .. ...++++++.++++..++.|.++|..+.+....+.--. ..++.+.|. ++...+....++.|.+.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 77543 22 23355577888877778899999999888777665321 236788887 67555555567899999
Q ss_pred eCCCCCCcCceeEEEeccc---------cccccceEEEEECCCCCEE-EEeeCCCeEEEEeCCCc
Q 019006 254 DMRPYAPQNRCVKILEGHQ---------HNFEKNLLKCGWSPDGSKV-TAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~g~~l-~sgs~dg~i~vwd~~~~ 308 (347)
|.... +.+..+.... .........++|+|+++.| +++...+.+++.++...
T Consensus 178 D~~tg----~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAKDG----TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTC----CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCC----cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 98753 3444443210 0011356889999998755 55667889999987654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-09 Score=88.65 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=149.1
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS 143 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 143 (347)
.+..++ .|..++.++.|+.|+ ... +.......+...+.++...+++. |..++.+ +..+|. +++.+..+.....
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 333444 455677788888888 322 22222222333456666666664 5555554 888885 5554443332222
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (347)
........ ...+..++.++.+..+|.. +........ ...+.++...+++ .++.++.++.|..||.. ++....+
T Consensus 99 ~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~ 172 (330)
T 3hxj_A 99 IVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRF 172 (330)
T ss_dssp --CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEEE
T ss_pred cccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEE
Confidence 11111111 2456778888999999987 555444332 2234555566555 47778888999999998 7776666
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEE
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 302 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~v 302 (347)
......+.++.+.+++...+.. +.+..+| ... ......... ...+.++...++|. |..++.++.|+.
T Consensus 173 ~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g----~~~~~~~~~----~~~~~~~~~~~~g~-l~v~t~~~gl~~ 239 (330)
T 3hxj_A 173 KTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG----TEKWNFYAG----YWTVTRPAISEDGT-IYVTSLDGHLYA 239 (330)
T ss_dssp ECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS----CEEEEECCS----SCCCSCCEECTTSC-EEEEETTTEEEE
T ss_pred ecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC----cEEEEEccC----CcceeceEECCCCe-EEEEcCCCeEEE
Confidence 6555667778887777755544 7889998 322 222222211 12345556677775 555667788999
Q ss_pred EeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 303 WDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 303 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|. +++.+..+......+..+.+.+++. |..++.+|.|+.+|
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN 281 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred ECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence 984 5666666665555555666665664 44555666666554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-08 Score=88.04 Aligned_cols=240 Identities=12% Similarity=0.114 Sum_probs=146.6
Q ss_pred CCCCeEEEeeCC-CcEEEEeccCCCeeeEEEe-CcccceeEEEE-c-CCCCEEEEec------------------CCCeE
Q 019006 67 PAGTVIASGSHD-RDIFLWHVHGDCKNFMVLK-GHKNAILDLHW-T-TDGSQIISAS------------------PDKTL 124 (347)
Q Consensus 67 ~~~~~l~s~~~d-~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~-~-~~~~~l~s~~------------------~dg~i 124 (347)
+||++|.....+ ..|.+.|+... +....+. ........+++ + |++++++.++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 478877776654 45888888642 3223222 12245778887 5 8999998884 34579
Q ss_pred EEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC-------------------------------------Cce
Q 019006 125 RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-------------------------------------GTA 167 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------------------------------------~~i 167 (347)
.+.|.++.+...++..... ...+..++++...+++...+ +.+
T Consensus 178 tvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999998877776654222 22234444444333333222 246
Q ss_pred EEEeCCC--CCc-eeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCc------------eEEEecCCCCceeE
Q 019006 168 KLWDMRQ--RGA-IQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGE------------VSMTLQGHQDMITG 231 (347)
Q Consensus 168 ~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~i~~ 231 (347)
.+.|.++ +.. +..++......++.++||++++++++ .+++|.++|+.+.+ ...+...- .....
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEE
T ss_pred EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcce
Confidence 7777776 434 44554444567799999999887665 67899999998653 22333322 33678
Q ss_pred EEECCCCCEEEEEcCCCcEEEEeCCCC------CCcCceeEEEecccc-ccccceEEEEECCCCCEEEEee---CCCeE-
Q 019006 232 MSLSPDGSYLLTNGMDCKLCIWDMRPY------APQNRCVKILEGHQH-NFEKNLLKCGWSPDGSKVTAGS---SDRMV- 300 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~l~sgs---~dg~i- 300 (347)
++|+|+|....+.-.|+.|..||+... +.....+..+..+-. .+...-....++|||++|+++. .|+.+
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999955556778999999998641 111334455544321 0000001123589999999864 35432
Q ss_pred ---------EEEeCCCce
Q 019006 301 ---------YIWDTTSRR 309 (347)
Q Consensus 301 ---------~vwd~~~~~ 309 (347)
.++|...++
T Consensus 416 ~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCSSCCEEEEEEECSSSS
T ss_pred CCCCCCCcceEEEcCCCc
Confidence 788885544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=77.95 Aligned_cols=193 Identities=10% Similarity=0.039 Sum_probs=126.3
Q ss_pred ceeEeecCCCCCCEEEEEcC--CCceEEEeCCCCCceeecCCCC--ceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCce
Q 019006 144 FVNSCCPSRRGPPLVVSGSD--DGTAKLWDMRQRGAIQTFPDKY--QITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEV 218 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~--d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 218 (347)
+...+.+.++ ..++++.+. ++.|.++|+.+++.+..++... ....+++. ++.++.+. .++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3455666655 345555443 6799999999999887764322 22344444 55666555 578999999999988
Q ss_pred EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc-ccccceEEEEECCCCCEEEEeeCC
Q 019006 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH-NFEKNLLKCGWSPDGSKVTAGSSD 297 (347)
Q Consensus 219 ~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~l~sgs~d 297 (347)
..++..-.. ....++++++.++++..++.|.++|....+ ....+.-... .....+..+.|. +|...+....+
T Consensus 99 ~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 99 IKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp EEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc----EEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 887753211 223455678777777778899999987543 2222221110 011235566777 67555555568
Q ss_pred CeEEEEeCCCceeeEEecCCc-------------cCeeeEEEcCCCC-EEEEecCCCcEEeec
Q 019006 298 RMVYIWDTTSRRILYKLPGHT-------------GSVNESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
+.|.+.|..+++.+.+++-.. ...+.++|+|+++ +++++...++++.-+
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 899999999999988876321 2458999999975 666777777776544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-07 Score=77.24 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=121.1
Q ss_pred ceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEE
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSM 220 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 220 (347)
+...+.+. . ..++.+.+.+| .|+.+|+++++.+...+.........+.++++.++... .++.+.+||..+.+...
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34555555 2 35667776665 89999999999888776544443333333456676655 57899999999999888
Q ss_pred EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-cccceEEEEECCCCCEEEEeeCCCe
Q 019006 221 TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-FEKNLLKCGWSPDGSKVTAGSSDRM 299 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sgs~dg~ 299 (347)
++.... ....+++++..|+.+..++.|.++|..+++. ...+.-.... ....+..+.|. +|+..+..-.++.
T Consensus 122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v----~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP----VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSE----EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeE----EEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 876432 2233445677777766678899999875432 2222221100 01233445665 6765555557889
Q ss_pred EEEEeCCCceeeEEecCC------------ccCeeeEEEcCCCCEEEEecC
Q 019006 300 VYIWDTTSRRILYKLPGH------------TGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 300 i~vwd~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~l~s~s~ 338 (347)
|.+.|..+++.+.++.-. ....+.+||+|+.+.|.-++.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998877532 124589999998876665554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-07 Score=86.66 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=163.5
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCccc----------ce-eEEEEcCCCCEEEEecCCCeEEEEECCCCceeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN----------AI-LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 137 (347)
+..++.++.++.|+.+|.... +.......... .+ ..+.. .+..++.++.|+.+..+|..+|+.+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 556777777888888887432 22222222111 00 11122 256788888999999999999998877
Q ss_pred eeccCcc-eeEeecCC--CCCCEEEEEcC------CCceEEEeCCCCCceeecCC---CC--------------------
Q 019006 138 MAEHNSF-VNSCCPSR--RGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPD---KY-------------------- 185 (347)
Q Consensus 138 ~~~~~~~-v~~~~~~~--~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~---~~-------------------- 185 (347)
+...... .......+ .+ ..++.+.. ++.|..+|.++++.+..+.. ..
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 6542110 00000000 12 24444432 58899999999887755421 00
Q ss_pred ---------ceEEEEEcCCCCeEEEEecCC-------------------cEEEEeCCCCceEEEecC--CC-------Cc
Q 019006 186 ---------QITAVSFSDASDKIYTGGIDN-------------------DVKVWDLRKGEVSMTLQG--HQ-------DM 228 (347)
Q Consensus 186 ---------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~ 228 (347)
....+++++..+.++.++.++ .|.-+|.++++....++. |. ..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 012467888888888887765 399999999998877764 21 11
Q ss_pred eeEEEECCCCC---EEEEEcCCCcEEEEeCCCCCCcCc-------eeEEEec--------ccccccc-------------
Q 019006 229 ITGMSLSPDGS---YLLTNGMDCKLCIWDMRPYAPQNR-------CVKILEG--------HQHNFEK------------- 277 (347)
Q Consensus 229 i~~v~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~-------~~~~~~~--------~~~~~~~------------- 277 (347)
.....+..+|+ .++.++.+|.+.++|..+.+.... ....+.. ....+..
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22222223554 688899999999999875432200 0000000 0000000
Q ss_pred ceEEEEECCCCCEEEEe------------------------------------eCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 278 NLLKCGWSPDGSKVTAG------------------------------------SSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sg------------------------------------s~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
.-..++++|+..+++.. ..+|.|+.||+.+++.+.+.+.+. ..
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence 00125677776665541 134889999999999998876433 34
Q ss_pred eeEEEcCCCCEEEEecCCCcEEeec
Q 019006 322 NESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
....+...+.++..++.|+.++.+|
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cCceeEeCCCEEEEECCcccchhhh
Confidence 4445666777888899999999887
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-06 Score=73.77 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=137.9
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC------------------cccceeEEEEcC-CCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG------------------HKNAILDLHWTT-DGS 113 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~------------------h~~~v~~~~~~~-~~~ 113 (347)
+.+.-....+++|.++|.++.++..++.|..|+..+.......... .......+++.+ +++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3343345667889999998888888999999987543221111110 013468899997 554
Q ss_pred EEEEecCCCeEEEEECCCCceeeeeec-----cCcceeEeecCC-CCCCEEEEEcC-----------------CCceEEE
Q 019006 114 QIISASPDKTLRAWDVETGKQIKKMAE-----HNSFVNSCCPSR-RGPPLVVSGSD-----------------DGTAKLW 170 (347)
Q Consensus 114 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~s~~~-----------------d~~i~iw 170 (347)
|+.+...+.+..+|..++.. ..+.. .......++..+ .+ .+.++-.. ++.+..+
T Consensus 94 -l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 94 -LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp -EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred -EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEE
Confidence 55454445588888765432 22211 112345566665 44 45554322 3567777
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCCCEEEEEcC-
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTG-GIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTNGM- 246 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~~~- 246 (347)
|..++..............++++++++.++.+ +..+.|..|++.... ....+..... ...+++.++|++.++...
T Consensus 171 d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp ETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred eCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence 77654432211111235678999999877655 566889999987421 1111111123 678999999987766544
Q ss_pred ---------CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 247 ---------DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 247 ---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
.+.|..+|.. ...+..+..........+..+++ .++.+.++....+.|.++++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-----G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-----GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-----SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECCC-----CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 3567777643 33333343221110123444444 3565556666677888888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-07 Score=75.07 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc-ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS-FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF 181 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 181 (347)
...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ .... +...+.. .+..+.++.-.++.+.+||..+.+.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4577787 3566778888999999999999988777 3322 2222333 34467777778999999999999988887
Q ss_pred CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-----CceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-----DMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+....-..++ ++++.|+.+..++.|.++|..+.+...++.-.. ..++.+.|. +|+..+..-.++.|.+.|..
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 6544333344 457788877778899999999988777664321 245677776 67655555567899999987
Q ss_pred CCCCcCceeEEEecc---------ccccccceEEEEECCCCCEEEEee
Q 019006 257 PYAPQNRCVKILEGH---------QHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
+ ++.+..+... .....+....++|+|+++.|+..+
T Consensus 210 T----G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 T----GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp T----CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred C----CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 4 3444444321 111224678899999876655544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-05 Score=75.31 Aligned_cols=266 Identities=9% Similarity=0.044 Sum_probs=161.5
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC--------cccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG--------HKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
...|.++...+++.+.+. +.++-+.+|+.... .+..+.. ....|.++...++|...+.. .+| +.+||
T Consensus 214 ~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVA-TEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIYH 288 (795)
T ss_dssp CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEEE
T ss_pred CCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheEc
Confidence 346778877777766554 43334788886432 1222211 13568999999888766544 444 88888
Q ss_pred CCCCceeeeee-------ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-------CCCceEEEEEcC
Q 019006 129 VETGKQIKKMA-------EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-------DKYQITAVSFSD 194 (347)
Q Consensus 129 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~ 194 (347)
..+++...... .....|.++...+.+ .+..|+.++-|..++........... ....|.++..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 77654322111 112346666655544 35667887888888875443221111 123588888887
Q ss_pred CCCeEEEEecCCcEEEEeCCCCceEEEecC--------CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEVSMTLQG--------HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
++ .+..|+.++-|..||..+++...-... ....|.++...++++.|..|..++.|.++|.... . ..
T Consensus 367 ~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~----~-~~ 440 (795)
T 4a2l_A 367 DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG----Q-VE 440 (795)
T ss_dssp TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC----C-EE
T ss_pred CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC----c-EE
Confidence 65 577788888899999877654332111 1356889988888874666677677999997632 1 12
Q ss_pred EEeccc-cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC------CccCeeeEEEcCCCCEEEEec
Q 019006 267 ILEGHQ-HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG------HTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 267 ~~~~~~-~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~s 337 (347)
.+.... ......+.++...++|.+.+... + -|.+||..+++....... +...|.++...+++.+.+.+.
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred EeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 222100 01124678888888888666544 4 589999887754332111 235688888888887666554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-07 Score=74.78 Aligned_cols=184 Identities=11% Similarity=0.144 Sum_probs=124.4
Q ss_pred eeEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeeccCcc-eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee
Q 019006 103 ILDLHWTTDGSQIISASPDK--TLRAWDVETGKQIKKMAEHNSF-VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 179 (347)
...+.|+ ++.+..+.+.+| .|+++|+.+++.+..+...... ...+... +..+.++.-.++.+.++|..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 4678888 666667777766 8999999999988877544332 1223332 34566666678999999999999888
Q ss_pred ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-----CceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-----DMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 180 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
+++....-..++ +++..|+.+..++.|.++|..+.+...++.-.. ..++.+.|. +|+..+..-.++.|.+.|
T Consensus 122 ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 122 SFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 876544323333 467777777667889999999888777654321 335567776 676555555678999999
Q ss_pred CCCCCCcCceeEEEeccc--------cccccceEEEEECCCCCEEEEeeC
Q 019006 255 MRPYAPQNRCVKILEGHQ--------HNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
..+ ++....+.... .........++|+|+++.|...+.
T Consensus 199 p~t----G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 199 PET----GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTT----CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCC----CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 874 34444443211 111245688999999887776664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-07 Score=76.08 Aligned_cols=183 Identities=10% Similarity=0.024 Sum_probs=119.4
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEEEe
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 222 (347)
+...+.+. +..++++.+.+|.|+.+|+++++.+..+ -..........++++.++... .++.+.+||..+.+.+.++
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34455554 3467888889999999999999887766 333333322233455555544 6789999999999988887
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc-cccceEEEEECCCCCEEEEeeCCCeEE
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN-FEKNLLKCGWSPDGSKVTAGSSDRMVY 301 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sgs~dg~i~ 301 (347)
..... -..++ +++..|+.+..++.|.++|..+.+. ...+.-.... .-..+..+.|. +|...+....++.|.
T Consensus 133 ~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v----~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL----VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCE----EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeE----EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 64322 23444 5678887777788999999875432 2222211111 11234556665 776555555688999
Q ss_pred EEeCCCceeeEEecCC------------c-cCeeeEEEcCCCCEEEEec
Q 019006 302 IWDTTSRRILYKLPGH------------T-GSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 302 vwd~~~~~~~~~~~~h------------~-~~v~~~~~~~~~~~l~s~s 337 (347)
+.|..+++.+.++.-. . ...+.+||+|+++.|.-++
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999998876532 1 2458999999866444444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-05 Score=76.21 Aligned_cols=266 Identities=7% Similarity=0.031 Sum_probs=158.3
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
|.++...+++.+.+ |..++-+..|+.............+...|.++...+++.+.+....+| +.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeec
Confidence 77787777776555 555545888886432211110112345688888887776555443444 8888987654322111
Q ss_pred c-------cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--------CCCceEEEEEcCCCCeEEEEec
Q 019006 140 E-------HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--------DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 140 ~-------~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
. ....+.++.....+ . +..|+.+ -+.+||..++....... ....|.++..++++ .+..|+.
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWigt~ 328 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLGTY 328 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEEES
T ss_pred CCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEEEC
Confidence 1 12346666555444 3 4455555 58888877654332211 12458888888765 4777888
Q ss_pred CCcEEEEeCCCCceEEEec------CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc-----c
Q 019006 205 DNDVKVWDLRKGEVSMTLQ------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-----H 273 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~~------~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-----~ 273 (347)
++-|..|+........-.. .....|.++...++|+.. .|..++.|..||.... . ...+.... .
T Consensus 329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ----R-FTSYTLQEDESARG 402 (795)
T ss_dssp SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC----C-EEEECCC------C
T ss_pred CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC----c-EEEEecCCCCcccC
Confidence 8889999876543222111 023458899988887744 4666667999986532 1 11221100 0
Q ss_pred ccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec----CCccCeeeEEEcCCCCEEEEec
Q 019006 274 NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP----GHTGSVNESVFHATEPVIGSCS 337 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s 337 (347)
.....|.++...++|.+|..|+.++-|.+||..+++...... -+...|.++...+++.+.+.+.
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~ 470 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL 470 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence 112467888888888866678887789999988876443221 1245788888888887665544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.3e-08 Score=87.09 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=140.6
Q ss_pred CCCEEEEec-CCCeEEEEECCCCceeeeeecc-CcceeEeec-C-CCCCCEEEEE-----------------cCCCceEE
Q 019006 111 DGSQIISAS-PDKTLRAWDVETGKQIKKMAEH-NSFVNSCCP-S-RRGPPLVVSG-----------------SDDGTAKL 169 (347)
Q Consensus 111 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~s~-----------------~~d~~i~i 169 (347)
||++++... .+..|.+.|+.+.+....+... ......+.+ . +++..+++++ -.++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 777776554 5677999999998876633221 122334444 2 4554444442 33457888
Q ss_pred EeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC--------------------------------------cEEEE
Q 019006 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN--------------------------------------DVKVW 211 (347)
Q Consensus 170 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~iw 211 (347)
+|..+.+....+.-......++++|+++++++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9998877666654323455677899999888877543 46677
Q ss_pred eCCC--Cce-EEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCC--------CcCceeEEEeccccccccce
Q 019006 212 DLRK--GEV-SMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYA--------PQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 212 d~~~--~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~ 279 (347)
|.++ ++. ...+.. .....++.++|||+++++++ .+.+|.++|+.... +........ ..-...
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-----~vG~gP 333 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-----ELGLGP 333 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-----BCCSCE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-----CCCCCc
Confidence 7766 333 333332 12357799999999887765 56899999987421 000111111 111346
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCC----------ceeeEEecCCccC-----eeeEEEcCCCCEEEEec
Q 019006 280 LKCGWSPDGSKVTAGSSDRMVYIWDTTS----------RRILYKLPGHTGS-----VNESVFHATEPVIGSCS 337 (347)
Q Consensus 280 ~~~~~s~~g~~l~sgs~dg~i~vwd~~~----------~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~s 337 (347)
..++|+|+|...++.-.|++|.+||+.. .+.+.+++-|-.+ -....++|++++|.++.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 7889999994344566899999999877 5677777765332 23446789999888765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-07 Score=84.62 Aligned_cols=258 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEeCc-ccceeEEEEcC--CCCEEEEecC------CCeEEEEECCCCceeeeee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLKGH-KNAILDLHWTT--DGSQIISASP------DKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 139 (347)
+..++.++.|+.|+.+|.... +........ ......+.-+| .+..++.+.. +|.|..+|..+|+.+.++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG-KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC-CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC-CEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 456778888999999987533 222222221 00000000011 1335555432 5899999999999887764
Q ss_pred ccCc--c----------------------------e-eEeecCCCCCCEEEEEcCCC-------------------ceEE
Q 019006 140 EHNS--F----------------------------V-NSCCPSRRGPPLVVSGSDDG-------------------TAKL 169 (347)
Q Consensus 140 ~~~~--~----------------------------v-~~~~~~~~~~~~~~s~~~d~-------------------~i~i 169 (347)
.... . + ...+..+. ..+++.++.++ .|..
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 3110 0 0 01122222 24666676665 3889
Q ss_pred EeCCCCCceeecCCC----------CceEEEEEcCCCC---eEEEEecCCcEEEEeCCCCceEEEecCCC----------
Q 019006 170 WDMRQRGAIQTFPDK----------YQITAVSFSDASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQ---------- 226 (347)
Q Consensus 170 wd~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 226 (347)
+|.++++.+..++.. .......+..+++ .++.++.+|.++++|.++++.+.......
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999998877655321 1222222223454 58889999999999999998774332111
Q ss_pred --Cc------------------------eeEEEECCCCCEEEEE------------------------------------
Q 019006 227 --DM------------------------ITGMSLSPDGSYLLTN------------------------------------ 244 (347)
Q Consensus 227 --~~------------------------i~~v~~~~~~~~l~t~------------------------------------ 244 (347)
.+ -..++++|+...++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 00 0125677766655531
Q ss_pred cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-ee
Q 019006 245 GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-NE 323 (347)
Q Consensus 245 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-~~ 323 (347)
..+|.|..||+.+.+ .+-..+... ......+...+.+++.|+.||.++.||..+++++.+++...+.. .-
T Consensus 435 ~~~g~l~A~D~~tG~----~~W~~~~~~-----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p 505 (668)
T 1kv9_A 435 VVSGALLAWDPVKQK----AAWKVPYPT-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP 505 (668)
T ss_dssp GCEEEEEEEETTTTE----EEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CccceEEEEeCCCCc----EEEEccCCC-----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCc
Confidence 123778888886432 222222111 11222344568899999999999999999999998887554322 34
Q ss_pred EEEcCCCC-EEEEec
Q 019006 324 SVFHATEP-VIGSCS 337 (347)
Q Consensus 324 ~~~~~~~~-~l~s~s 337 (347)
+.+..+++ +++.++
T Consensus 506 ~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 506 MTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 44555555 444433
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-07 Score=85.59 Aligned_cols=269 Identities=10% Similarity=0.040 Sum_probs=142.7
Q ss_pred EEEECC-CCCeEEEeeCCC-----------cEEEEeccCC-CeeeEEEeC-cccceeEEEEcCCCCEEEEecC-CCeEEE
Q 019006 62 TMKFNP-AGTVIASGSHDR-----------DIFLWHVHGD-CKNFMVLKG-HKNAILDLHWTTDGSQIISASP-DKTLRA 126 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~-----------~v~~w~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~-dg~i~i 126 (347)
+.++.| ++++++.|+.+. .+.+||...+ ......+.. +.....++++..++..++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445566 888888887653 4788887543 222333322 2233345678889999999884 458999
Q ss_pred EECCCCceeeeeecc-CcceeEeecCCCCCCEEEEEc-CC-----CceEEEeCCCCCceee-------cCCCCceEEEEE
Q 019006 127 WDVETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGS-DD-----GTAKLWDMRQRGAIQT-------FPDKYQITAVSF 192 (347)
Q Consensus 127 wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~-~d-----~~i~iwd~~~~~~~~~-------~~~~~~v~~~~~ 192 (347)
||..+.+-...-... ...-..++..++ +.+++.|+ .+ ..+.+||..+..-... +..... ...+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~--~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK--QGLY 346 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT--TGGG
T ss_pred ecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc--ccee
Confidence 998876432211111 111122233323 45777777 34 5688999876543221 111100 0111
Q ss_pred cCCCCeEEEEecCC---------cEEEEeCCCCceEEEecCCC---------CceeEEEEC-CCCCEEEEEcCCC-----
Q 019006 193 SDASDKIYTGGIDN---------DVKVWDLRKGEVSMTLQGHQ---------DMITGMSLS-PDGSYLLTNGMDC----- 248 (347)
Q Consensus 193 ~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~-~~~~~l~t~~~d~----- 248 (347)
..++..++.|+.+| .+..||..+.........+. ..-.++.|. .+++.++.||.++
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~ 426 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence 23344445554443 46788887664332221111 112334443 3667777777432
Q ss_pred ------cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----------CeEEEEeCCCceee
Q 019006 249 ------KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----------RMVYIWDTTSRRIL 311 (347)
Q Consensus 249 ------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----------g~i~vwd~~~~~~~ 311 (347)
.+.+||.... .... ..............+...|+|+.++.|+.+ ..+.+||..+.+-.
T Consensus 427 ~~~~~~~v~~yd~~~~----~W~~-~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 427 ATTNAHIITLGEPGTS----PNTV-FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CCCCEEEEECCSTTSC----CEEE-ECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred cCCcceEEEcCCCCCC----CeeE-EccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 5667765431 1211 110011111223344567899999999854 46899998876532
Q ss_pred E--EecCCccCeeeEEEcCCCCEEEEecC
Q 019006 312 Y--KLPGHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 312 ~--~~~~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
. .++.....-....+.|++++++.+|.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 12211222234456789999999885
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-06 Score=78.36 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=155.4
Q ss_pred CCeEEEeeC-CCcEEEEec-cCCCeeeEEEeCccc-c---------e-eEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 69 GTVIASGSH-DRDIFLWHV-HGDCKNFMVLKGHKN-A---------I-LDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 69 ~~~l~s~~~-d~~v~~w~~-~~~~~~~~~~~~h~~-~---------v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
+..+..++. ++.|+-+|. .... ..-....... . + ..+.. .+..++.++.|+.+..+|..+++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGK-IVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTS-EEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCcc-EEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 445555666 788888887 4322 2222211110 0 0 11222 3567888889999999999999987
Q ss_pred eeeeccCcce-eEeecCC--CCCCEEEEEcC------CCceEEEeCCCCCceeecCCCCce-------------------
Q 019006 136 KKMAEHNSFV-NSCCPSR--RGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDKYQI------------------- 187 (347)
Q Consensus 136 ~~~~~~~~~v-~~~~~~~--~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v------------------- 187 (347)
.+........ ..+...+ .+ ..++.++. ++.|..+|.++++.+..+......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EEecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 7654322100 0011011 12 24555554 789999999988876544321110
Q ss_pred --------------------EEEEEcCCCCeEEEEecC----------------CcEEEEeCCCCceEEEecCCCC----
Q 019006 188 --------------------TAVSFSDASDKIYTGGID----------------NDVKVWDLRKGEVSMTLQGHQD---- 227 (347)
Q Consensus 188 --------------------~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~---- 227 (347)
..+++++....++.++.+ +.|..+|.++++.+..++....
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235566766777766532 2599999999998877653210
Q ss_pred --ceeE---EEECCCCC---EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc-cc------------c-----------
Q 019006 228 --MITG---MSLSPDGS---YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-HN------------F----------- 275 (347)
Q Consensus 228 --~i~~---v~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~------------~----------- 275 (347)
.+.. +....+|+ .++.++.+|.+.++|..+.+. +...+... .. .
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~----~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL----IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE----EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE----EeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1111 22223563 567788899999999875432 11111100 00 0
Q ss_pred cc-----------ceEEEEECCCCCEEEEee-------------------------------------CCCeEEEEeCCC
Q 019006 276 EK-----------NLLKCGWSPDGSKVTAGS-------------------------------------SDRMVYIWDTTS 307 (347)
Q Consensus 276 ~~-----------~~~~~~~s~~g~~l~sgs-------------------------------------~dg~i~vwd~~~ 307 (347)
.. .-..++++|+..+|+..+ .+|.|+.||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 00 002356788877776653 357899999999
Q ss_pred ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 308 RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++.+.+++.. ..+....+...+..+..++.|+.|+.+|
T Consensus 454 G~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 9998877532 2333333344456666788999999887
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-06 Score=70.24 Aligned_cols=186 Identities=14% Similarity=0.084 Sum_probs=118.6
Q ss_pred cceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceE
Q 019006 143 SFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVS 219 (347)
Q Consensus 143 ~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 219 (347)
.+...+.+.. ..++.+.+.+| .|+.+|+.+++.+...+-........+...++.++... .++.+.+||..+.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3455566554 35666666654 89999999999888765443333333333456666544 6789999999999988
Q ss_pred EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccc-cceEEEEECCCCCEEEEeeCCC
Q 019006 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE-KNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 220 ~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~sgs~dg 298 (347)
.++..... =..++ +++..|+.+..++.|.++|..+++. ...+.-...... ..+..+.|. +|+..+....+.
T Consensus 99 ~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~----~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----VGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCE----EEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeE----EEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 88764322 23444 5666666666688999999876432 222222111111 234445554 666555555678
Q ss_pred eEEEEeCCCceeeEEecCC------------c-cCeeeEEEcCCCCEEEEecC
Q 019006 299 MVYIWDTTSRRILYKLPGH------------T-GSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h------------~-~~v~~~~~~~~~~~l~s~s~ 338 (347)
.|.+.|..+++.+..+.-. . ...+.+||+|+.+.|.-++.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999998876522 1 24589999998765555543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-06 Score=69.64 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=141.4
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeecc--------------------CcceeEeecCCCCCCEEEEE
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEH--------------------NSFVNSCCPSRRGPPLVVSG 161 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~~s~ 161 (347)
...+++|+++++.++++..++.|..|+..+++. ..+... ......+++.+.+..+++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence 456788999988788888899999998776543 222110 112344555542334444 4
Q ss_pred cCCCceEEEeCCCCCceeec---CC--CCceEEEEEcC-CCCeEEEEec-----------------CCcEEEEeCCCCce
Q 019006 162 SDDGTAKLWDMRQRGAIQTF---PD--KYQITAVSFSD-ASDKIYTGGI-----------------DNDVKVWDLRKGEV 218 (347)
Q Consensus 162 ~~d~~i~iwd~~~~~~~~~~---~~--~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~ 218 (347)
...+.+..+|..++...... .. ......+++++ ++...++-.. ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 44455788887644321111 11 12467899999 8865554322 36788999876654
Q ss_pred EEEecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC-
Q 019006 219 SMTLQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS- 296 (347)
Q Consensus 219 ~~~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~- 296 (347)
...... ....+.++++|++++|+.+ ...+.|..|++..... .. ...+.. ... ...+++.++|.+.++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~-~~~~~~----~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GT-AEVLVK----IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TC-EEEEEE----CSS-EEEEEECTTSCEEEEEEEE
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-Cc-cceEEe----CCC-CCCeEECCCCCEEEEecCc
Confidence 332221 1335789999999866554 5568999999864211 11 111211 112 566788999987776544
Q ss_pred ---------CCeEEEEeCCCceeeEEecCCc----cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 297 ---------DRMVYIWDTTSRRILYKLPGHT----GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 297 ---------dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.+.|..+|.. ++.+..+.... ..+..+++ .++.+.++...++.|..+++
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred ccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 4679999875 66666654432 34666776 46677777777777776653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-05 Score=65.69 Aligned_cols=215 Identities=7% Similarity=-0.064 Sum_probs=128.6
Q ss_pred CeEEEEECCCCcee-----eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCC
Q 019006 122 KTLRAWDVETGKQI-----KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDA 195 (347)
Q Consensus 122 g~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~ 195 (347)
+.|+.++++..... ..+.........+++.+.+..++++-..++.|..++............. .....++++++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 46777777654321 0111112233456666666667777778889999998765443333322 46788999997
Q ss_pred CCeEEEE-ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEEecc
Q 019006 196 SDKIYTG-GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKILEGH 271 (347)
Q Consensus 196 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~ 271 (347)
++.++.+ ...+.|.++++..................++++|++..|..+.. .+.|..+++... ....+...
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-----~~~~~~~~ 164 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-----NRRILAQD 164 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-----CCEEEECT
T ss_pred CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-----CcEEEEEC
Confidence 7766655 45678999998644322222222245688999997666555443 367888886521 11122111
Q ss_pred ccccccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 272 QHNFEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 272 ~~~~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
. ......++++|++..|..+ ...+.|+++|.........+.+ ......++.. .+.++++...++.|...|
T Consensus 165 --~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 165 --N-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp --T-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred --C-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence 1 1346788999988776554 4568999999986554433332 2234566664 455666655667777654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-05 Score=65.13 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=133.9
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC-C-eEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD-K-TLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~~~ 135 (347)
.....++|+++|+++++-..++.|..|+..+.... .+. -......+++.++++.+++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~--~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE--EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE--EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 56789999999998877778899999987653222 222 23467889999999866655432 2 4666777776643
Q ss_pred eeeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC-cee---------ec-CCCCceEEEEEcCCCCeEEEE-
Q 019006 136 KKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG-AIQ---------TF-PDKYQITAVSFSDASDKIYTG- 202 (347)
Q Consensus 136 ~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~---------~~-~~~~~v~~~~~~~~~~~l~~~- 202 (347)
..... ........+... +..++++-..++.|..+|...+. .+. .. ..-...+.+ +++++.++.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 22211 111222222222 23345555567888888876432 111 00 111234445 7777776655
Q ss_pred ecCCcEEEEeCCC-Cce--EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 203 GIDNDVKVWDLRK-GEV--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 203 ~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
...+.|..||+.. ++. ...+. .......|+++++|++.++....+.|.++|.. ..... +...... ....
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-----G~~~~-~~~~~~~-~~~p 257 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-----RSTTI-IAQAEQG-VIGS 257 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-----CCEEE-EECGGGT-CTTE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-----CCEEE-Eeecccc-cCCc
Confidence 4567899999864 321 11111 11245778999999887777777889999853 22211 1111111 1357
Q ss_pred EEEEEC---CCCCEEEEeeCCC
Q 019006 280 LKCGWS---PDGSKVTAGSSDR 298 (347)
Q Consensus 280 ~~~~~s---~~g~~l~sgs~dg 298 (347)
.+++|. |++..|+..+..+
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEEecccCCCCEEEEECCCC
Confidence 888998 8888777666543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-06 Score=75.40 Aligned_cols=269 Identities=13% Similarity=0.089 Sum_probs=154.5
Q ss_pred CCeEEEeeC-CCcEEEEec-cCCCeeeEEEeCccc-----------ceeEEEEcCCCCE----EEEecCCCeEEEEECCC
Q 019006 69 GTVIASGSH-DRDIFLWHV-HGDCKNFMVLKGHKN-----------AILDLHWTTDGSQ----IISASPDKTLRAWDVET 131 (347)
Q Consensus 69 ~~~l~s~~~-d~~v~~w~~-~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~----l~s~~~dg~i~iwd~~~ 131 (347)
+..+..++. ++.|+-+|. ... +..-....... ....++.+|.+.. |+.++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 445556666 788888887 432 22222221110 0122445444444 88888999999999999
Q ss_pred CceeeeeeccCc----ceeEeecCCCCCCEEEEEc------CCCceEEEeCCCCCceeecCCCCce--------------
Q 019006 132 GKQIKKMAEHNS----FVNSCCPSRRGPPLVVSGS------DDGTAKLWDMRQRGAIQTFPDKYQI-------------- 187 (347)
Q Consensus 132 ~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~~~~~v-------------- 187 (347)
|+.+.+...... .+.. .+.-.+ ..++.++ .++.|+.+|.++++.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~s-sP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTI-APYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCS-CCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeec-CCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 998776543221 1110 000012 2445554 3799999999988876544321110
Q ss_pred -------------------------EEEEEcCCCCeEEEEecC----------------CcEEEEeCCCCceEEEecCCC
Q 019006 188 -------------------------TAVSFSDASDKIYTGGID----------------NDVKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 188 -------------------------~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 226 (347)
...++++....++.++.+ +.|.-+|.++++....++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 134566777788877655 379999999999887766432
Q ss_pred C----------ceeEEEEC-CCC---CEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc-----------cc--c----
Q 019006 227 D----------MITGMSLS-PDG---SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ-----------HN--F---- 275 (347)
Q Consensus 227 ~----------~i~~v~~~-~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-----------~~--~---- 275 (347)
. ++. +... .+| ..++.++.+|.+.+.|.++.+.. ...+... .. +
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l----w~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV----SANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE----EEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe----ecccccCCcccccccccCCCceeeccc
Confidence 1 111 2222 456 46777889999999998754321 1111000 00 0
Q ss_pred -------c-----------cceEEEEECCCCCEEEEe---------------------------------e------CCC
Q 019006 276 -------E-----------KNLLKCGWSPDGSKVTAG---------------------------------S------SDR 298 (347)
Q Consensus 276 -------~-----------~~~~~~~~s~~g~~l~sg---------------------------------s------~dg 298 (347)
. ..-..++++|+..++++. + .+|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 0 001134566666655442 1 357
Q ss_pred eEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 299 MVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 299 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.|+-||+.+++.+.+.+. ..++..-.....+.++..++.|+.++.+|
T Consensus 454 ~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred eEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 899999999999887652 12222222333455666788899988876
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-06 Score=77.40 Aligned_cols=252 Identities=10% Similarity=0.018 Sum_probs=142.2
Q ss_pred CCeEEEeeCCCcEEEEeccCCCeeeEEEe--Cccc--ceeEEEEcC--CCCEEEEecC------CCeEEEEECCCCceee
Q 019006 69 GTVIASGSHDRDIFLWHVHGDCKNFMVLK--GHKN--AILDLHWTT--DGSQIISASP------DKTLRAWDVETGKQIK 136 (347)
Q Consensus 69 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~--~h~~--~v~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~~~ 136 (347)
+..++.++.|+.++.+|.... +...... .+.. .+.+ +| .+..++.++. ++.|..+|..+++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~---~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG-KINWEVEVCDPKVGSTLTQ---APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCS---CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC-CEEEEecCCCCCccceecc---CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 456777778888888887432 2222221 2111 1111 11 1345555544 7999999999999887
Q ss_pred eeeccCcce--------------------------------------eEeecCCCCCCEEEEEcCC--------------
Q 019006 137 KMAEHNSFV--------------------------------------NSCCPSRRGPPLVVSGSDD-------------- 164 (347)
Q Consensus 137 ~~~~~~~~v--------------------------------------~~~~~~~~~~~~~~s~~~d-------------- 164 (347)
++....... ...+..+.. .+++.++.+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCce
Confidence 664322110 001111222 244444422
Q ss_pred --CceEEEeCCCCCceeecCCC----------CceEEEEEcCCCC---eEEEEecCCcEEEEeCCCCceEEEecCCC---
Q 019006 165 --GTAKLWDMRQRGAIQTFPDK----------YQITAVSFSDASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--- 226 (347)
Q Consensus 165 --~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 226 (347)
+.|..+|.++++.+..++.. ....-+....+++ .++.++.+|.++++|..+++.+.......
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 25888999988876554321 1111122223553 56778899999999999998776543211
Q ss_pred ----------Cce--------------------------eEEEECCCCCEEEEEc-------------------------
Q 019006 227 ----------DMI--------------------------TGMSLSPDGSYLLTNG------------------------- 245 (347)
Q Consensus 227 ----------~~i--------------------------~~v~~~~~~~~l~t~~------------------------- 245 (347)
.++ ..++++|+...++...
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 011 2357778777766653
Q ss_pred ------------CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE
Q 019006 246 ------------MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK 313 (347)
Q Consensus 246 ------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~ 313 (347)
.++.|..||..+.+ ..-...... .+....+...+.+++.++.||.|+.||..+++++.+
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~----~~W~~~~~~-----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGK----AKWTKWEKF-----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCC----EEEEEEESS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eeccCccccCCCCCCeEEEEECCCCC----EEEEecCCC-----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 24678888876432 222221111 111111223567888899999999999999999988
Q ss_pred ecCCccC-eeeEEEcCCCCEEE
Q 019006 314 LPGHTGS-VNESVFHATEPVIG 334 (347)
Q Consensus 314 ~~~h~~~-v~~~~~~~~~~~l~ 334 (347)
++..... -.-+.+..++++++
T Consensus 501 ~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 501 FKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EECSSCCCSCCEEEEETTEEEE
T ss_pred EeCCCCcEeeeEEEEECCEEEE
Confidence 7644322 23344656666444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-05 Score=65.30 Aligned_cols=185 Identities=11% Similarity=0.116 Sum_probs=123.6
Q ss_pred ceeEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeeeeccCcc-eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce
Q 019006 102 AILDLHWTTDGSQIISASPDK--TLRAWDVETGKQIKKMAEHNSF-VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~ 178 (347)
-...+.|++ +....+.+.+| .|+.+|+.+++.+..+...... -..+... +..+....-.++.+.++|..+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 356788886 55566666654 8999999999988877544332 2223332 3456666778899999999999988
Q ss_pred eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCC-----CceeEEEECCCCCEEEEEcCCCcEEEE
Q 019006 179 QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ-----DMITGMSLSPDGSYLLTNGMDCKLCIW 253 (347)
Q Consensus 179 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~~~~~~l~t~~~d~~i~~w 253 (347)
.+++....-..++ +++..|+.+..++.|.++|..+.+...++.-.. ..++.+.+. +|+..+..-.+..|.+.
T Consensus 99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI 175 (243)
T 3mbr_X 99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI 175 (243)
T ss_dssp EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence 8887654333444 456777777778899999999888776664321 345667765 56655555567789999
Q ss_pred eCCCCCCcCceeEEEeccc---------cccccceEEEEECCCCCEEEEeeC
Q 019006 254 DMRPYAPQNRCVKILEGHQ---------HNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
|..+ ++.+..+.... ....+....++|+|+++.|...+.
T Consensus 176 Dp~t----G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 176 DPAS----GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTT----CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCC----CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9874 33444443211 112246788999998877766553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-05 Score=72.33 Aligned_cols=248 Identities=12% Similarity=0.041 Sum_probs=138.5
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEe--Cccc--ceeE-EEEcCCCCEEEEec------CCCeEEEEECCCCceeeeeec
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLK--GHKN--AILD-LHWTTDGSQIISAS------PDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~--~h~~--~v~~-~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 140 (347)
++.++.|+.++.+|.... +...... .+.. .+.+ -... ++ .++.++ .+|.|+.+|..+|+.+.++..
T Consensus 124 V~v~t~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG-ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCC-CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 777778888888887432 2222221 1110 1111 0111 33 555554 489999999999998876653
Q ss_pred cCcce-------------------------------------e-EeecCCCCCCEEEEEcCC----------------Cc
Q 019006 141 HNSFV-------------------------------------N-SCCPSRRGPPLVVSGSDD----------------GT 166 (347)
Q Consensus 141 ~~~~v-------------------------------------~-~~~~~~~~~~~~~s~~~d----------------~~ 166 (347)
..... . .....+. ..+++.++.+ +.
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~-~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG-TNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC-CCEEEEeCCCCccccCcccCCCccccce
Confidence 32110 0 0011112 2355555544 37
Q ss_pred eEEEeCCCCCceeecCCCC----------ceEEEEEc-CCC---CeEEEEecCCcEEEEeCCCCceEEEecCCC------
Q 019006 167 AKLWDMRQRGAIQTFPDKY----------QITAVSFS-DAS---DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ------ 226 (347)
Q Consensus 167 i~iwd~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------ 226 (347)
|..+|.++++.+..++... ...-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 8889999988765543210 11122222 456 457778899999999999998776543210
Q ss_pred -------Cce--------------------------eEEEECCCCCEEEEEc----------------------------
Q 019006 227 -------DMI--------------------------TGMSLSPDGSYLLTNG---------------------------- 245 (347)
Q Consensus 227 -------~~i--------------------------~~v~~~~~~~~l~t~~---------------------------- 245 (347)
.++ ..++++|+...+++..
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence 011 2456777666655432
Q ss_pred -----------CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe
Q 019006 246 -----------MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 246 -----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~ 314 (347)
.+|.|.-||+.+.+. +-..+... ....-.....+.+++.|+.||.++.||.++++++.++
T Consensus 440 ~~p~~~~~~~~~~G~l~A~D~~tG~~----~W~~~~~~-----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 440 PGPKGDRQNYEGLGQIKAYNAITGDY----KWEKMERF-----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCE----EEEEEESS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCCcCCcccCCCcCeEEEEECCCCCE----EeEecCCC-----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 235666677654321 11111000 0111111235778888999999999999999999887
Q ss_pred cCCccCe-eeEEEcCCCCE
Q 019006 315 PGHTGSV-NESVFHATEPV 332 (347)
Q Consensus 315 ~~h~~~v-~~~~~~~~~~~ 332 (347)
+-..+.+ .-+.|..++++
T Consensus 511 ~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp ECSSCCCSCCEEEEETTEE
T ss_pred eCCCCcEeccEEEEeCCEE
Confidence 6443322 34556666653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-05 Score=63.11 Aligned_cols=221 Identities=11% Similarity=0.059 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCcee
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQ 179 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~ 179 (347)
....++|+++++.+++-..++.|..||.... ....+ ........+++.+++. ++++..... .|..+|..++....
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEE
Confidence 4568889999887777768889999987653 22222 2233455566666654 555543322 36666766655432
Q ss_pred e--cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce-EEEec---------CCCCceeEEEECCCCCEEEE-EcC
Q 019006 180 T--FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQ---------GHQDMITGMSLSPDGSYLLT-NGM 246 (347)
Q Consensus 180 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~i~~v~~~~~~~~l~t-~~~ 246 (347)
. .+.......++..+.+..+++-..++.|+.+|...++. ..... ..-...+.+ ++++++|+. -..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 2 22222234455554443344444688999999875432 11110 111234555 778876654 456
Q ss_pred CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee--eEEecCCccCeeeE
Q 019006 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI--LYKLPGHTGSVNES 324 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~ 324 (347)
.+.|..+|+...... .....+... .....++++++|.+.++....+.|.++|.. ++. +..+...-....++
T Consensus 188 ~~~I~~~~~~~~g~~-~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKP-GEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTEEEEEEBCTTSCB-CCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCEEEEEEeCCCCCC-CccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 679999998631100 011111110 123456788999988887778899999976 554 22343333568899
Q ss_pred EEc---CCCCEEE
Q 019006 325 VFH---ATEPVIG 334 (347)
Q Consensus 325 ~~~---~~~~~l~ 334 (347)
+|. |++..|.
T Consensus 261 a~~g~~~d~~~Ly 273 (306)
T 2p4o_A 261 AFGQTEGDCTAIY 273 (306)
T ss_dssp EECCSTTTTTEEE
T ss_pred EEecccCCCCEEE
Confidence 998 7865444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00018 Score=63.21 Aligned_cols=238 Identities=7% Similarity=-0.041 Sum_probs=140.4
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
...|+..++.+... ..+.........++|++.+..|+ +-...+.|..++.........+.........++..+.+..
T Consensus 95 ~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 95 RIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp BSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred CccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence 35677777754322 22222334578999997655555 5456788999998765432222222222333455555556
Q ss_pred EEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEec-C-CcEEEEeCCCCceEEEecCCCCceeEEE
Q 019006 157 LVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGI-D-NDVKVWDLRKGEVSMTLQGHQDMITGMS 233 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~v~ 233 (347)
++++-...+.|.+.++........+.. ......++++|.+..|+.... . +.|+.+++............-...+.|+
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 777777778888888765443333332 246788999988777765543 3 6788888864433333322233468999
Q ss_pred ECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 234 LSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 234 ~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
|+|++..|..+ ...+.|..+|+... .+ ...+... ......+++ ..+.+..+-...+.|..++..+++.+.
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~---~~-~~~~~~~----~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGS---HR-KAVISQG----LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSC---SC-EEEECSS----CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCC---ee-EEEEECC----CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence 99876655544 55678999987531 11 1111111 123455666 344555666677889999977777666
Q ss_pred EecCCccCeeeEEE
Q 019006 313 KLPGHTGSVNESVF 326 (347)
Q Consensus 313 ~~~~h~~~v~~~~~ 326 (347)
.+...-.....+++
T Consensus 324 ~i~~~~~~p~gi~v 337 (386)
T 3v65_B 324 IIRNKLHFPMDIHT 337 (386)
T ss_dssp EEECSCSCCCCEEE
T ss_pred EEccCCCCCceEEE
Confidence 66544334445544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00019 Score=62.17 Aligned_cols=253 Identities=7% Similarity=-0.021 Sum_probs=144.9
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeee
Q 019006 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMA 139 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~ 139 (347)
.|.+..+++.++++ ....|+..++.+.. ...+.........++|++.+..|+ +-...+.|..+++........+.
T Consensus 37 ~C~~~~~~~~ll~~--~~~~I~~i~~~g~~--~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPEPVLLFA--NRIDIRQVLPHRSE--YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSCCEEEEE--CBSCEEEECTTSCC--EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccCceeEee--cccceEEEeCCCCe--eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444453333433 23457777775432 222222234578999997666555 44567889999987654322222
Q ss_pred ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEe-cC-CcEEEEeCCCC
Q 019006 140 EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGG-ID-NDVKVWDLRKG 216 (347)
Q Consensus 140 ~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~ 216 (347)
........++..+.+..++++-...+.|.+.++.......... .......++++|.+..++... .. +.|..+++...
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2222334455555556677777777889999887554333332 234678899999777666554 33 77888887643
Q ss_pred ceEEEecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.........-...+.++++|++..|..+ ...+.|..+|+... .+ ...+... ......+++ ..+....+-.
T Consensus 193 ~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~-~~~~~~~----~~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 193 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HR-KAVISQG----LPHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SC-EEEECSS----CSSEEEEEE-ETTEEEEEET
T ss_pred CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ce-EEEEeCC----CCCceEEEE-ECCEEEEecC
Confidence 3222222223346889999876665554 45678999987531 11 1111111 123455566 3445555666
Q ss_pred CCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 296 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
..+.|..++..+++.+..+...-.....+++
T Consensus 264 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 264 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 7788999987677665555433333444443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-05 Score=71.37 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=97.1
Q ss_pred CceEEEeCCCCCceeecCC---C-------CceEEEEEc-CCCC---eEEEEecCCcEEEEeCCCCceEEEecCCC----
Q 019006 165 GTAKLWDMRQRGAIQTFPD---K-------YQITAVSFS-DASD---KIYTGGIDNDVKVWDLRKGEVSMTLQGHQ---- 226 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 226 (347)
+.|..+|.++++.+..++. . ....-+... .+++ .++.++.+|.++++|.++++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5789999999887766532 1 011112222 3553 67789999999999999998776543321
Q ss_pred ---------Cc--------------------------------eeEEEECCCCCEEEEEc--------------------
Q 019006 227 ---------DM--------------------------------ITGMSLSPDGSYLLTNG-------------------- 245 (347)
Q Consensus 227 ---------~~--------------------------------i~~v~~~~~~~~l~t~~-------------------- 245 (347)
.+ -..++++|+...+++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00 01346666655554432
Q ss_pred -------------CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 246 -------------MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 246 -------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
.+|.|.-||+.+.+. +-..+......... ....+.+++.|+.||.++.||.++++++.
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~----~W~~~~~~~~~~g~-----~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKV----VWEHKEHLPLWAGV-----LATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCE----EEEEEESSCCCSCC-----EEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCE----EEEecCCCCCcccc-----eEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 256788888765432 21121111111111 12246788889999999999999999999
Q ss_pred EecCCccCe-eeEEEcCCCCEE
Q 019006 313 KLPGHTGSV-NESVFHATEPVI 333 (347)
Q Consensus 313 ~~~~h~~~v-~~~~~~~~~~~l 333 (347)
+++...+.. .-+.|..++++.
T Consensus 522 ~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 522 KFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEECSSCCCSCCEEEEETTEEE
T ss_pred EecCCCCcccCceEEEECCEEE
Confidence 887654332 346676777633
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00045 Score=66.68 Aligned_cols=263 Identities=10% Similarity=0.066 Sum_probs=155.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe----------CcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK----------GHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
...|.++...++|.+ -.|..++-|..++..... +..+. .....|.++...++|... .|..++-+..
T Consensus 312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEE
Confidence 456899988888764 456666678888764322 22221 023468899888877654 4554555888
Q ss_pred EECCCCceeeee---eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC----CCCceEEEEEcCCCCeE
Q 019006 127 WDVETGKQIKKM---AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP----DKYQITAVSFSDASDKI 199 (347)
Q Consensus 127 wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l 199 (347)
|+..++...... ......|.++.....+ . +..|+.++-+..+|..+++.. .+. ....|.++..++++ .+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~l 463 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-KI 463 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-EE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-CE
Confidence 887654322110 1122445555554443 3 455777667888887665432 222 23468888887765 46
Q ss_pred EEEecCCcEEEEeCCCCceEEEecCC-----CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 200 YTGGIDNDVKVWDLRKGEVSMTLQGH-----QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
..|+. +.|..||..+++........ ...|.++...++|+..+....+ .+..+|.... ....+......
T Consensus 464 wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~-Gl~~~~~~~~-----~~~~~~~~~~l 536 (781)
T 3v9f_A 464 WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG-GVGIYTPDMQ-----LVRKFNQYEGF 536 (781)
T ss_dssp EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS-CEEEECTTCC-----EEEEECTTTTC
T ss_pred EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC-CEEEEeCCCC-----eEEEccCCCCC
Confidence 66666 56899998776543322211 3568899998888765554334 4777876421 12223221111
Q ss_pred cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC----ccCeeeEEEcCCCCEEEEe
Q 019006 275 FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH----TGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~ 336 (347)
....+.++...++|.+.++.. +|.|..||..+++.. .+... ...|..+...+++.+.+++
T Consensus 537 ~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 537 CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc
Confidence 234678888888888666544 666599998776543 22211 2357788888777765554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.5e-05 Score=68.67 Aligned_cols=230 Identities=16% Similarity=0.110 Sum_probs=136.7
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCc----cee---EeecC-CCCCCEEEEEc------CCCceEEEeCCCCCc
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNS----FVN---SCCPS-RRGPPLVVSGS------DDGTAKLWDMRQRGA 177 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~---~~~~~-~~~~~~~~s~~------~d~~i~iwd~~~~~~ 177 (347)
+..++.++.|+.+..+|..+|+.+.+...... .+. .+.-. ..+...++.++ .++.+..+|.++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56788888999999999999998776543321 010 01111 01111555554 378999999988876
Q ss_pred eeecCCCC------------------------------------------ceEEEEEcCCCCeEEEEec-----------
Q 019006 178 IQTFPDKY------------------------------------------QITAVSFSDASDKIYTGGI----------- 204 (347)
Q Consensus 178 ~~~~~~~~------------------------------------------~v~~~~~~~~~~~l~~~~~----------- 204 (347)
+...+... .-..+++++....++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 65432210 0123456677777776653
Q ss_pred ---------C----CcEEEEeCCCCceEEEecC--CCC----ceeE-EEEC---CCCC---EEEEEcCCCcEEEEeCCCC
Q 019006 205 ---------D----NDVKVWDLRKGEVSMTLQG--HQD----MITG-MSLS---PDGS---YLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 205 ---------d----g~i~iwd~~~~~~~~~~~~--~~~----~i~~-v~~~---~~~~---~l~t~~~d~~i~~wd~~~~ 258 (347)
| +.|.-+|.++++.+..++. |.. .+.. +.+. .+|+ .++.++.+|.+.++|..+.
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5799999999998887753 211 1111 1122 4564 7888899999999998754
Q ss_pred CCcCceeEEEeccc---------------------c---------ccccc-----------eEEEEECCCCCEEEEee--
Q 019006 259 APQNRCVKILEGHQ---------------------H---------NFEKN-----------LLKCGWSPDGSKVTAGS-- 295 (347)
Q Consensus 259 ~~~~~~~~~~~~~~---------------------~---------~~~~~-----------~~~~~~s~~g~~l~sgs-- 295 (347)
+.. ....... . ..... -..++++|+..++++..
T Consensus 357 ~~l----w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 357 KLQ----NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp CEE----EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CEe----cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 321 1111100 0 00000 01345677665555432
Q ss_pred -------------------------------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 296 -------------------------------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 296 -------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
.+|.|+-||+.+++.+.+.+.+. .+..-.....+.++..++.|+.++.
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 36889999999999988776432 2322222234567777889999988
Q ss_pred ec
Q 019006 345 GE 346 (347)
Q Consensus 345 ~~ 346 (347)
+|
T Consensus 512 ~D 513 (582)
T 1flg_A 512 FD 513 (582)
T ss_dssp EE
T ss_pred EE
Confidence 77
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00093 Score=64.47 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=154.3
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee-eEEE-----eCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN-FMVL-----KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~-~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..|.++...++|.+.+. ..+ -+.+|+....... +... ......|.++...++|.+.+ |...+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence 45888888888876654 344 5788886432111 1100 01235688998888876554 55534577888766
Q ss_pred Cceeeeee--------------ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-------C---CCCce
Q 019006 132 GKQIKKMA--------------EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-------P---DKYQI 187 (347)
Q Consensus 132 ~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-------~---~~~~v 187 (347)
.+...... .....|.++.....+ .+..|+.++-|..++.......... . ....|
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 54221110 122345555555443 3666777777888887654432211 1 12358
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe---cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL---QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 264 (347)
.++..++++ .+..|+.++-|..||..++....-. ......|.++...++++..+ |..++.+..+|.... +
T Consensus 366 ~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~----~- 438 (781)
T 3v9f_A 366 SSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK----K- 438 (781)
T ss_dssp EEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC----E-
T ss_pred EEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC----c-
Confidence 888887665 5677887777999997654322111 11235688898887776554 565667888886531 1
Q ss_pred eEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCC-----ccCeeeEEEcCCCCEEEEecCC
Q 019006 265 VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH-----TGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~D 339 (347)
...+... ......+.++...++|.+.+ |+. +-|..||..+++........ ...|.++...+++.+.+.+..+
T Consensus 439 ~~~~~~~-~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~ 515 (781)
T 3v9f_A 439 FQIIELE-KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG 515 (781)
T ss_dssp EEECCST-TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred EEEeccC-CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC
Confidence 1222110 11124577887788876555 444 46999998876654322211 3568888888888766554434
Q ss_pred C
Q 019006 340 K 340 (347)
Q Consensus 340 ~ 340 (347)
|
T Consensus 516 G 516 (781)
T 3v9f_A 516 G 516 (781)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.8e-05 Score=66.56 Aligned_cols=240 Identities=9% Similarity=0.048 Sum_probs=131.4
Q ss_pred eeEEEEcC-CCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCc----eEEEeCCCCCc
Q 019006 103 ILDLHWTT-DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT----AKLWDMRQRGA 177 (347)
Q Consensus 103 v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~----i~iwd~~~~~~ 177 (347)
...|+++| ++..|+.+...+.|+.+|+..+.. ..+.........+++.+.+..++++...++. +..++.. +..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 46889998 455666665558899999876553 3333333445567777766546666543332 3333332 221
Q ss_pred e--eecCCCCceEEEEEcC-CCCeEEEEecCCcEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEE-EEcCCCcEEE
Q 019006 178 I--QTFPDKYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLL-TNGMDCKLCI 252 (347)
Q Consensus 178 ~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~-t~~~d~~i~~ 252 (347)
. ..+........++++| ++..+++-..++.|+.|+...+....... ........++|+|++++|+ +-...+.|..
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 1 2222223456788999 45545555567889999987665422211 1123467899999999554 4456778999
Q ss_pred EeCCCCCCcCceeEEEecc------c------cccccceE-EEEEC--------CCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 253 WDMRPYAPQNRCVKILEGH------Q------HNFEKNLL-KCGWS--------PDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~------~------~~~~~~~~-~~~~s--------~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
++.............+.+. . ..+. ... .++.. ++|.+.++=...+.|+.++. .+...
T Consensus 297 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~-~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~ 374 (430)
T 3tc9_A 297 SDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH-APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT 374 (430)
T ss_dssp EEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS-SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred EeCCcccccccceEEEeccCCCCCCCCCCCcceEeC-CCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence 8765211000001111111 0 0011 122 33332 34566666666778888884 45433
Q ss_pred EEecC----C----c---------cCeeeEEEcC-CCCEEEEecCCCcEEeec
Q 019006 312 YKLPG----H----T---------GSVNESVFHA-TEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 312 ~~~~~----h----~---------~~v~~~~~~~-~~~~l~s~s~D~~i~i~~ 346 (347)
..... . . .....+++.| ++.++++-..++.|+..+
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 22210 0 1 1467899998 466666666667776543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00031 Score=62.76 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=133.1
Q ss_pred eeEEEEcCC--CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC---Cc-eEEEeCCCCC
Q 019006 103 ILDLHWTTD--GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD---GT-AKLWDMRQRG 176 (347)
Q Consensus 103 v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---~~-i~iwd~~~~~ 176 (347)
...|+|+|+ +..|+.+...+.|+.+|..+++.. .+.........+++.+.+. ++++-... .. +...+.....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 568999984 445555544488999998776543 3333334455677777665 65554322 11 2222221111
Q ss_pred c-eeecCCCCceEEEEEcCCCCeEE-EEecCCcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEE-EEcCCCcEE
Q 019006 177 A-IQTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLL-TNGMDCKLC 251 (347)
Q Consensus 177 ~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~-t~~~d~~i~ 251 (347)
. ...+........+++++....|+ +-..++.|+.+|..++.....+. +....-..++|+|++++|+ +-...+.|.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 0 01111223356678898444455 44567789999988676522221 1112234699999999554 445567899
Q ss_pred EEeCCCCCCcCceeEEEecc--ccc---------cccceEEEEE---------CCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 252 IWDMRPYAPQNRCVKILEGH--QHN---------FEKNLLKCGW---------SPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~---------s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
.++.............+.+. ... .-.....+++ .++|.+.++-...+.|+.++. ++.+.
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 98865211100001111111 000 0123566788 777777777777889999985 45433
Q ss_pred EEecCC------------------ccCeeeEEEc-CCCCEEEEecCCCcEEeec
Q 019006 312 YKLPGH------------------TGSVNESVFH-ATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 312 ~~~~~h------------------~~~v~~~~~~-~~~~~l~s~s~D~~i~i~~ 346 (347)
.+.+. -.....+++. +++.++++=..++.|+..+
T Consensus 378 -t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 378 -TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp -EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred -EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 32221 1235678888 6666666666667776543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00058 Score=58.27 Aligned_cols=229 Identities=9% Similarity=0.050 Sum_probs=133.1
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeee-eeccCcceeEeecCCCCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKK-MAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 155 (347)
...|+..++.+.......+.........++|++.+..| .+-...+.|..++......... +...-.....++..+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 35677777765421121121222356789999855554 4555678899999876532111 111112233455555555
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEecCCCCceeEE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQGHQDMITGM 232 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 232 (347)
.++++-...+.|.++++......... ........++++|.+..++... ..+.|..+++............-...+.|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 67777777788999998754333222 2334678899998877777665 35788888876433222222222346889
Q ss_pred EECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 233 SLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 233 ~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
++++++..|..+ ...+.|..+|+... ..+. ..... ......+++.. +.++.+-...+.|..++..+++.+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~--~~~~~----~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGT--NRQA--VVKGS----LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC--SCEE--EECSC----CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCC--ceEE--EecCC----CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 999976666554 55678999997631 1111 11111 12344555542 344455566788999998777665
Q ss_pred EEec
Q 019006 312 YKLP 315 (347)
Q Consensus 312 ~~~~ 315 (347)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.38 E-value=0.001 Score=58.71 Aligned_cols=229 Identities=9% Similarity=0.031 Sum_probs=135.4
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCc----eeeeeeccCcceeEeecCCC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPSRR 153 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~ 153 (347)
..|+..++.+.. ...+......+..|+|++.+..|+-+ ..++.|+.+++.... ....+.........++....
T Consensus 92 ~~I~~i~l~~~~--~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 92 HEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp TEEEEECTTSCS--CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred ceeEEEccCCcc--eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 567777775432 22233344567899999866655544 566889888886521 11112212233444555554
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec--CCcEEEEeCCCCceEEEecCCCCcee
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI--DNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
+..++++-...+.|.+.++........+. .......++++|.+..|+.... .+.|...++............-...+
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 55677777778889999887654433333 2345788999998777776542 47899999865443333333334578
Q ss_pred EEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 231 GMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 231 ~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
.|++++++..|+.+ ...+.|..+|+... ..+ ....... . ......+++. .+.++.+-...+.|..+|..+++
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~--~~~~~~~-~-l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNGG--NRK--TILEDEK-R-LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC--CCE--EEEECSS-T-TSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccE--EEEeCCC-C-CCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 99999877766655 45678999997531 111 1111110 0 1223455552 33444555667889999987776
Q ss_pred eeEEecC
Q 019006 310 ILYKLPG 316 (347)
Q Consensus 310 ~~~~~~~ 316 (347)
.+..+..
T Consensus 323 ~~~~i~~ 329 (400)
T 3p5b_L 323 DVNLLAE 329 (400)
T ss_dssp CCEEEEC
T ss_pred ceEEEec
Confidence 6655543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00067 Score=60.53 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=92.2
Q ss_pred cEEEEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CC----eEEEEECCCC
Q 019006 59 AVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DK----TLRAWDVETG 132 (347)
Q Consensus 59 ~V~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~ 132 (347)
....|+++| ++..|..+...+.|+.++..+.. +..+.........++|++++++|+.+.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456888998 45555555555778888875432 2233334456789999999996665554 22 2333443 22
Q ss_pred cee--eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee--ecCCCCceEEEEEcCCCCeEEEE-ecCCc
Q 019006 133 KQI--KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ--TFPDKYQITAVSFSDASDKIYTG-GIDND 207 (347)
Q Consensus 133 ~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 207 (347)
... ..+. .......++..+.+..++++-..++.|..++...+.... ..........++++|++++++.+ ...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 211 1221 112233455666456677777778899999987654322 22223456789999999966554 46678
Q ss_pred EEEEeCC
Q 019006 208 VKVWDLR 214 (347)
Q Consensus 208 i~iwd~~ 214 (347)
|..++..
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9998765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0011 Score=56.38 Aligned_cols=228 Identities=9% Similarity=0.031 Sum_probs=131.0
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCC---Cceeeeee-ccCcceeEeecCCC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVET---GKQIKKMA-EHNSFVNSCCPSRR 153 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~---~~~~~~~~-~~~~~v~~~~~~~~ 153 (347)
..|+..++.+.. ....+ ..-.....++|++.+..|+ +-..++.|..+++.. +.....+. ........++..+.
T Consensus 10 ~~I~~i~~~~~~-~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSE-YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCC-CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcc-eEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 457777775432 11222 2334578999998665555 445668999999875 12222221 11123344555444
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecC--CcEEEEeCCCCceEEEecCCCCcee
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGID--NDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
+..++++-...+.|.+.|+.......... .......++++|.+..++.+... +.|..+++............-...+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCce
Confidence 55667777778899999987543322222 23467889999977777665543 6888888754332222222234568
Q ss_pred EEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 231 GMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 231 ~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
.+++++++..|+.+ ...+.|..+|+... ..+. ...... . ......+++. .+.+.++-...+.|..++..+++
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~--~~~~~~-~-~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKT--ILEDEK-R-LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC--SCEE--EEECTT-T-TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCCC--ceEE--EeecCC-c-cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 99999877666554 45678999998631 1111 111110 0 1234455564 35555566677899999987776
Q ss_pred eeEEec
Q 019006 310 ILYKLP 315 (347)
Q Consensus 310 ~~~~~~ 315 (347)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 555554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00043 Score=56.71 Aligned_cols=199 Identities=9% Similarity=0.067 Sum_probs=122.4
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC--CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce---
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV--- 218 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 218 (347)
.+..+++.+.+..+++....++.|...|.. ++.+..++- ....-.+++.+++.++++.-.++.+.++++.....
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 455566666666677777788899999987 666666543 34677888888776656655667899998754331
Q ss_pred EEEe--c----CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc---ccccccceEEEEECCCC-
Q 019006 219 SMTL--Q----GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH---QHNFEKNLLKCGWSPDG- 288 (347)
Q Consensus 219 ~~~~--~----~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g- 288 (347)
.... . ..+.....++|+|.++.|.++.......+|.+... .....+..+... .......+..++++|..
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-LSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-TCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-ccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 1111 1 12334689999999887777766555556555411 111112222110 00112356788899864
Q ss_pred CEEEEeeCCCeEEEEeCCCceeeEEe--c-CCc------cCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRILYKL--P-GHT------GSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~~~~~--~-~h~------~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.+++....++.|..+|... +.+..+ . +.. .---.++|.+++.+.++ ++-..+|.++
T Consensus 186 ~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 5556666778899999764 455433 3 211 13478999999986666 5555666653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0016 Score=58.17 Aligned_cols=239 Identities=8% Similarity=0.074 Sum_probs=130.0
Q ss_pred ccEEEEEECCC--CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---Ce-EEEEECCC
Q 019006 58 SAVYTMKFNPA--GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KT-LRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~-i~iwd~~~ 131 (347)
.....|+|+|+ +..|..+...+.|+.++..+. .+..+.........++++++|+++++...+ .. +...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC--EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 34668899984 344444444488998887432 223333344567899999999954444321 12 22233221
Q ss_pred Ccee-eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-c--CCCCceEEEEEcCCCCeEEEE-ecCC
Q 019006 132 GKQI-KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-F--PDKYQITAVSFSDASDKIYTG-GIDN 206 (347)
Q Consensus 132 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~-~~dg 206 (347)
+... ..+. .......++..+....++++-..++.|+.+|..++..... + ........++++|+++.|+.+ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 1110 1111 1122233455564556776666778899998875554222 1 112223469999999966655 4567
Q ss_pred cEEEEeCC--CCce--EEEecCC---------------CCceeEEEE---------CCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 207 DVKVWDLR--KGEV--SMTLQGH---------------QDMITGMSL---------SPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 207 ~i~iwd~~--~~~~--~~~~~~~---------------~~~i~~v~~---------~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
.|+.++.. ++.. ...+.+. -.....+++ .++++..++-...+.|+.++..
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-- 373 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-- 373 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--
Confidence 89998865 2221 1111111 123567898 7777777777777889888742
Q ss_pred CCcCceeEEEecccc--------c------cccceEEEEEC-CCCCEEEEeeCCCeEEEEeC
Q 019006 259 APQNRCVKILEGHQH--------N------FEKNLLKCGWS-PDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~--------~------~~~~~~~~~~s-~~g~~l~sgs~dg~i~vwd~ 305 (347)
+. +..+.+... . .-.....++++ ++|.++++=...+.|+.+++
T Consensus 374 ---G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 374 ---GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp ---SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ---CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 22 222222110 0 01235567777 45555555555566666654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0013 Score=56.23 Aligned_cols=268 Identities=8% Similarity=0.027 Sum_probs=138.8
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe----CcccceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK----GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETG 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 132 (347)
...+.+|.|.+.+..+++ +.+|.|... .++ .+...... .....+.+|.+.+ + .++.++.++.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~s-~Dg-G~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLMET-RDG-GQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEEE-SST-TSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEEe-CCC-CCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCC
Confidence 347899999887777774 556765332 322 11111111 1234678888876 3 4444566675544 22334
Q ss_pred ceeeeeec---cCcceeEeecCCCCCCEEEEEcCCCceE-EEeCCCCCceeec--CCCCceEEEEEcCCCCeEEEEecCC
Q 019006 133 KQIKKMAE---HNSFVNSCCPSRRGPPLVVSGSDDGTAK-LWDMRQRGAIQTF--PDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 133 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~~d~~i~-iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
+.-..... ....+..+.....+ .+++.+ .++.+. -.| .++..... +....+..+.+.+++..++.+. +|
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G 183 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RG 183 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CC
Confidence 33222211 12223344433322 344444 455442 222 22222222 2234678889998877666554 45
Q ss_pred cEEE-EeC--CCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 207 DVKV-WDL--RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 207 ~i~i-wd~--~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
.++. .|- .+-+.. . ......+..+.+.++++.++. +.+|.+.+.+... ......+..........+..+.
T Consensus 184 ~~~~S~d~gG~tW~~~-~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~----G~tW~~~~~~~~~~~~~~~~v~ 256 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPH-N-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN----SENWGELLSPLRRNSVGFLDLA 256 (327)
T ss_dssp SEEEEECTTCSSCEEE-E-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE----EEEECCCBCTTSSCCSCEEEEE
T ss_pred cEEEEeCCCCCceeEC-C-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCC----CCeeEeccCCcccCCcceEEEE
Confidence 5444 332 111221 1 223456888999998876544 5577777763110 1111111100000012467888
Q ss_pred ECCCCCEEEEeeCCCeEEEEeCCCceeeEEec---CCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP---GHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 284 ~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
+.+++..+++|. +|.| ++..+.++.-..+. .+...+..+.|.+++ .+..++.+|.|+-.
T Consensus 257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY 318 (327)
T ss_dssp ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence 998888777765 5666 34445555444443 234568889998655 46677788887654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.001 Score=54.48 Aligned_cols=204 Identities=11% Similarity=0.167 Sum_probs=122.7
Q ss_pred EEeCcccceeEEEEcCCCCEEEE-ecCCCeEEEEECCCCceeeeeeccC-cceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIIS-ASPDKTLRAWDVETGKQIKKMAEHN-SFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
.+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++.+.... .-...++....+ .++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEc
Confidence 34455567999999998776655 6678889999987 77777664321 223344444443 35566556678888877
Q ss_pred CCCCce---eec-------CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC---CCceEEEec-------CCCCceeEE
Q 019006 173 RQRGAI---QTF-------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR---KGEVSMTLQ-------GHQDMITGM 232 (347)
Q Consensus 173 ~~~~~~---~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~-------~~~~~i~~v 232 (347)
.....+ ... +.......++++|.++.|+++.......+|.+. .......+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 654421 111 223457899999999888887776555555443 111111111 122346889
Q ss_pred EECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--ccc---ccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 233 SLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--HNF---EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 233 ~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
+++|. +++++.....+.+..+|... +.+..+.-.. ... ....-.++|.++|.+.++ +.-+.+++|...
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g-----~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVG-----EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTC-----CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCC-----CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 99996 45566666777888898652 2223222111 010 124567889999985544 777788888654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.4e-05 Score=70.95 Aligned_cols=239 Identities=9% Similarity=0.034 Sum_probs=129.6
Q ss_pred CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCC----CceeeeeeccCcceeEeecCCC
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVET----GKQIKKMAEHNSFVNSCCPSRR 153 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~ 153 (347)
+.|+..++.+.. ...+......+..|+|++.+..|+.+ ...+.|+.+++.. ......+.........+++...
T Consensus 386 ~~I~~id~~~~~--~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 386 HEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TC-CEECTTSCC--EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred cceEEEeCCCCc--ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 466666664321 11122222356788999877666655 4567899998875 1111111111112233444444
Q ss_pred CCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEec--CCcEEEEeCCCCceEEEecCCCCcee
Q 019006 154 GPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGGI--DNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 154 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
+..++++-...+.|.++++........+.. ......++++|.+..|+.+.. .+.|..+++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 455666666678899998875543333332 234677889987776665543 36788887753322222222223457
Q ss_pred EEEECCCCCEE-EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce
Q 019006 231 GMSLSPDGSYL-LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309 (347)
Q Consensus 231 ~v~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~ 309 (347)
.|+|+|++..| ++-...+.|..+|+... . ...+....... .....+++..+ .++++....+.|..++..+++
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~--~---~~~~~~~~~~~-~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGG--N---RKTILEDEKRL-AHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSS--C---CEEECCCSSSC-SSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCC--c---eEEEEecCCcC-CCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 89999875544 45556678999997531 1 11111100000 11223334333 344455667899999988888
Q ss_pred eeEEecCCccCeeeEEE
Q 019006 310 ILYKLPGHTGSVNESVF 326 (347)
Q Consensus 310 ~~~~~~~h~~~v~~~~~ 326 (347)
.+..+.........+++
T Consensus 617 ~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 617 DVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEECCCTTCSSCCCCCB
T ss_pred ceEEeecCCCCCcEEEE
Confidence 77766543333444443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0025 Score=55.05 Aligned_cols=214 Identities=8% Similarity=-0.063 Sum_probs=125.7
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEE
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIY 200 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 200 (347)
..|+..++...... .+.........+.+.+....++++-...+.|..+++........... ......+++++.++.|+
T Consensus 53 ~~I~~i~~~g~~~~-~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly 131 (349)
T 3v64_C 53 IDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 131 (349)
T ss_dssp SCEEEECTTSCCEE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred cceEEEeCCCCeeE-EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence 44666666544332 22222233455666655666777777788898898876543333322 23457788887666555
Q ss_pred -EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc-CC-CcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 201 -TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG-MD-CKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 201 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
+-...+.|.++++........+.........++++|.+..|+... .. +.|...++... ....+... . -.
T Consensus 132 ~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-----~~~~~~~~--~-~~ 203 (349)
T 3v64_C 132 WTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-----GRRIIADT--H-LF 203 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----SCEESCCS--S-CS
T ss_pred EEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-----CcEEEEEC--C-CC
Confidence 445567899999875443333333334578999999666555443 34 67888887531 11111110 1 12
Q ss_pred ceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 278 NLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
....++++|++..|..+ +..+.|+.+|+........+...-.....+++ ..+.+..+-...+.|...
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEE
Confidence 46788999877777655 45678999998754433333333445567777 445555555555555543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0029 Score=55.52 Aligned_cols=215 Identities=7% Similarity=-0.072 Sum_probs=129.0
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeE
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKI 199 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 199 (347)
...|+..++....... +.........+.+.+....++++-...+.|..+++........+.. ......+++++.++.|
T Consensus 95 ~~~I~~i~~~~~~~~~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp BSCEEEECTTSCCCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred CccceeeccCCCcEEE-EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 3567777876554322 2222334455666666666777777788899999876543333222 2345678888766665
Q ss_pred EE-EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc-CC-CcEEEEeCCCCCCcCceeEEEeccccccc
Q 019006 200 YT-GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG-MD-CKLCIWDMRPYAPQNRCVKILEGHQHNFE 276 (347)
Q Consensus 200 ~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 276 (347)
+. -...+.|.++++........+.........++++|.+.+|+... .. +.|...++... ....+.... -
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~~~~~~~~~---~ 245 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-----GRRIIADTH---L 245 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----SCEEEECSS---C
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-----CcEEEEECC---C
Confidence 54 45567899988865443333333334578999998777665554 33 67888876531 111121111 1
Q ss_pred cceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 277 KNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 277 ~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
.....++++|++..|..+ +..+.|+.+|+........+.........+++ ..+.++.+-...+.|...
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 246788999877776655 45678999998754433333333445677777 455566666666666544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00037 Score=66.91 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=104.5
Q ss_pred ceeEEEEc-CCCCEEEEec-CC----CeEEEEECCCC-ceeee-eeccCcceeEeecCCCCCCEEEEEcCC----CceEE
Q 019006 102 AILDLHWT-TDGSQIISAS-PD----KTLRAWDVETG-KQIKK-MAEHNSFVNSCCPSRRGPPLVVSGSDD----GTAKL 169 (347)
Q Consensus 102 ~v~~~~~~-~~~~~l~s~~-~d----g~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d----~~i~i 169 (347)
.+....|| |||++|+-+. .+ .+|+++|+.++ +.+.. +.. ......+++++..++++...+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 9999887443 22 35999999988 63221 111 123456677765555554322 25777
Q ss_pred EeCCCCCc--eeec--CCCCceEEEEEcCCCCeEEEEec---CCcEEEEeCCCCc-eE--EEe-cCCCCceeEEEECCCC
Q 019006 170 WDMRQRGA--IQTF--PDKYQITAVSFSDASDKIYTGGI---DNDVKVWDLRKGE-VS--MTL-QGHQDMITGMSLSPDG 238 (347)
Q Consensus 170 wd~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~-~~~~~~i~~v~~~~~~ 238 (347)
+++.++.. ...+ +.......+.|+|++++|+..+. ...|+++|+.++. .. ..+ ........++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 78866532 1222 22334567899999998876553 3468889987652 12 223 2233445556554444
Q ss_pred CEEEEEcCC--C--cEEEEeCCCCCCcCceeE-EEeccccccccceEEEEECCCCCEEEEeeCCCe--EEEEeC
Q 019006 239 SYLLTNGMD--C--KLCIWDMRPYAPQNRCVK-ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM--VYIWDT 305 (347)
Q Consensus 239 ~~l~t~~~d--~--~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~--i~vwd~ 305 (347)
.+++....+ + .|..+|+... ..... .+. +. ....+..+.+. .+.++++...++. |+++|+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~---~~~~~~li~-~~--~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQP---SDWSHVLVD-HS--EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTST---TCCCCEEEC-CC--SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCc---ccceeeEEC-CC--CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 444444443 2 5666665421 11111 121 11 11233444443 2344556667775 556665
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00018 Score=67.98 Aligned_cols=229 Identities=13% Similarity=0.053 Sum_probs=120.2
Q ss_pred EEEEcC-CCCEEEEecCCC-----------eEEEEECCCCcee--eeeec-cCcceeEeecCCCCCCEEEEEc-CCCceE
Q 019006 105 DLHWTT-DGSQIISASPDK-----------TLRAWDVETGKQI--KKMAE-HNSFVNSCCPSRRGPPLVVSGS-DDGTAK 168 (347)
Q Consensus 105 ~~~~~~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~s~~-~d~~i~ 168 (347)
++++.+ +++.++.|+.+. .+.+||..+++.. ..+.. +.......+.... ..+++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN-GQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT-SCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC-CCEEEeCCCCCCceE
Confidence 456666 777788876543 5888998876532 22211 2222222333333 45777777 456899
Q ss_pred EEeCCCCCceee--cCCCCceEEEEEcCCCCeEEEEe-cC-----CcEEEEeCCCCceEEEecCC-----CCceeEEEEC
Q 019006 169 LWDMRQRGAIQT--FPDKYQITAVSFSDASDKIYTGG-ID-----NDVKVWDLRKGEVSMTLQGH-----QDMITGMSLS 235 (347)
Q Consensus 169 iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~~~-----~~~i~~v~~~ 235 (347)
+||..+..-... ++..-.-.+++..++++.++.|+ .+ ..+.+||..+.+-.. +... ...-....+.
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceee
Confidence 999876543222 22221223445556788888888 34 469999998765322 1100 0000001122
Q ss_pred CCCCEEEEEcCCC---------cEEEEeCCCCCCcCceeEEEecccc-----ccccceEEEEEC-CCCCEEEEeeCCC--
Q 019006 236 PDGSYLLTNGMDC---------KLCIWDMRPYAPQNRCVKILEGHQH-----NFEKNLLKCGWS-PDGSKVTAGSSDR-- 298 (347)
Q Consensus 236 ~~~~~l~t~~~d~---------~i~~wd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s-~~g~~l~sgs~dg-- 298 (347)
.++..++.++.++ .+..||.... ........... .....-..+.|. .++++++.|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~----~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS----GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTT----CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCc----ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 3444445554443 4667776532 11121111110 000112333443 3778888888543
Q ss_pred ---------eEEEEeCCCceeeEEe--cCCccCe-eeEEEcCCCCEEEEecCC
Q 019006 299 ---------MVYIWDTTSRRILYKL--PGHTGSV-NESVFHATEPVIGSCSSD 339 (347)
Q Consensus 299 ---------~i~vwd~~~~~~~~~~--~~h~~~v-~~~~~~~~~~~l~s~s~D 339 (347)
.|.+||..+..-.... .-+.... ..++..|++++++.+|.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888888776543322 1122222 345677899999999865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0013 Score=56.06 Aligned_cols=197 Identities=14% Similarity=0.293 Sum_probs=117.9
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCC----CCCC--EEEE-EcC--CCceEEEeCC-CCCceeec
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSR----RGPP--LVVS-GSD--DGTAKLWDMR-QRGAIQTF 181 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~~~s-~~~--d~~i~iwd~~-~~~~~~~~ 181 (347)
...++.....+-+.+||+ +++.+..+.. ..++.+..-+ .+.. ++++ .-. +++|.+|++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345666667788999999 7888777653 1222211111 1111 2333 333 5889999773 22234433
Q ss_pred -----C--CC-CceEEEEE--cCCCC--eEEEEecCCcEEEEeCC---C----CceEEEecCCCCceeEEEECCCCCEEE
Q 019006 182 -----P--DK-YQITAVSF--SDASD--KIYTGGIDNDVKVWDLR---K----GEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 182 -----~--~~-~~v~~~~~--~~~~~--~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
+ .. ..+..+++ ++... ++++...+|.+..|++. . .+.+.++.. ...+..+...+...+|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 2 22 45666777 66544 57888889999999883 2 344555553 34688889999889999
Q ss_pred EEcCCCcEEEEeCCCCCC-cCceeEEEeccccccccceEEEEE--CCCCC-EEEEee-CCCeEEEEeCC-CceeeEEe
Q 019006 243 TNGMDCKLCIWDMRPYAP-QNRCVKILEGHQHNFEKNLLKCGW--SPDGS-KVTAGS-SDRMVYIWDTT-SRRILYKL 314 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~-~l~sgs-~dg~i~vwd~~-~~~~~~~~ 314 (347)
.+-++..|..+|.++... ....+..... ......+-.+++ .++++ +|++++ .++...+||.. +.+.+..+
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 999987776667554321 1223333221 112223444544 66666 666666 56799999996 66666655
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0025 Score=57.34 Aligned_cols=240 Identities=11% Similarity=0.023 Sum_probs=129.0
Q ss_pred eeEEEEcC-CCCEEEEec-CCCeEEEEECCCCceeeeeeccC---cceeEeec-------CCCCCCEEEEEcCCCc----
Q 019006 103 ILDLHWTT-DGSQIISAS-PDKTLRAWDVETGKQIKKMAEHN---SFVNSCCP-------SRRGPPLVVSGSDDGT---- 166 (347)
Q Consensus 103 v~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~~~~s~~~d~~---- 166 (347)
...|+|+| +...|+.+. ..+.|++.|+.++.......... .....+++ .+.+..++++-..++.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 45789998 355555544 44678888887765433222211 13455666 6666545555544422
Q ss_pred --eEEEeCCC-CCce-----eecCCCCceEEEEEcCCCCeEE-EEecCCcEEEEeCC-------CCce------------
Q 019006 167 --AKLWDMRQ-RGAI-----QTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVWDLR-------KGEV------------ 218 (347)
Q Consensus 167 --i~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~-------~~~~------------ 218 (347)
+.+++... +... ..+..-.....++++|++..|+ +-..++.|+.+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 55665333 1211 1222112345678899666655 45567789999987 4443
Q ss_pred --EEEecCCCCceeEEEECCCCCEEE-EEcCCCcEEEEeCCCCCCcCceeEEEecc---c---------cccccceE-EE
Q 019006 219 --SMTLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAPQNRCVKILEGH---Q---------HNFEKNLL-KC 282 (347)
Q Consensus 219 --~~~~~~~~~~i~~v~~~~~~~~l~-t~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~---------~~~~~~~~-~~ 282 (347)
..... .......|+|+|++++|+ +-.....|+.+|.............+.+. . ..+. ... .+
T Consensus 301 ~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~-~P~~gv 378 (496)
T 3kya_A 301 KQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN-NPCQGV 378 (496)
T ss_dssp EEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS-SEEEEE
T ss_pred ceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC-CCeEEE
Confidence 11222 223457899999999544 44566788886654211000000111111 0 0111 123 33
Q ss_pred EEC-------CCCCEEEEeeCCCeEEEEeCCCceeeEEecCC---------------c---------cCeeeEEEcCC-C
Q 019006 283 GWS-------PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGH---------------T---------GSVNESVFHAT-E 330 (347)
Q Consensus 283 ~~s-------~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h---------------~---------~~v~~~~~~~~-~ 330 (347)
+.. ++|.+.++=+....|+.++. ++. +.++-|. . .....|++.++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 343 45666677677888999983 453 3333222 0 13567888886 6
Q ss_pred CEEEEecCCCcEEeec
Q 019006 331 PVIGSCSSDKQIYLGE 346 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~ 346 (347)
.++++=..++.|+..+
T Consensus 457 ~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 457 MFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCEEEEEE
Confidence 6666666666676554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0083 Score=57.58 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=132.8
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCC----ceeeeeeccCcceeEeecCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETG----KQIKKMAEHNSFVNSCCPSR 152 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~ 152 (347)
...|+..++.+. ....+......+..|+|++....| ++-...+.|+.+++... .....+.........++...
T Consensus 403 ~~~Ir~i~l~~~--~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 403 RHEVRKMTLDRS--EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp BSSEEEECTTSC--CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccceeEeeccCC--cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345777666532 222333344567889999855555 45556688988888652 11112221223334556655
Q ss_pred CCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec--CCcEEEEeCCCCceEEEecCCCCce
Q 019006 153 RGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI--DNDVKVWDLRKGEVSMTLQGHQDMI 229 (347)
Q Consensus 153 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i 229 (347)
.+..++++-...++|.+.++........+. .......++++|....|+.... .+.|...++........+...-...
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 566788888888999999987554333332 2345789999998777776553 3679999886544433333333467
Q ss_pred eEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCC
Q 019006 230 TGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTS 307 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~ 307 (347)
+.|++++.+..|+.+ ...+.|...|+... .+ ...+.... .+ .....+++. +.+|+ +-...+.|...|..+
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~---~~-~~v~~~~~-~l-~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGG---NR-KTILEDEK-RL-AHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC---SC-EEEEECTT-TT-SSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCC---ce-EEEecCCC-cc-CCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 899999876666655 44568888887531 11 11122110 11 123455543 33444 445667888888877
Q ss_pred ceeeEEec
Q 019006 308 RRILYKLP 315 (347)
Q Consensus 308 ~~~~~~~~ 315 (347)
++.+..+.
T Consensus 633 G~~~~~l~ 640 (791)
T 3m0c_C 633 GSDVNLLA 640 (791)
T ss_dssp CCCCEEEE
T ss_pred CcceEEee
Confidence 76655554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0041 Score=52.90 Aligned_cols=214 Identities=7% Similarity=-0.042 Sum_probs=125.8
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC----CCceeecCC-CCceEEEEEcCCC
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ----RGAIQTFPD-KYQITAVSFSDAS 196 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~~~~-~~~v~~~~~~~~~ 196 (347)
..|+..|+...+....+. .......+.+.+.+..++++-...+.|..+++.. ......+.. ......+++++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 457788877655433222 2233445666665566777777788999998875 222222222 2356788888766
Q ss_pred CeEEE-EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC--CcEEEEeCCCCCCcCceeEEEecccc
Q 019006 197 DKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD--CKLCIWDMRPYAPQNRCVKILEGHQH 273 (347)
Q Consensus 197 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~ 273 (347)
+.++. -...+.|.++|+........+.........++++|.+.+|+.+... +.|...++.. .....+...
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-----~~~~~~~~~-- 161 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-----VDIYSLVTE-- 161 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----CCEEEEECS--
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-----CCeEEEEEC--
Confidence 66654 4567889999987544333333233457899999977766555432 6788887642 112222111
Q ss_pred ccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEec--CCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 274 NFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLP--GHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 274 ~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
. -.....++++|++..|..+. ..+.|..+|+.......... ..-.....+++. .+.++.+-...+.|...
T Consensus 162 ~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 162 N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred C-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1 13467889999887776554 56789999987533222222 122345677774 45666666666666654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0023 Score=54.55 Aligned_cols=183 Identities=9% Similarity=0.238 Sum_probs=117.8
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCC----CCe--EEEEe--c--CCcEEEEeCC--CCceEEEec
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA----SDK--IYTGG--I--DNDVKVWDLR--KGEVSMTLQ 223 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~--~--dg~i~iwd~~--~~~~~~~~~ 223 (347)
.++++....+-+.+||+ .++.++.++. ..++.+..-|. ++. ++.++ . +++|.+|++. +++ ...+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 45666667788999999 7888888765 55666665552 221 33333 3 5789999763 333 33331
Q ss_pred C------CC-CceeEEEE--CCC-CC-EEEEEcCCCcEEEEeCCCCC---CcCceeEEEeccccccccceEEEEECCCCC
Q 019006 224 G------HQ-DMITGMSL--SPD-GS-YLLTNGMDCKLCIWDMRPYA---PQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 224 ~------~~-~~i~~v~~--~~~-~~-~l~t~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
. .. ..+..+++ +|. +. ++++...+|.+..|++.... ...+.++.+.. ...+-.|...+...
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvDd~~g 192 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAADDEYG 192 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEETTTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEcCCCC
Confidence 1 11 45677888 774 43 78888999999999985321 22334444432 23566788889999
Q ss_pred EEEEeeCCCeEEEEeCC-----CceeeEEec-CCc-cCeeeEEE--cCCCC--EEEEecCCCcEEeec
Q 019006 290 KVTAGSSDRMVYIWDTT-----SRRILYKLP-GHT-GSVNESVF--HATEP--VIGSCSSDKQIYLGE 346 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~-----~~~~~~~~~-~h~-~~v~~~~~--~~~~~--~l~s~s~D~~i~i~~ 346 (347)
.|+.+-.+.-|..++.+ +++++..+. +|- ..+-.+++ .++++ +++|+-.+.+..++|
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 99999999888888865 355665553 332 36778887 44444 555665677777765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00041 Score=66.57 Aligned_cols=195 Identities=11% Similarity=0.032 Sum_probs=106.3
Q ss_pred eeEeecC-CCCCCEEEEEcCCC----ceEEEeCCCC-CceeecCCCCceEEEEEcCCCCeEEEEecC-----CcEEEEeC
Q 019006 145 VNSCCPS-RRGPPLVVSGSDDG----TAKLWDMRQR-GAIQTFPDKYQITAVSFSDASDKIYTGGID-----NDVKVWDL 213 (347)
Q Consensus 145 v~~~~~~-~~~~~~~~s~~~d~----~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 213 (347)
+....++ +++..++++.+.+| +|+++|+.++ ..+... -......+.|+|+++.|+....+ ..|+.+++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4456778 77665555544443 4999999887 532110 01113467899999888766654 25888888
Q ss_pred CCCce--EEEec-CCCCceeEEEECCCCCEEEEEcC---CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 214 RKGEV--SMTLQ-GHQDMITGMSLSPDGSYLLTNGM---DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 214 ~~~~~--~~~~~-~~~~~i~~v~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
.++.. ...+. ........+.|+|||++|+..+. ...|.++|+........ +..+.... .....+..|+.+
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~-~~~l~~~~---~~~~~s~~~~~g 330 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT-LEIVRPRE---KGVRYDVQMHGT 330 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC-EEESSCCC---TTCCEEEEEETT
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce-eEEeecCC---CCceEEEeeeeC
Confidence 76542 22222 22345667899999998886552 34688888864311110 01121111 223444444443
Q ss_pred CCEEEEeeCC----CeEEEEeCCCceeeEE-ecCCcc--CeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 288 GSKVTAGSSD----RMVYIWDTTSRRILYK-LPGHTG--SVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 288 g~~l~sgs~d----g~i~vwd~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
+.+++....+ ..|+.+|+.+...... +-.|.. .+..+.+. .+.++++...|+...|+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 4444444333 3677888765211122 223333 34556665 34566677777764443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0075 Score=56.35 Aligned_cols=229 Identities=9% Similarity=0.053 Sum_probs=126.8
Q ss_pred CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeee-eccCcceeEeecCCCCC
Q 019006 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQIKKM-AEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 155 (347)
...|+..++.+.......+...-.....|+|++.+..|+-+ ...+.|..++++.......+ .........++....+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 34566666654321122222233456789999866666544 45678888888654321222 22223455666666566
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEec--CCcEEEEeCCCCceEEEecCCCCceeEE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGI--DNDVKVWDLRKGEVSMTLQGHQDMITGM 232 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~v 232 (347)
.++++-...+.|.+.++......... ..-.....++++|..+.|+.... .+.|...++............-...+.|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 77888788899999998755432222 23345678999998777766553 4677777775433322222233456889
Q ss_pred EECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 233 SLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 233 ~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
++++++..|..+ ...+.|...|+.... ... ...+. . .....+++..+ ....+-...+.|...|..+++..
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~--~~~--~~~~~-~---~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTN--RQA--VVKGS-L---PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCE--EC---------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCc--cEE--EEeCC-C---CCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 999876665554 456788888875311 111 11100 0 11234455544 34445556778999998887655
Q ss_pred EEec
Q 019006 312 YKLP 315 (347)
Q Consensus 312 ~~~~ 315 (347)
..+.
T Consensus 248 ~~i~ 251 (619)
T 3s94_A 248 REIH 251 (619)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0088 Score=53.84 Aligned_cols=245 Identities=11% Similarity=0.062 Sum_probs=136.7
Q ss_pred cEEEEEECCC-C-CeEEEeeCCCcEEEEeccCCCeeeEEEeC---cccceeEEEE-------cCCCCEEEEecCCC----
Q 019006 59 AVYTMKFNPA-G-TVIASGSHDRDIFLWHVHGDCKNFMVLKG---HKNAILDLHW-------TTDGSQIISASPDK---- 122 (347)
Q Consensus 59 ~V~~v~~~~~-~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~~l~s~~~dg---- 122 (347)
....|+|+|. . .++++-...+.|++.|..+.. ....... .......++| ++++++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 5678999983 4 455555545667778775432 2112222 1235789999 99999666665543
Q ss_pred ---eEEEEECCC-Ccee-----eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCC-------CCCc---------
Q 019006 123 ---TLRAWDVET-GKQI-----KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR-------QRGA--------- 177 (347)
Q Consensus 123 ---~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~-------~~~~--------- 177 (347)
.|.+.+... +... ..+.. ......++..+.+..++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 255665333 1211 11211 11223455667667788888888999999987 4432
Q ss_pred -----eeecCCCCceEEEEEcCCCCeEEEE-ecCCcEEEEeCC--CCce--EEEecCC---C------------Ccee-E
Q 019006 178 -----IQTFPDKYQITAVSFSDASDKIYTG-GIDNDVKVWDLR--KGEV--SMTLQGH---Q------------DMIT-G 231 (347)
Q Consensus 178 -----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~---~------------~~i~-~ 231 (347)
+...+.......++|+|+++.|+.+ +..+.|+.++.. .+.. ...+.+. . .... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 1122333456789999999965555 466789886643 3221 0112111 0 1123 3
Q ss_pred EEEC-------CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc--------------c------cccceEEEEE
Q 019006 232 MSLS-------PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH--------------N------FEKNLLKCGW 284 (347)
Q Consensus 232 v~~~-------~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~ 284 (347)
++.. ++++++++-.....|+.++.. +. +..+.+... . .-.....+++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-----G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-----GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-----CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeCC-----CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 4443 456666666677788888732 22 233322210 0 0123567778
Q ss_pred CCC-CCEEEEeeCCCeEEEEeCCCceee
Q 019006 285 SPD-GSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 285 s~~-g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+++ |.+.++=+....|+.++++.....
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 886 665566666677888877654443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0075 Score=51.31 Aligned_cols=216 Identities=11% Similarity=0.009 Sum_probs=122.6
Q ss_pred CCeEEEEECCCCce-eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-ec-CCCCceEEEEEcCCCC
Q 019006 121 DKTLRAWDVETGKQ-IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-TF-PDKYQITAVSFSDASD 197 (347)
Q Consensus 121 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~ 197 (347)
...|+..++..... .............+.+......++++-...+.|..+++....... .. ..-.....+++++.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 45677777765431 111111112233445555445677777777888888876553211 11 1223456788887666
Q ss_pred eEE-EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 198 KIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 198 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
.|+ +-...+.|.++++........+.........+++.|.+.+|+.+. ..+.|...++... ....+-...
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~~~~~~~~~-- 164 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-----SRFIIINSE-- 164 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-----SCEEEECSS--
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-----CeEEEEECC--
Confidence 555 445667899999865433333333344578999998766666554 3567888876521 111121111
Q ss_pred cccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 275 FEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
-.....++++|++..|..+ +..+.|+.+|+........+.+.......+++. .+.++.+-...+.|...
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILAC 234 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEE
Confidence 1245788999987777655 456789999987543332233333455667774 34455555555666544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.018 Score=53.81 Aligned_cols=229 Identities=10% Similarity=0.008 Sum_probs=134.8
Q ss_pred CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCC
Q 019006 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGP 155 (347)
Q Consensus 77 ~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (347)
....|+..++.+...........-.....|+|++.+..|+ +-..++.|+.++++.......+.........++....+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 3456777777543221111111234578999998766665 445678899998875433222222212334455555556
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeec-CCCCceEEEEEcCCCCeEEEEec--CCcEEEEeCCCCceEEEecCCCCceeEE
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTF-PDKYQITAVSFSDASDKIYTGGI--DNDVKVWDLRKGEVSMTLQGHQDMITGM 232 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~v 232 (347)
.++++-...+.|.+.++......... ..-.....++++|....|+.... .+.|...++.......... .-.....|
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceE
Confidence 67777777888999998654432222 23346789999997777776553 5678888876544332232 33457899
Q ss_pred EECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee
Q 019006 233 SLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 233 ~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+++++++.|..+ ...+.|...|+.... + +.+... . .....+++.. +....+-...+.|...|..+++..
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~---~--~v~~~~---l-~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLN---R--EVIADD---L-PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS---C--EEEEEC---C-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCc---e--EEeecc---C-CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 999976666555 456789999986421 1 122211 1 1234555544 344445556788999998777655
Q ss_pred EEecC
Q 019006 312 YKLPG 316 (347)
Q Consensus 312 ~~~~~ 316 (347)
..+..
T Consensus 242 ~~l~~ 246 (628)
T 4a0p_A 242 TIIQG 246 (628)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 44443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.82 E-value=0.015 Score=51.27 Aligned_cols=215 Identities=8% Similarity=-0.043 Sum_probs=127.5
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC----CceeecC-CCCceEEEEEcCC
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR----GAIQTFP-DKYQITAVSFSDA 195 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~ 195 (347)
...|+..++........ ......+..+.+.+....++++-...+.|..+++... ....... .......+++++.
T Consensus 91 ~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp TTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred cceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 46778878765543322 2233445566666666667777777788888887652 1222222 2345778899886
Q ss_pred CCeEEE-EecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 196 SDKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 196 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.|+. -...+.|.+.++........+.........|++.|.+.+|+.... .+.|...++... ....+...
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-----~~~~~~~~- 243 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-----DIYSLVTE- 243 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-----SCEEEECS-
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-----ccEEEEEC-
Confidence 565554 456778999998765444444333445789999997666665542 367888887531 11112111
Q ss_pred cccccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecC--CccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 273 HNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPG--HTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
. -.....+++++++..|+.+. ..+.|+.+|+........+.. .-.....+++ ..+.++.+-...+.|...
T Consensus 244 -~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 244 -N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSA 316 (400)
T ss_dssp -S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEE
T ss_pred -C-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEE
Confidence 1 13467889999888877664 567899999875443322222 2234456666 344566566666666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0035 Score=53.04 Aligned_cols=158 Identities=9% Similarity=0.121 Sum_probs=101.7
Q ss_pred EEEEEcCCCCeEEEEe-cCCcEEEEeCCCCceEE-EecC----CC--CceeEEEE---CCCCCEEEEEc-----------
Q 019006 188 TAVSFSDASDKIYTGG-IDNDVKVWDLRKGEVSM-TLQG----HQ--DMITGMSL---SPDGSYLLTNG----------- 245 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~----~~--~~i~~v~~---~~~~~~l~t~~----------- 245 (347)
.+..|++....|+.++ ..++|..||...+.... .+.+ .. ..+..|.| .|+++.+++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4578887777777766 78999999987554322 2222 11 13578999 68877777543
Q ss_pred --CCCcEEEEeCC---CCCCcCceeEEEeccccc-------cccceEEEEECCCCCEEEEeeCC-CeEEEEeCCCceeeE
Q 019006 246 --MDCKLCIWDMR---PYAPQNRCVKILEGHQHN-------FEKNLLKCGWSPDGSKVTAGSSD-RMVYIWDTTSRRILY 312 (347)
Q Consensus 246 --~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~l~sgs~d-g~i~vwd~~~~~~~~ 312 (347)
.+..+..+|+. +.+.. ...-+...... ....+..++..++|+.-++++.. +.|..++........
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~--~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPV--WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCS--EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEE--EEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 26779999987 33221 11111111100 11246788899999999999888 899998877553321
Q ss_pred Ee-c----CCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 313 KL-P----GHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 313 ~~-~----~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.. . ......+.++++|++..|+....+|.+.-+|+
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 11 1 11223679999999988887777998887774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.022 Score=54.62 Aligned_cols=199 Identities=12% Similarity=-0.015 Sum_probs=115.2
Q ss_pred cccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCC---eeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCC
Q 019006 57 QSAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVET 131 (347)
Q Consensus 57 ~~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~ 131 (347)
...+.+|+|.+.+. ++++-...+.|+.+++.+.. .....+.........|++.+.+..|+ +-...+.|.+.+++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 44567888988544 45555556778888876421 11223332334567888887665554 556678999999875
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCC-CceEEEeCCCCCceeecCC-CCceEEEEEcCCCCeEEEEe-cCCcE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD-GTAKLWDMRQRGAIQTFPD-KYQITAVSFSDASDKIYTGG-IDNDV 208 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i 208 (347)
......+.........++..+..+.++++-... +.|...++........+.. -.....|++++..+.|+.+. ..+.|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I 582 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence 443222222233355666666655566664333 6788888765443333332 24688999998877777664 45679
Q ss_pred EEEeCCCCceEEEecCC--CCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 209 KVWDLRKGEVSMTLQGH--QDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
..+++........+... .....+|++.. ++.+++-...+.|...|..
T Consensus 583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 99998654433333221 12344566532 3344444455677777754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0093 Score=51.35 Aligned_cols=234 Identities=13% Similarity=0.217 Sum_probs=120.6
Q ss_pred ceeEEEEcCCCCEEEEec------------CCCeEEEEECCCC-ceeeeeeccC-------cceeEeecCC--CCC-CEE
Q 019006 102 AILDLHWTTDGSQIISAS------------PDKTLRAWDVETG-KQIKKMAEHN-------SFVNSCCPSR--RGP-PLV 158 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~-~~~~~~~~~~-------~~v~~~~~~~--~~~-~~~ 158 (347)
...++...++|..+++++ .+|.|.++|.++. .....+.... -....+.... ++. .++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345666677665444442 6899999998742 1122221111 1111222212 222 244
Q ss_pred EEEcC--CCceEEEeCCCCCc----eeecCC--CCceEEEEEcCCCCeEEEEe-----------------cCCcEEEEeC
Q 019006 159 VSGSD--DGTAKLWDMRQRGA----IQTFPD--KYQITAVSFSDASDKIYTGG-----------------IDNDVKVWDL 213 (347)
Q Consensus 159 ~s~~~--d~~i~iwd~~~~~~----~~~~~~--~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~ 213 (347)
+.-.. +.++.+|++..... +..+.+ -...+.+.+.+++.+.++.. ..|.|+-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 46777777654322 222332 23578899999887666543 1245655654
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCEE
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKV 291 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l 291 (347)
++...... .-..-+.++|+|+++.|+.+ +..+.|..||+..... ....+.+. .....-.++..+ +|.+.
T Consensus 211 --~~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~-l~~~~~~~-----~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 211 --NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLS-----FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp --TCCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEE-----CSSEEEEEEECTTTCCEE
T ss_pred --CeEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc-EecCEEEe-----CCCCCceEEEeCCCCcEE
Confidence 33222222 22356899999999877665 4567999999863211 11112221 123455677888 59888
Q ss_pred EEeeCC-CeEEEEeCC--CceeeEEecC---CccCeeeEEEcCCCCEEEEec----CCCcEEee
Q 019006 292 TAGSSD-RMVYIWDTT--SRRILYKLPG---HTGSVNESVFHATEPVIGSCS----SDKQIYLG 345 (347)
Q Consensus 292 ~sgs~d-g~i~vwd~~--~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s----~D~~i~i~ 345 (347)
+++..+ +.|..|+.. .+..+.++.. -...+.. .|..+++.+..++ .++.++|.
T Consensus 282 va~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~-v~~ddG~~l~~~T~a~~~~g~L~iG 344 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTV-VYAENGTVLQGSTVAAVYKGKLLIG 344 (355)
T ss_dssp EEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEE-EEEECSSSCCSEEEEEEETTEEEEE
T ss_pred EEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEE-EEEcCCCEEEeeEEEEEECCEEEEE
Confidence 766544 455556654 2445555542 1223333 3555665433222 35555553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.028 Score=48.48 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=113.3
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCC---CCEEEEecC-C-----CeE
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTD---GSQIISASP-D-----KTL 124 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~l~s~~~-d-----g~i 124 (347)
-.....|+|.|+|+++++ ..+|.|++++ .+....+..+. ........|+|+|+ +..|+.+.. + ..|
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 446789999999986654 5669999988 43322222111 12346789999998 555554433 2 567
Q ss_pred EEEECCCCce-----e-eeeec---cCcceeEeecCCCCCCEEEEEcCC-------------CceEEEeCCCCC------
Q 019006 125 RAWDVETGKQ-----I-KKMAE---HNSFVNSCCPSRRGPPLVVSGSDD-------------GTAKLWDMRQRG------ 176 (347)
Q Consensus 125 ~iwd~~~~~~-----~-~~~~~---~~~~v~~~~~~~~~~~~~~s~~~d-------------~~i~iwd~~~~~------ 176 (347)
..++...+.. + ..+.. .......+.+.+++ .+.++-+.. +.|.-++....-
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7777764321 1 11220 01122356666665 455543221 344444443200
Q ss_pred ------ceeecC-CCCceEEEEEcCCCCeEEEEec-CCc--------EEEEeCCCCc------------------eEEEe
Q 019006 177 ------AIQTFP-DKYQITAVSFSDASDKIYTGGI-DND--------VKVWDLRKGE------------------VSMTL 222 (347)
Q Consensus 177 ------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~--------i~iwd~~~~~------------------~~~~~ 222 (347)
....+. .......++|+|+...|+++.. .+. |.+.. .+. ....+
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000000 0112566789984444544332 222 33322 221 12222
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce--eEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC--VKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
..| .....++| .+|..+++.-..+.|...++......... ...+- .. ...+..+++.|||.+.++..
T Consensus 265 ~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ES-SCCEEEEEECTTSCEEEEEC
T ss_pred CCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---cc-CCCeeEEEECCCCcEEEEEe
Confidence 222 23567777 45666666666677777776532110000 11111 01 23578888999997766654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.048 Score=50.93 Aligned_cols=280 Identities=7% Similarity=-0.002 Sum_probs=145.5
Q ss_pred ccEEEEEECCCCC-eEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC--CCeEEEEECCCCce
Q 019006 58 SAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP--DKTLRAWDVETGKQ 134 (347)
Q Consensus 58 ~~V~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~ 134 (347)
.....|++.+.+. +.++-...+.|.+.++.+..... .....-.....|++.|.+.+|+-... .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~-l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE-EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 5688999998655 55555567889999987654322 22233345678899987666655443 45666666654322
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
.......-.....++..+....++++-...+.|...|+.......... .......+++..+ ..+++-...+.|...|.
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 211212223344566666666677777777888888876433222111 1112345566544 33334445678888888
Q ss_pred CCCceEEEecCCCCceeE-------------------------EEE-----------CCCCC---------------EEE
Q 019006 214 RKGEVSMTLQGHQDMITG-------------------------MSL-----------SPDGS---------------YLL 242 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~-------------------------v~~-----------~~~~~---------------~l~ 242 (347)
.+++....+........+ +++ +|.|- +|+
T Consensus 242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll 321 (619)
T 3s94_A 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321 (619)
T ss_dssp SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence 766533322111101111 111 11110 122
Q ss_pred EEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEecCCccCe
Q 019006 243 TNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLPGHTGSV 321 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~~h~~~v 321 (347)
.+ ..+.|+..++...... .. .+.. .. -..+..++|.+.+..|+.+ ...+.|+.++.........+...-...
T Consensus 322 ~~-~~~~i~~i~l~~~~~~-~~--~~~~--~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 322 LA-RRTDLRRISLDTPDFT-DI--VLQL--ED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp EE-ESSCEEEEESSSTTCC-CE--ECCC--SC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EE-cccceEEEecCCCccc-ee--EEec--cc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 11 1223444444321110 00 0000 00 1246778898866666554 457789999887644333333333567
Q ss_pred eeEEEcCC-CCEEEEecCCCcEEeec
Q 019006 322 NESVFHAT-EPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 322 ~~~~~~~~-~~~l~s~s~D~~i~i~~ 346 (347)
..+++... +.+..+-+..+.|.+.+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEEEe
Confidence 88999864 44555655566666554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.032 Score=48.87 Aligned_cols=254 Identities=12% Similarity=0.130 Sum_probs=155.1
Q ss_pred CCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 78 DRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
+..|.+-|+.......+ ...+ -+.-.+|..+.|+.-. ..++.|+|+++...++.+......+ -+.|....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vv-fWkWis~~-- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT-FWKWISLN-- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCC-EEEEEETT--
T ss_pred CCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCce-EEEecCCC--
Confidence 34677888864333221 1111 2334677777666554 7899999999988887776555443 44444332
Q ss_pred EEEEEcCCCceEEEeCCC-CCceeecCC-----CCceEEEEEcCCCCeEEEEe-------cCCcEEEEeCCCCceEEEec
Q 019006 157 LVVSGSDDGTAKLWDMRQ-RGAIQTFPD-----KYQITAVSFSDASDKIYTGG-------IDNDVKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~ 223 (347)
.++-. .+..|.-|++.. ..+.+.+.. ..+|.....+++.++++..+ -.|.+.+|..+.. ....+.
T Consensus 118 ~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 195 (494)
T 1bpo_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (494)
T ss_dssp EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe
Confidence 33333 346799999864 234443322 35788888899999876433 2356888987644 456677
Q ss_pred CCCCceeEEEECCCC--CEEEE-EcC---CCcEEEEeCCCC-CCc----CceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 224 GHQDMITGMSLSPDG--SYLLT-NGM---DCKLCIWDMRPY-APQ----NRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 224 ~~~~~i~~v~~~~~~--~~l~t-~~~---d~~i~~wd~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+|...-..+.+..+. ..|++ +.. .+.+.+-++... ... .+.+...-.. ....+-..++..++....+.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp-e~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT-TSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc-ccccCceeEEEecccCCEEE
Confidence 776544333332111 12222 222 368999988542 111 1111111111 11234456778899999999
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
.-+.-|.|++||+.++.+++.-+-....|...+.+....-+......|.|.
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 999999999999999999987666666777667766666666666777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0041 Score=59.05 Aligned_cols=216 Identities=7% Similarity=-0.039 Sum_probs=117.7
Q ss_pred CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC----CCceeecCC-CCceEEEEEcCC
Q 019006 121 DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ----RGAIQTFPD-KYQITAVSFSDA 195 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~~~~-~~~v~~~~~~~~ 195 (347)
.+.|+..++........+.. ...+..+.+.+....++++-...+.|+.+++.. ......+.. ......+++++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777766543322221 222334455554555666666678899998875 222222221 123556788866
Q ss_pred CCeEEEE-ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC--CCcEEEEeCCCCCCcCceeEEEeccc
Q 019006 196 SDKIYTG-GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM--DCKLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 196 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
++.|+.+ ...+.|.++++........+.........|+++|.+.+|+.+.. .+.|..+++.... ...+....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-----~~~l~~~~ 538 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTEN 538 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-----CCEESCSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-----eeEEEeCC
Confidence 5555544 45678999998755433333322344678999997665555443 2677777764211 11111111
Q ss_pred cccccceEEEEECCCCCEEEE-eeCCCeEEEEeCCCceeeEEec--CCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 273 HNFEKNLLKCGWSPDGSKVTA-GSSDRMVYIWDTTSRRILYKLP--GHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 273 ~~~~~~~~~~~~s~~g~~l~s-gs~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
-.....++|+|++..|+. -+..+.|+++++........+. +.-.....+++..+ .++.+....+.|...+
T Consensus 539 ---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 539 ---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp ---CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred ---CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 123456889998665554 4566789999986543332222 11223445566544 5666666666776543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.035 Score=46.98 Aligned_cols=201 Identities=6% Similarity=0.076 Sum_probs=116.8
Q ss_pred ceeEEEEcCCCCEEEEec-CCCeEEEEECCCCceeeeeecc-----Cc--ceeEeec---CCCCCCEEEEEc--------
Q 019006 102 AILDLHWTTDGSQIISAS-PDKTLRAWDVETGKQIKKMAEH-----NS--FVNSCCP---SRRGPPLVVSGS-------- 162 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----~~--~v~~~~~---~~~~~~~~~s~~-------- 162 (347)
--.+.+|++....+..++ ..++|..|+...+......... .. ....+.+ .+. ..++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccc
Confidence 345678987555555554 7899999998755433222111 11 2234455 244 44555333
Q ss_pred -----CCCceEEEeCC---CCCceeecCC-------------C-CceEEEEEcCCCCeEEEEecC-CcEEEEeCCCCceE
Q 019006 163 -----DDGTAKLWDMR---QRGAIQTFPD-------------K-YQITAVSFSDASDKIYTGGID-NDVKVWDLRKGEVS 219 (347)
Q Consensus 163 -----~d~~i~iwd~~---~~~~~~~~~~-------------~-~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~ 219 (347)
.+..+..+|+. +++.+....- . .....++.+++|+..++++.- +.|..++.......
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 25778899998 6665433221 1 247899999999999988888 88888876533222
Q ss_pred EEe-cC----CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe-ccccc--cccceEEEEECCCCCE-
Q 019006 220 MTL-QG----HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE-GHQHN--FEKNLLKCGWSPDGSK- 290 (347)
Q Consensus 220 ~~~-~~----~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~s~~g~~- 290 (347)
.-. .. .....+.|+++|+++.|++....+.|..+|+.. +....+.... +.... ..+.+ +.--.+|+.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~--pv~~~v~~~~~G~~~~~~~~dgi--lp~~~~G~vl 248 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK--PYAWPEPVKINGDFGTLSGTEKI--VTVPVGNESV 248 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS--SSCCCEECEESSCCCCCTTEEEE--EEEEETTEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC--CcceeecccccCCcccccCcccc--cccccCCEEE
Confidence 111 11 112367999999999998887799999999873 2110111110 21111 11122 233346777
Q ss_pred EEEeeCCCeEEEEeCCC
Q 019006 291 VTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~ 307 (347)
|++.+..+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 45555666666666544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0032 Score=53.80 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=104.1
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeecc--CcceeEeecC-CCCCCEEEEE-cCCCceEEEeCCCCCceeecCC-----
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEH--NSFVNSCCPS-RRGPPLVVSG-SDDGTAKLWDMRQRGAIQTFPD----- 183 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~-~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~----- 183 (347)
..++.++.||.|.-.|..+|+...++... ...+..-... ..+...++.. +.||.+..+|..++.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999988887654 1122110011 1122233333 6899999999876643322211
Q ss_pred CCceEE---EEE-c----CCCCeEEEEecCCcEEEEeCCCCceEEEecCCC--Cce-----eEEEEC-----CCCCEEEE
Q 019006 184 KYQITA---VSF-S----DASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ--DMI-----TGMSLS-----PDGSYLLT 243 (347)
Q Consensus 184 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i-----~~v~~~-----~~~~~l~t 243 (347)
...+.. ..+ . ..+..+++|+.+|.+...|+++|+.+.++.... ..+ .+.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111110 000 0 145688999999999999999999988875321 100 011110 11345666
Q ss_pred EcCCCcEEEEeCCCCCCcCce-eEEEeccccccccceE-EEEECCCCCEEEEeeCCCeEEEEeCCCceeeE
Q 019006 244 NGMDCKLCIWDMRPYAPQNRC-VKILEGHQHNFEKNLL-KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312 (347)
Q Consensus 244 ~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~ 312 (347)
+..+..+.+.+ +... ..+. ........ ....+. .-..+.|+.+ +.++.||.|+-+|..++..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~--~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNV--LDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCT--TTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccc--cccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 66666665555 2211 1000 01111100 000000 0001235666 457889999999999888876
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.038 Score=47.07 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=117.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec----cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE----HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
...+.+|.|.+++..++ ++.+|.|. ...+.++.-..... ....+..+.+.+ ...++. +.++.|.. ....+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEE-EETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEE-ECCCeEEE-ECCCC
Confidence 34688888887777666 45677653 33333432222211 123455555543 234443 44554433 22223
Q ss_pred CceeecC----CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcE
Q 019006 176 GAIQTFP----DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKL 250 (347)
Q Consensus 176 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i 250 (347)
+.-.... ....+..+.+.+++..++ ++.+|.|+.- ...++.-. ....+...+..+.+.+++.+++.+...+..
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~ 186 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY 186 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 3322221 123466677665555444 4456655332 12232211 222344568899999998887776544444
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec----CCccCeeeEEE
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP----GHTGSVNESVF 326 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~ 326 (347)
+-+|-. .... ..+.. .....+..+.+.+++..++. +.+|.+++.+.+.++.-..+. .+...+..+++
T Consensus 187 ~S~d~g--G~tW---~~~~~---~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 187 STWEPG--QTAW---EPHNR---TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp EEECTT--CSSC---EEEEC---CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred EEeCCC--CCce---eECCC---CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 444421 0011 11111 11245777888999876654 457888877533343332222 12345888999
Q ss_pred cCCCCEEEEecCCCcEEe
Q 019006 327 HATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 327 ~~~~~~l~s~s~D~~i~i 344 (347)
.+++.+++.+. ++.|+.
T Consensus 258 ~~~~~~~~~g~-~g~i~~ 274 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGALLC 274 (327)
T ss_dssp SSSSCEEEEES-TTCEEE
T ss_pred cCCCEEEEEeC-CCeEEE
Confidence 98877776544 666643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.066 Score=46.83 Aligned_cols=137 Identities=9% Similarity=0.101 Sum_probs=84.0
Q ss_pred CcEEEEeCCCCceEEE--ecC--CCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC-CcC-----c--eeEEEecc--
Q 019006 206 NDVKVWDLRKGEVSMT--LQG--HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA-PQN-----R--CVKILEGH-- 271 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~--~~~--~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~-~~~-----~--~~~~~~~~-- 271 (347)
+.||.-++.....-+. ... .-+.|..+..+|+|++||..+.. .|.+-.+.... ... . ..+.+.-.
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 5677666653322222 221 12257889999999999998754 78888876211 010 0 11222211
Q ss_pred ccccccceEEEEECCC---CCEEEEeeCCCeEEEEeCCCce--ee--------EEecCCccCeeeEEEcCCCC--EEEEe
Q 019006 272 QHNFEKNLLKCGWSPD---GSKVTAGSSDRMVYIWDTTSRR--IL--------YKLPGHTGSVNESVFHATEP--VIGSC 336 (347)
Q Consensus 272 ~~~~~~~~~~~~~s~~---g~~l~sgs~dg~i~vwd~~~~~--~~--------~~~~~h~~~v~~~~~~~~~~--~l~s~ 336 (347)
.......|..+.|||- +..|++-..|+.|++||+.... +. +.+......|.+++|.+++= ++++.
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 1112356999999995 5689999999999999987521 11 12223346789999999764 34445
Q ss_pred cCCCcEE
Q 019006 337 SSDKQIY 343 (347)
Q Consensus 337 s~D~~i~ 343 (347)
+..|.||
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 5777776
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.041 Score=55.40 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=139.9
Q ss_pred CCcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 78 DRDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 78 d~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
...|.+-|+.......+ ...+ -+.-.+|..+.|+.- ...++.|+|+++...+..+..... |.-+.|....
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~A-----dsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~-- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccccc-----hhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCC-ceEEEecCCC--
Confidence 33677778754322211 1111 123357766655544 378999999998877776655443 4445555443
Q ss_pred EEEEEcCCCceEEEeCCCC-CceeecC-----CCCceEEEEEcCCCCeEEEEe-------cCCcEEEEeCCCCceEEEec
Q 019006 157 LVVSGSDDGTAKLWDMRQR-GAIQTFP-----DKYQITAVSFSDASDKIYTGG-------IDNDVKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~ 223 (347)
.++-. .+..|..|++... .+.+.+. ...+|.....+++.++++..| -.|.+.+|..+.+ ....+.
T Consensus 118 ~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie 195 (1630)
T 1xi4_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (1630)
T ss_pred eeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh
Confidence 23322 2357999999642 3333222 135688888888888776433 3467888887543 334455
Q ss_pred CCCCceeEEEEC--CCCCEEEEEc----CCCcEEEEeCCCC-CCcC----ceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 224 GHQDMITGMSLS--PDGSYLLTNG----MDCKLCIWDMRPY-APQN----RCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 224 ~~~~~i~~v~~~--~~~~~l~t~~----~d~~i~~wd~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
||...-..+... +....+++-. ..+.+.+-++... .... +.+...-... ...+-...+..++....+.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~-~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc-cccCcceEEEeccccCEEE
Confidence 664433333221 1112232211 1268888888542 1111 1111111100 1123345677788888899
Q ss_pred EeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcE
Q 019006 293 AGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342 (347)
Q Consensus 293 sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 342 (347)
.-+.-|.|++||+.++.+++.-+-....|...+.+....-++.....|.|
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence 99999999999999999887554444555544555444444444455544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.097 Score=45.06 Aligned_cols=229 Identities=12% Similarity=0.086 Sum_probs=118.4
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeeee---ccCcceeEeecCCC---CCCEEEEEcCC-----CceE
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQ--IKKMA---EHNSFVNSCCPSRR---GPPLVVSGSDD-----GTAK 168 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~~~s~~~d-----~~i~ 168 (347)
.-..|+|.|+|+++++ ..+|.|++++ +++. +..+. ........++++++ +..+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4578999999985555 5669999998 3332 11111 11233455667665 44455544432 5677
Q ss_pred EEeCCCCC------ceeecCC----CCceEEEEEcCCCCeEEEEec-------------CCcEEEEeCCCC---------
Q 019006 169 LWDMRQRG------AIQTFPD----KYQITAVSFSDASDKIYTGGI-------------DNDVKVWDLRKG--------- 216 (347)
Q Consensus 169 iwd~~~~~------~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~--------- 216 (347)
.++..... .+..++. ......++|.|++...++.+. .|.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 77765331 1122331 123467999999865555332 245666665420
Q ss_pred ----ceEEEecCCCCceeEEEECC-CCCEEEEEcCCCc--------EEEEeCCC-CC-C----------cCceeEEEecc
Q 019006 217 ----EVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDCK--------LCIWDMRP-YA-P----------QNRCVKILEGH 271 (347)
Q Consensus 217 ----~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~~--------i~~wd~~~-~~-~----------~~~~~~~~~~~ 271 (347)
.....-.++. ....++|+| +++.+++-...+. |.+..-.. +. + .......+..
T Consensus 189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~- 266 (352)
T 2ism_A 189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ- 266 (352)
T ss_dssp CTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT-
T ss_pred CCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC-
Confidence 1111112332 357789999 5665554332222 33332110 00 0 0001111110
Q ss_pred ccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee------eEEecCCccCeeeEEEcCCCCEEEEec-CCC
Q 019006 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI------LYKLPGHTGSVNESVFHATEPVIGSCS-SDK 340 (347)
Q Consensus 272 ~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~ 340 (347)
......++| .+|.++++.-..+.|...++..... ...+-.-...+.++++.|++.+.++.. .+|
T Consensus 267 ----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 267 ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp ----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred ----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 113445566 4677777766777888887764321 112212235689999999998777654 344
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.022 Score=49.01 Aligned_cols=138 Identities=11% Similarity=0.037 Sum_probs=80.5
Q ss_pred cCCcEEEEeCCCC--ce-EEEecC-----CCCceeEEEECC--CCC-EEEEE-cC--CCcEEEEeCCCCCCcCceeEEEe
Q 019006 204 IDNDVKVWDLRKG--EV-SMTLQG-----HQDMITGMSLSP--DGS-YLLTN-GM--DCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 204 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~i~~v~~~~--~~~-~l~t~-~~--d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
.+|.|.++|+.+. +. ...+.+ ..-....+.+.+ ++. +|+.+ .. +.++.+|++.........+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998732 21 222322 122466777755 343 34443 33 46788888765433333333343
Q ss_pred ccccccccceEEEEECCCCCEEEEee-----------------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCE
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGS-----------------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs-----------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 332 (347)
+. .-.....+.+.++|.+.++.. ..|.|+.+|.. +. ..+...-...+.++|+|+++.
T Consensus 161 g~---~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 161 HK---LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CT---TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSE
T ss_pred cC---CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCE
Confidence 32 224577888899999887764 23567777764 22 222222345799999999975
Q ss_pred EEE-ecCCCcEEeecC
Q 019006 333 IGS-CSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s-~s~D~~i~i~~~ 347 (347)
|.- -+..+.|+.+++
T Consensus 235 lYvadt~~~~I~~~~~ 250 (355)
T 3sre_A 235 VYIAELLAHKIHVYEK 250 (355)
T ss_dssp EEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCeEEEEEE
Confidence 554 445677877653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.035 Score=48.52 Aligned_cols=135 Identities=11% Similarity=0.173 Sum_probs=84.9
Q ss_pred CceEEEeCCCCCceeec--CC--CC-ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc------------eEEEecC---
Q 019006 165 GTAKLWDMRQRGAIQTF--PD--KY-QITAVSFSDASDKIYTGGIDNDVKVWDLRKGE------------VSMTLQG--- 224 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~~~--~~--~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~--- 224 (347)
+.||.-++......+.+ +. .+ .+..+..+|+|.+|+..+.. .|.|..+..+. ....+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 55666565533323222 21 23 67789999999999887654 68888776221 1112221
Q ss_pred ---CCCceeEEEECCC---CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccc-----ccceEEEEECCCCCEEEE
Q 019006 225 ---HQDMITGMSLSPD---GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF-----EKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 225 ---~~~~i~~v~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~s 293 (347)
....|..+.|||- +..|++-..|+.|++||+..... .+. .++.....+ ...+.+++|.+++-.|..
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 2467999999995 46788889999999999985221 111 222111111 256889999998877776
Q ss_pred ee--CCCeEEEE
Q 019006 294 GS--SDRMVYIW 303 (347)
Q Consensus 294 gs--~dg~i~vw 303 (347)
.+ .+|.|+-.
T Consensus 197 l~~t~~GDIYAl 208 (452)
T 3pbp_A 197 LNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSCEEEEE
T ss_pred EecCCCCCEEEE
Confidence 44 88888754
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.044 Score=43.35 Aligned_cols=145 Identities=10% Similarity=0.068 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce------EEEec--CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCC
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV------SMTLQ--GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRP 257 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~--~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~ 257 (347)
.+..++|+|++...++ .+|.++-.+..+... ...+- +-. .-..+.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999997765444 778888777654221 11110 111 1377899999998777 568888776422
Q ss_pred CCCcCcee---EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCce------eeEEec-CCccCeeeEEEc
Q 019006 258 YAPQNRCV---KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR------ILYKLP-GHTGSVNESVFH 327 (347)
Q Consensus 258 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~------~~~~~~-~h~~~v~~~~~~ 327 (347)
.. ....+ ..+-. .. -..+..+.+.|+|.+-+.. |+.++-.....+. ....+- +.-..-..+.|.
T Consensus 117 ~~-~~~Wl~~a~~vg~--~g-w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 117 SD-TDNWIARATEVGS--GG-WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp ST-TCCHHHHSEEEEC--SS-GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CC-CCceeccccEecc--CC-CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 11 11110 00100 01 1356888999999988777 7776655433211 011111 222234557799
Q ss_pred CCCCEEEEecCCCcEE
Q 019006 328 ATEPVIGSCSSDKQIY 343 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~ 343 (347)
+++.+.+.. ++.++
T Consensus 191 ~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TTSCEEEEE--TTEEE
T ss_pred CCCcEEEEe--CCeEE
Confidence 999887766 77665
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.07 E-value=0.3 Score=49.03 Aligned_cols=212 Identities=10% Similarity=0.079 Sum_probs=113.6
Q ss_pred eEEEEECCCCceeeeeeccC-cceeEe---ecCCCCCCEEEEEc----------CCCceEEEeCCCCCce--eecCCCCc
Q 019006 123 TLRAWDVETGKQIKKMAEHN-SFVNSC---CPSRRGPPLVVSGS----------DDGTAKLWDMRQRGAI--QTFPDKYQ 186 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~-~~v~~~---~~~~~~~~~~~s~~----------~d~~i~iwd~~~~~~~--~~~~~~~~ 186 (347)
.+++.|..+.+.+..+.-.. ..+.++ .+......+++.|+ ..|.|.+|++..++.. ...+.+..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 36667766665554443222 222222 23333345777775 3578999988643322 22233566
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
+++++--. | ++++| ...+|++|++...+... ....+. .|..+.....+++++.|..-..+.+...+.. ..+ +
T Consensus 888 v~al~~~~-g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~-L 960 (1158)
T 3ei3_A 888 VYSMVEFN-G-KLLAS-INSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGN-F 960 (1158)
T ss_dssp EEEEEEET-T-EEEEE-ETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTE-E
T ss_pred CEEEeeeC-C-EEEEE-cCCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCe-E
Confidence 77776432 3 44443 34689999997654322 221121 1333333335788888887777777654432 122 2
Q ss_pred EEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC--------ceeeEEecCCc-cCeeeEE---EcCC----
Q 019006 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS--------RRILYKLPGHT-GSVNESV---FHAT---- 329 (347)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~--------~~~~~~~~~h~-~~v~~~~---~~~~---- 329 (347)
..+.... ....+.++.+-.+ ..++.+..+|.|.++.... .++...-.-|- ..|+.+. +.+.
T Consensus 961 ~~~a~D~--~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A 961 EEIARDF--NPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp EEEEECC--SCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred EEEEeec--ccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence 2222211 2345667766544 4778899999999986543 12222222232 3455554 2332
Q ss_pred -----CCEEEEecCCCcEEe
Q 019006 330 -----EPVIGSCSSDKQIYL 344 (347)
Q Consensus 330 -----~~~l~s~s~D~~i~i 344 (347)
.+.+..++.+|.|.+
T Consensus 1038 ~~~~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1038 TSTPTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp ---CEEEEEEEEETTSCEEE
T ss_pred ccccccceEEEEecCCEEEE
Confidence 245778888888765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.04 E-value=0.32 Score=48.84 Aligned_cols=183 Identities=10% Similarity=0.045 Sum_probs=86.2
Q ss_pred cccEEEEEECCC------CCeEEEeeC-CCcEEEEeccCCCeeeE--EEeCcccceeEEEEc--CCCCEEEEecCCCeEE
Q 019006 57 QSAVYTMKFNPA------GTVIASGSH-DRDIFLWHVHGDCKNFM--VLKGHKNAILDLHWT--TDGSQIISASPDKTLR 125 (347)
Q Consensus 57 ~~~V~~v~~~~~------~~~l~s~~~-d~~v~~w~~~~~~~~~~--~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~ 125 (347)
...|.|+++.|. ++++|.|.. |++++++++.. ..... .+.. .....++.+. ....+|..|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 357899998763 368999996 99999999963 22221 1211 1122333322 2335788888999886
Q ss_pred EEECC--CCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCC--CCeE
Q 019006 126 AWDVE--TGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA--SDKI 199 (347)
Q Consensus 126 iwd~~--~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~--~~~l 199 (347)
.+.++ ++..... .......+.-..+...+..-+++.+ +.-..++--..+-....+....--....|+.. .+-+
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcE
Confidence 66553 3433211 1111222222211112222222222 33333333222111111121111123334432 2334
Q ss_pred EEEecCCcEEEEeCCCCc--eEEEecCCCCceeEEEECCCCCEEEEE
Q 019006 200 YTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTN 244 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~t~ 244 (347)
+.. .++.++|..+.... ...++.- ...+..++++|+.+.++.+
T Consensus 710 v~~-~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 710 ALA-NNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEE-CSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEE
T ss_pred EEE-cCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEE
Confidence 433 34568888764322 1222221 2456778888876655443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.15 Score=43.99 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=114.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe---CcccceeEEEEcCC---CCEEEEecC----C----C
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK---GHKNAILDLHWTTD---GSQIISASP----D----K 122 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~l~s~~~----d----g 122 (347)
-.....|+|.|+|++++ +..+|.|++++..+. ..+..+. ........|+++|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999998555 456699998875433 2222211 12345789999997 455554432 3 5
Q ss_pred eEEEEECCCC--ce-----e-eeeecc-CcceeEeecCCCCCCEEEEEcC-------------CCceEEEeCCCC-----
Q 019006 123 TLRAWDVETG--KQ-----I-KKMAEH-NSFVNSCCPSRRGPPLVVSGSD-------------DGTAKLWDMRQR----- 175 (347)
Q Consensus 123 ~i~iwd~~~~--~~-----~-~~~~~~-~~~v~~~~~~~~~~~~~~s~~~-------------d~~i~iwd~~~~----- 175 (347)
.|..|+.... .. + ..+... ......+.+.+++ .++++-+. .+.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 6777776543 11 1 112111 1122345666655 45554322 134444443321
Q ss_pred ----CceeecCCCCceEEEEEcCCCCeEEEEecCC----cEEEEeCCC--------C--------ceEEEe-cCCCCcee
Q 019006 176 ----GAIQTFPDKYQITAVSFSDASDKIYTGGIDN----DVKVWDLRK--------G--------EVSMTL-QGHQDMIT 230 (347)
Q Consensus 176 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~--------~--------~~~~~~-~~~~~~i~ 230 (347)
..+.... ......++|+|+...|+++.... .|.+...-. + .....+ ..| ....
T Consensus 185 pf~~~~i~a~G-~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-~ap~ 262 (354)
T 3a9g_A 185 PFPNSPIWSYG-HRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET-WAPS 262 (354)
T ss_dssp SSTTCCEEEEC-CSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CCEE
T ss_pred CCCCCcEEEEc-cCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC-cCCc
Confidence 0111111 11245788998444455443221 233322100 0 112223 222 3467
Q ss_pred EEEEC-------CCCCEEEEEcCCCcEEEEeCCCCCCcCcee--EEEeccccccccceEEEEECCCCCEEEEee
Q 019006 231 GMSLS-------PDGSYLLTNGMDCKLCIWDMRPYAPQNRCV--KILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 231 ~v~~~-------~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.++|. .+|.++++.-..+.|...++... .... ..+.. .....+..+++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~---g~~~~~~~~~~---~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN---MEVRKISTFFK---NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG---GCEEEEEEECT---TTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC---Ccccceeeecc---CCCCCeeEEEECCCCcEEEEEe
Confidence 78883 46666666666678888877531 1111 11110 1124577888999997666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.23 Score=46.35 Aligned_cols=216 Identities=8% Similarity=-0.083 Sum_probs=129.2
Q ss_pred CCCeEEEEECCCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC-CceEEEEEcCCCC
Q 019006 120 PDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK-YQITAVSFSDASD 197 (347)
Q Consensus 120 ~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~ 197 (347)
....|+..++.+......+.. .-.....+.+.+....++++-..++.|..+++........+... .....+++++.++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456788888876443222211 11234456666666677777778889988888754433333322 3567888887766
Q ss_pred eEEEE-ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 198 KIYTG-GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 198 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
.|+.+ ...+.|.+.++........+...-....+|++.|...+|+... ..+.|...++.... ...+-. .
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-----~~~l~~---~ 164 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-----RTTLVP---N 164 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEEEEC---S
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-----eEEEEC---C
Confidence 66554 4567899999865443333323334568999998666665554 24677777765321 111111 1
Q ss_pred cccceEEEEECCCCCEEEEee-CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 275 FEKNLLKCGWSPDGSKVTAGS-SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
-.....++++++++.|..+. ..+.|..+|+..... ..+...-.....+++.. +.+..|-...+.|...|
T Consensus 165 -~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 165 -VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp -CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred -CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 13467888999877777664 567899999865433 22333333456777765 45555655566665543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.17 Score=43.53 Aligned_cols=235 Identities=9% Similarity=0.032 Sum_probs=118.8
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-------ccCcceeEeecCCC---CCCEEEEEcC-------C
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-------EHNSFVNSCCPSRR---GPPLVVSGSD-------D 164 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~~~~s~~~-------d 164 (347)
....|+|.|+|+.|+.+...|.|++++.. ++....+. ........++++++ +..+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999834444567999998853 32211111 11122345666664 3444444332 2
Q ss_pred CceEEEeCCCCC-------c-eeecCC----CCceEEEEEcCCCCeEEEEec-------------CCcEEEEeCCCC---
Q 019006 165 GTAKLWDMRQRG-------A-IQTFPD----KYQITAVSFSDASDKIYTGGI-------------DNDVKVWDLRKG--- 216 (347)
Q Consensus 165 ~~i~iwd~~~~~-------~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~--- 216 (347)
..|..+++.... . +..++. ......+.|.|++.+.++.+. .|+|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 245555554221 1 112221 122467999999855444332 246766775422
Q ss_pred ----------ceEEEecCCCCceeEEEECC-CCCEEEEEc-CCCcEEEEeCCCCCCc-----------------------
Q 019006 217 ----------EVSMTLQGHQDMITGMSLSP-DGSYLLTNG-MDCKLCIWDMRPYAPQ----------------------- 261 (347)
Q Consensus 217 ----------~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~-~d~~i~~wd~~~~~~~----------------------- 261 (347)
.....-.++. ....++|+| +++..++-. .++.=.|.-+.....-
T Consensus 178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111112333 367899999 555444322 1211122211111000
Q ss_pred ----CceeEEEeccccccccceEEEEECC-------CCCEEEEeeCCCeEEEEeCCCceeeEE--e-cCCccCeeeEEEc
Q 019006 262 ----NRCVKILEGHQHNFEKNLLKCGWSP-------DGSKVTAGSSDRMVYIWDTTSRRILYK--L-PGHTGSVNESVFH 327 (347)
Q Consensus 262 ----~~~~~~~~~~~~~~~~~~~~~~~s~-------~g~~l~sgs~dg~i~vwd~~~~~~~~~--~-~~h~~~v~~~~~~ 327 (347)
......+.. ......+.|.. +|.++++.-..+.|...++..++.... + ..-...+.++++.
T Consensus 257 ~~~~~~P~~~~~~-----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 257 VAGTEQPVFYWKD-----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CTTSCCCSEEESS-----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCccCCeEEeCC-----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 000000100 12345566643 577777777788888888876543322 2 2223478999999
Q ss_pred CCCCEEEEec-CCCcEE
Q 019006 328 ATEPVIGSCS-SDKQIY 343 (347)
Q Consensus 328 ~~~~~l~s~s-~D~~i~ 343 (347)
|++.+.++.. .+|.|+
T Consensus 332 pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 332 PDGYLYVLTDESSGELL 348 (353)
T ss_dssp TTSCEEEEECSTTEEEE
T ss_pred CCCcEEEEEeCCCCEEE
Confidence 9999777544 566554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.29 Score=43.03 Aligned_cols=177 Identities=10% Similarity=0.150 Sum_probs=109.9
Q ss_pred CcEEEEeccCCCeeeEEEeCcc----cceeEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHK----NAILDLHWTTDGSQIISAS-------PDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
..|+-|++.++..+...+..|. ..|..-.-+++.+.++..| -.|.+.+|..+.+. .+.+.+|......
T Consensus 125 taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (494)
T ss_dssp SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE
T ss_pred CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE
Confidence 5689999977666666676664 3577777788888776543 24778999887543 2344445433222
Q ss_pred eecCC--CCCCEEEEEcCC---CceEEEeCCCC---C-ce-----e-ecCC---CCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 148 CCPSR--RGPPLVVSGSDD---GTAKLWDMRQR---G-AI-----Q-TFPD---KYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 148 ~~~~~--~~~~~~~s~~~d---~~i~iwd~~~~---~-~~-----~-~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+.... ....+++.+... +++.+.++... . .. . .++. ..-..++..++..+.++.-+.-|.|+
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ 283 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 283 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence 22111 111244444432 78888888532 1 11 1 1122 12345677888888999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
+||+.++.++..-+-..+.|..-+-+....-++.....|.|.--.+.
T Consensus 284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 99999999888766555666655555555556666677766555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.25 Score=42.24 Aligned_cols=146 Identities=12% Similarity=0.139 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE--EEec----CCCCceeEEEECCC---CCEEEEE---cCCCcEEE
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS--MTLQ----GHQDMITGMSLSPD---GSYLLTN---GMDCKLCI 252 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~----~~~~~i~~v~~~~~---~~~l~t~---~~d~~i~~ 252 (347)
.....++|.|++..+++--..|.|++++...++.. ..+. ........|+++|+ +.+|... ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 35688999999886665555899999986655432 1121 12345789999995 4445432 24456666
Q ss_pred EeCCCCC----C---cCceeEEEeccccccccceEEEEECCCCCEEEEeeC-------------CCeEEEEeCCCc----
Q 019006 253 WDMRPYA----P---QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-------------DRMVYIWDTTSR---- 308 (347)
Q Consensus 253 wd~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-------------dg~i~vwd~~~~---- 308 (347)
|.+.... . ....+..+.. .. ......+.|.|||.+.++-+. -|.|.-++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~--~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK-GV--IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC-CS--SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC-CC--CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 6654311 0 0111111221 01 112346789999987776432 366666665532
Q ss_pred -----eeeEEecCCccCeeeEEEcCCCCEEEE
Q 019006 309 -----RILYKLPGHTGSVNESVFHATEPVIGS 335 (347)
Q Consensus 309 -----~~~~~~~~h~~~v~~~~~~~~~~~l~s 335 (347)
..++. .+|. ....++|+|++.+.++
T Consensus 189 nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 189 NPFPGSPVYS-YGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp CSSTTCCEEE-BCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCCCeEEe-eCCC-CcceEEECCCCCEEEE
Confidence 12222 2554 4678999998775543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.29 Score=42.10 Aligned_cols=232 Identities=12% Similarity=0.024 Sum_probs=122.3
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCc-eeeeee---ccCcceeEeecCCC---CCCEEEEEcC---C----Cce
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGK-QIKKMA---EHNSFVNSCCPSRR---GPPLVVSGSD---D----GTA 167 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~~s~~~---d----~~i 167 (347)
....|+|.|+|+++++ ..+|.|++++ .+++ .+..+. ........+++.+. +..+.++-+. + ..|
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4578999999875554 5569999887 3443 121111 11223455667665 4445554432 2 456
Q ss_pred EEEeCCCC--C-----c-eeecCC--CCceEEEEEcCCCCeEEEEec-------------CCcEEEEeCCCC--------
Q 019006 168 KLWDMRQR--G-----A-IQTFPD--KYQITAVSFSDASDKIYTGGI-------------DNDVKVWDLRKG-------- 216 (347)
Q Consensus 168 ~iwd~~~~--~-----~-~~~~~~--~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~-------- 216 (347)
..++.... . . +..++. ......+.|.|++...++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 66766543 1 1 111221 123467899999976665332 245666665421
Q ss_pred ceEEEecCCCCceeEEEECC-CCCEEEEEcCCC---cEEEEeCCC-CC---------C--cCceeEEEeccccccccceE
Q 019006 217 EVSMTLQGHQDMITGMSLSP-DGSYLLTNGMDC---KLCIWDMRP-YA---------P--QNRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~-~~~~l~t~~~d~---~i~~wd~~~-~~---------~--~~~~~~~~~~~~~~~~~~~~ 280 (347)
.....-.++.. ...++|+| +++.+++-...+ .|.+..-.. +. . .......+. + ......
T Consensus 188 ~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~---~~~ap~ 262 (354)
T 3a9g_A 188 NSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-S---ETWAPS 262 (354)
T ss_dssp TCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T---CCCCEE
T ss_pred CCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-C---CCcCCc
Confidence 11111223433 57899999 566555433222 244332110 00 0 000111110 0 012456
Q ss_pred EEEEC-------CCCCEEEEeeCCCeEEEEeCCCc-eee--EEe-cCCccCeeeEEEcCCCCEEEEec-CCC
Q 019006 281 KCGWS-------PDGSKVTAGSSDRMVYIWDTTSR-RIL--YKL-PGHTGSVNESVFHATEPVIGSCS-SDK 340 (347)
Q Consensus 281 ~~~~s-------~~g~~l~sgs~dg~i~vwd~~~~-~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~s-~D~ 340 (347)
.++|. .+|.++++.-..+.|...++... +.. ..+ .+-...+.++++.|++.+.++.. .+|
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~~G 334 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNRDG 334 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTTSS
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCCCC
Confidence 66773 57777777777788999988753 222 233 23345789999999998877764 344
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.25 Score=41.09 Aligned_cols=172 Identities=12% Similarity=0.086 Sum_probs=83.9
Q ss_pred CCEEEEEcCC-----CceEEEeCCCCC---cee--ecCCC-CceEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCce
Q 019006 155 PPLVVSGSDD-----GTAKLWDMRQRG---AIQ--TFPDK-YQITAVSFSDASDKIYTGGID-----NDVKVWDLRKGEV 218 (347)
Q Consensus 155 ~~~~~s~~~d-----~~i~iwd~~~~~---~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 218 (347)
..+++.|+.+ ..+.+||+.+.. -.. .++.. .....+.+ ++..++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 3566667654 458889987765 222 22221 12222223 45566666643 3588999877642
Q ss_pred EE--EecCCCCceeEEEECCCCCEEEEEcCC-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 219 SM--TLQGHQDMITGMSLSPDGSYLLTNGMD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 219 ~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
.. .+..... -.+++. .+++.++.||.+ ..+.+||.... .. ..+....... .....+. -++.++
T Consensus 141 ~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~----~W-~~~~~~p~~r-~~~~~~~--~~~~i~ 210 (301)
T 2vpj_A 141 SMLGDMQTARE-GAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTG----HW-TNVTPMATKR-SGAGVAL--LNDHIY 210 (301)
T ss_dssp EEEEECSSCCB-SCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT----EE-EEECCCSSCC-BSCEEEE--ETTEEE
T ss_pred EECCCCCCCcc-cceEEE-ECCEEEEECCCCCCcccceEEEEeCCCC----cE-EeCCCCCccc-ccceEEE--ECCEEE
Confidence 22 2211111 112222 256666676654 35778887532 11 1111111100 1111122 256777
Q ss_pred EEeeCC-----CeEEEEeCCCceeeE--EecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 292 TAGSSD-----RMVYIWDTTSRRILY--KLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 292 ~sgs~d-----g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
+.|+.+ ..+.+||..+.+-.. .++... ....+..-++++++.++.++
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR--CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCBCS
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc--cceeEEEECCEEEEEcCcCC
Confidence 777754 468999998765332 122111 11122223667888887663
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.38 Score=42.96 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=58.7
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE--EEecC------CCCceeEEEECCC---CCEEEEEcC--------
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS--MTLQG------HQDMITGMSLSPD---GSYLLTNGM-------- 246 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~------~~~~i~~v~~~~~---~~~l~t~~~-------- 246 (347)
....++|.|++..+++-...+.|++++...++.. ..+.. ...-+..|+|+|+ +.+|..+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4678999999886665444347888876555432 22221 1344679999995 555544432
Q ss_pred -----CCcEEEEeCCCCCCcC-ceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 247 -----DCKLCIWDMRPYAPQN-RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 247 -----d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
...|..++........ .....+.............++|.|||.+.++-+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345555543211110 111111111101112367889999998777643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.4 Score=39.93 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCEEEEEcCC-----CceEEEeCCCCCceee--cCCC-CceEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCceEEE
Q 019006 155 PPLVVSGSDD-----GTAKLWDMRQRGAIQT--FPDK-YQITAVSFSDASDKIYTGGIDN-----DVKVWDLRKGEVSMT 221 (347)
Q Consensus 155 ~~~~~s~~~d-----~~i~iwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 221 (347)
..+++.|+.+ ..+.+||..+..-... ++.. .....+.+ ++..++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 3466666644 3577888876543221 2221 12222222 455666676553 477889876642221
Q ss_pred --ecCCCCceeEEEECCCCCEEEEEcCC-------CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEE
Q 019006 222 --LQGHQDMITGMSLSPDGSYLLTNGMD-------CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 222 --~~~~~~~i~~v~~~~~~~~l~t~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 292 (347)
+..... -.+++. .+++.++.||.+ ..+.+||+... ... .+....... .....+. -++.+++
T Consensus 140 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----~W~-~~~~~p~~r-~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 140 APMNTRRS-SVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN----EWT-YIAEMSTRR-SGAGVGV--LNNLLYA 209 (302)
T ss_dssp CCCSSCCB-SCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTT----EEE-EECCCSSCC-BSCEEEE--ETTEEEE
T ss_pred CCCCCccc-CceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC----cEE-ECCCCcccc-ccccEEE--ECCEEEE
Confidence 111111 112222 245666666542 34778887532 111 111111100 1111122 2567777
Q ss_pred EeeCC-----CeEEEEeCCCceeeEEecCCc-cCeeeEEEcCCCCEEEEecCCC
Q 019006 293 AGSSD-----RMVYIWDTTSRRILYKLPGHT-GSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 293 sgs~d-----g~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.|+.+ ..+.+||..+.+-.. +.... ..-...+..-++++++.++.++
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred ECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCcCC
Confidence 77754 468999988765332 21111 1111112223667888888664
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.5 Score=39.61 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=81.5
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC----C-------CeEEEEECCCCceeeeeec
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP----D-------KTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~~~ 140 (347)
++.|+ ..+..||...+.-....+..............++..++.|+. + ..+.+||..+.+-. .+..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCC
Confidence 44455 467888875432111222211112222223346777777773 1 12677888765432 1111
Q ss_pred cCc--ceeEeecCCCCCCEEEEEcCC--------CceEEEeCCCCCcee--ecCCC-CceEEEEEcCCCCeEEEEec-C-
Q 019006 141 HNS--FVNSCCPSRRGPPLVVSGSDD--------GTAKLWDMRQRGAIQ--TFPDK-YQITAVSFSDASDKIYTGGI-D- 205 (347)
Q Consensus 141 ~~~--~v~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~-d- 205 (347)
-.. .-..++.. +..+++.|+.+ ..+.+||..+..-.. .++.. .....+.+ ++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTT
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCC
Confidence 111 01111111 33566666632 457888887654222 22221 11222222 4456666765 2
Q ss_pred ----CcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCC-----cEEEEeCCC
Q 019006 206 ----NDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDC-----KLCIWDMRP 257 (347)
Q Consensus 206 ----g~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~-----~i~~wd~~~ 257 (347)
..+.+||+.+.+-.. .+..... -.+++. -+++.++.||.++ .+.+||...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCC
Confidence 468999987764221 1111111 112222 2566777777554 477788753
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.55 Score=38.98 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=89.0
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCc---ee--eeeeccCcceeEeecCCCCCCEEEEEcCC-----CceEEEeCCCC
Q 019006 111 DGSQIISASPD-----KTLRAWDVETGK---QI--KKMAEHNSFVNSCCPSRRGPPLVVSGSDD-----GTAKLWDMRQR 175 (347)
Q Consensus 111 ~~~~l~s~~~d-----g~i~iwd~~~~~---~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~ 175 (347)
++..++.|+.+ ..+.+||..+.+ -. ..+...... ..++.. +..+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 45666777754 358889987765 21 111111111 111111 23566666543 35778887765
Q ss_pred Cce--eecCCC-CceEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEEc
Q 019006 176 GAI--QTFPDK-YQITAVSFSDASDKIYTGGID-----NDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 176 ~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~~ 245 (347)
.-. ..++.. .....+.+ ++..++.|+.+ ..+.+||+.+.+-... +..... -.++.. .++..++.||
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~~~~i~v~GG 214 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVAL-LNDHIYVVGG 214 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTEEEEECC
T ss_pred eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEE-ECCEEEEEeC
Confidence 432 222221 11222222 45566666654 4588999877643221 111111 112222 2456666776
Q ss_pred CC-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCce
Q 019006 246 MD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRR 309 (347)
Q Consensus 246 ~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~ 309 (347)
.+ ..+.+||+... .. ..+...... ......+. -++++++.|+.+ ..+.+||..+.+
T Consensus 215 ~~~~~~~~~v~~yd~~~~----~W-~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTD----SW-TTVTSMTTP-RCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCSSSBCCCEEEEETTTT----EE-EEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCC----cE-EECCCCCCc-ccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 54 46888887632 11 112111110 01111222 256777777755 457888887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.76 Score=38.24 Aligned_cols=185 Identities=11% Similarity=0.102 Sum_probs=89.1
Q ss_pred CCCEEEEecCC----CeEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCC------CceEEEeCCCCCce
Q 019006 111 DGSQIISASPD----KTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMRQRGAI 178 (347)
Q Consensus 111 ~~~~l~s~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~ 178 (347)
++..++.|+.+ ..+.+||..+.+-.. .+...... ..++.. +..+++.|+.+ ..+.+||..+..-.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-LAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-CEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-eeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 45666777654 568888988764322 11111111 111111 33566667654 45788888765432
Q ss_pred ee--cCCC-CceEEEEEcCCCCeEEEEec---------CCcEEEEeCCCCceEEEecCCCC-ceeEEEECCCCCEEEEEc
Q 019006 179 QT--FPDK-YQITAVSFSDASDKIYTGGI---------DNDVKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNG 245 (347)
Q Consensus 179 ~~--~~~~-~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~-~i~~v~~~~~~~~l~t~~ 245 (347)
.. ++.. .....+.+ ++..++.|+. ...+.+||+.+.+-...-..... .-.++... +++.++.||
T Consensus 132 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence 22 2221 11222222 4455555653 34588999887642221111111 11122222 556666666
Q ss_pred CC-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCce
Q 019006 246 MD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRR 309 (347)
Q Consensus 246 ~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~ 309 (347)
.+ ..+.+||+... .. ..+...... ......+.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 209 ~~~~~~~~~~~~yd~~~~----~W-~~~~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLN----EW-KMVSPMPWK-GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTEEBCCEEEEETTTT----EE-EECCCCSCC-BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCCCceEEEeeCCCC----cE-EECCCCCCC-ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 43 35778887632 11 111111100 011122222 66777788744 568899987754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.68 Score=39.56 Aligned_cols=28 Identities=7% Similarity=0.078 Sum_probs=17.6
Q ss_pred CCCCEEEEeeCCC------eEEEEeCCCceeeEE
Q 019006 286 PDGSKVTAGSSDR------MVYIWDTTSRRILYK 313 (347)
Q Consensus 286 ~~g~~l~sgs~dg------~i~vwd~~~~~~~~~ 313 (347)
.++++++.|+.++ .|.++++++++.+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 4677777887542 366668877776654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.52 E-value=1 Score=38.51 Aligned_cols=79 Identities=10% Similarity=0.160 Sum_probs=48.8
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-eeEEE----eCcccceeEEEEcCC---CCEEEEe---cCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-NFMVL----KGHKNAILDLHWTTD---GSQIISA---SPD 121 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~----~~h~~~v~~~~~~~~---~~~l~s~---~~d 121 (347)
+...-...+.|+|.|+|.++++--..|.|++++..+... .+..+ .........|+++|+ +..|+.. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 334456788999999999887776689999887542222 12111 122456789999995 3444432 234
Q ss_pred CeEEEEECCC
Q 019006 122 KTLRAWDVET 131 (347)
Q Consensus 122 g~i~iwd~~~ 131 (347)
..|.-|....
T Consensus 107 ~~v~R~~~~~ 116 (347)
T 3das_A 107 NRIVRMLYDE 116 (347)
T ss_dssp EEEEEEEBCT
T ss_pred CEEEEEEeCC
Confidence 4565566554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.12 E-value=1.2 Score=37.17 Aligned_cols=209 Identities=6% Similarity=0.032 Sum_probs=104.5
Q ss_pred CCCeEEEee--CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC--------------CeEEEEECCC
Q 019006 68 AGTVIASGS--HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD--------------KTLRAWDVET 131 (347)
Q Consensus 68 ~~~~l~s~~--~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~ 131 (347)
++..+.-.. .++.|+..+.++.. ...+... . +-.+++++++|+-+... ..|+..+++.
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~--~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSN--IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCS--CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCC--CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 455444332 34556655554432 2222221 1 23457888888766542 3577777766
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEE---cCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEec-CCc
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSG---SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-DND 207 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 207 (347)
.+.. .+..... ..+ .+.+..+..+- .....|...++..........+.. ..++++++.|+-.+. ...
T Consensus 98 ~~~~-~l~~~~~--~~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 98 HGST-VLDPDPC--IYA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp CCCE-EEECSCE--EEE--EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred Ccce-EeecCCc--cEE--EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence 5432 2222211 122 22333444443 233445555655433322222221 345677787775554 678
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC--CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEEC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD--CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 285 (347)
|+..++..+.....+.+ ... ..+.|++.+|+-...+ ..|..-++.... ...+.. ..+ ..|+
T Consensus 169 Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-----~~~Lt~------~~~--~~~~ 231 (302)
T 3s25_A 169 LYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-----PVVLTE------ANI--EHYN 231 (302)
T ss_dssp EEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-----CEECSC------SCE--EEEE
T ss_pred EEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-----eEEEeC------CCc--ceEE
Confidence 99888876654433332 222 3356888888765443 245555554211 122211 112 2378
Q ss_pred CCCCEEEEee--CCCeEEEEeCCCc
Q 019006 286 PDGSKVTAGS--SDRMVYIWDTTSR 308 (347)
Q Consensus 286 ~~g~~l~sgs--~dg~i~vwd~~~~ 308 (347)
|++.+|.-++ ..+.|..-++...
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSC
T ss_pred ECCCEEEEEECCCCcEEEEEECCCC
Confidence 8898887653 3456777777543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.09 E-value=1.4 Score=37.69 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=37.5
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe-eeEEE----eCcccceeEEEEcCC---CCEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK-NFMVL----KGHKNAILDLHWTTD---GSQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~----~~h~~~v~~~~~~~~---~~~l~s~ 118 (347)
-.....|+|.|+|+.|.++...|.|++++..+... .+..+ .........|+++|+ +..|+.+
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 34678999999999344555679999887543211 11101 112345689999996 4555444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.2 Score=36.91 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=97.5
Q ss_pred EEEEecC--CCeEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCC----CceEEEeCCCCCcee--ecCC
Q 019006 114 QIISASP--DKTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDD----GTAKLWDMRQRGAIQ--TFPD 183 (347)
Q Consensus 114 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~--~~~~ 183 (347)
.++.|+. ...+.+||..+.+-.. .+....... .++.. +..+++.|+.+ ..+.+||..+..-.. .++.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3444544 3568888887764321 111111111 11111 33466677654 567788887654322 2222
Q ss_pred C-CceEEEEEcCCCCeEEEEecC------CcEEEEeCCCCceEEEecCCCC-ceeEEEECCCCCEEEEEcC---------
Q 019006 184 K-YQITAVSFSDASDKIYTGGID------NDVKVWDLRKGEVSMTLQGHQD-MITGMSLSPDGSYLLTNGM--------- 246 (347)
Q Consensus 184 ~-~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-~i~~v~~~~~~~~l~t~~~--------- 246 (347)
. .....+.+ ++..++.|+.+ ..+.+||..+.+-...-..... .-.+++. .+++.++.||.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 1 12222233 45566667654 4588999887642221111111 1112222 24566666653
Q ss_pred CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCceee--EEecCCcc
Q 019006 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRRIL--YKLPGHTG 319 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~~~--~~~~~h~~ 319 (347)
-..+.+||.... .. ..+....... .....+.+ ++++++.|+.+ ..+.+||..+.+-. ..++....
T Consensus 168 ~~~~~~yd~~~~----~W-~~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 168 LNSCEVYDPATE----TW-TELCPMIEAR-KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp CCCEEEEETTTT----EE-EEECCCSSCC-BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred cceEEEeCCCCC----eE-EECCCccchh-hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 345778887632 11 1121111100 11111222 56677777653 46889998876432 12221111
Q ss_pred CeeeEEEcCCCCEEEEecCC
Q 019006 320 SVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 320 ~v~~~~~~~~~~~l~s~s~D 339 (347)
....+.+ ++++++.+|.+
T Consensus 240 ~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp CCEEEEE--TTEEEEEECBC
T ss_pred ceeEEEE--CCEEEEEeCcC
Confidence 1222222 66788888765
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.6 Score=36.66 Aligned_cols=190 Identities=11% Similarity=0.130 Sum_probs=99.8
Q ss_pred CCCEEEEecCCCeEEEEECCCCceee---------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEE---eCCCC---
Q 019006 111 DGSQIISASPDKTLRAWDVETGKQIK---------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---DMRQR--- 175 (347)
Q Consensus 111 ~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw---d~~~~--- 175 (347)
+...+++.+.+|.|+--.+...+... .+... ..+..+...... ..++..+..|.+.-+ +++..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~-~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTH-DHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 44567888888888877665432111 11122 222222211222 234555667775554 33322
Q ss_pred ---Ccee---ecCCCCceEEEEE-c--CCCCeEEEEecCCcEEEEeCCC-------CceEEEecCCCCceeEEEECCCCC
Q 019006 176 ---GAIQ---TFPDKYQITAVSF-S--DASDKIYTGGIDNDVKVWDLRK-------GEVSMTLQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 176 ---~~~~---~~~~~~~v~~~~~-~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~~~ 239 (347)
.++. .+.....|..+.. . .++.+++..+.+|.++--.+.. +.....+..+ +.+..+.......
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 1111 1233345555433 2 3456788999999999886531 2222334444 4555555444556
Q ss_pred EEEEEcCCCcEEEEeCCCCCCcCc---eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 240 YLLTNGMDCKLCIWDMRPYAPQNR---CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 240 ~l~t~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.++..+.+|.+..++........+ -+..+. ..-.+.+..+..-+++..|+..+..|.++..++.
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~---L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR---LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC---CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE---eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 777788888888887654332222 111111 1112456666554566788999999999988763
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.5 Score=36.37 Aligned_cols=184 Identities=13% Similarity=0.190 Sum_probs=87.4
Q ss_pred CCCEEEEecCC-----CeEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCCC-----ceEEEeCCCCCce
Q 019006 111 DGSQIISASPD-----KTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDG-----TAKLWDMRQRGAI 178 (347)
Q Consensus 111 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~~~ 178 (347)
++..++.|+.+ ..+.+||..+.+-.. .+...... ..++.. +..+++.|+.++ .+.+||+.+..-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 55666777654 357888887654321 11111111 111111 234666666543 4667887765432
Q ss_pred ee--cCCC-CceEEEEEcCCCCeEEEEec-------CCcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEEcC
Q 019006 179 QT--FPDK-YQITAVSFSDASDKIYTGGI-------DNDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTNGM 246 (347)
Q Consensus 179 ~~--~~~~-~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~~~ 246 (347)
.. ++.. .....+.+ ++..++.|+. ...+.+||+.+.+-... +..... -.+++. .++..++.||.
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~ 213 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGV-LNNLLYAVGGH 213 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTEEEEECCB
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEE-ECCEEEEECCC
Confidence 22 2221 11222222 4455556654 24588999877642221 111111 112222 25666677765
Q ss_pred C-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-----eEEEEeCCCce
Q 019006 247 D-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-----MVYIWDTTSRR 309 (347)
Q Consensus 247 d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-----~i~vwd~~~~~ 309 (347)
+ ..+.+||.... .. ..+....... .....+. .++++++.|+.++ .+.+||..+.+
T Consensus 214 ~~~~~~~~~~~yd~~~~----~W-~~~~~~~~~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTN----AW-RQVADMNMCR-RNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSSBCCCEEEEETTTT----EE-EEECCCSSCC-BSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCcccceEEEEeCCCC----CE-eeCCCCCCcc-ccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 4 36888887632 11 1121111100 1111111 2667777777553 48899987764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.1 Score=38.15 Aligned_cols=40 Identities=5% Similarity=-0.163 Sum_probs=20.8
Q ss_pred eEEEEeCCCce--eeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 299 MVYIWDTTSRR--ILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 299 ~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
.+.+||+.+.+ .+..++..... ..+...++++++.+|.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCC
Confidence 57789987654 23333322221 223345678888888654
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.64 E-value=2 Score=37.11 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=102.2
Q ss_pred cCCCCEEEEecCCCeEEEEECCCC---------ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE---eCCCC-
Q 019006 109 TTDGSQIISASPDKTLRAWDVETG---------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---DMRQR- 175 (347)
Q Consensus 109 ~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw---d~~~~- 175 (347)
-|+...+++.+.+|.|+--.+... .....+.. ...+..+...... ..++..+..|.+.-+ +++..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~-d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTH-DTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTT-CEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCC-CEEEEEeCCCeEEEEEHHHCcCCC
Confidence 356778899999999987654321 11122222 2333333322233 334445666766544 44322
Q ss_pred -----Ccee---ecCCCCceEEEE-Ec--CCCCeEEEEecCCcEEEEeCCC-------CceEEEecCCCCceeEEEECCC
Q 019006 176 -----GAIQ---TFPDKYQITAVS-FS--DASDKIYTGGIDNDVKVWDLRK-------GEVSMTLQGHQDMITGMSLSPD 237 (347)
Q Consensus 176 -----~~~~---~~~~~~~v~~~~-~~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~~~ 237 (347)
..+. .+.....|..+. +. ....+++.++..|.++.-.+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1111 123334555544 33 2356899999999999876532 222233433 344545554455
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEECC----------------------------
Q 019006 238 GSYLLTNGMDCKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWSP---------------------------- 286 (347)
Q Consensus 238 ~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~---------------------------- 286 (347)
...++..+.+|.+..++.......++. ++.++- .-.+.+..+..-+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L---~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL---AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC---CTTCCEEEEEEECCC--------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe---CCCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 567788888888888876543322221 111111 1123344443322
Q ss_pred -------CCCEEEEeeCCCeEEEEeCCC
Q 019006 287 -------DGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 287 -------~g~~l~sgs~dg~i~vwd~~~ 307 (347)
++..|++.+..|+.+...+..
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGG
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHH
Confidence 456899999999999987643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.60 E-value=1.7 Score=36.27 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=94.3
Q ss_pred EEEecCCCeEEEEECCCCceee-eeecc-CcceeEeecCCCCCCEEEEEcC-----C------CceEEEeCCCCCcee--
Q 019006 115 IISASPDKTLRAWDVETGKQIK-KMAEH-NSFVNSCCPSRRGPPLVVSGSD-----D------GTAKLWDMRQRGAIQ-- 179 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~s~~~-----d------~~i~iwd~~~~~~~~-- 179 (347)
++.|+ ..+.+||..+.+-.. .+... ...-.+++. .+..+++.|+. . ..+..||..+..-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT--KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC--TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE--ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 34444 568889988766422 11111 111112222 23456676763 1 126678887654322
Q ss_pred ecCCC-CceEEEEEcCCCCeEEEEecC--------CcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcC-C
Q 019006 180 TFPDK-YQITAVSFSDASDKIYTGGID--------NDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGM-D 247 (347)
Q Consensus 180 ~~~~~-~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~-d 247 (347)
.++.. .....+.+ ++..++.|+.+ ..+.+||..+.+-.. .+.... .-.+++. .+++.++.||. +
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-YGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEE-ETTEEEEECCBCT
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-cceeEEE-ECCEEEEEeCCCC
Confidence 12211 11122222 44555666632 458899988764221 111111 1112222 34566666665 2
Q ss_pred -----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC-----eEEEEeCCCceeeEEecCC
Q 019006 248 -----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR-----MVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 248 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~h 317 (347)
..+.+||.... .. ..+...... ......+. -++++++.|+.++ .+.+||..+.+-...-+-.
T Consensus 160 ~~~~~~~~~~yd~~~~----~W-~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 231 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKF----EW-KELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP 231 (315)
T ss_dssp TSCBCCCEEEEETTTT----EE-EECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred CCcccceEEEEeCCCC----eE-EECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence 35788887632 11 111111100 01111122 2567777777554 5888998876433211111
Q ss_pred ccCeeeEEEcCCCCEEEEecCC
Q 019006 318 TGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 318 ~~~v~~~~~~~~~~~l~s~s~D 339 (347)
.......+..-++++++.+|.+
T Consensus 232 ~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 232 QERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp SCCBSCEEEEETTEEEEEEEEE
T ss_pred CcccceeEEEECCEEEEECCcc
Confidence 1111111222356777777764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.34 E-value=1.9 Score=35.82 Aligned_cols=172 Identities=11% Similarity=0.087 Sum_probs=81.0
Q ss_pred CCEEEEEcC----C-----CceEEEeCCCCCceee--cCCC-CceEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCc
Q 019006 155 PPLVVSGSD----D-----GTAKLWDMRQRGAIQT--FPDK-YQITAVSFSDASDKIYTGGID-----NDVKVWDLRKGE 217 (347)
Q Consensus 155 ~~~~~s~~~----d-----~~i~iwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 217 (347)
..+++.|+. + ..+.+||..+..-... ++.. .....+.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 346666654 2 4578888876542221 2211 12222333 45566666643 468899987664
Q ss_pred eEEE--ecCCCCceeEEEECCCCCEEEEEcCC-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCE
Q 019006 218 VSMT--LQGHQDMITGMSLSPDGSYLLTNGMD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 218 ~~~~--~~~~~~~i~~v~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
-... +......-..+.+ ++..++.||.+ ..+.+||+... .. ..+...... ......+.+ ++.+
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W-~~~~~~p~~-r~~~~~~~~--~~~i 218 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN----EW-RMITAMNTI-RSGAGVCVL--HNCI 218 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT----EE-EECCCCSSC-CBSCEEEEE--TTEE
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC----eE-eeCCCCCCc-cccceEEEE--CCEE
Confidence 2221 1111111112222 55666666654 35788887532 11 111111100 011112222 5677
Q ss_pred EEEeeCC-----CeEEEEeCCCceeeE--EecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 291 VTAGSSD-----RMVYIWDTTSRRILY--KLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 291 l~sgs~d-----g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
++.|+.+ ..+.+||+.+.+-.. .++.....- .++ .-++++++.+|.++
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDG 273 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCS
T ss_pred EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEE-EECCEEEEEcCcCC
Confidence 7777654 569999988764322 122111111 122 23567888887653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=1.7 Score=34.42 Aligned_cols=146 Identities=8% Similarity=-0.019 Sum_probs=75.7
Q ss_pred ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCc--------eEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 019006 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ--------ITAVSFSDASDKIYTGGIDNDVKVWDLRK 215 (347)
Q Consensus 144 ~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 215 (347)
.+..+++++++ .+.+. .+|.+.-.+..+.....-+..... ..++.|++++.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 44577888844 44444 667666555543221111111112 377889998877666 669998887543
Q ss_pred CceE------EEe-cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEEC
Q 019006 216 GEVS------MTL-QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWS 285 (347)
Q Consensus 216 ~~~~------~~~-~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s 285 (347)
.... ..+ ..--..+..|.|.|+|...+.. |+.+.- ...+....... ...+. .. . -....-+.|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr-~~~P~~~~~~wl~~~~~~g-~~-g-~~~yr~l~f~ 190 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK-ALPPVSNQDNWLARATKIG-QG-G-WDTFKFLFFS 190 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE-ECCCSSTTCCHHHHCEEEE-SS-S-GGGEEEEEEC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe-cCCCCCCCcccccccceec-cC-C-cceEEEEEEC
Confidence 2111 111 1112357899999999977776 666433 22221111110 11111 00 0 1233445688
Q ss_pred CCCCEEEEeeCCCeEEE
Q 019006 286 PDGSKVTAGSSDRMVYI 302 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~v 302 (347)
++|.+.++. +|.++-
T Consensus 191 ~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp TTSCEEEEE--TTEEEE
T ss_pred CCCcEEEEe--CCeEEe
Confidence 888777666 664443
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=2.3 Score=35.88 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCCCEEEEecCCCeEEEEECCCCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE---eCCCC------C
Q 019006 110 TDGSQIISASPDKTLRAWDVETGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW---DMRQR------G 176 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw---d~~~~------~ 176 (347)
|+...+++.+.+|.|+--.+...+ ....+... ..+..+...... ..++..+..|.+.-+ +++.. .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~-d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTK-DVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCC-CEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 455678888899988876543211 11112222 222222222222 234455666775544 33321 1
Q ss_pred cee---ecCCCCceEEE-EEcC--CCCeEEEEecCCcEEEEeCC--------CCceEEEecCCCCceeEEEECCCCCEEE
Q 019006 177 AIQ---TFPDKYQITAV-SFSD--ASDKIYTGGIDNDVKVWDLR--------KGEVSMTLQGHQDMITGMSLSPDGSYLL 242 (347)
Q Consensus 177 ~~~---~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~iwd~~--------~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 242 (347)
++. .+.....|..+ ...+ ++.+++..+.+|.++.-.+. .+.....+... +.+..+........++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 12233345544 3432 25678899999999988763 12222233332 4555555544556788
Q ss_pred EEcCCCcEEEEeCCCCCCcCc---eeEEEeccccccccceEEEEECCCCC-EEEEeeCCCeEEEEeCCC
Q 019006 243 TNGMDCKLCIWDMRPYAPQNR---CVKILEGHQHNFEKNLLKCGWSPDGS-KVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 243 t~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sgs~dg~i~vwd~~~ 307 (347)
..+.+|.+..++.....+.++ -++.++- .-.+.+..+..-+++. .|+..+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L---~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNL---KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCC---CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEe---CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 888899888887754332222 1222211 1123455554334444 788889999988877644
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.05 E-value=2.4 Score=35.83 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=96.1
Q ss_pred CCEEEEEcCCCceEEEeCCCC-----Cce--eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCC--C---------C
Q 019006 155 PPLVVSGSDDGTAKLWDMRQR-----GAI--QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR--K---------G 216 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~-----~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~---------~ 216 (347)
...++..+.+|.++--.+..- .-+ ..+.....+..+........++..+..|.+..+... . |
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC
Confidence 457888999999998765421 111 123334455555554556778888999998887665 2 1
Q ss_pred ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCc---eeEEEeccccccccceEEEEECCCCCEEEE
Q 019006 217 EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNR---CVKILEGHQHNFEKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 217 ~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 293 (347)
.....+.. .+.|.++..-+.+.+++..+..|.++.-.+..+....+ -+..++-.. -.+.+..+....+...++.
T Consensus 189 v~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~--~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 189 VQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR--RRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp EESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT--TTCSEEEEEEECTTCEEEE
T ss_pred eeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC--CCCeEEEEEEeCCCccEEE
Confidence 11122322 34577766666677899999999999888765543322 111121110 0123444443344566777
Q ss_pred eeCCCeEEEEeCCCcee---------eEEecCCccCeeeEEEcCC-CCEEEEecCCC
Q 019006 294 GSSDRMVYIWDTTSRRI---------LYKLPGHTGSVNESVFHAT-EPVIGSCSSDK 340 (347)
Q Consensus 294 gs~dg~i~vwd~~~~~~---------~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~ 340 (347)
.+.+|.+..++...-.. +.++.. ...|..++..+. ...+.+.+.+|
T Consensus 266 ~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~-~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 266 VTSGGGVIRTAARQVRKAGRQTKGVRLMNLGE-GDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEGGGCEEEEEGGGSCBCCTTSCCEECTTCCT-TCCEEEEEECC-------------
T ss_pred EcCCCeEEEEehhhccccCCCCCCeEeEecCC-CCEEEEEEEcCCCcceEEEEecCC
Confidence 78888888886543221 112221 345555555443 34455565554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.52 E-value=1.3 Score=45.12 Aligned_cols=175 Identities=10% Similarity=0.143 Sum_probs=96.5
Q ss_pred CcEEEEeccCCCeeeEEEeCc----ccceeEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 79 RDIFLWHVHGDCKNFMVLKGH----KNAILDLHWTTDGSQIISAS-------PDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
..|+-|++.++..+...+..| ...|..-.-+++.+.++..| -.|.+.+|.++.+. .+.+.+|......
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 203 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhe
Confidence 468999997655554444444 34677777788888766443 34788898876542 2233344322111
Q ss_pred eec--CCCCCCEEEEEcC---CCceEEEeCCCC----Ccee------ecCC---CCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 148 CCP--SRRGPPLVVSGSD---DGTAKLWDMRQR----GAIQ------TFPD---KYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 148 ~~~--~~~~~~~~~s~~~---d~~i~iwd~~~~----~~~~------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
... .+....+++.+.. .+++.+.++... .... .++. ..-..++..++..+.++.-+.-|.|.
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~ 283 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 283 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEE
Confidence 111 1111223333322 268888887532 1110 1121 11234567777788889999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEe
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd 254 (347)
+||+.++.++..-+-..+.|...+-+....-++.....|.|.--.
T Consensus 284 ~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~ 328 (1630)
T 1xi4_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (1630)
T ss_pred EEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence 999999987765443344444444333333344444555554433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.27 E-value=3.1 Score=34.55 Aligned_cols=184 Identities=13% Similarity=0.159 Sum_probs=86.5
Q ss_pred CCCEEEEecC----C-----CeEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCC-----CceEEEeCCC
Q 019006 111 DGSQIISASP----D-----KTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDD-----GTAKLWDMRQ 174 (347)
Q Consensus 111 ~~~~l~s~~~----d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~ 174 (347)
++..++.|+. + ..+.+||..+.+-.. .+....... .++.. +..+++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 4566666665 2 357888887654221 111111111 11111 23466666533 3577888876
Q ss_pred CCceee--cCCC-CceEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEE
Q 019006 175 RGAIQT--FPDK-YQITAVSFSDASDKIYTGGID-----NDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTN 244 (347)
Q Consensus 175 ~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~ 244 (347)
..-... ++.. .....+.+ ++..++.|+.+ ..+.+||+.+.+-... +..... -.+++.. ++..++.|
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~-~~~iyv~G 222 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVL-HNCIYAAG 222 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEE-TTEEEEEC
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cceEEEE-CCEEEEEe
Confidence 542221 2221 12222333 45566666654 4588999876642211 111111 1122222 56666667
Q ss_pred cCC-----CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCce
Q 019006 245 GMD-----CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRR 309 (347)
Q Consensus 245 ~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~ 309 (347)
|.+ ..+.+||+... .. ..+..... ...-..++. -++++++.|+.+ ..+.+||..+.+
T Consensus 223 G~~~~~~~~~v~~yd~~~~----~W-~~~~~~p~--~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETE----TW-TFVAPMKH--RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBCSSSBCCCEEEEETTTT----EE-EECCCCSS--CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCCccceEEEEeCCCC----cE-EECCCCCC--CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 654 46888887632 11 11111110 111111111 256777777643 457888887654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=3.3 Score=34.72 Aligned_cols=192 Identities=10% Similarity=0.078 Sum_probs=105.1
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceee---------eeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC---CCC--
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIK---------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---RQR-- 175 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~---~~~-- 175 (347)
++...+++.+.+|.|+--.+...+... .+... ..+..+...... ..++..+..|.++-+.. +..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCc
Confidence 355678888999999887664432111 11222 222222222222 34555677787666543 221
Q ss_pred ----Cce---eecCCCCceEEEEEcC---CCCeEEEEecCCcEEEEeCC-------CCceEEEecCCCCceeEEEECCCC
Q 019006 176 ----GAI---QTFPDKYQITAVSFSD---ASDKIYTGGIDNDVKVWDLR-------KGEVSMTLQGHQDMITGMSLSPDG 238 (347)
Q Consensus 176 ----~~~---~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~v~~~~~~ 238 (347)
..+ -.+.....+..+..-+ +..+++..+..|.++.-.+. .|.....+.. .+.+..+.....+
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 111 1122333454443322 45678889999999888763 2223333443 3455555554556
Q ss_pred CEEEEEcCCCcEEEEeCCCCCCcCc---eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 239 SYLLTNGMDCKLCIWDMRPYAPQNR---CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 239 ~~l~t~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
..++..+.+|.+..+.........+ -++.++- .-.+.+..+..-.++..|++.+..|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L---~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL---KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC---CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe---CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6788888899998888765332222 1222211 1124455655555667788999999999998743
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.13 E-value=3.3 Score=34.51 Aligned_cols=201 Identities=14% Similarity=0.093 Sum_probs=89.8
Q ss_pred eEEEEECCCCceeee-eec-cCcceeEeecCCCCCCEEEEEcC----CC-------ceEEEeCCCCCcee--ecCCC-Cc
Q 019006 123 TLRAWDVETGKQIKK-MAE-HNSFVNSCCPSRRGPPLVVSGSD----DG-------TAKLWDMRQRGAIQ--TFPDK-YQ 186 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~s~~~----d~-------~i~iwd~~~~~~~~--~~~~~-~~ 186 (347)
.+..||..+.+-... +.. ....-.+++ ..+..+++.|+. ++ .+..||..+..-.. .++.. ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV--TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE--CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE--EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 378888877654321 111 111111222 223457777773 12 16678876654322 12221 11
Q ss_pred eEEEEEcCCCCeEEEEecC-------CcEEEEeCCCCceEEE--ecCCCCceeEEEECCCCCEEEEEcC------CCcEE
Q 019006 187 ITAVSFSDASDKIYTGGID-------NDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPDGSYLLTNGM------DCKLC 251 (347)
Q Consensus 187 v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~~~~l~t~~~------d~~i~ 251 (347)
...+.+ ++..++.|+.+ ..+.+||+.+.+-... +..... -.+++. .++..++.||. -..+.
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-GHNVIS-HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-SCEEEE-ETTEEEEECCEESSSCBCCCEE
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-ccEEEE-ECCEEEEEcCCCCCCCccceEE
Confidence 222222 45566666653 2478889876642221 111000 012222 35566666653 23588
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----CeEEEEeCCCceee--EEecCCccCeeeE
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----RMVYIWDTTSRRIL--YKLPGHTGSVNES 324 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----g~i~vwd~~~~~~~--~~~~~h~~~v~~~ 324 (347)
+||.... .. ..+..... ......++. -+++.++.|+.+ ..+.+||..+.+-. ..++..... ..
T Consensus 179 ~yd~~~~----~W-~~~~~~p~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~ 248 (318)
T 2woz_A 179 IYNPKKG----DW-KDLAPMKT--PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS--IS 248 (318)
T ss_dssp EEETTTT----EE-EEECCCSS--CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS--CE
T ss_pred EEcCCCC----EE-EECCCCCC--CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc--eE
Confidence 8887632 11 11111111 111111111 256777777643 35778898776432 122211111 11
Q ss_pred EEcCCCCEEEEecCC
Q 019006 325 VFHATEPVIGSCSSD 339 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D 339 (347)
+...++++++.+|.+
T Consensus 249 ~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 249 LVSLAGSLYAIGGFA 263 (318)
T ss_dssp EEEETTEEEEECCBC
T ss_pred EEEECCEEEEECCee
Confidence 222356777777764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.47 Score=40.41 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=69.1
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEEecCC-CCceeEEEE--CCCCCEEEEE--cCCCcEEEEeCCCCCCcCceeEEEec
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMTLQGH-QDMITGMSL--SPDGSYLLTN--GMDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~v~~--~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
+..++.++.||.|+-+|..+|+...+++.. ..++....- .+.+..++.+ ..||.|..+|.... .....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G----~~~~~~~~ 85 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG----LQKLPLSI 85 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE----EEEEEEEH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC----cEEeeecc
Confidence 357889999999999999999988887653 112211110 0112233333 57999999987542 11111110
Q ss_pred cccccccceEE---EEE-C----CCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 271 HQHNFEKNLLK---CGW-S----PDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 271 ~~~~~~~~~~~---~~~-s----~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
.......++.. ... . ..+..+++|+.+|.++..|+.+|++++++..
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 00000001110 000 0 1466889999999999999999999998763
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.69 E-value=3.8 Score=34.11 Aligned_cols=142 Identities=13% Similarity=0.226 Sum_probs=65.6
Q ss_pred cCCCCEEEEecC----CC-------eEEEEECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCC-------CceE
Q 019006 109 TTDGSQIISASP----DK-------TLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDD-------GTAK 168 (347)
Q Consensus 109 ~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------~~i~ 168 (347)
..++..++.|+. ++ .+.+||..+.+-.. .+.... .-..++.. +..+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR-CLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB-CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc-cccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 446677777773 12 16678877654321 111111 11111111 23466666643 2467
Q ss_pred EEeCCCCCceee--cCCC-CceEEEEEcCCCCeEEEEec------CCcEEEEeCCCCceEEE--ecCCCCceeEEEECCC
Q 019006 169 LWDMRQRGAIQT--FPDK-YQITAVSFSDASDKIYTGGI------DNDVKVWDLRKGEVSMT--LQGHQDMITGMSLSPD 237 (347)
Q Consensus 169 iwd~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~~~ 237 (347)
+||..+..-... ++.. .....+. .++..++.|+. ...+.+||+.+.+-... +.... .-.+++. -+
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~-~~ 206 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAI-HK 206 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEE-ET
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEEE-EC
Confidence 788876543222 2221 1112222 24555566653 24589999887642221 11111 1112222 24
Q ss_pred CCEEEEEcCC-----CcEEEEeCCC
Q 019006 238 GSYLLTNGMD-----CKLCIWDMRP 257 (347)
Q Consensus 238 ~~~l~t~~~d-----~~i~~wd~~~ 257 (347)
++.++.||.+ ..+.+||+..
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CEEEEEcCcCCCCccceEEEEECCC
Confidence 5666666643 2466788753
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.37 E-value=4 Score=33.54 Aligned_cols=147 Identities=11% Similarity=0.133 Sum_probs=87.7
Q ss_pred CCEEEEEcCCCceEEEeCCCCC----ce--eecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC---------CceE
Q 019006 155 PPLVVSGSDDGTAKLWDMRQRG----AI--QTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK---------GEVS 219 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~~----~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~ 219 (347)
...++..+.+|.++-..+..-. -. ..+.....+..+........++..+.+|.++.+.... |...
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 3577888999999988754321 11 1233344566555555666888899999988886421 2222
Q ss_pred EEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCce---eEEEeccccccccceEEEEECCCCCEEEEeeC
Q 019006 220 MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC---VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 220 ~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
..+.. .+.|..+...+++.+++..+..|.++...+..+....+- +..+.. .+.+..+....+...++..+.
T Consensus 160 i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~-----~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 160 IKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGT-----KDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCS-----SSCEEEEEEESSEEEEEEEET
T ss_pred EccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcC-----CCcEEEEEEeCCCCEEEEEcC
Confidence 23332 245666655556678889999999999987665433321 222211 123444333334456777778
Q ss_pred CCeEEE--EeCCC
Q 019006 297 DRMVYI--WDTTS 307 (347)
Q Consensus 297 dg~i~v--wd~~~ 307 (347)
+|.+.. ++...
T Consensus 234 ~G~~ir~~~~~~~ 246 (276)
T 3no0_A 234 NGKAFYDKINQKD 246 (276)
T ss_dssp TSCEEEEEEEGGG
T ss_pred CCeEEEeeeCHHH
Confidence 888877 87543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=7.6 Score=36.66 Aligned_cols=187 Identities=12% Similarity=0.173 Sum_probs=92.6
Q ss_pred CCCCeEEEeeCC----CcEEEEeccCCCeeeEEEe-C------c-ccceeEEEEcC-CCCEEEEecCCC------eEEEE
Q 019006 67 PAGTVIASGSHD----RDIFLWHVHGDCKNFMVLK-G------H-KNAILDLHWTT-DGSQIISASPDK------TLRAW 127 (347)
Q Consensus 67 ~~~~~l~s~~~d----~~v~~w~~~~~~~~~~~~~-~------h-~~~v~~~~~~~-~~~~l~s~~~dg------~i~iw 127 (347)
.++.+++.||.+ ..+.+||..... ...+. . . ...-.+++... ++..++.||.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456777778754 457788875331 22222 0 1 11112333333 666777776543 47788
Q ss_pred ECCCCceee--eeeccCcceeEeecCCCCCCEEEEEcCCC--ceEEEeCCCCCceee-----cC-CCCceEEEEEcCC-C
Q 019006 128 DVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDG--TAKLWDMRQRGAIQT-----FP-DKYQITAVSFSDA-S 196 (347)
Q Consensus 128 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~-----~~-~~~~v~~~~~~~~-~ 196 (347)
|..+.+-.. .+.. ...-..++... ++.+++.|+.++ .+.+||..+..-... .+ ......++.+... +
T Consensus 474 d~~t~~W~~~~~~p~-~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 474 DMKTREWSMIKSLSH-TRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp ETTTTEEEECCCCSB-CCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred eCCCCcEEECCCCCC-CcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 887754221 1111 11111222211 346777777554 688899876543221 11 1122333555544 4
Q ss_pred CeEEEEec--C-----CcEEEEeCCCCce-----EEEecC---CCCceeEEEECCCCCEEEEEcC--------CCcEEEE
Q 019006 197 DKIYTGGI--D-----NDVKVWDLRKGEV-----SMTLQG---HQDMITGMSLSPDGSYLLTNGM--------DCKLCIW 253 (347)
Q Consensus 197 ~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~---~~~~i~~v~~~~~~~~l~t~~~--------d~~i~~w 253 (347)
..++.|+. + +.+..||+.+..- -..+.. ....-.+++...++..++.||. ...+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 56666765 2 3588999887651 111111 1111122333333666677764 2458888
Q ss_pred eCCC
Q 019006 254 DMRP 257 (347)
Q Consensus 254 d~~~ 257 (347)
|+..
T Consensus 632 d~~t 635 (695)
T 2zwa_A 632 DPLS 635 (695)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8763
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=7.8 Score=36.59 Aligned_cols=199 Identities=11% Similarity=0.131 Sum_probs=94.1
Q ss_pred CCCCEEEEecCC----CeEEEEECCCCceeeee-e------ccCcceeEeecCCCCCCEEEEEcCC------CceEEEeC
Q 019006 110 TDGSQIISASPD----KTLRAWDVETGKQIKKM-A------EHNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDM 172 (347)
Q Consensus 110 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~ 172 (347)
.++..++.||.+ ..+.+||..+.+-...- . .....-.+++....++.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345566666643 35777887765432211 1 1111111222221033466666643 34778888
Q ss_pred CCCCcee--ecCCCCceEEEEEcCCCCeEEEEecCC--cEEEEeCCCCceEEE-----ecCCCCceeEEEECCC-CCEEE
Q 019006 173 RQRGAIQ--TFPDKYQITAVSFSDASDKIYTGGIDN--DVKVWDLRKGEVSMT-----LQGHQDMITGMSLSPD-GSYLL 242 (347)
Q Consensus 173 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~-----~~~~~~~i~~v~~~~~-~~~l~ 242 (347)
.+..-.. .++..-.-.+++.-.++..++.|+.++ .+.+||..+..-... +......-..+.+..+ +..++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 7643222 122211112222223667777777654 699999887642211 1111111233555554 55666
Q ss_pred EEcC--C-----CcEEEEeCCCCCC--cCceeEEEeccccccccceEEEEECCCCCEEEEeeC--------CCeEEEEeC
Q 019006 243 TNGM--D-----CKLCIWDMRPYAP--QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS--------DRMVYIWDT 305 (347)
Q Consensus 243 t~~~--d-----~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~--------dg~i~vwd~ 305 (347)
.||. + +.+..||+....- .... ..+.... .....-..+....++.+++.|+. ...+.+||.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W-~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITV-IKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEE-EEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEE-EEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 6665 2 3588888875321 0001 1111110 01111112222333677777774 346999999
Q ss_pred CCcee
Q 019006 306 TSRRI 310 (347)
Q Consensus 306 ~~~~~ 310 (347)
.+.+-
T Consensus 634 ~t~~W 638 (695)
T 2zwa_A 634 LSETL 638 (695)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 87654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.83 E-value=9 Score=36.44 Aligned_cols=226 Identities=9% Similarity=0.117 Sum_probs=118.6
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEE-EeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV-LKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 136 (347)
..|.++....+|. |..|..+| +..||.... .+.. .......|.++.. .++ .|..+..+ -+..+|..+++. .
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~--~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~ 134 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRAD--RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-T 134 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTT--EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-E
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCC--EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-E
Confidence 4588877766664 44555555 678886432 1111 0111234666654 344 45555555 577788766543 2
Q ss_pred eeec-----cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCC-----CCceEEEEEcCCCCeEEEEecC
Q 019006 137 KMAE-----HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPD-----KYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 137 ~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.+.. ....+.++.....+ . +..|+.+| +..+|..++..... .+. ...|.++..++++..+..|+.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTC-C-EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 2211 12334444444333 3 34455544 66777765432211 111 124778877777777777775
Q ss_pred CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc----cccccceEE
Q 019006 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ----HNFEKNLLK 281 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 281 (347)
+-+..+|..+++...........|.++....+|...+.. . +.+.++|..... ...+.... .-....|.+
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~-----~~~~~~~~~~~~~l~~~~i~~ 283 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTP-----LQHIIHDSRNIQSLTNNIIWN 283 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSC-----CEEECCCTTCTTSCSCSCEEE
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCc-----EEEEEcCCCCcCcCCcCeEEE
Confidence 458889987664322111123458888888777765544 3 457788765321 11111100 011235777
Q ss_pred EEECCCCCEEEEeeCCCeEEEEe
Q 019006 282 CGWSPDGSKVTAGSSDRMVYIWD 304 (347)
Q Consensus 282 ~~~s~~g~~l~sgs~dg~i~vwd 304 (347)
+....+|.+.+ |+..| +.++.
T Consensus 284 i~~D~~g~lWi-GT~~G-l~~~~ 304 (758)
T 3ott_A 284 IFADQEHNIWL-GTDYG-ISLSR 304 (758)
T ss_dssp EEECTTCCEEE-EESSS-EEEEC
T ss_pred EEEcCCCCEEE-EeCCc-ccccc
Confidence 77777776554 44456 55443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.75 E-value=9.2 Score=36.38 Aligned_cols=261 Identities=10% Similarity=0.064 Sum_probs=134.2
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe--Cc----ccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK--GH----KNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~--~h----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..|.++....+|.+.+ |..+| +..++.... .+..+. .. ...|.++...+++..|..|.. +-+..+|..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG--KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTT--EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC--ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 4577887777777655 34444 666765432 122221 11 124788887777665444443 4577788776
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--------CCCceEEEEEcCCCCeEEEEe
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP--------DKYQITAVSFSDASDKIYTGG 203 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~ 203 (347)
++...........+.++.....+ . +..|+.+ -+.+++..++....... ....|.++..+.++ .+..|+
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g-~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWiGT 296 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNG-D-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH-NIWLGT 296 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTC-C-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC-CEEEEE
T ss_pred CeEEeccCCCCCeEEEEEEcCCC-C-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC-CEEEEe
Confidence 54322111122345555544443 3 4445544 47778876544322111 12347888777655 466777
Q ss_pred cCCcEEEEeCCCCceEEEec-----CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc---cccc
Q 019006 204 IDNDVKVWDLRKGEVSMTLQ-----GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH---QHNF 275 (347)
Q Consensus 204 ~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~ 275 (347)
..| +.++.....-...... .....|.++.-..+|+.-+.. .+| +..++...... .....+... ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~G-l~~~~~~~~~~--~~~~~~~~~~~~~~l~ 371 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-ANG-LIRFTDPAGER--HDAIWYRMGDKTYPLS 371 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TTE-EEEESCTTSSC--CCCEEECTTCSSSCCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CCc-ceeeccccccc--ceeEEeccCCcCCCCC
Confidence 666 5555332111111110 112458888888777755543 444 66666442110 011111100 0011
Q ss_pred ccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEE-ecC-----CccCeeeEEEcCCCCEEE
Q 019006 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYK-LPG-----HTGSVNESVFHATEPVIG 334 (347)
Q Consensus 276 ~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~-~~~-----h~~~v~~~~~~~~~~~l~ 334 (347)
...|.++.-..+|.+.+ |+ ++-|..||..+++.... ... ....|.++...+++.+-+
T Consensus 372 ~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi 434 (758)
T 3ott_A 372 HNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI 434 (758)
T ss_dssp CSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE
T ss_pred CCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE
Confidence 23577777777787655 44 35699999887765422 111 123577777777766544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.41 E-value=5.2 Score=32.90 Aligned_cols=217 Identities=11% Similarity=0.082 Sum_probs=103.3
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT- 180 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~- 180 (347)
.|..++-... +.+.-. ||.+..|-....-++..-......+..++.... ..++. . ||.+..|-......+..
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 5666665433 222224 899999975542221110011123333433222 22333 4 89999997543222111
Q ss_pred cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCC-CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCC
Q 019006 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK-GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~ 259 (347)
......|..++... .+.+.-. +|.|+.|-... ++.-.... ....|..++...+- .++ -. ||.+..|-.....
T Consensus 98 ~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~-~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAE-AQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGG-GGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCcc-CCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCC
Confidence 11123566666543 3444445 99999996543 22211111 12346666654332 222 23 7899999765432
Q ss_pred CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCC
Q 019006 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSD 339 (347)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 339 (347)
..... ......+..++...+.. ++. .||.|+.|-....-.+..-..-...|..++-...- .++-. |
T Consensus 171 qlg~p--------~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~ 236 (282)
T 3qhy_B 171 QTTVP--------AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--N 236 (282)
T ss_dssp TTSCC--------GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--T
T ss_pred CCCCc--------eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--C
Confidence 22111 11123455655444332 333 48999999654321111000112346666554443 33333 8
Q ss_pred CcEEeec
Q 019006 340 KQIYLGE 346 (347)
Q Consensus 340 ~~i~i~~ 346 (347)
|+|+.|-
T Consensus 237 g~v~~wG 243 (282)
T 3qhy_B 237 GKVIAWG 243 (282)
T ss_dssp TEEEEES
T ss_pred CEEEEec
Confidence 8888874
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.35 E-value=7.4 Score=34.55 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=38.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEecc-CCCeeeEEEeC------cccceeEEEEcCC---CCEEEEe
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKG------HKNAILDLHWTTD---GSQIISA 118 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~------h~~~v~~~~~~~~---~~~l~s~ 118 (347)
-...+.|+|.|+|+++++-...+.|++++.. +....+..+.. .......|+|+|+ +..|+.+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 4467899999999988765544578888653 22222222221 2346779999995 5555444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.40 E-value=6.5 Score=35.04 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=61.6
Q ss_pred ceeEEEECCCCC-EEEEEcCCCcEEEEeCCCCCCcCceeEEEecccc-----ccccceEEEEECCC----CCEEEEeeC-
Q 019006 228 MITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH-----NFEKNLLKCGWSPD----GSKVTAGSS- 296 (347)
Q Consensus 228 ~i~~v~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~----g~~l~sgs~- 296 (347)
..+.|+|.|++. .|+.+...|.|++++..... ....+..+..... ....-+..++|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 357899999985 45556778999999743210 1111111111000 11345788999996 333333221
Q ss_pred -C----------CeEEEEeCCC----------ceeeEEec--CCccCeeeEEEcCCCCEEEEecCCC
Q 019006 297 -D----------RMVYIWDTTS----------RRILYKLP--GHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 297 -d----------g~i~vwd~~~----------~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
+ ..|.-|.+.. .+.+..+. ...-.-..++|.|++.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1454455431 23444433 1112357899999999988887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.88 Score=41.32 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=50.2
Q ss_pred eeEEEECCCCCEEEEEcC-CCcEEEEeCCCCC---------CcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCC
Q 019006 229 ITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYA---------PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDR 298 (347)
Q Consensus 229 i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg 298 (347)
...+.++|||++++.++. +.++.++|++... +........+ .--..+-.+|.++|.-..+---|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-----~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-----LGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-----CCSCEEEEEECSSSEEEEEETTTT
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-----CCCcccEEEECCCCceEeeeeecc
Confidence 467889999999988774 6799999987421 1111111111 112356788999995555666899
Q ss_pred eEEEEeCCCc
Q 019006 299 MVYIWDTTSR 308 (347)
Q Consensus 299 ~i~vwd~~~~ 308 (347)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999998653
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.71 E-value=10 Score=32.03 Aligned_cols=156 Identities=9% Similarity=0.037 Sum_probs=87.1
Q ss_pred cceeEEEEcC---CCCEEEEecCCCeEEEEECCCCce-------eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 101 NAILDLHWTT---DGSQIISASPDKTLRAWDVETGKQ-------IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 101 ~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
..|.++...+ +..+++.++.+|.++.-.+..... .-.+.. ...+..+...... ..++..+..|.+..+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~-d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG-DDLLLVSANGQSIRF 172 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT-CEEEEEETTSEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC-CEEEEEECCCeEEEE
Confidence 4565554333 567999999999999987654221 112222 2333333322233 346667788888777
Q ss_pred eCC--CCC---------ceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCC-------ceE--EEecCCCCcee
Q 019006 171 DMR--QRG---------AIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG-------EVS--MTLQGHQDMIT 230 (347)
Q Consensus 171 d~~--~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~i~ 230 (347)
... .-. ....+.....|.++..-+.+..++..+..|.++.-.+... +-. ..+..-.+.+.
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 655 211 1112333456776666666678999999999888765321 112 22222123344
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEeCCCC
Q 019006 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 231 ~v~~~~~~~~l~t~~~d~~i~~wd~~~~ 258 (347)
.+....+...++..+.+|.+..++....
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 4443334456666677777777766543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=84.06 E-value=17 Score=30.15 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=89.2
Q ss_pred ECCCCCeEEEeeCC--------------CcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----CCCeEEE
Q 019006 65 FNPAGTVIASGSHD--------------RDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----PDKTLRA 126 (347)
Q Consensus 65 ~~~~~~~l~s~~~d--------------~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~dg~i~i 126 (347)
++++|..|.-.... ..|+..++.+... ..+... ....|++++++|+-.. .+..|..
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeecC----CccEEEEeCCEEEEEeecCCCCceEEE
Confidence 46777766554432 3466666654422 222221 1235777888888665 3345555
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID- 205 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 205 (347)
.+++. .....+..+.. ..+.+.+..+..+.....+|...++..+.....+.. ... ..+.|+++.|+-....
T Consensus 134 ~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 134 IRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEEETTEEEEEEGGG
T ss_pred EECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeeecCCEEEEEEcCC
Confidence 56653 33334433322 122344455555554467777777765443333332 122 2355888887765433
Q ss_pred -CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCC
Q 019006 206 -NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMR 256 (347)
Q Consensus 206 -g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~ 256 (347)
..|..-++.... ...+.. ..+ ..|+|++.+|.-+. ..+.|..-++.
T Consensus 206 ~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 206 DNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp TTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred CcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 357666776544 233321 223 34777888777542 23455555543
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.79 E-value=17 Score=29.79 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=71.9
Q ss_pred CCceEEEEEcC-CCCeEEEEecCCcEEEEeCCC------CceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 184 KYQITAVSFSD-ASDKIYTGGIDNDVKVWDLRK------GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 184 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
...+..+.... +...++..+.+|.++-..+.. +.....+.. .+.+..+....+...++..+..|.+..++..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 34454443321 456888999999999887543 222233333 3456666666566688888889998888765
Q ss_pred CCCCcCc---eeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 257 PYAPQNR---CVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 257 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
......+ -+..++ ..-.+.+..+...+++..|+..+..|.++...+..
T Consensus 146 eip~~gR~a~Gv~~i~---L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 146 EVPPSTPGARGVQGIK---LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GSCBCCTTCCCEECCC---CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hCCCcCCCCCCEEEEc---cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 4322211 111111 11124455554445677899999999999887643
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.48 E-value=25 Score=30.19 Aligned_cols=137 Identities=10% Similarity=0.015 Sum_probs=63.5
Q ss_pred ceEEEEEcCC-CCeEEEEecCCcEEEEeCCCCceEEEecC--CC---CceeEEEECCC-CCEEEEEcC-----------C
Q 019006 186 QITAVSFSDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQG--HQ---DMITGMSLSPD-GSYLLTNGM-----------D 247 (347)
Q Consensus 186 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~---~~i~~v~~~~~-~~~l~t~~~-----------d 247 (347)
.+.++.++|. ...++++...+ |+..+- .++.-..+.. .. ..+..+.++|. ...+..+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4788899886 35677766544 544432 2332222211 11 23567888763 333444321 2
Q ss_pred CcEEEEeCCCCCCcCceeEEEecccc--cccc-ceEEEEECCC-CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeee
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQH--NFEK-NLLKCGWSPD-GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNE 323 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~s~~-g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 323 (347)
+...+|...+...... ....+... .+.. ....++++|. ...|+.++.++.|+.-+ +.++.-..+..+-..+.+
T Consensus 311 ~~~~~~~S~DgG~tW~--~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~ 387 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQ--RQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYA 387 (394)
T ss_dssp SSCCEEEESSTTSCCE--EECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEE
T ss_pred CceeEEEECCCCCCce--ECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeE
Confidence 3345565443221111 11111110 0000 0124567774 34566676666665442 334434444444456777
Q ss_pred EEEc
Q 019006 324 SVFH 327 (347)
Q Consensus 324 ~~~~ 327 (347)
++|.
T Consensus 388 v~~~ 391 (394)
T 3b7f_A 388 VQSA 391 (394)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 347 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-38 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-28 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-22 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-36 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-33 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-24 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-25 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-20 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-19 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-19 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-18 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-17 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-15 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-14 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-14 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-13 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-13 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-13 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-11 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-10 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-09 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 2e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-04 | |
| d1k32a2 | 281 | b.68.7.1 (A:39-319) Tricorn protease N-terminal do | 3e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 137 bits (346), Expect = 2e-38
Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 10/295 (3%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH + +Y M + ++ S S D + +W + + + ++ + G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNS---FVNSCCPSRRGPPLVVSGSDDGTAKL 169
+ + D ++++T + +++ + SCC +V S D A
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
+ + ++S + + +G D K+WD+R+G T GH+ I
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289
+ P+G+ T D ++D+R N + +S G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSKSGR 283
Query: 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ AG D +WD L GH V+ + + S D + +
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 110 bits (275), Expect = 3e-28
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
Query: 84 WHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS 143
+ GH ++ L D +S + D + + WDV G + H S
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY---QITAVSFSDASDKIY 200
+N+ C G +GSDD T +L+D+R + T+ IT+VSFS + +
Sbjct: 228 DINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254
G D + VWD K + + L GH + ++ + ++ DG + T D L IW+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 94.4 bits (233), Expect = 2e-22
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFL-WHVHGDCKNFMVLKGHKNAILDL 106
TGH+S + + F P G A+GS D L I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
++ G +++ D WD + +A H++ V+ + G V +GS D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSF 335
Query: 167 AKLWD 171
K+W+
Sbjct: 336 LKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (154), Expect = 5e-12
Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 7/213 (3%)
Query: 133 KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-KYQITAVS 191
+ + + H + + + L+VS S DG +WD + P + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 192 FSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251
++ + + + GG+DN +++L+ E ++ + TG
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
+ + +++ +PD +G+ D +WD
Sbjct: 165 TCALWDIETGQQTT-----TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GH +N F + S D L
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 131 bits (328), Expect = 4e-36
Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 31/313 (9%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L+GH+S V + F+P +V+ S S D I +W LKGH +++ D+ + G
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSG 71
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ S S D T++ WD + + I+ M H+ V+S G + VS S D T K+W++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEV 130
Query: 173 RQRGAIQTFPD-KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
+ ++TF + + V + I + D V+VW + E L+ H+ ++
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190
Query: 232 MSL--------------------SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
+S G +LL+ D + +WD+ C+ L GH
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTLVGH 246
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331
+ + + G + + + D+ + +WD ++R + L H V FH T P
Sbjct: 247 DN----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 332 VIGSCSSDKQIYL 344
+ + S D+ + +
Sbjct: 303 YVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 116 bits (290), Expect = 1e-30
Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 20/266 (7%)
Query: 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRG 154
L GH++ + + + S ++SAS D T++ WD ETG + + H V G
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 155 PPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLR 214
L +D + +++VS D I + D +K+W+++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH- 273
G T GH++ + + + DG+ + + D + +W + C L H+H
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHV 187
Query: 274 ---------------NFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHT 318
+ G + +GS D+ + +WD ++ L L GH
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 319 GSVNESVFHATEPVIGSCSSDKQIYL 344
V +FH+ I SC+ DK + +
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (288), Expect = 2e-30
Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 31/278 (11%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLH 107
L GH +V + F+ +G ++AS S D I + + GH + + +
Sbjct: 50 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK-LWDFQGFECIRTMHGHDHNVSSVS 108
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
+G I+SAS DKT++ W+V+TG +K H +V P++ G L+ S S+D T
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTV 167
Query: 168 KLWDMRQRGAIQTFP---------------------DKYQITAVSFSDASDKIYTGGIDN 206
++W + + + + +G D
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227
Query: 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVK 266
+K+WD+ G MTL GH + + G+ G ++L+ D L +WD + RC+K
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMK 283
Query: 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
L H+H + + V GS D+ V +W+
Sbjct: 284 TLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.4 bits (207), Expect = 4e-19
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Query: 18 SARPMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSH 77
+ R +T A + + S + T K G + SGS
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 78 DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKK 137
D+ I +W M L GH N + + + + G I+S + DKTLR WD + + +K
Sbjct: 226 DKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 284
Query: 138 MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+ H FV S + P VV+GS D T K+W+
Sbjct: 285 LNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 3e-15
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 8/161 (4%)
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246
+T V F + + D +KVWD G+ TL+GH D + +S G L +
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306
D + +WD + + P+G + + S D+ + +W+
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSS--------VSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347
+ + GH V + +I SCS+D+ + + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 124 bits (311), Expect = 4e-33
Identities = 63/338 (18%), Positives = 118/338 (34%), Gaps = 35/338 (10%)
Query: 41 QRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH------------- 87
++ + H S V +KF+ G +A+G ++ ++ V
Sbjct: 46 ALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 104
Query: 88 ----GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS 143
+ N I + ++ DG + + + D+ +R WD+E K + + H
Sbjct: 105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 164
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGG 203
+ S G LV D + ++ + T I G
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 224
Query: 204 IDNDVKVWDLRKGEVSMTLQ-------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256
+D V+VWD G + L GH+D + + + DG +++ +D + +W+++
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284
Query: 257 PYAPQNRCV----KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY 312
++ E + +L + + + +GS DR V WD S L
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344
Query: 313 KLPGHTGSV------NESVFHATEPVIGSCSSDKQIYL 344
L GH SV N S V + S D + +
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.1 bits (245), Expect = 5e-24
Identities = 57/274 (20%), Positives = 115/274 (41%), Gaps = 28/274 (10%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
+ ++ F+P G +A+G+ DR I + K M+L+GH+ I L + G
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIR-IWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+++S S D+T+R WD+ TG+ ++ + G + +GS D ++WD
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA-AGSLDRAVRVWDS 234
Query: 173 RQRGAIQTFPDKYQ--------ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV------ 218
++ + + + +V F+ + +G +D VK+W+L+
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 219 ------SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ 272
+T GH+D + ++ + + Y+L+ D + WD + + +L+GH+
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----SGNPLLMLQGHR 350
Query: 273 HNFE--KNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
++ P+ + GS D IW
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.4 bits (225), Expect = 3e-21
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 42/213 (19%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNF------MVLKGHKNAILDLHWT 109
G IA+GS DR + +W GHK+++ + +T
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
DG ++S S D++++ W+++ NS
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY------------------- 304
Query: 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI 229
K + +V+ + + I +G D V WD + G + LQGH++ +
Sbjct: 305 -----------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 230 T------GMSLSPDGSYLLTNGMDCKLCIWDMR 256
G SL P+ + T DCK IW +
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.2 bits (222), Expect = 8e-21
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 45 SLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHG-----------DCKNF 93
L+S TGH+ +VY++ F G + SGS DR + LW++
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 301
Query: 94 MVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRR 153
+ GHK+ +L + T + I+S S D+ + WD ++G + + H + V S +
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
Query: 154 GP-----PLVVSGSDDGTAKLWDMRQ 174
+ +GS D A++W ++
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 40/263 (15%)
Query: 115 IISASPDKTLRAWDVETGKQIK----KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
+ + ++ ++I K +H S V S G + +G + T +++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCNK-TTQVY 88
Query: 171 DMRQRGAIQTFPD-------------------KYQITAVSFSDASDKIYTGGIDNDVKVW 211
+ + D I +V FS + TG D +++W
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Query: 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
D+ ++ M LQGH+ I + P G L++ D + IWD+R
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208
Query: 272 QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-------GHTGSVNES 324
DG + AGS DR V +WD+ + ++ +L GH SV
Sbjct: 209 TVAV--------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260
Query: 325 VFHATEPVIGSCSSDKQIYLGEI 347
VF + S S D+ + L +
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNL 283
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 2e-25
Identities = 75/342 (21%), Positives = 117/342 (34%), Gaps = 59/342 (17%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKN 101
R L+SP +L GH V T G I SGS D + +W K L GH
Sbjct: 2 RRGELKSPKVL-KGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTG 58
Query: 102 AILDLHWTTD--------------------------------------GSQIISASPDKT 123
+ + +++S S D T
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD 183
LR WD+ETG+ + + H + V R VVSG+ D K+WD + T
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 184 KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243
D + +G +D ++VWD+ G TL GHQ + + + + L++
Sbjct: 176 HTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVS 232
Query: 244 NGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW 303
D + IWD+ + + L+ Q + + + V S D V +W
Sbjct: 233 GNADSTVKIWDI-------KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 304 DTTSRRILYKLP-----GHTGSVNESVFHATEPVIGSCSSDK 340
D + + L G G V T+ V S +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (214), Expect = 5e-20
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 19/257 (7%)
Query: 88 GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS 147
G+ K+ VLKGH + ++ G++I+S S D TL+ W TGK ++ + H V S
Sbjct: 4 GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDND 207
++ + G + T ++ +G D
Sbjct: 63 SQMR----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
++VWD+ G+ L GH + + DG +++ D + +WD C+
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETE----TCLHT 172
Query: 268 LEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327
L+GH + DG V +GS D + +WD + ++ L GH S
Sbjct: 173 LQGHTNRV------YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGME 224
Query: 328 ATEPVIGSCSSDKQIYL 344
+ ++ S ++D + +
Sbjct: 225 LKDNILVSGNADSTVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 4e-15
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLH 107
+ + L GH + VY+++F+ G + SGS D I +W V L GH++ +
Sbjct: 168 TCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVE-TGNCIHTLTGHQSLTSGME 224
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA 167
+ ++S + D T++ WD++TG+ ++ + N ++ + V++ SDDGT
Sbjct: 225 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 168 KLWDMRQRGAIQTFPDKYQ------ITAVSFSDASDKIYTGGIDND----VKVWDL 213
KLWD++ I+ + + S+ G + + V D
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 8e-09
Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 34/205 (16%)
Query: 170 WDMRQRGAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227
W + + + D + IT + F ++I +G DN +KVW G+ TL GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG---- 283
+ + + + K+ + H EK ++
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 284 ------------------------WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319
DG +V +G+ D MV +WD + L+ L GHT
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178
Query: 320 SVNESVFHATEPVIGSCSSDKQIYL 344
V F V S S D I +
Sbjct: 179 RVYSLQFDGIHVV--SGSLDTSIRV 201
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.4 bits (217), Expect = 3e-20
Identities = 37/316 (11%), Positives = 79/316 (25%), Gaps = 34/316 (10%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDG 112
+ + +N T IA ++ ++ ++ LK H + + W D
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSF-VNSCCPSRRGPPLVVSGSDDGTAKLWD 171
++I++ D+ W ++ + C GS +
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123
Query: 172 MRQRGAIQTFPDKYQ-----ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS------- 219
Q + + ++ + S + G D +++ EV
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183
Query: 220 -----------MTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268
+ G+ S +GS + D +C+ D
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243
Query: 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328
+ + S V AG ++ S G +S
Sbjct: 244 LPLLA--------VTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294
Query: 329 TEPVIGSCSSDKQIYL 344
+ DK+
Sbjct: 295 LTARERFQNLDKKASS 310
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.0 bits (172), Expect = 2e-14
Identities = 38/323 (11%), Positives = 88/323 (27%), Gaps = 37/323 (11%)
Query: 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLW-HVHGDCKNFMVLKGHKNAILDLH 107
+ L H V + + P I + DR+ ++W K +V+ A +
Sbjct: 43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN---SCCPSRRGPPLVVSGSDD 164
W + + S + + E + L+ +GS D
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162
Query: 165 GTAKLWDMRQRGAIQTFPDKYQ-------------------ITAVSFSDASDKIYTGGID 205
+++ + + + V FS ++ D
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222
Query: 206 NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265
+ V + D K TL + ++ + S + G DC ++ A +
Sbjct: 223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFG 281
Query: 266 KILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV 325
L+ + + ++ + D+ + + H SV++
Sbjct: 282 GRLDVPK--------QSSQRGLTARERFQNLDKKASSEGSAAAGA-GLDSLHKNSVSQIS 332
Query: 326 FHATEP----VIGSCSSDKQIYL 344
+ + D + +
Sbjct: 333 VLSGGKAKCSQFCTTGMDGGMSI 355
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 9e-10
Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 7/201 (3%)
Query: 24 WSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFL 83
+S + P P + + V+ + F+ G+ +A SHD + L
Sbjct: 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227
Query: 84 WHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS 143
+ +L + + T+ S + + D + ++
Sbjct: 228 ADADKKMAVATL-ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLD 285
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS----DASDKI 199
R + D A GA K ++ +S +
Sbjct: 286 VPKQS-SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344
Query: 200 YTGGIDNDVKVWDLRKGEVSM 220
T G+D + +WD+R E ++
Sbjct: 345 CTTGMDGGMSIWDVRSLESAL 365
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (211), Expect = 1e-19
Identities = 37/295 (12%), Positives = 73/295 (24%), Gaps = 16/295 (5%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMV----LKGHKNAILDLHWTT 110
H V + + + +G + +W + V N I
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170
DG +I TL WD+ K +S + V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDND-VKVWDLRKGEVSMTLQGHQDMI 229
+ + A ++D D + + I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 230 TGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289
+ P G +L + + + H E +L ++ G
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---------QLHLHESCVLSLKFAYCGK 278
Query: 290 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
+ D ++ W T +++ + SV + I + S DK+ +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 6e-18
Identities = 36/252 (14%), Positives = 85/252 (33%), Gaps = 10/252 (3%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
+ + + K P G + G + +W + +
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
S++ + A + + + + ++ SC + +G D T + WD+
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
R+ +Q QI ++ + + + G ++V+V + K + H+ + +
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSL 271
Query: 233 SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292
+ G + ++ G D L W P + + ++L C S D +
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRT----PYGASIFQSKES-----SSVLSCDISVDDKYIV 322
Query: 293 AGSSDRMVYIWD 304
GS D+ +++
Sbjct: 323 TGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 1e-10
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 2/138 (1%)
Query: 76 SHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135
+ D + + + I L + G + + V +
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259
Query: 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA 195
+ H S V S + G VS D W +I + + + S
Sbjct: 260 QLH-LHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD 317
Query: 196 SDKIYTGGIDNDVKVWDL 213
I TG D V+++
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 6/140 (4%)
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVK 209
+ G V D R I T + AV+ S+ + +YTGG VK
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK 75
Query: 210 VWDLRKGEV-----SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRC 264
VWD+ + + I L PDG L+ G L IWD+ P+ +
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 265 VKILEGHQHNFEKNLLKCGW 284
Sbjct: 136 ELTSSAPACYALAISPDSKV 155
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 9e-06
Identities = 35/205 (17%), Positives = 56/205 (27%), Gaps = 16/205 (7%)
Query: 106 LHWTTDGS-QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
H T DG Q + PD + +QI + H V + S V +G
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT-RHVYTGG-K 71
Query: 165 GTAKLWDMRQRGAIQTFPD------KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV 218
G K+WD+ G I + + GG + + +WDL
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 219 SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278
+ + +L+ + I +
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR------QFQGHTDG 185
Query: 279 LLKCGWSPDGSKVTAGSSDRMVYIW 303
S DG+K+ G D V W
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSW 210
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV 86
+ + S+V + + I +GS D+ ++ V
Sbjct: 300 IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (209), Expect = 1e-19
Identities = 58/306 (18%), Positives = 99/306 (32%), Gaps = 33/306 (10%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWT 109
I + VY ++++ I SG D I +W + + +L GH ++L L +
Sbjct: 8 IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD 64
Query: 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169
S+ + + S D + +
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC-----SKDRSIAV 119
Query: 170 WDMRQRGAIQTFPDKYQITAVSFSDASDK--IYTGGIDNDVKVWDLRKGEVSMTLQGHQD 227
WDM I A D I + D +KVW+ E TL GH+
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 228 MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287
I + +++ D + +WD+ C+++LEGH+ D
Sbjct: 180 GIACL--QYRDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELV------RCIRFD 227
Query: 288 GSKVTAGSSDRMVYIWDTTS---------RRILYKLPGHTGSVNESVFHATEPVIGSCSS 338
++ +G+ D + +WD + L L H+G V F I S S
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSH 285
Query: 339 DKQIYL 344
D I +
Sbjct: 286 DDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.3 bits (196), Expect = 8e-18
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 15/187 (8%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136
DR I +W + + + D I+SAS D+T++ W+ T + ++
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 172
Query: 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS 196
+ H + LVVSGS D T +LWD+ ++ ++ +
Sbjct: 173 TLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDN 228
Query: 197 DKIYTGGIDNDVKVWDLRKGEVSM---------TLQGHQDMITGMSLSPDGSYLLTNGMD 247
+I +G D +KVWDL TL H + L D ++++ D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHD 286
Query: 248 CKLCIWD 254
+ IWD
Sbjct: 287 DTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.7 bits (210), Expect = 2e-19
Identities = 43/345 (12%), Positives = 101/345 (29%), Gaps = 56/345 (16%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L GH ++V T + +G+ D+ I ++ + K + L GH + L + G
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG 65
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ ++ + +++ + +V+GS D T +W +
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYT----------------------GGIDNDVKV 210
+ ++ +++ V + + + G DN + V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKL-------------------- 250
WD+ + + L GH D I + ++ MD +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 251 ----------CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 300
+ + + NL + S+
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305
Query: 301 YIWDTTSRRILYK-LPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
I++ S ++++ + + F ++ + D Q +L
Sbjct: 306 NIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 5e-09
Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136
H + + I+ + + +++ +GK +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 317
Query: 137 K-MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+ + + S + LV + DG + L
Sbjct: 318 ANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 5e-05
Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 14/239 (5%)
Query: 67 PAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126
P + + + D L + + V + + G+ ++S S D TL
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ 186
WDV K + ++ H + S + + D T ++WD+ + T
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLENGELMYTLQGHTA 244
Query: 187 ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246
+ + + D + + S H ++ ++ +L +G
Sbjct: 245 LVGLLRLSDKFLVSA---AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301
Query: 247 DCKLCIWDMRPYAPQNRCVK-ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + I+++R + V + + + V A D ++
Sbjct: 302 ENQFNIYNLR----SGKLVHANILKDA----DQIWSVNFKGKT-LVAAVEKDGQSFLEI 351
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.7 bits (205), Expect = 1e-18
Identities = 35/314 (11%), Positives = 96/314 (30%), Gaps = 22/314 (7%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK--GHKNAILDLH 107
+ + + + +K P+ +++ S D + ++ KN +L+ +K+ +L +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 108 WTTDGSQIIS-ASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
+ + I + + D+ + + + + + C + G +++ S DG
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGI-------DNDVKVWDLRKGEVS 219
++ D R G + + T ++ V+ + L E
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 220 MTLQGHQD----MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+ L + + +D ++ + K H
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 276 EKNLLKCG-------WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHA 328
+SP + SD ++ W+ +R+ + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC 302
Query: 329 TEPVIGSCSSDKQI 342
++ ++ +SD
Sbjct: 303 SDNILCLATSDDTF 316
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.0 bits (172), Expect = 2e-14
Identities = 32/280 (11%), Positives = 72/280 (25%), Gaps = 30/280 (10%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK---QIKKMAEHNSFVNS 147
+ + + K+ I D+ S ++ S D +L + + + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 148 CCPSRRGPPLVVSGSDDGTAKLWDMR--QRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205
C + G+ G D+ T + DK+ D
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 206 NDVKVWDLRKGEVSMTLQGHQD------MITGMSLSPDGSYLLTNGMDCKLCIWDMRPYA 259
++V D R + + + ++ + S L+ + ++ + +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL---- 177
Query: 260 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR----------- 308
P + + S D V + +
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 309 ----RILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
R+ K VN F + + SD I
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (154), Expect = 5e-12
Identities = 28/306 (9%), Positives = 76/306 (24%), Gaps = 39/306 (12%)
Query: 42 RTSSLESPIMLLTGHQSAVYTMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK 100
+ ++ ++ + F I G+ +I + G +
Sbjct: 41 DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA 100
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM-----AEHNSFVNSCCPSRRGP 155
N + ++I+AS D + D + + N
Sbjct: 101 NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160
Query: 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-----QITAVSFSDASDKIYTGGIDNDVKV 210
++ G ++ + + + ++ + ID V V
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220
Query: 211 WDLRKGE---------------VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM 255
+++ + + SP +L T G D + W++
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
Query: 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP 315
+ + +K + + + + +SD + +
Sbjct: 281 Q----TRKKIKNFAKFNEDS-----VVKIACSDNILCLATSDDTFKTNAAIDQ----TIE 327
Query: 316 GHTGSV 321
+ S+
Sbjct: 328 LNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 3e-08
Identities = 20/190 (10%), Positives = 51/190 (26%), Gaps = 23/190 (12%)
Query: 61 YTMKFNPAGTVIASGSHDRDIFLWHVHGDC---KNFMVLKGHKNAILDLHWTTDGSQIIS 117
+ + + G ++ + + + +
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211
Query: 118 ASPDKTLRAWDVETG---------------KQIKKMAEHNSFVNSCCPSRRGPPLVVSGS 162
+S D + + + K VNS S R + +
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAG 270
Query: 163 DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222
DG W+++ R I+ F + + V + + + + D+ K + T+
Sbjct: 271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN----AAIDQTI 326
Query: 223 QGHQDMITGM 232
+ + I +
Sbjct: 327 ELNASSIYII 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.7 bits (197), Expect = 2e-17
Identities = 37/332 (11%), Positives = 82/332 (24%), Gaps = 62/332 (18%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH---GDCKNFMVLKGHKNAILDLHWTT- 110
H + ++++ + S S D + +W + + H
Sbjct: 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 111 --------DGSQIISASPDKTLRAWDVETGKQIKKMAEH--------------NSFVNSC 148
+ + + S L + + + KK+ +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ-------------------ITA 189
R +V+ GT +W T+
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 190 VSFSDASDKIYTGGIDNDVKVWD------LRKGEVSMTLQGHQDMITGMSLSPDGSYLLT 243
V S+ I TG + V++ + L E ++ + + I + SP GS L
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 244 NGMDCKLCI---WDMRPYAPQNRCVKILEGHQ-----HNFEKNLLKCGWSPDGSKVTAGS 295
++ Q ++ ++ G + +
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308
Query: 296 SDRMVYIWDTTSRRILYKLPGHTGSVNESVFH 327
D + WD ++ + L H +
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.7 bits (184), Expect = 6e-16
Identities = 38/312 (12%), Positives = 77/312 (24%), Gaps = 67/312 (21%)
Query: 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI------------KKMAEHN 142
K H I + S +S S D L+ WD + K H
Sbjct: 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 143 SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-----------KYQITAVS 191
+ + LV + S G + + + + K+ A+
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 192 FSDASD-----KIYTGGIDNDVKVWDLRKGE------------------VSMTLQGHQDM 228
+ ++D ++ + +W +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG 288
T + +S G + T + + I ++ P N ++ +SP G
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQG 243
Query: 289 SKVTAGSSDRMVYIW----------------DTTSRRILYKLPGHTGSVNESVFHATEPV 332
S + T S + H+ V F+ +
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303
Query: 333 IGSCSSDKQIYL 344
+ S D ++
Sbjct: 304 LCSAGWDGKLRF 315
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 1e-14
Identities = 38/299 (12%), Positives = 84/299 (28%), Gaps = 61/299 (20%)
Query: 62 TMKFNPAGTVIASGSHDRDIFLWHVH---------GDCKNFMVLKGHKNAILDLHWTTDG 112
+ ++A+ S D+ + + + + + K++ L W
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 113 SQ-----IISASPDKTLRAWDVETGKQ------------------IKKMAEHNSFVNSCC 149
+ +++ T W ++ + F S
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 150 PSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY-------QITAVSFSDASDKIYTG 202
S RG L+ +G ++GT ++ ++ + F ++ I +V FS +
Sbjct: 192 ISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 203 GIDNDVKVW----------------DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246
N + S+ H + +S + G L + G
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309
Query: 247 DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305
D KL WD++ + L H + E G + + ++
Sbjct: 310 DGKLRFWDVK----TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 364
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (138), Expect = 4e-10
Identities = 32/260 (12%), Positives = 85/260 (32%), Gaps = 49/260 (18%)
Query: 37 PNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAG-----TVIASGSHDRDIFLWHVHGDCK 91
+ ++ + ++ + + + +K+ + + + ++W H
Sbjct: 99 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158
Query: 92 NFMVLKGHKNAILDLHWT----------------TDGSQIISASPDKTLR------AWDV 129
L + + L+L T ++ I + + T++ +
Sbjct: 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPL 218
Query: 130 ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTA---KLWDMRQRGAIQTFPDKYQ 186
+ M +++ + S S + L+ D + L++ I +
Sbjct: 219 YNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 277
Query: 187 --------------ITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMI--- 229
+ ++SF+D+ + + + G D ++ WD++ E TL H D I
Sbjct: 278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 337
Query: 230 -TGMSLSPDGSYLLTNGMDC 248
+++ G L G+
Sbjct: 338 EDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 7e-07
Identities = 24/171 (14%), Positives = 61/171 (35%), Gaps = 26/171 (15%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH---------------GDCKNFMVLKGHK 100
+ +++ ++KF+P G+++A ++ + + H
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVS 160
+ ++ L + G + SA D LR WDV+T ++I + H +
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE---H 346
Query: 161 GSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211
G ++D++ K + +D ++ + +D ++ +
Sbjct: 347 GDSLAEPGVFDVKF--------LKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 78.8 bits (192), Expect = 6e-17
Identities = 33/323 (10%), Positives = 73/323 (22%), Gaps = 21/323 (6%)
Query: 38 NGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK 97
G+ + +L + ++ V FL +
Sbjct: 23 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE 82
Query: 98 GHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS---------C 148
+ + + +G + A+ + D+ETGK + +
Sbjct: 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142
Query: 149 CPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDV 208
G ++DM R + A +F S +Y +
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLD 202
Query: 209 KVWDLRKGEVSM-------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ 261
D S + L P D P
Sbjct: 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 262
Query: 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321
+++ + + + ++ +D +R K+ ++
Sbjct: 263 PGDYRMIIPLESSI-LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNL 317
Query: 322 NESVFHATEPVIGSCSSDKQIYL 344
+ A + D +IY
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.0 bits (164), Expect = 2e-13
Identities = 16/194 (8%), Positives = 44/194 (22%), Gaps = 20/194 (10%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--- 133
+ + + + + D + S + D
Sbjct: 155 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214
Query: 134 ----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM--------RQRGAIQTF 181
+ + N R +G D R I
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSE-AGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273
Query: 182 PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYL 241
+ + + + +D++ + + ++ +T + LS D +
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTV 329
Query: 242 LTNGMDCKLCIWDM 255
+ D K+ + +
Sbjct: 330 MVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.4 bits (160), Expect = 8e-13
Identities = 19/182 (10%), Positives = 41/182 (22%), Gaps = 17/182 (9%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM------VLKGHKNAILDLH 107
T S Y F+ + S+ +F V+ +
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 108 WTTDGSQIISASPDKT-------LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVS 160
+ D D + I + +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA-YYQG 293
Query: 161 GSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM 220
+ G +D+ + + + +T + S + D + + L K E
Sbjct: 294 APEKGVLLKYDV-KTRKVTEVKN--NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Query: 221 TL 222
T+
Sbjct: 351 TV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.4 bits (160), Expect = 9e-13
Identities = 23/240 (9%), Positives = 48/240 (20%), Gaps = 29/240 (12%)
Query: 84 WHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS 143
N+ + + + +D+E K E++
Sbjct: 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 180
Query: 144 FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ--------ITAVSFSDA 195
+ + S D K
Sbjct: 181 DYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238
Query: 196 SDKIYTGGIDNDVKVW-------DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
S G D + D + + L+ + + +Y
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298
Query: 249 KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSR 308
L +D + R V ++ + + S D V D +Y +
Sbjct: 299 VLLKYD-----VKTRKVTEVKNNLTDLR-------LSADRKTVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 64.5 bits (155), Expect = 3e-12
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 11/137 (8%)
Query: 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV------HGDCKNFMVLKGHKNAI 103
++ + K P +G +D + GD + + L+
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
+ A L +DV+T K+ E + + S V+ D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADR-KTVMVRKD 334
Query: 164 DGTAKLWDMRQRGAIQT 180
DG + + + +T
Sbjct: 335 DGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.6 bits (132), Expect = 2e-09
Identities = 9/86 (10%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
L + + V + KN + DL + D
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADR 326
Query: 113 SQIISASPDKTLRAWDVETGKQIKKM 138
++ D + + +E + + +
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 75.4 bits (183), Expect = 5e-16
Identities = 48/294 (16%), Positives = 81/294 (27%), Gaps = 9/294 (3%)
Query: 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDG 112
GH A+ + + G + S + I W + N + H I + T+ G
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ D +G K + + + + ++
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 173 RQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
+ P Y + V+ S+ + GG D+ V V+ L VS
Sbjct: 128 GKL---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 233 SLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVT 292
+ L + I + + WSPD ++
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN----SWTFHTAKVACVSWSPDNVRLA 240
Query: 293 AGSSDRMVYIWD--TTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYL 344
GS D V +W+ S + H S SV E I S D I
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 1e-06
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 216 GEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
G + GH IT +S S DG L + + + WD+ ++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS----TGISNRVFPDVH--- 54
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI 310
++ + + S D + + +
Sbjct: 55 -ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 5e-06
Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDCKNFMVLKGHKNAILDLHWTTDGSQ 114
H + V + ++P +A+GS D + +W+++ ++ H + ++ + +
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 115 IISASPDKTLRAWDV 129
I+SA D ++ W+V
Sbjct: 283 IVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 3e-05
Identities = 20/164 (12%), Positives = 58/164 (35%), Gaps = 7/164 (4%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI 115
+ + +A G D + ++ + G + + H I + ++ +G+ +
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL--VVSGSDDGTAKLWDMR 173
++ + + + V ++ P + +GS D + +W+M
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254
Query: 174 QRGAIQTF----PDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213
+ + +V + + I + G D+++K W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 6e-05
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 199 IYTGGIDNDVKVWDLRKGE--VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWD 254
+ TG +DN V VW++ K + H + + + +++ G D + W+
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 8e-04
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITA 189
G + HN + + S G + S +G WD+ + + FPD IT
Sbjct: 2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGM 232
+ + ++T D+ +KV V + + +
Sbjct: 61 IKTTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 102
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.1 bits (177), Expect = 3e-15
Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 25/302 (8%)
Query: 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDL 106
+ + ++GH + + NP + SGS+D I W + + H N I+ L
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
Query: 107 HWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
S + + + ++ + +H S ++D
Sbjct: 53 DN----------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 102
Query: 167 AKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQ 226
+ I++ +AVS S + + +
Sbjct: 103 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 162
Query: 227 DMITGMSLSPDG---SYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283
+ +S+SP + G + +
Sbjct: 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222
Query: 284 WSPDGSKVTAGSSDRMVYIWDT-TSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQI 342
+ V GS D ++I+ +I+ L H VN ++ ++ S +D I
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACI 281
Query: 343 YL 344
Sbjct: 282 KR 283
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.7 bits (124), Expect = 2e-08
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI 115
+ + ++A+GS D +IF++ V K L HK+ + +L W T +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272
Query: 116 ISASPDKTLRAWDV 129
+S+ D ++ W+V
Sbjct: 273 VSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.5 bits (121), Expect = 5e-08
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 3/125 (2%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLH 107
+ ++ S Y + G ++ R++ +
Sbjct: 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222
Query: 108 WTTDGSQIISASPDKTLRAWDVET-GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGT 166
+ + + S D + + V+ K IK + H VN+ +VS D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADAC 280
Query: 167 AKLWD 171
K W+
Sbjct: 281 IKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.6 bits (116), Expect = 2e-07
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRK-GEVSMTLQGHQDM 228
W R + A D + TG +D ++ ++ +++ ++ L H+D
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 229 ITGMSLSPDGSYLLTNGMDCKLCIWD 254
+ + L+++G D + W+
Sbjct: 261 VNNLLWETPS-TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 6e-06
Identities = 13/138 (9%), Positives = 36/138 (26%), Gaps = 3/138 (2%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136
D ++ + + G ++ + ++
Sbjct: 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 208
Query: 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD--KYQITAVSFSD 194
LV +GS D ++ +++ I + K + + +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 195 ASDKIYTGGIDNDVKVWD 212
+ + G D +K W+
Sbjct: 269 -PSTLVSSGADACIKRWN 285
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.9 bits (174), Expect = 1e-14
Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 25/282 (8%)
Query: 43 TSSLESPIMLLTGHQS-AVYTMKFNPA--GTVIASGSHDRDIFLWHVHGDCKNFM----- 94
S P++ TGH S V T+KF+P + SG + +W D ++
Sbjct: 48 GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107
Query: 95 --VLKGHKNAILDLHWTTDGSQIISASP--DKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150
+ I D+ W +G ++ D ++G + +++ H+ +N+C
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167
Query: 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210
+ P ++ DDG+ + + ++ + +
Sbjct: 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227
Query: 211 WDL--------RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262
+ + Q D T G D + +WD+ +
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT----TS 283
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
+CV+ + + + +G ++ + S D + ++
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.5 bits (160), Expect = 6e-13
Identities = 32/307 (10%), Positives = 72/307 (23%), Gaps = 18/307 (5%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN--FMVLKGHKNAI---LDLHWTT 110
++ + ++P IA GD K + GH +++ +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 111 DGSQIISASPDKTLRAWDVETGKQIKKM--------AEHNSFVNSCCPSRRGP-PLVVSG 161
+ S + W K+ + ++ G VV
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 162 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT 221
D ++ Q S + + + +D V + +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 222 LQGHQDM-ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLL 280
+ S + + + ++ + +
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 281 KCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNE---SVFHATEPVIGSCS 337
D K +D + +WD T+ + + K + V I S S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 338 SDKQIYL 344
D +
Sbjct: 316 LDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 3e-10
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 2/121 (1%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS 113
V + + F K + + D
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 114 QIISASPDKTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171
+ + D T+R WDV T K ++ + + G ++S S DGT ++
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Query: 172 M 172
+
Sbjct: 325 L 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 8e-07
Identities = 10/141 (7%), Positives = 35/141 (24%), Gaps = 4/141 (2%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136
+ + + + + + + + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP---DKYQITAVSFS 193
+ + S + D T ++WD+ +Q + + V
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 194 -DASDKIYTGGIDNDVKVWDL 213
+ +I + +D + ++L
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (170), Expect = 4e-14
Identities = 31/278 (11%), Positives = 72/278 (25%), Gaps = 38/278 (13%)
Query: 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHV---HGDCKNFMVLKGHKNAILDLHWTTD 111
++Y+ +P G + + + H + F G + +
Sbjct: 86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145
Query: 112 GSQIISASPDKTL-------RAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD 164
++ A+ D +L DV+TGK + N + S
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPR 204
Query: 165 GTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG 224
+ F D T + DL+ G+
Sbjct: 205 HEFSMLYTI----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248
Query: 225 -HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283
++ SP + ++ L +D++ H +
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKA---ANLDHTYYC------VA 298
Query: 284 WSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321
+ G K+ G + + +++ + + + G +
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.9 bits (159), Expect = 1e-12
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 1/172 (0%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGS 113
+ + + + V + + D
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 114 QIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMR 173
+A + D++TGK + + + P + G + +D++
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLK 280
Query: 174 QRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGH 225
QR I+ + V+F DK+Y GG ND+ V++ E ++
Sbjct: 281 QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 62.1 bits (149), Expect = 2e-11
Identities = 25/269 (9%), Positives = 58/269 (21%), Gaps = 37/269 (13%)
Query: 108 WTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGT 166
+I + L DV + K + + V + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 167 AKLWDMRQRGAIQTFPD-------KYQITAVSFSDASDKIYTGGIDND------------ 207
D+ + + + S ++Y
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 208 VKVWDLRKGEVSMTLQGHQDM--ITGMSLSPDGSYLLTNGMDCKLCIWDMRP-------- 257
++V+ G + ++ + M + DGS + K+ + +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 258 ------YAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL 311
AP + +H F + D D + +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 312 YKLPG-HTGSVNESVFHATEPVIGSCSSD 339
+ T + +P +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLN 272
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 1e-08
Identities = 11/169 (6%), Positives = 34/169 (20%), Gaps = 14/169 (8%)
Query: 190 VSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLL-TNGMD 247
+ + + N++ V D+ V + + ++PD N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 248 CKLCIWDMRPYAPQNRCVKILEGHQH----------NFEKNLLKCGWSPDGSKVTAGSSD 297
+ D+ + K +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 298 RMVYIWDTTSRRILYKLPGHTG--SVNESVFHATEPVIGSCSSDKQIYL 344
+ ++ T + V + + ++ +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 8/89 (8%)
Query: 231 GMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK 290
G +L Y++ L + D+ + K +PD
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVA----SDTVYKSCVMPDKFGPGTA---MMAPDNRT 53
Query: 291 V-TAGSSDRMVYIWDTTSRRILYKLPGHT 318
+ +Y D + + + +
Sbjct: 54 AYVLNNHYGDIYGIDLDTCKNTFHANLSS 82
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 69.5 bits (168), Expect = 5e-14
Identities = 47/286 (16%), Positives = 97/286 (33%), Gaps = 9/286 (3%)
Query: 65 FNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTL 124
PAG I + ++ V + + H + + G S +
Sbjct: 25 NTPAGDKIQYCN-GTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82
Query: 125 RAWDVETG-----KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ 179
R WD I + ++ S+R + G L+D
Sbjct: 83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL 142
Query: 180 TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGS 239
T + + +I +G DN V +++ + T H + + +PDGS
Sbjct: 143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 202
Query: 240 YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM 299
+ G D + +++ ++ WSPDG+K+ + S+D+
Sbjct: 203 LFASTGGDGTIVLYNGVDGTKTGVFEDD-SLKNVAHSGSVFGLTWSPDGTKIASASADKT 261
Query: 300 VYIWDTTSRRILYKLPGHTGSVNESV-FHATEPVIGSCSSDKQIYL 344
+ IW+ + ++ +P T ++ + T+ + S S++ I
Sbjct: 262 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 67.2 bits (162), Expect = 3e-13
Identities = 31/268 (11%), Positives = 78/268 (29%), Gaps = 18/268 (6%)
Query: 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM----VLKGHKNAI 103
+ + T H K +P+G ASG ++ +W V G I
Sbjct: 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
Query: 104 LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD 163
+ + + + + + R ++ D
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
Query: 164 DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT-- 221
+ A + + +V ++ + G D + +++ G +
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228
Query: 222 -----LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFE 276
H + G++ SPDG+ + + D + IW++ + K + +
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA----TLKVEKTIPVGTRIED 284
Query: 277 KNLLKCGWSPDGSKVTAGSSDRMVYIWD 304
+ + G + + S++ + +
Sbjct: 285 Q---QLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 4e-10
Identities = 21/88 (23%), Positives = 36/88 (40%)
Query: 85 HVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSF 144
+ + H ++ L W+ DG++I SAS DKT++ W+V T K K +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
+ +VS S +G +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 3e-07
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG 245
+ + A DKI V + + H T SP G Y +
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 246 MDCKLCIWDMRPYAPQNRC 264
+ + IWD +
Sbjct: 78 VHGNVRIWDTTQTTHILKT 96
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 14/180 (7%), Positives = 51/180 (28%), Gaps = 1/180 (0%)
Query: 77 HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK 136
D + + + + + A + + G+ K
Sbjct: 131 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 190
Query: 137 KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAS 196
+ + + G + + + + +++ + +++S
Sbjct: 191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250
Query: 197 DKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDM-ITGMSLSPDGSYLLTNGMDCKLCIWDM 255
KI + D +K+W++ +V T+ + + + L++ + + +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.6 bits (98), Expect = 4e-05
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVH-GDC-KNFMVLKGHKNAILDLHWTTDGS 113
H +V+ + ++P GT IAS S D+ I +W+V K V ++ L + W
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294
Query: 114 QIISASPDKTLRAWDVE 130
++S S + + + E
Sbjct: 295 ALVSISANGFINFVNPE 311
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 67.5 bits (164), Expect = 4e-13
Identities = 31/265 (11%), Positives = 63/265 (23%), Gaps = 26/265 (9%)
Query: 101 NAILDLHWTTDGSQIISASPDKTLRAWDVETGK-----QIKKMAEHNSFVNSCCPSRRGP 155
A+ + G + D + D+ + +IK +E S S
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT------------AVSFS-DASDKIYTG 202
+ + D + + A+ S + I
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 203 GIDNDVKVWDLRKGE-VSMTLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAP 260
+ + D + T + + L Y +T KL + D +
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241
Query: 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS 320
+ N + + P T+ D V + T P +
Sbjct: 242 VAIEDTGGQTPHPGRGANFVHPTFGPV--WATSHMGDDSVALIGTDPE----GHPDNAWK 295
Query: 321 VNESVFHATEPVIGSCSSDKQIYLG 345
+ +S + + YL
Sbjct: 296 ILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 67.1 bits (163), Expect = 6e-13
Identities = 24/175 (13%), Positives = 47/175 (26%), Gaps = 10/175 (5%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
V+ D G L D Y + S + ++ G D V + DL
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93
Query: 217 EVSMTLQ-----GHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAP---QNRCVKI 267
E + + + + T + Y + + I D P Q+
Sbjct: 94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153
Query: 268 LEGHQHNFEKNLLKCGWSPDGSK-VTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321
+ +++ E + S + + + + D T L
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (122), Expect = 7e-08
Identities = 29/251 (11%), Positives = 60/251 (23%), Gaps = 28/251 (11%)
Query: 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM-- 172
++ + D T + + + V+ S G L V DG + D+
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVI-GRDGKVNMIDLWM 92
Query: 173 ---RQRGAIQTFPDKYQI-TAVSFSDASDKIY-TGGIDNDVKVWDLRKGEVSMTLQ---- 223
I+ + I T+ + D E
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152
Query: 224 -------GHQDMITGMSLSPDGSYLLTNGMD-CKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+ + + S + N + K+ + D L+ + +
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL-------NNLKTTEISA 205
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGS 335
E+ L G ++ R + T L + G A
Sbjct: 206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF 265
Query: 336 CSSDKQIYLGE 346
++G+
Sbjct: 266 GPVWATSHMGD 276
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 39/312 (12%), Positives = 75/312 (24%), Gaps = 56/312 (17%)
Query: 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC----KNFMVLKGHKNAILDLHWTTDGS 113
AV+ + + +G + D + + + + ++ +
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 114 QII-SASPDKTLRAWDVETGKQIKKMAEHN-----------SFVNSCCPSRRGPPLVVSG 161
I A D ET + K + V + S P +V+
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 162 SDDGTAKLWDMRQRGAIQTFP------------DKYQITAVSFSDASDKIYTGGIDNDVK 209
+ G L D ++T D ++ ++A +K+
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241
Query: 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKIL 268
V G + H G T+ M D + + P + KIL
Sbjct: 242 VAIEDTGGQTP----HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 297
Query: 269 E-----GHQHNFEKNLLKCGW------------------SPDGSKVTAGSSDRMVYIWDT 305
+ G F K + D +T SD
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 357
Query: 306 TSRRILYKLPGH 317
+ +
Sbjct: 358 AEWAGITEGQPR 369
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (160), Expect = 7e-13
Identities = 24/223 (10%), Positives = 55/223 (24%), Gaps = 8/223 (3%)
Query: 21 PMEWSTVPYSAPQAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRD 80
+ + + +Q T + + AGT++
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175
Query: 81 IFLWHVHGDCKNFMVLKGHKNA--ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKM 138
+ D D + L D+ETG+ +
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235
Query: 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDK 198
P + + +D+ + +I+ P + +V+ S
Sbjct: 236 VRIMDVFYFSTAVN--PAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 199 IYTGGIDNDVKVWDLRKGEVSMTLQ----GHQDMITGMSLSPD 237
++ GG D+ +D E + + + + D
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.2 bits (144), Expect = 8e-11
Identities = 22/238 (9%), Positives = 54/238 (22%), Gaps = 32/238 (13%)
Query: 115 IISASPDKTLRAWDVETGKQIK--KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
I++ + L D E K +A+ + G + + + D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 173 RQRGAIQTFP------DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQ--- 223
+ + + S + +++ + L
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 224 --------GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDM-------------RPYAPQN 262
IT ++ + DGS L G D + + Q
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS 320
+ + H+ + D + + D + + +
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.7 bits (140), Expect = 2e-10
Identities = 30/265 (11%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 56 HQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI 115
+++ +P G +A + L H + + +
Sbjct: 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139
Query: 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
++ + D + + V + + T D+
Sbjct: 140 LAWARDGSKLYGL-----------GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT-LQGHQDMITGMSL 234
+ D + DL GE++M ++ ++
Sbjct: 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248
Query: 235 SPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG 294
+P + L +D+ +N +K + + S DGS V G
Sbjct: 249 NPAKTRAFG--AYNVLESFDLE----KNASIKRVP-----LPHSYYSVNVSTDGSTVWLG 297
Query: 295 SSDRMVYIWDTTSRRIL--YKLPGH 317
+ + +D + LPG+
Sbjct: 298 GALGDLAAYDAETLEKKGQVDLPGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.5 bits (137), Expect = 6e-10
Identities = 23/199 (11%), Positives = 45/199 (22%), Gaps = 12/199 (6%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQ---ITAVSFSDASDKIY-TGGIDNDVKVWD 212
+++ + + D + + + Y T + D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 213 LRKGEVSMTLQGHQDM-----ITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 267
L GE + + G +LSPDG L +L + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 268 LEG---HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNES 324
+ + W+ DGSK+ D V + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182
Query: 325 VFHATEPVIGSCSSDKQIY 343
S
Sbjct: 183 PDVLAVWNQHESSGVMATP 201
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 2e-06
Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 11/158 (6%)
Query: 197 DKIYTGGIDNDVKVWDLRKGEV--SMTLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIW 253
D I + + V D K V +T+ ++P G T L
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 254 DMR--------PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305
D+ + VK L G + + L SP ++T
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 306 TSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343
K + + + D +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM 159
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (148), Expect = 2e-11
Identities = 18/188 (9%), Positives = 49/188 (26%), Gaps = 26/188 (13%)
Query: 54 TGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KGHKNAILDLHWTTDG 112
+ + ++ + ++ I + F+ + A W G
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250
Query: 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172
Q ++ V+ + + + D
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEW-----------------------RHKTASRFVVVLDA 287
Query: 173 RQRGAIQTFPDKYQITAVSFS-DASDKIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMIT 230
+ + F ++I +++ S D +Y D + + D GE ++
Sbjct: 288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347
Query: 231 GMSLSPDG 238
++ + G
Sbjct: 348 VITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 27/271 (9%), Positives = 63/271 (23%), Gaps = 43/271 (15%)
Query: 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLV--------VS 160
+T S+I + +D T + ++ L
Sbjct: 65 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124
Query: 161 GSDDGTAKLWDMRQRGAIQTFPDKYQI--------TAVSFS-DASDKIYTGGIDNDVKVW 211
S + D+ + + T D S G + ++
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184
Query: 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271
+ +I + S L+ K+ D+ + + +E
Sbjct: 185 HTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK--FLPAVEAL 237
Query: 272 QHNFEKNLLKCGW----------------SPDGSKVTAGSSDRMVYIWDTTSRRILYKLP 315
+ + G + ++ R V + D + L K
Sbjct: 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 297
Query: 316 GHTGSVNESVFHA--TEPVIGSCSSDKQIYL 344
++ + + DK +Y+
Sbjct: 298 MG-HEIDSINVSQDEKPLLYALSTGDKTLYI 327
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 60.0 bits (144), Expect = 1e-10
Identities = 23/194 (11%), Positives = 52/194 (26%), Gaps = 11/194 (5%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
V+ D G L D + ++ Y + S + + G D + + DL
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 217 EVSMTLQ-----GHQDMITGMSLSPDGSYLL-TNGMDCKLCIWDMRPYAPQNRCVKILEG 270
E + + + + + + Y + + I D P +I+
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP----KQIVST 149
Query: 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATE 330
+ + + + T + +L S+ A
Sbjct: 150 RGMTVDTQTYHPEPRVAAI-IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208
Query: 331 PVIGSCSSDKQIYL 344
G S + ++
Sbjct: 209 LADGGWDSSHRYFM 222
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 30/301 (9%), Positives = 73/301 (24%), Gaps = 33/301 (10%)
Query: 66 NPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHK--NAILDLHWTTDGSQIISASPDKT 123
+ + I L D + ++K A+ + G ++ D
Sbjct: 29 DLPNLFSVTLRDAGQIALV----DGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDAR 84
Query: 124 LRAWDVETGK-----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI 178
+ D+ + +IK E S +S + + D
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 179 QTF-------------PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV-SMTLQG 224
Q P+ ++ + + I V + + + + ++T G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 225 HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284
+ Y +T + R +++ +
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDS---KDRRLSALVDVGKTPHPGRGANFVH 261
Query: 285 SPDGS-KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343
G T+ D + + T + P + + + + K +
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPK----NHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 344 L 344
L
Sbjct: 318 L 318
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.5 bits (140), Expect = 3e-10
Identities = 20/285 (7%), Positives = 56/285 (19%), Gaps = 40/285 (14%)
Query: 66 NPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAIL------DLHWTTDGSQIISAS 119
+ + A G + ++ + + + ++
Sbjct: 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142
Query: 120 P-DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD------- 171
V + + F GS + D
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAATHYLGSCPASLAASDLAAAPAA 198
Query: 172 MRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITG 231
GA T A + ++ + + G++
Sbjct: 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258
Query: 232 MSLSPDGSYLLTNGMDCKLCIWDMRPY---------------APQNRCVKILEGHQHNFE 276
+ G ++ + + + A + +
Sbjct: 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--- 315
Query: 277 KNLLKCGWSPDGSK--VTAGSSDRMVYIWDTTSRRILYKLPGHTG 319
+ DG+ + ++ I+D S + + G
Sbjct: 316 --SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.2 bits (129), Expect = 7e-09
Identities = 15/221 (6%), Positives = 45/221 (20%), Gaps = 26/221 (11%)
Query: 37 PNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL 96
G +S +A + ++ AS V
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-----CT 207
Query: 97 KGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156
+ G + + + + + S + G
Sbjct: 208 GAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267
Query: 157 LV------------------VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS-DASD 197
+V + + + A+ + D +
Sbjct: 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS 327
Query: 198 KIY-TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPD 237
Y + ++D + +++ + +S+ +
Sbjct: 328 DNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQNE 367
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 21/226 (9%), Positives = 45/226 (19%), Gaps = 23/226 (10%)
Query: 109 TTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP-------LVVSG 161
+T ++ + +D T I + ++ S P L+
Sbjct: 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142
Query: 162 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV--- 218
A + Q A+ Y G + DL
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSAS--CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200
Query: 219 ---SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNF 275
+ + G + A ++G++
Sbjct: 201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP----AAGATMKAAIDGNESGR 256
Query: 276 EKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV 321
+ G ++ A + + T S
Sbjct: 257 ----KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 18/247 (7%), Positives = 45/247 (18%), Gaps = 27/247 (10%)
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL---------VVSGSDDGTA 167
+ G + F++ G G
Sbjct: 41 YFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAGHSGSDFALASTSFARSAKGKRTDYV 98
Query: 168 KLWDMRQRGAIQTFPDKYQIT--------AVSFSDASDKIY-TGGIDNDVKVWDLRKGEV 218
+++D I + +S + + +
Sbjct: 99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158
Query: 219 SMTLQGHQDMITGMSLSPDGS-YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277
+ + P + L D+ V N
Sbjct: 159 DQLT----KSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS- 213
Query: 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCS 337
+ G V A +S + + + G+ F + + +
Sbjct: 214 -SQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272
Query: 338 SDKQIYL 344
+ +
Sbjct: 273 KNTDGIM 279
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 17/179 (9%), Positives = 37/179 (20%), Gaps = 20/179 (11%)
Query: 150 PSRRGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDAS---------DK 198
R + + GT + W + + AV+ S +
Sbjct: 29 AISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFAR 88
Query: 199 IYTGGIDNDVKVWDLRKGEVSMTLQGHQDMIT-------GMSLSPDGSYLL-TNGMDCKL 250
G + V+V+D ++ + + LL
Sbjct: 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148
Query: 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRR 309
+ + H H S S + + ++
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATH-YLGSCPASLAASDLAAAPAAAGIVGAQC 206
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.4 bits (108), Expect = 2e-06
Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 10/260 (3%)
Query: 58 SAVYTMKFNPAGT-VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII 116
S +P GT V + +H D+ + + ++ + + DG Q+
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGSSPQGVAVSPDGKQVY 89
Query: 117 SASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG 176
+ + + T + + S G L V+ + D T + + +
Sbjct: 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149
Query: 177 AIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSP 236
I T ++ + K+Y D+ + + +G++++P
Sbjct: 150 VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP 209
Query: 237 DGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV-TAGS 295
+G+ +D M N+ + + +PDG KV A S
Sbjct: 210 EGTKAYVTNVDKYFNTVSMIDTG-TNKITARIPVG-----PDPAGIAVTPDGKKVYVALS 263
Query: 296 SDRMVYIWDTTSRRILYKLP 315
V + DT + I +
Sbjct: 264 FCNTVSVIDTATNTITATMA 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 1/158 (0%)
Query: 116 ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175
I+ S + DV + K + ++ S G + V+ + + D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 176 GAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS 235
I T P V+ S ++Y + + G++LS
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 236 PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQH 273
PDG L K V + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 157 LVVSGSDDGTAKLWDMRQRGA---IQTFPDKYQITAVSFSDASDKIYTGG-IDNDVKVWD 212
+ ++ + +W++ GA Q Q+ + S +Y G + V +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 213 LRKGEVSMTLQGHQ---DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269
+ + ++T +T +S G ++ + V ++E
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125
Query: 270 GHQH 273
G
Sbjct: 126 GLDG 129
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.9 bits (99), Expect = 2e-05
Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 13/263 (4%)
Query: 71 VIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDV- 129
V+ + L D N V+ ++ W+ DGS++ + + A +
Sbjct: 9 VVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 68
Query: 130 -ETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188
++++A + S G L + S G+ L+ M +
Sbjct: 69 TLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN 128
Query: 189 AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC 248
+ D + + K ++ + D S +
Sbjct: 129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 188
Query: 249 KLC--IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRM---VYIW 303
+ V++L + + +P+G+ V SS M + +
Sbjct: 189 SSNGGQQHIAKQDLATGGVQVLSSTFLDETPS-----LAPNGTMVIYSSSQGMGSVLNLV 243
Query: 304 DTTSRRILYKLPGHTGSVNESVF 326
T R +LP G V +
Sbjct: 244 STDGRF-KARLPATDGQVKFPAW 265
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 23/183 (12%)
Query: 157 LVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKG 216
SG G ++ + + P F+ S + GI N+ K L
Sbjct: 13 GFWSGGHQGEVRVLGVPSMRELMRIP--------VFNVDSATGW--GITNESKEI-LGGD 61
Query: 217 EVSMTLQGHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILE-GHQHN 274
+ + H I+ DG YL N + ++ + + KI +
Sbjct: 62 QQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLD----IMKTDKITHIPNVQA 117
Query: 275 FEKNLLKCGWSPDGSK--VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPV 332
V + + D T + T E++ A + +
Sbjct: 118 IH----GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173
Query: 333 IGS 335
+
Sbjct: 174 VDG 176
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.9 bits (93), Expect = 3e-04
Identities = 30/211 (14%), Positives = 57/211 (27%), Gaps = 43/211 (20%)
Query: 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA---------WDVETGKQIKKMAEH 141
+ + L G D + +I +A + + + +
Sbjct: 198 ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP 257
Query: 142 NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ-----------RGAIQTFPD-KYQITA 189
+ + S G + +G T + + + R I P+
Sbjct: 258 KN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH 316
Query: 190 VSFSDASDKIYTGGIDNDVKVWDL-------RKGEVSMTLQ--------GHQDMITGMSL 234
+F + T ID+ V W++ V+ Q GH S
Sbjct: 317 TTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESR 376
Query: 235 SPDGSYLLTNGMDCKLCI---WDMRPYAPQN 262
DG +L+ K + P P+N
Sbjct: 377 DADGKWLVV---LSKFSKDRFLPVGPLHPEN 404
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 26/244 (10%), Positives = 67/244 (27%), Gaps = 17/244 (6%)
Query: 83 LWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS------PDKTLRAWDVETGKQIK 136
LW + + + I + + DG +I L ++ E G+ +
Sbjct: 23 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82
Query: 137 ------KMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM---RQRGAIQTFPDKYQI 187
K F + G ++ + + + + + G +
Sbjct: 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA 142
Query: 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247
T + F+D I + + ++ + +
Sbjct: 143 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 202
Query: 248 CKLCIWDMRPYAPQNRC-VKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306
I D+ + + + +H + + DG ++ S +YI++
Sbjct: 203 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRI-LFSKGGSIYIFNPD 261
Query: 307 SRRI 310
+ +I
Sbjct: 262 TEKI 265
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.42 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.35 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.29 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.2 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.18 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.16 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.1 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.04 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.02 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.68 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.64 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.57 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.48 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.28 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.21 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.81 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.71 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.47 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.45 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.42 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.01 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.71 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.52 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.35 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.24 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.84 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.1 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.81 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.87 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.51 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.16 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.96 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.04 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.71 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.43 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 83.27 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-45 Score=310.89 Aligned_cols=286 Identities=26% Similarity=0.458 Sum_probs=257.8
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..|+||.+.|++|+|+|++++||||+.||+|++||+.. .+....+.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 46899999999999999999999999999999999864 45567889999999999999999999999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
..+....+..+...+..+.+.+.+ ..+++++.|+.+++||++++.....+. +...+.++++++++..+++++.|+.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 888877777888888888877765 578899999999999999888777765 456789999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCC--------------------CEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDG--------------------SYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~--------------------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
+|++.+++....+.+|...+.++.|+|++ .++++++.|+.|++||++. ..++..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~ 244 (317)
T d1vyhc1 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLV 244 (317)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT----TEEEEEEE
T ss_pred EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC----CcEEEEEe
Confidence 99999999999999999999999998764 4689999999999999874 45566666
Q ss_pred ccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 270 GHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|. ..+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+|+|.||+|+|||
T Consensus 245 ~~~----~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCS----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCC----CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 653 5788999999999999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-44 Score=312.65 Aligned_cols=280 Identities=19% Similarity=0.320 Sum_probs=240.4
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC--e--eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC--K--NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
+|...|.+|+|+|+|++||+|+ ||.|++||+.... . ......+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 8999999999999999999987 8999999985321 1 223446799999999999999999999999999999987
Q ss_pred CC--ceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCc
Q 019006 131 TG--KQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDND 207 (347)
Q Consensus 131 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 207 (347)
.. +....+..|...+..+.+++.+ .++++++.|+.+++||+.++....... +...+.+++|++++..+++++.|+.
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 4455667778888888887654 588899999999999999887766554 4678999999999999999999999
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPD 287 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 287 (347)
+++||+++++....+. |...|.+++|+|+++++++++.|+.+++||++... .. ....| ...+.+++|+|+
T Consensus 207 v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~-~~~~~----~~~i~~v~~s~~ 276 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KY-QLHLH----ESCVLSLKFAYC 276 (337)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EE-EECCC----SSCEEEEEECTT
T ss_pred ccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc----cc-ccccc----ccccceEEECCC
Confidence 9999999988776654 67889999999999999999999999999997432 11 22222 457899999999
Q ss_pred CCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 288 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 288 g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++|++|+.||.|++||+.+++.+..+ .|...|.+++|+|++++|++++.||+|+||||
T Consensus 277 g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999999999988776 47889999999999999999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-43 Score=305.73 Aligned_cols=290 Identities=19% Similarity=0.343 Sum_probs=244.7
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+..+|+||.+.|++|+|+|++++||||+.||+|++||+.. ......+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc-ceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 34568999999999999999999999999999999999964 45667788999999999999999999999999999999
Q ss_pred ECCCCc----eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCCCCceEEEEEcCCCCeEEEE
Q 019006 128 DVETGK----QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 128 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
+..... ....+..|........... ...+.....+.....++......... ......+....+.+....++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccceeccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 976543 2334444554444333322 24677788888888888776544433 3445678889999999999999
Q ss_pred ecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 203 GIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.|+.|++||+++++....+.+|...|++++|+|++++|++++.|+.|++||++.. .....+... .....+..+
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~~~--~~~~~i~~~ 276 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHD--NIICGITSV 276 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCT--TCCSCEEEE
T ss_pred ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc----ccccccccc--cccCceEEE
Confidence 99999999999999999999999999999999999999999999999999998743 223333222 223568899
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
+|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+|+|.||+|+|||
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.5e-44 Score=315.14 Aligned_cols=288 Identities=25% Similarity=0.414 Sum_probs=238.2
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeE------------------EEeCcccceeEEEEcCCCCE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFM------------------VLKGHKNAILDLHWTTDGSQ 114 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~ 114 (347)
..+|.+.|++|+|+|+|++||+|+ |++|++|++.... ... ...+|...|.+++|+|++++
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS-LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC-EEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccc-eEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 347999999999999999999987 8999999985322 111 22357778999999999999
Q ss_pred EEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEc-
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS- 193 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~- 193 (347)
|++|+.||.|++||...++.+..+..|...+..+.+.+.+ ..+++++.++.+++||.++..............++.+.
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred ceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccccC
Confidence 9999999999999999999988888899999988887764 57888999999999999988777666665555566655
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCceEEEe-------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC----
Q 019006 194 DASDKIYTGGIDNDVKVWDLRKGEVSMTL-------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN---- 262 (347)
Q Consensus 194 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~---- 262 (347)
+++.++++++.||.|++||.+++.....+ .+|...|.+++|+|++++|++++.|+.|++||++......
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence 46789999999999999999988765544 4678899999999999999999999999999987543211
Q ss_pred ----ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEE------EcCCCCE
Q 019006 263 ----RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESV------FHATEPV 332 (347)
Q Consensus 263 ----~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~------~~~~~~~ 332 (347)
.+......| ...+.+++|+|+|++|++|+.||.|++||+.+++++.++.+|.+.|.+++ |+|++.+
T Consensus 295 ~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 295 PNSGTCEVTYIGH----KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp ----CEEEEEECC----SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred ccccceeeecccc----cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCE
Confidence 112222222 35789999999999999999999999999999999999999999999887 5678999
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
|+|+|.||+|+||++
T Consensus 371 l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 371 FATGSGDCKARIWKY 385 (388)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEeCCCEEEEEee
Confidence 999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-41 Score=292.44 Aligned_cols=286 Identities=16% Similarity=0.248 Sum_probs=235.0
Q ss_pred CccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 55 GHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
.+.+.+..++++|+|+.||.++ ++.|.+|++.. ......+.+|...|++++|+|+|++|++|+.||+|++||+.++..
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~-~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC-CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence 3445566889999999999885 56799999964 344556789999999999999999999999999999999988764
Q ss_pred e--eeeeccCcceeEeecCCCCCCEEEEEcC--CCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCe-EEEEecCCcE
Q 019006 135 I--KKMAEHNSFVNSCCPSRRGPPLVVSGSD--DGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDK-IYTGGIDNDV 208 (347)
Q Consensus 135 ~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~dg~i 208 (347)
. ..+..|...|.++++++++. ++++++. +..+++|+..+++....+. +...|.+++|+|++++ +++|+.|+.|
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i 171 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred ccccccccccCcccccccccccc-ccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 3 44667888999999988764 5666654 5669999999888777665 3467999999999885 7789999999
Q ss_pred EEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc---ccccccceEEEEEC
Q 019006 209 KVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH---QHNFEKNLLKCGWS 285 (347)
Q Consensus 209 ~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s 285 (347)
++||+++++....+..|...|+++.|+|+++++++++.|+.+++||++... ....++.. ...+...|.+++|+
T Consensus 172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~h~~~V~~~~~s 247 (311)
T d1nr0a1 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWS 247 (311)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccccCcccccccccccccccccccccccc----ccccccccccccccccccccccccC
Confidence 999999999999999999999999999999999999999999999987532 22223221 11224579999999
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|++++|++|+.||.|+|||+.+++++..++.|.. ....+.+.+++..|++++.||.|++||+
T Consensus 248 ~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 9999999999999999999999999999887754 2334445556678999999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.7e-41 Score=285.23 Aligned_cols=285 Identities=20% Similarity=0.289 Sum_probs=218.4
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE-eCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
..++.||.+.|++|+|+|++++||||+.||+|++||+... +....+ .+|...|.+++|+|++. +++++.|+.+++|+
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence 4678999999999999999999999999999999999643 333333 57999999999999986 56677899999999
Q ss_pred CCCCce---eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 129 VETGKQ---IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 129 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
...... ......+...+..+++.+++. +++ ++.++.+++|+... .........+.+++|+|+++.+++|+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAV-AACYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEE-EEESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCccccccccccccccccccccccccccc-ccc-cccccccccccccc---cccccccccccccccccccccccccccc
Confidence 765322 112223455566677777654 344 34567899998542 2233445678899999999999999999
Q ss_pred CcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 206 NDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 206 g~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
|.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+...... .....+..| ...+.+++|
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~h----~~~v~~l~~ 232 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-AHTNSWTFH----TAKVACVSW 232 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-SCCCCCCCC----SSCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc----ccccccccc
Confidence 999999998776443 44568889999999999999999999999999998743211 111222222 357899999
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCcee--eEEecCCc-cCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRI--LYKLPGHT-GSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~--~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++++|++|+.||.|++||+.++.. +.....|. ..|..+.| +++.+|+|+|.|++|++||+
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 99999999999999999999987643 23334444 45555554 56779999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.6e-41 Score=294.14 Aligned_cols=281 Identities=15% Similarity=0.233 Sum_probs=225.7
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 135 (347)
-.+|++++|+|+|++||+|+.|+.|++|+..+. ......+++|.++|.+++|+|++++|++++.|++|++||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 367999999999999999999999999998643 2345668999999999999999999999999999999999876543
Q ss_pred --eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-----cCCCCceEEEEEcCCCCeEEEEecCCcE
Q 019006 136 --KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-----FPDKYQITAVSFSDASDKIYTGGIDNDV 208 (347)
Q Consensus 136 --~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i 208 (347)
..+..|...+.++.+.+++ ..+++|+.|+++++|++........ ..+...|.+++|+|++.+|++|+.|+.|
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 3445677888888888765 5789999999999999876543322 1345689999999999999999999999
Q ss_pred EEEeCCCC------------------ceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEec
Q 019006 209 KVWDLRKG------------------EVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 209 ~iwd~~~~------------------~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
++||.... +.......|...|.+++|+|++++|++++.|+.|++||+.. ...+..+..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----~~~~~~~~~ 241 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KMAVATLAS 241 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----TTEEEEEEC
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec----ccceeeeec
Confidence 99997542 24456678888999999999999999999999999999874 345556665
Q ss_pred cccccccceEEEEECCCCCEEEEeeCCCeEEEEe--CCCceeeE------------------------------------
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWD--TTSRRILY------------------------------------ 312 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd--~~~~~~~~------------------------------------ 312 (347)
|. ..+.+++|+|++++|++|+ |+.+++|. ...+....
T Consensus 242 ~~----~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
T d1k8kc_ 242 ET----LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316 (371)
T ss_dssp SS----CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred cc----ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccc
Confidence 53 4688999999999888776 56665554 32222110
Q ss_pred ---EecCCccCeeeEEEcCCC----CEEEEecCCCcEEeecC
Q 019006 313 ---KLPGHTGSVNESVFHATE----PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 313 ---~~~~h~~~v~~~~~~~~~----~~l~s~s~D~~i~i~~~ 347 (347)
....|.+.|+++++++.. ..++|+|.||.|+|||+
T Consensus 317 ~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 317 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 001488899999998765 36899999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.2e-39 Score=275.81 Aligned_cols=251 Identities=17% Similarity=0.289 Sum_probs=213.9
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCee-eEEEeCcccceeEEEEcCCCCEEEEecC--CCeEE
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKN-FMVLKGHKNAILDLHWTTDGSQIISASP--DKTLR 125 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~ 125 (347)
....+.+|...|++++|+|+|++||+|+.||+|++|++...... ...+.+|...|.+++|+|++++|++++. +..++
T Consensus 50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence 45578899999999999999999999999999999999754332 3457899999999999999999999876 45699
Q ss_pred EEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEec
Q 019006 126 AWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 126 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+|++++++....+..|...|.++++++.+..++++|+.|+.|++||+++.+....+. +...|.++.++|+++++++++.
T Consensus 130 v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence 999999988888889999999999998887789999999999999999887777664 4578999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEe-------cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecccccccc
Q 019006 205 DNDVKVWDLRKGEVSMTL-------QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEK 277 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~~~-------~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
|+.|++||++++.....+ .+|...|++++|+|++++|++++.||.|++||+++ .++++.+..+.. ...
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t----~~~~~~l~~~~~-~~~ 284 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGTR-IED 284 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCSS-GGG
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC----CcEEEEEECCCC-ccc
Confidence 999999999988766654 35788999999999999999999999999999874 456666665532 233
Q ss_pred ceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 278 NLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 278 ~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
.+.++.| ++.+|++++.||.|++||++
T Consensus 285 ~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 285 QQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred eEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 4455555 45689999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-38 Score=271.17 Aligned_cols=285 Identities=26% Similarity=0.445 Sum_probs=218.3
Q ss_pred cCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 48 SPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 48 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.+..+|+||.+.|.+ +++++|++||||+.||+|++||+.. .+....+.+|...|.+++|+++ +|++++.|+.+++|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 82 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence 345689999999865 3566899999999999999999963 4566788999999999999874 99999999999999
Q ss_pred ECCCCceeeeeeccCcceeEe-------------------------------------ecCCCCCCEEEEEcCCCceEEE
Q 019006 128 DVETGKQIKKMAEHNSFVNSC-------------------------------------CPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~-------------------------------------~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+............+...+... .........++.++.|+.+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 162 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence 987654432222111110000 0000112356788899999999
Q ss_pred eCCCCCceeecCCC-CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCc
Q 019006 171 DMRQRGAIQTFPDK-YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCK 249 (347)
Q Consensus 171 d~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~ 249 (347)
|.+....+..+... ..+.. +.+++..+++++.||.|++||++.++....+.+|...+.+++++ +++|++++.|+.
T Consensus 163 d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~ 238 (342)
T d2ovrb2 163 DPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST 238 (342)
T ss_dssp EGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred ecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCE
Confidence 98877766665433 33443 44567899999999999999999999999999999999888775 569999999999
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec-----CCccCeeeE
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP-----GHTGSVNES 324 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~ 324 (347)
|++||+...+ ....+..+. .....+.++.+ ++.++++|+.||.|++||+.++++++++. +|.+.|+++
T Consensus 239 i~iwd~~~~~----~~~~~~~~~-~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v 311 (342)
T d2ovrb2 239 VKIWDIKTGQ----CLQTLQGPN-KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 311 (342)
T ss_dssp EEEEETTTCC----EEEEECSTT-SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred EEEEeccccc----ccccccccc-eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence 9999987532 233444332 12334555555 56799999999999999999999988763 677889999
Q ss_pred EEcCCCCEEEEecCCCc----EEeecC
Q 019006 325 VFHATEPVIGSCSSDKQ----IYLGEI 347 (347)
Q Consensus 325 ~~~~~~~~l~s~s~D~~----i~i~~~ 347 (347)
+|+|++.++|+++.||+ |++||+
T Consensus 312 ~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 312 RASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 99999999999999986 999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-37 Score=269.30 Aligned_cols=278 Identities=22% Similarity=0.435 Sum_probs=209.6
Q ss_pred eeEecCccccE-EEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 50 IMLLTGHQSAV-YTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 50 ~~~~~~h~~~V-~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
..+|+||...| .|++| ++++||||+.||+|++||+. ..+....+.+|.+.|.+++|+|+ .+|++|+.|++|++|+
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~-~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETT-TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECC-CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 45789998875 66665 68899999999999999996 45677889999999999999985 5899999999999999
Q ss_pred CCCCceeeeeeccCcce--eEeecCCCCCCEEEEEcCCCceEEEeC----------------------------------
Q 019006 129 VETGKQIKKMAEHNSFV--NSCCPSRRGPPLVVSGSDDGTAKLWDM---------------------------------- 172 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~s~~~d~~i~iwd~---------------------------------- 172 (347)
....+............ ....+.+ +...+++++.|+.|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 98876554433222111 1111111 2234455555555555554
Q ss_pred -----------------------------CCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe
Q 019006 173 -----------------------------RQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL 222 (347)
Q Consensus 173 -----------------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 222 (347)
++++.+.... ....+.++.+++.+..+++++.|+.|++||++++.....+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence 3333333222 2345678889999999999999999999999999999999
Q ss_pred cCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEE
Q 019006 223 QGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI 302 (347)
Q Consensus 223 ~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~v 302 (347)
.+|...|.+++++ +++|++++.||.|++||++... ..+..|... ......+++++.+|++|+ ||.|++
T Consensus 240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~---~~~~~~~~~~~~~l~~g~-d~~i~v 307 (355)
T d1nexb2 240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS------RKFSYHHTN---LSAITTFYVSDNILVSGS-ENQFNI 307 (355)
T ss_dssp CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC------EEEEEECTT---CCCCCEEEECSSEEEEEE-TTEEEE
T ss_pred ccccccccccccc--cceeeeeecccccccccccccc------eecccccCC---ceEEEEEcCCCCEEEEEe-CCEEEE
Confidence 9999999999986 4799999999999999987532 223333321 122235678888887775 889999
Q ss_pred EeCCCceeeE-EecCCccCeeeEEEcCCCCEEEEecCCCcEEee
Q 019006 303 WDTTSRRILY-KLPGHTGSVNESVFHATEPVIGSCSSDKQIYLG 345 (347)
Q Consensus 303 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~ 345 (347)
||+++++++. .+.+|.+.|++++|+|+ .++++++.||+++||
T Consensus 308 wd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 308 YNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp EETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred EECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 9999999885 57889999999999986 588899999996655
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-37 Score=264.82 Aligned_cols=242 Identities=18% Similarity=0.318 Sum_probs=213.8
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCC-CeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGD-CKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
..+|.+.|.+++|+|++++|++|+.||.|++|++... ......+..|...+..++|+|++.++++++.|+.+++|++.+
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~ 172 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4589999999999999999999999999999998643 234456788999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
++.......|...+.++++++.+ ..+++++.|+.+++||+++++.+..+.+...+.+++|+|+++.+++++.|+.+++|
T Consensus 173 ~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~ 251 (337)
T d1gxra_ 173 QTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccc
Confidence 98888888888889888887765 57888999999999999999888888888899999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
|+++++.. ....|...|++++|+|++++|++++.|+.|++||+... ..+..+. | ...+.+++|+|++++|
T Consensus 252 d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~-~----~~~v~~~~~s~d~~~l 321 (337)
T d1gxra_ 252 HVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSK-E----SSSVLSCDISVDDKYI 321 (337)
T ss_dssp ETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEE-C----SSCEEEEEECTTSCEE
T ss_pred cccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC----CEEEEcc-C----CCCEEEEEEeCCCCEE
Confidence 99887754 55678999999999999999999999999999998743 3333332 2 3578999999999999
Q ss_pred EEeeCCCeEEEEeC
Q 019006 292 TAGSSDRMVYIWDT 305 (347)
Q Consensus 292 ~sgs~dg~i~vwd~ 305 (347)
++|+.||.|+|||+
T Consensus 322 ~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 99999999999986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-36 Score=257.19 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=218.9
Q ss_pred cEEEEEECCCCCeEEEeeCCCc-EEEEeccCC-CeeeEEEeCcc-cceeEEEEcC--CCCEEEEecCCCeEEEEECCCCc
Q 019006 59 AVYTMKFNPAGTVIASGSHDRD-IFLWHVHGD-CKNFMVLKGHK-NAILDLHWTT--DGSQIISASPDKTLRAWDVETGK 133 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~-v~~w~~~~~-~~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~ 133 (347)
.+++++|+|+++.||.++.+.. |+.|+.... ......+.+|. ..|++++|+| ++.+|++|+.||+|++||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 3568899999999998876553 566664322 23345677874 6799999998 56799999999999999987654
Q ss_pred eee--------eeeccCcceeEeecCCCCCCEEEEE-cCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCe-EEEE
Q 019006 134 QIK--------KMAEHNSFVNSCCPSRRGPPLVVSG-SDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDK-IYTG 202 (347)
Q Consensus 134 ~~~--------~~~~~~~~v~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~ 202 (347)
... .+..+...+.++++++++..+++++ +.++.+++|+..++..+..+. +...+.+++|+|+++. ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 322 2345667788888888765444433 357789999999888887775 5678999999999876 6689
Q ss_pred ecCCcEEEEeCCCCceEEEe---cCCCCceeEEEECCC-CCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccc
Q 019006 203 GIDNDVKVWDLRKGEVSMTL---QGHQDMITGMSLSPD-GSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKN 278 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~v~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
+.|+.+++||.+..+....+ ..|...|.+++|+|+ +.++++++.|+.|++||++. ..++..+.+|.......
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~----~~~~~~l~~~~~~v~~~ 254 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS----GEFLKYIEDDQEPVQGG 254 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT----CCEEEECCBTTBCCCSC
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc----ccccccccccccccccc
Confidence 99999999999887766554 356678999999996 68899999999999999874 45567777776555555
Q ss_pred eEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC--eeeEEEcCC-CCEEEEecCCCcEEeecC
Q 019006 279 LLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS--VNESVFHAT-EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 279 ~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~-~~~l~s~s~D~~i~i~~~ 347 (347)
+.++.| |+|++|++++.|+.|+|||+.+++++..+..|... +..+++.+. +..|+++|.||+|++|||
T Consensus 255 ~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 255 IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 566655 58999999999999999999999999887766554 344444433 347899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-36 Score=255.41 Aligned_cols=271 Identities=19% Similarity=0.272 Sum_probs=210.0
Q ss_pred CcCeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEE
Q 019006 47 ESPIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRA 126 (347)
Q Consensus 47 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 126 (347)
+.|+.+|.||..+|++|+|+| |+||+.||+|++|++.. ...+|...|.+++++++ ..+++++.|+++++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE------EECCCCSCEEEEECCST-TCCEEEETTTEEEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC------CCCCCCCCEEEEEecCC-CeEEEEeecccccc
Confidence 357789999999999999987 99999999999999742 24689999999999875 46899999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
|++...+. ...+..+...+. ..++ ....++.+.+|+..++..+..+.....+. ++++++..+++++.++
T Consensus 72 w~~~~~~~-------~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 72 NGITKHEF-------GSQPKVASANND-GFTA-VLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEG 140 (287)
T ss_dssp TTEEEEEC-------SSCEEEEEECSS-SEEE-EEETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTT
T ss_pred cccccccc-------ccceeeeeeccC-CceE-EEeecccceeeeccceeeeeeccccceee--eeeccCcceeeecccc
Confidence 98754221 122233344433 2334 44566778899998888877776655554 4556677888877765
Q ss_pred -cEEEEeCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEE
Q 019006 207 -DVKVWDLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 207 -~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
.+++|++...+....+. .|...+++++|+|++.+|++++.||.|++||+..... ....+..| ...+.+++|
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h----~~~v~~~~~ 213 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV---KTSRWAFR----TSKINAISW 213 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EECCSCCC----SSCEEEEEE
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc---cccccccc----ccccceeee
Confidence 79999997666555544 4677899999999999999999999999999874321 11112233 356888888
Q ss_pred CCC----------CCEEEEeeCCCeEEEEeCCC-ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 285 SPD----------GSKVTAGSSDRMVYIWDTTS-RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~----------g~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|+ +.+|++|+.|+.|++||+.. .+++..+.+|...|++++|+|++ .|+|+|.|++|++|++
T Consensus 214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 764 56899999999999999876 56777888999999999999986 5889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-35 Score=245.47 Aligned_cols=272 Identities=26% Similarity=0.456 Sum_probs=215.0
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
....+|...|+|++| +|++||||+.||+|++||+.. .+....+++|...|++++| ++++|++|+.|+.|++|++.
T Consensus 9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 345688999999875 799999999999999999963 4567788999999999987 56799999999999999999
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cCCCCceEEEEEcCCCCeEEEEecCC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FPDKYQITAVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg 206 (347)
.+.................. ....++++..++.+.+||......... ..+...+....+. ...+++++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~ 158 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR 158 (293)
T ss_dssp SCCEEEEECCCCSCEEEEEC---CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred cccccccccccccccccccc---cccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCC
Confidence 88776655544443333222 234688899999999999886653322 2344556666665 46788999999
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP 286 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (347)
.|++||+++++....+.++...+..+.++ +.++++++.|+.|++||++.. ..+.....+. ..+. .+++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~----~~v~--~~~~ 226 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHE----ELVR--CIRF 226 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC----CEEEEECCCS----SCEE--EEEC
T ss_pred ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc----eeeeeecccc----eeee--eccc
Confidence 99999999999999999998888887775 578999999999999998743 3344444432 2333 3668
Q ss_pred CCCEEEEeeCCCeEEEEeCCC---------ceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 287 DGSKVTAGSSDRMVYIWDTTS---------RRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
++.+|++|+.||.|++||+.. ...+..+.+|.+.|++++|+ +.+|+|+|.||+|+|||
T Consensus 227 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 899999999999999999643 34567889999999999995 46899999999999998
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-35 Score=250.75 Aligned_cols=246 Identities=27% Similarity=0.482 Sum_probs=216.1
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
...++||.+.|++|+|+|++++|+||+.||+|++||+.+++.+..+..|...|..+++.+.+ .+++++..++.+.+|+.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDF 88 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEET
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc-ccccccccccccccccc
Confidence 34689999999999999999999999999999999999999999999999999999988765 57889999999999998
Q ss_pred CCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 173 RQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 173 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
........+. +...+.++.++++++.+++++.|+.+++||+++++....+.+|...+.+++|+|++++|++++.|+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 8776655543 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECC--------------------CCCEEEEeeCCCeEEEEeCCCceee
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP--------------------DGSKVTAGSSDRMVYIWDTTSRRIL 311 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--------------------~g~~l~sgs~dg~i~vwd~~~~~~~ 311 (347)
+|++... .....+..+. ..+..+.|+| .+.++++|+.||.|++||..+++++
T Consensus 169 ~~~~~~~----~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 169 VWVVATK----ECKAELREHR----HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp EEETTTC----CEEEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EEeeccc----eeeEEEecCC----CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 9998753 3334444432 3345555544 4568999999999999999999999
Q ss_pred EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
.++.+|...|..++|+|++++|++++.||.|++||+
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 276 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 999999999999999999999999999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-35 Score=255.95 Aligned_cols=296 Identities=13% Similarity=0.172 Sum_probs=216.9
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCe--eeEEEeCcccceeEEEEcCCC-CEEEEecCCCeEEE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCK--NFMVLKGHKNAILDLHWTTDG-SQIISASPDKTLRA 126 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~i 126 (347)
+.++++|++.|++|+|+|++++||+|+.||+|++|++..... .+....+|..+|.+++|+|++ .+|++|+.||.|++
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence 456789999999999999999999999999999999864322 233445799999999999864 57899999999999
Q ss_pred EECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee----cC---CCCceEEEEEcCCCCeE
Q 019006 127 WDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT----FP---DKYQITAVSFSDASDKI 199 (347)
Q Consensus 127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~---~~~~v~~~~~~~~~~~l 199 (347)
|++...........+............+...+++++.++++++||++....... .. .........+.+.+..+
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 999887766655555444433333344456889999999999999865433221 11 12234556677788899
Q ss_pred EEEecCCcEEEEeCCCCceEE---EecCCCCceeEEEEC-CCCCEEEEEcCCCcEEEEeCCCCCCcCce--eEEEe---c
Q 019006 200 YTGGIDNDVKVWDLRKGEVSM---TLQGHQDMITGMSLS-PDGSYLLTNGMDCKLCIWDMRPYAPQNRC--VKILE---G 270 (347)
Q Consensus 200 ~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~v~~~-~~~~~l~t~~~d~~i~~wd~~~~~~~~~~--~~~~~---~ 270 (347)
++++.|+.|++||++...... ....+...+.+..+. .++..+++++.||.+.+|++......... ..... .
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 999999999999998664322 223333445555554 46789999999999999998643221110 01111 0
Q ss_pred --cccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 271 --HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 271 --~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
........+.+++|+|++++|++|+.||.|++||+.+++.+.++..+. .+..++|+|++.++++++.|..+++|.
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 111223467899999999999999999999999999999998886543 345578889999999999998776664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-35 Score=258.20 Aligned_cols=241 Identities=16% Similarity=0.166 Sum_probs=199.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCc--eeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGK--QIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA 177 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 177 (347)
.++|++++|+|++++|++|+.||.|++||..+++ .+..+..|...|.++++++++ .++++|+.|++|++||+.++..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccc
Confidence 4689999999999999999999999999998765 566778899999999998865 5889999999999999986654
Q ss_pred eee--c-CCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCce----EEEecCCCCceeEEEECCCCCEEEEEcCCCcE
Q 019006 178 IQT--F-PDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEV----SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKL 250 (347)
Q Consensus 178 ~~~--~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i 250 (347)
... + .+...+.++.|+|+++.+++++.|+.|++|++..... ......|...|.+++|+|++++|++++.|+.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence 322 2 3456799999999999999999999999998765432 33456788899999999999999999999999
Q ss_pred EEEeCCCCCCcC--------------ceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 251 CIWDMRPYAPQN--------------RCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 251 ~~wd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
++||........ ........ ....+.+++|+|+|++|++++.|+.|++||+.+++.+..+.+
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 241 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS----SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC----CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred EEEeeccCccccccccccccccccceeeeeeccC----ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence 999986422111 11112222 235688999999999999999999999999999999999999
Q ss_pred CccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 317 HTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 317 h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|..+|.+++|+|++++|++++ |+.+++|.
T Consensus 242 ~~~~v~s~~fs~d~~~la~g~-d~~~~~~~ 270 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVAAGH-DCFPVLFT 270 (371)
T ss_dssp SSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred ccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence 999999999999998887655 67666653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-34 Score=246.02 Aligned_cols=252 Identities=19% Similarity=0.336 Sum_probs=204.1
Q ss_pred CeeEecCcc-ccEEEEEECC--CCCeEEEeeCCCcEEEEeccCCCe-------eeEEEeCcccceeEEEEcCCCCEEEEe
Q 019006 49 PIMLLTGHQ-SAVYTMKFNP--AGTVIASGSHDRDIFLWHVHGDCK-------NFMVLKGHKNAILDLHWTTDGSQIISA 118 (347)
Q Consensus 49 ~~~~~~~h~-~~V~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~ 118 (347)
....+.+|. ..|++++|+| ++.+||+|+.||+|++|++..... ....+..|..+|.+++|++++++|+++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence 355677885 6799999998 568999999999999999853211 112346788899999999999998877
Q ss_pred cC--CCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec----CCCCceEEEEE
Q 019006 119 SP--DKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF----PDKYQITAVSF 192 (347)
Q Consensus 119 ~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~ 192 (347)
+. ++.+++|+.++++.+..+..|...+.++.+.+.++.++++++.|+.+++||.+..+..... .+...|.+++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence 54 6789999999999999999999999999999888888899999999999999876554433 23456999999
Q ss_pred cCC-CCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEEC---CCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEE
Q 019006 193 SDA-SDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLS---PDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 193 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~---~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
+|+ +.++++++.|+.|++||+++++....+.+|...+.++.|+ |++++|++++.|+.|+|||++. .++++.+
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~----~~~~~~~ 289 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT----SKCVQKW 289 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT----TEEEEEE
T ss_pred ccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC----CCEEEEE
Confidence 997 5788899999999999999999999999888777666655 6899999999999999999874 4556666
Q ss_pred eccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
..+.+........+.+.++ .+|++||.||.|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 6665544444455555544 47899999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-33 Score=248.73 Aligned_cols=268 Identities=21% Similarity=0.402 Sum_probs=209.2
Q ss_pred EeeCCCcEEEEeccCCCe---eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec----------
Q 019006 74 SGSHDRDIFLWHVHGDCK---NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE---------- 140 (347)
Q Consensus 74 s~~~d~~v~~w~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------- 140 (347)
.+..++...+|+...... .+....+|++.|++|+|+|+|++|++|+ |+.|++||+.+++.+..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 455667777887642211 1223347999999999999999999986 89999999998887665532
Q ss_pred --------cCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEecCCcEEEE
Q 019006 141 --------HNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGGIDNDVKVW 211 (347)
Q Consensus 141 --------~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 211 (347)
|...|.++++++++ .++++|+.||.|++||...++.+.... +...|.++.+++++..+++++.++.+++|
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 190 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190 (388)
T ss_dssp -------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccccccCCCCCEEEEEECCCC-Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeee
Confidence 34557788888764 689999999999999999887776665 56789999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc---ccccccceEEEEECCCC
Q 019006 212 DLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH---QHNFEKNLLKCGWSPDG 288 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g 288 (347)
|.++.........+...+....+.+++++|++++.|+.|++||.+.... ...+... .......+.+++|+|++
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL----VERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE----EEEEC------CCCSSCEEEEEECTTS
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCcc----ceeeccccccccCCCCCEEEEEECCCC
Confidence 9998887777766655444444445789999999999999999875332 2222111 11224578999999999
Q ss_pred CEEEEeeCCCeEEEEeCCCcee------------eEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 289 SKVTAGSSDRMVYIWDTTSRRI------------LYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 289 ~~l~sgs~dg~i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++|++|+.||.|++||+.++.. ......|...|.+++|+|++++|++++.||+|++||+
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~ 337 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337 (388)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999876432 3455678999999999999999999999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.6e-34 Score=252.81 Aligned_cols=273 Identities=14% Similarity=0.146 Sum_probs=190.5
Q ss_pred eEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-----eeeEEEeCcccceeEEEE------cC-CCCEEEEe
Q 019006 51 MLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-----KNFMVLKGHKNAILDLHW------TT-DGSQIISA 118 (347)
Q Consensus 51 ~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-----~~~~~~~~h~~~v~~~~~------~~-~~~~l~s~ 118 (347)
...++|.+.|++|++++ ++|+|+|.|++|++|+..... ........|...+..+.. +. ++..++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 35679999999999864 689999999999999964221 122333445544433322 11 23467899
Q ss_pred cCCCeEEEEECCCCceeeeee----------ccCcceeEeecCCC----CCCEEEEEcCCCceEEEeCCCCCce------
Q 019006 119 SPDKTLRAWDVETGKQIKKMA----------EHNSFVNSCCPSRR----GPPLVVSGSDDGTAKLWDMRQRGAI------ 178 (347)
Q Consensus 119 ~~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~~------ 178 (347)
+.||.|++|++........+. .+...+..+.+... ...++++++.||++++||+......
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 999999999976443221111 11222333333222 2357889999999999997532110
Q ss_pred ---------ee----cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE------ecCCCCceeEEEECCCCC
Q 019006 179 ---------QT----FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT------LQGHQDMITGMSLSPDGS 239 (347)
Q Consensus 179 ---------~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~i~~v~~~~~~~ 239 (347)
.. ......+.+++|+|++ ++++|+.||.|++||+++++.... +.+|...|++++|+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 00 1123357899999986 889999999999999998876654 356889999999999999
Q ss_pred EEEEEcCCCc---EEEEeCCCCCCcCceeEEEecc---------ccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 240 YLLTNGMDCK---LCIWDMRPYAPQNRCVKILEGH---------QHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 240 ~l~t~~~d~~---i~~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
+|++++.|++ |++||+.... ++..+... ...+...|.+++|+||+++|++||.|+.|++||+.+
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~----~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred eeeeecCCCCcceeeecccccce----eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 9999998874 8999987532 22222210 011246799999999999999999999999999999
Q ss_pred ceeeEEecCCccCee----eEEEcCCC
Q 019006 308 RRILYKLPGHTGSVN----ESVFHATE 330 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~----~~~~~~~~ 330 (347)
+++++.+++|...|. .++|+|++
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~ 347 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHG 347 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred CCEEEEECCcCCcccCCccEEEECCCC
Confidence 999999999986653 24454443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.1e-33 Score=235.52 Aligned_cols=241 Identities=17% Similarity=0.216 Sum_probs=193.0
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee-ccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA-EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
....+.||.+.|++++|+|++++|++|+.||+|++||+.+++....+. .|...|.++.+.+++ . +++++.|+.+++|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEEEEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-e-eecccceeeEEEe
Confidence 346789999999999999999999999999999999999998877764 578889999888775 3 5567789999999
Q ss_pred eCCCCCcee----ecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcC
Q 019006 171 DMRQRGAIQ----TFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGM 246 (347)
Q Consensus 171 d~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~ 246 (347)
+........ .......+.++++++++..+++++ ++.+++|+.. +...... ...+.+++|+|+++++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~~--~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVPI--SYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEEC--SSCEEEEEECTTSCEEEEEET
T ss_pred ccCCccccccccccccccccccccccccccccccccc-cccccccccc--ccccccc--ccccccccccccccccccccc
Confidence 986543211 112345788999999988766554 5689999854 2222222 335788999999999999999
Q ss_pred CCcEEEEeCCCCCCcCceeE-EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceee---EEecCCccCee
Q 019006 247 DCKLCIWDMRPYAPQNRCVK-ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRIL---YKLPGHTGSVN 322 (347)
Q Consensus 247 d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~---~~~~~h~~~v~ 322 (347)
|+.|++||++... ... ....| ...+.+++|+|++++|++|+.|+.|++||+.++..+ ..+.+|...|.
T Consensus 157 dg~i~~~d~~~~~----~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~ 228 (299)
T d1nr0a2 157 DSKVHVYKLSGAS----VSEVKTIVH----PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 228 (299)
T ss_dssp TSEEEEEEEETTE----EEEEEEEEC----SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred ccccccccccccc----ccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999987421 111 11122 357899999999999999999999999999876544 35678999999
Q ss_pred eEEEcCCCCEEEEecCCCcEEeecC
Q 019006 323 ESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 323 ~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+++|+|++++|++++.|+.|++||+
T Consensus 229 ~l~~s~~~~~l~sgs~dg~i~iwd~ 253 (299)
T d1nr0a2 229 CVSWSPDNVRLATGSLDNSVIVWNM 253 (299)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEET
T ss_pred cccccccccceEEEcCCCEEEEEEC
Confidence 9999999999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-31 Score=228.78 Aligned_cols=247 Identities=21% Similarity=0.418 Sum_probs=208.5
Q ss_pred eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEe
Q 019006 92 NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWD 171 (347)
Q Consensus 92 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd 171 (347)
....++||.+.|++++|+|++.+|+||+.||+|++||+.+++.+..+..|...|.++++.+.+ .++++|+.|+.+++|+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-eeeeeecccceeeccc
Confidence 446789999999999999999999999999999999999999999999999999999998765 5889999999999999
Q ss_pred CCCCCc----eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 172 MRQRGA----IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 172 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
...... ...+.................+.....+.....++............+...+....+.+.+.++++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 765432 2233333333444444456778888899999999988877777777777889999999999999999999
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEe--cCCccCeeeEE
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKL--PGHTGSVNESV 325 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~ 325 (347)
+.|++||++. ..+...+.+|. ..+.+++|+|++++|++|+.||.|++||......+..+ ..|...|..++
T Consensus 206 ~~v~i~d~~~----~~~~~~~~~h~----~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 206 ASAKLWDVRE----GMCRQTFTGHE----SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp TEEEEEETTT----TEEEEEECCCS----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ceEEEEECCC----CcEEEEEeCCC----CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 9999999874 34556666653 57899999999999999999999999999988877654 46677899999
Q ss_pred EcCCCCEEEEecCCCcEEeecC
Q 019006 326 FHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 326 ~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
|+|++++|++++.||.|++||+
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~ 299 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEET
T ss_pred ECCCCCEEEEEECCCEEEEEEC
Confidence 9999999999999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-31 Score=234.22 Aligned_cols=246 Identities=16% Similarity=0.206 Sum_probs=177.6
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce------eeeeeccCcc------eeEeecCCCCCCEEEEEc
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ------IKKMAEHNSF------VNSCCPSRRGPPLVVSGS 162 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~------v~~~~~~~~~~~~~~s~~ 162 (347)
..++|...|.++++++ ++++|+|.|++|++||..+.+. ......+... ............++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4579999999999874 6999999999999999765432 1111122211 111222222234678999
Q ss_pred CCCceEEEeCCCCCceee-----c------CCCCceEEEEEcCC-----CCeEEEEecCCcEEEEeCCCCc---------
Q 019006 163 DDGTAKLWDMRQRGAIQT-----F------PDKYQITAVSFSDA-----SDKIYTGGIDNDVKVWDLRKGE--------- 217 (347)
Q Consensus 163 ~d~~i~iwd~~~~~~~~~-----~------~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--------- 217 (347)
.||.+++|++........ . .....+..+++.++ +.++++++.||.+++||+....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 999999999764332111 0 11234666777654 3578899999999999974321
Q ss_pred ------e---EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccc--cccccceEEEEECC
Q 019006 218 ------V---SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQ--HNFEKNLLKCGWSP 286 (347)
Q Consensus 218 ------~---~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~ 286 (347)
. ......+...+++++|+|++ +|++|+.|+.|++||+... +.+..+.... ..+...|.+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~----~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEEECCC---CCCCCEEEEEECS
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc----ccccccccccccccccceEEEccccc
Confidence 0 11122345668999999987 8999999999999999753 2333332211 12346799999999
Q ss_pred CCCEEEEeeCCC---eEEEEeCCCceeeEEec-------------CCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 287 DGSKVTAGSSDR---MVYIWDTTSRRILYKLP-------------GHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 287 ~g~~l~sgs~dg---~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
||++|++|+.|+ .|++||+.+++.+..+. +|.+.|++++|+|++++|+|+|.|++|+|||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 999999999987 49999999998877664 89999999999999999999999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=7.1e-30 Score=220.61 Aligned_cols=238 Identities=24% Similarity=0.443 Sum_probs=191.5
Q ss_pred EEEeCcccce-eEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeC
Q 019006 94 MVLKGHKNAI-LDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDM 172 (347)
Q Consensus 94 ~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~ 172 (347)
..|+||.+.| ++++| ++++|+||+.||+|++||+.+++.+..+..|...|.++++++. .++++|+.|++|++|+.
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEET
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC--CEEEEEecccccccccc
Confidence 4689999886 55555 5789999999999999999999999999999999999998764 47999999999999999
Q ss_pred CCCCceeecCCC---CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEE-----------------------ecCCC
Q 019006 173 RQRGAIQTFPDK---YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMT-----------------------LQGHQ 226 (347)
Q Consensus 173 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~ 226 (347)
............ .......+.+++..+++++.|+.|++||+++...... ...|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 887766554332 2345667788889999999999999999986543221 11222
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTT 306 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~ 306 (347)
..+ ..+.+++++++++..|+.+++||++.. +.+.....+ ...+..+.|+|++.++++++.|+.|++||..
T Consensus 162 ~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 231 (355)
T d1nexb2 162 ASV--RTVSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGH----TDRIYSTIYDHERKRCISASMDTTIRIWDLE 231 (355)
T ss_dssp SCE--EEEEEETTEEEEEETTSCEEEEETTTT----EEEEEECCC----SSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccc--cccccccceeeeecccceeeeeecccc----cceeeeecc----ccccccccccccceeeecccccceEEeeecc
Confidence 222 344567899999999999999998742 333444333 3457788999999999999999999999999
Q ss_pred CceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 307 SRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 307 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
++..+..+.+|...|..++|++ ++|++++.||+|++||+
T Consensus 232 ~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 270 (355)
T d1nexb2 232 NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 270 (355)
T ss_dssp TCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccc--ceeeeeecccccccccc
Confidence 9999999999999999999975 68999999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-29 Score=216.42 Aligned_cols=241 Identities=27% Similarity=0.468 Sum_probs=185.5
Q ss_pred CCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceE
Q 019006 89 DCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAK 168 (347)
Q Consensus 89 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~ 168 (347)
+.+....++||.+.|.+ +++++|++|+||+.||+|+|||+.+++.+..+..|...|.++.+.+ .++++|+.|++++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLK 80 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceeccccc
Confidence 44556789999999865 3666789999999999999999999999999999999999888864 4899999999999
Q ss_pred EEeCCCCCceeecCCC--------------------Cc-------------------eEEEEEcCCCCeEEEEecCCcEE
Q 019006 169 LWDMRQRGAIQTFPDK--------------------YQ-------------------ITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 169 iwd~~~~~~~~~~~~~--------------------~~-------------------v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+|+............. .. .......+....+++++.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence 9997654322111100 00 01112233456788899999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS 289 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 289 (347)
+||.+..+....+.+|...+..+. +++.++++++.||.|++||++. ..++..+..|. ..+.++++ +++
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~----~~~~~~~~~~~----~~v~~~~~--~~~ 228 (342)
T d2ovrb2 161 VWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVET----GNCIHTLTGHQ----SLTSGMEL--KDN 228 (342)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTT----CCEEEEECCCC----SCEEEEEE--ETT
T ss_pred EeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeeccc----ceeeeEecccc----cceeEEec--CCC
Confidence 999999888889998877665554 4688999999999999999874 34455555553 34555554 567
Q ss_pred EEEEeeCCCeEEEEeCCCceeeEEecC---CccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 290 KVTAGSSDRMVYIWDTTSRRILYKLPG---HTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 290 ~l~sgs~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
+|++|+.||.|++||....+....+.+ |...+..+.|+ +.++++++.||+|++||+
T Consensus 229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEEC
Confidence 999999999999999999888777765 44556666665 569999999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.2e-30 Score=219.08 Aligned_cols=250 Identities=13% Similarity=0.078 Sum_probs=186.8
Q ss_pred eEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCcee---eeeeccCcceeEeecCCCCCCEEEEEcCCCceEE
Q 019006 93 FMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQI---KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKL 169 (347)
Q Consensus 93 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~i 169 (347)
+...++|++.|++|+|+|++++|++|+.||+|+|||+..+... .....|...|.++++.+.+..++++|+.|++|++
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence 3456799999999999999999999999999999998765432 3334688899999998877778999999999999
Q ss_pred EeCCCCCceeecCC--CCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceE----EEecCC--CCceeEEEECCCCCEE
Q 019006 170 WDMRQRGAIQTFPD--KYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVS----MTLQGH--QDMITGMSLSPDGSYL 241 (347)
Q Consensus 170 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~--~~~i~~v~~~~~~~~l 241 (347)
|++........... ........+.++...+++++.++.+++||++..... .....+ ......+.+.+.++.+
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 99987766555432 233445556677889999999999999998654322 222222 2234556777888999
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE-ECCCCCEEEEeeCCCeEEEEeCCCceee---------
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG-WSPDGSKVTAGSSDRMVYIWDTTSRRIL--------- 311 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~g~~l~sgs~dg~i~vwd~~~~~~~--------- 311 (347)
++++.|+.|++||++.......... .... ........ ++.++..+++++.||.+.+|+.......
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIE-ESGL----KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEE-ECSC----SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecCCCcEEEEecccCcccceeee-eccc----ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 9999999999999986543322221 1111 12233333 4567889999999999999987543211
Q ss_pred ------EEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 312 ------YKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 312 ------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
....+|...|++++|+|++++|+|||.||+|++||+
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence 112456778999999999999999999999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=6.9e-30 Score=221.93 Aligned_cols=281 Identities=10% Similarity=0.055 Sum_probs=210.2
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCC--cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCC
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDR--DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVET 131 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 131 (347)
.+|...|.+++|+|+|+.|++++.+. .|++|+..+. ....+..|...|.+++|+|++++|++++.++.+++|++.+
T Consensus 39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 116 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 116 (360)
T ss_dssp CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC--cEEEeeCCCceEEeeeecccccccceeccccccccccccc
Confidence 37999999999999999998776553 7899998643 4456788999999999999999999999999999999999
Q ss_pred CceeeeeeccCcceeEeecCCCCCCEEEE---------EcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEE
Q 019006 132 GKQIKKMAEHNSFVNSCCPSRRGPPLVVS---------GSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s---------~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 202 (347)
++....+..+...+..+++++++..++++ +..++.+++||+.++.......+...+..+.|+|+++.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 98888888888888888888877544333 234556899999988777777777788999999999999999
Q ss_pred ecCCcEEEEeCCCCce-------EEEecCCCCceeEEEECCCCCEEEEEcCCC---cEEEEeCCCCCCcCceeEEEeccc
Q 019006 203 GIDNDVKVWDLRKGEV-------SMTLQGHQDMITGMSLSPDGSYLLTNGMDC---KLCIWDMRPYAPQNRCVKILEGHQ 272 (347)
Q Consensus 203 ~~dg~i~iwd~~~~~~-------~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~ 272 (347)
+.++.+.+||...... ...+..|...+..+.|++++..++++..+. ..++|.+.... .. ...+..+.
T Consensus 197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 273 (360)
T d1k32a3 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GD-YRMIIPLE 273 (360)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BC-EEEEEECS
T ss_pred eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc--Cc-eeEeeecC
Confidence 9999999999765432 233444555556667778777666554432 12233332111 11 11122111
Q ss_pred cccccceEEEEE---CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 273 HNFEKNLLKCGW---SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 273 ~~~~~~~~~~~~---s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+..+.+ ++++.++++++.++.|++||+.+++.. .|.+.|..++|+||++.|++++.||.|++||+
T Consensus 274 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 274 ----SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp ----SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred ----CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 12233333 444557888999999999999887643 34567999999999999999999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-26 Score=193.45 Aligned_cols=233 Identities=21% Similarity=0.389 Sum_probs=187.0
Q ss_pred EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCC
Q 019006 95 VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 174 (347)
Q Consensus 95 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 174 (347)
....|...|++++| ++++|+||+.||+|+|||+.+++.+..+..|...|.++.+. +.++++|+.|+.+++|++..
T Consensus 10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSS
T ss_pred ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccc
Confidence 34577888998765 78999999999999999999999999999999999888763 46899999999999999998
Q ss_pred CCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCc---eEEEecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 175 RGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGE---VSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
+............. ..+.+....++++..++.+++||..... ....+..|...+..+.+. ...+++++.|+.++
T Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 85 GEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 161 (293)
T ss_dssp CCEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred cccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCcee
Confidence 87666555433322 3344566789999999999999987654 344566778888777765 46788999999999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
+||++.. .++..+.++. ..+..+.+ ++.+|++|+.||.|++||+.+...+..+.+|...+.. +.+++.
T Consensus 162 ~~d~~~~----~~~~~~~~~~----~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~ 229 (293)
T d1p22a2 162 VWNTSTC----EFVRTLNGHK----RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNK 229 (293)
T ss_dssp EEETTTC----CEEEEEECCS----SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSS
T ss_pred eecCCCC----cEEEEEcccc----cccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccce
Confidence 9999753 3455555543 23445444 5679999999999999999999999999999988875 566788
Q ss_pred EEEEecCCCcEEeecC
Q 019006 332 VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 332 ~l~s~s~D~~i~i~~~ 347 (347)
+|++++.||.|++||+
T Consensus 230 ~l~sg~~dg~i~iwd~ 245 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDL 245 (293)
T ss_dssp EEEEEETTSCEEEEEH
T ss_pred EEEEEcCCCEEEEEEC
Confidence 9999999999999984
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-27 Score=201.24 Aligned_cols=229 Identities=17% Similarity=0.214 Sum_probs=178.5
Q ss_pred eeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 91 KNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 91 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
+++..+++|..+|++++|+| |+||+.||+|++||+.++. ..|...|..+.+.+. ..+++++.|+++++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA--QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST--TCCEEEETTTEEEET
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC--CeEEEEeeccccccc
Confidence 56778999999999999987 9999999999999987643 467778888777654 357899999999999
Q ss_pred eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC-c
Q 019006 171 DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC-K 249 (347)
Q Consensus 171 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~-~ 249 (347)
++... .....+..+.+++++..++++ .++.+.+|+..+++....+..+. . ..+++++++.+++++.++ .
T Consensus 73 ~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~~~~~~ 142 (287)
T d1pgua2 73 GITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-P--GSAVSLSQNYVAVGLEEGNT 142 (287)
T ss_dssp TEEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-C--EEEEEECSSEEEEEETTTSC
T ss_pred ccccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-e--eeeeeccCcceeeeccccce
Confidence 87532 223456778888876666554 55678899998888777776443 2 345677788888887765 7
Q ss_pred EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeE-EecCCccCeeeEEEcC
Q 019006 250 LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILY-KLPGHTGSVNESVFHA 328 (347)
Q Consensus 250 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~ 328 (347)
+++|++... .....+. ......+.+++|+|++.+|++|+.||.|++||+.+++.+. ++.+|...|.+++|+|
T Consensus 143 v~~~~~~~~----~~~~~~~---~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 143 IQVFKLSDL----EVSFDLK---TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp EEEEETTEE----EEEEECS---SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred eeeeecccc----ceeeeee---eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecc
Confidence 999998632 1111111 1234578999999999999999999999999999987664 5789999999999987
Q ss_pred C----------CCEEEEecCCCcEEeecC
Q 019006 329 T----------EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~----------~~~l~s~s~D~~i~i~~~ 347 (347)
. +.+++|++.|++|+|||+
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~ 244 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSV 244 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEES
T ss_pred cccccccccCCCCeeEeecCCCeEEEEEC
Confidence 5 468999999999999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=1e-23 Score=178.02 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=205.3
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeEeec
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCP 150 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 150 (347)
.++++.|++|.+||+.. .+....+... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+.. ...+.+
T Consensus 5 yV~~~~~~~v~v~D~~t-~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEE
T ss_pred EEEECCCCEEEEEECCC-CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccc
Confidence 45678899999999864 3444455433 457899999999987 5677899999999999998888766554 456777
Q ss_pred CCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEE-EecCCcEEEEeCCCCceEEEecCCCCce
Q 019006 151 SRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYT-GGIDNDVKVWDLRKGEVSMTLQGHQDMI 229 (347)
Q Consensus 151 ~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i 229 (347)
.+++..+++++..++.+.+|+...+.....+.......++.++|++..++. +..++.+.+|+..+......+..+ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence 787777888888999999999999888888887778899999999998764 556788999999998887777654 447
Q ss_pred eEEEECCCCCEEEEEcCC-CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEee---CCCeEEEEeC
Q 019006 230 TGMSLSPDGSYLLTNGMD-CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS---SDRMVYIWDT 305 (347)
Q Consensus 230 ~~v~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs---~dg~i~vwd~ 305 (347)
..+.++|+++++++++.+ +.+.+|+... ......... ......++|++++..++.+. .++.|++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVT----NSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT----TEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred eEEEeeccccceeeecccccccccccccc----eeeeecccc-----cCCcceeeccccccccccccccceeeeeeeeec
Confidence 889999999988887765 5666776553 222222222 23466788999999887654 3468999999
Q ss_pred CCceeeEEecCCccCeeeEEEcCCCCEE-EEecCCCcEEeecC
Q 019006 306 TSRRILYKLPGHTGSVNESVFHATEPVI-GSCSSDKQIYLGEI 347 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~i~i~~~ 347 (347)
.+++++.+++.+ ..+..++|+|+++.| ++++.|++|++||+
T Consensus 232 ~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 999998888754 467999999999865 78889999999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=5e-25 Score=196.41 Aligned_cols=294 Identities=11% Similarity=0.043 Sum_probs=199.3
Q ss_pred CeeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEE---EeCcccceeEEEEcCCCCEEEE-ecCCCe
Q 019006 49 PIMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMV---LKGHKNAILDLHWTTDGSQIIS-ASPDKT 123 (347)
Q Consensus 49 ~~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~---~~~h~~~v~~~~~~~~~~~l~s-~~~dg~ 123 (347)
.+..+..|. .+..++|+|||++|++++.|++|++||+.... ..... ..+|...+.+++|+|||+++++ +..++.
T Consensus 54 ~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~ 132 (426)
T d1hzua2 54 IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 132 (426)
T ss_dssp EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCe
Confidence 345666664 69999999999999999999999999996432 22222 2356677788889999998754 558899
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE-----------eCCCCCc--eeecCCCCceEEE
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW-----------DMRQRGA--IQTFPDKYQITAV 190 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw-----------d~~~~~~--~~~~~~~~~v~~~ 190 (347)
+++||..+++....+..+...+....+.+.+....++.+.|+...++ +...... +...+....+..+
T Consensus 133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
T d1hzua2 133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212 (426)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEE
T ss_pred EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEee
Confidence 99999999887776665544443333333333334444444444444 3332221 2233455668889
Q ss_pred EEcCCCCeEEEEe-cCCcEEEEeCCCCceEEEecCC--CCceeEEEECCCCC--E-EEEEcCCCcEEEEeCCCCCC---c
Q 019006 191 SFSDASDKIYTGG-IDNDVKVWDLRKGEVSMTLQGH--QDMITGMSLSPDGS--Y-LLTNGMDCKLCIWDMRPYAP---Q 261 (347)
Q Consensus 191 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~i~~v~~~~~~~--~-l~t~~~d~~i~~wd~~~~~~---~ 261 (347)
.++|++++++++. .+..+.+++..+++........ ........+...+. . .++.+.|+.+.+|+...... .
T Consensus 213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~ 292 (426)
T d1hzua2 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 292 (426)
T ss_dssp EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB
T ss_pred eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc
Confidence 9999999888776 5567999999988877655432 22223333333322 2 22345688888988754321 2
Q ss_pred CceeEEEeccccccccceEEEEECCCCCEEEE-------eeCCCeEEEEeCCCceeeEEe---------cCCccCeeeEE
Q 019006 262 NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA-------GSSDRMVYIWDTTSRRILYKL---------PGHTGSVNESV 325 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s-------gs~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~ 325 (347)
.+....+.+|. ..+..++|+|||++|++ ++.|++|+|||+.+++..+++ ..|...|..++
T Consensus 293 ~~~~~~l~g~~----~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 293 WKKVAELQGQG----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp TSEEEEEECSS----SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred ceEeEEEecCC----CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence 24556666664 35778899999999994 567899999999998776554 35667799999
Q ss_pred EcCCCCEE-EE----ecCCCcEEeecC
Q 019006 326 FHATEPVI-GS----CSSDKQIYLGEI 347 (347)
Q Consensus 326 ~~~~~~~l-~s----~s~D~~i~i~~~ 347 (347)
|+|+++.+ ++ .+.|+.|.|||.
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred ECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 99999866 33 346899999983
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=8.2e-26 Score=201.62 Aligned_cols=292 Identities=11% Similarity=0.026 Sum_probs=195.8
Q ss_pred eeEecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCC-eeeEE---EeCcccceeEEEEcCCCCEE-EEecCCCeE
Q 019006 50 IMLLTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDC-KNFMV---LKGHKNAILDLHWTTDGSQI-ISASPDKTL 124 (347)
Q Consensus 50 ~~~~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~---~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i 124 (347)
+..+..| ..++.++|+|||++|++++.|+.+++||+.... ..... ..+|...+.+..|+|||++| ++++.++.+
T Consensus 55 ~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v 133 (432)
T d1qksa2 55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133 (432)
T ss_dssp EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence 4456666 469999999999999999999999999985332 22222 23566667777889999986 678889999
Q ss_pred EEEECCCCceeeeeeccC-----------cceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCce--eecCCCCceEEEE
Q 019006 125 RAWDVETGKQIKKMAEHN-----------SFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAI--QTFPDKYQITAVS 191 (347)
Q Consensus 125 ~iwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~ 191 (347)
++||..+++.+..+..+. .....+.+++++..++++...++.|.+||....+.. ..++.......+.
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 999999998877665432 223345667777777888889999999998876543 4455666788999
Q ss_pred EcCCCCeEEEEec-CCcEEEEeCCCCceEEEecC-----CCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCc---
Q 019006 192 FSDASDKIYTGGI-DNDVKVWDLRKGEVSMTLQG-----HQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQ--- 261 (347)
Q Consensus 192 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~--- 261 (347)
|+|+++++++++. ++.+.++|.++++....+.. |........+...+...++.. .++.+.+|+.......
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~ 293 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 293 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccc
Confidence 9999998877764 55789999987766544321 222233334433333333332 3566777765432111
Q ss_pred CceeEEEeccccc---------------------cccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccC
Q 019006 262 NRCVKILEGHQHN---------------------FEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGS 320 (347)
Q Consensus 262 ~~~~~~~~~~~~~---------------------~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~ 320 (347)
.+....+..+... ......++++ ||++.|++++.|+.+++||..++. ++..|...
T Consensus 294 ~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~ 369 (432)
T d1qksa2 294 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPR 369 (432)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCE
T ss_pred cEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCc
Confidence 1111111111000 0001112333 899999999999999999986654 34567788
Q ss_pred eeeEEEcCCCCEEEEe-----cCCCcEEeec
Q 019006 321 VNESVFHATEPVIGSC-----SSDKQIYLGE 346 (347)
Q Consensus 321 v~~~~~~~~~~~l~s~-----s~D~~i~i~~ 346 (347)
|..++|+|+|+.+..+ ..|+.|.|||
T Consensus 370 v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 370 VVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 9999999999877443 2578899987
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=1.8e-24 Score=187.38 Aligned_cols=274 Identities=15% Similarity=0.059 Sum_probs=197.3
Q ss_pred EEEECC-CCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCC--eEEEEECCCCceeeee
Q 019006 62 TMKFNP-AGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDK--TLRAWDVETGKQIKKM 138 (347)
Q Consensus 62 ~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 138 (347)
+..||| +|+++|+++. |.|++|+..+.. ... .+|...|.+++|+|||++|++++.+. .|++||..+++. ..+
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~--~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTY--VLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSB--EEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EEC
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCc--EEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEe
Confidence 467999 9999998875 799999986532 223 37999999999999999998776553 799999988764 456
Q ss_pred eccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEe----------cCCc
Q 019006 139 AEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGG----------IDND 207 (347)
Q Consensus 139 ~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----------~dg~ 207 (347)
..|...+..+++++++ .++++++.++.+++|++.++.....+. +...+.+++|+|++++|+.+. .++.
T Consensus 82 ~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 82 EENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred eCCCceEEeeeecccc-cccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 6788888889998876 578899999999999999888766654 445788899999999998543 3456
Q ss_pred EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCc---CceeEEEeccccccccceEEEEE
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQ---NRCVKILEGHQHNFEKNLLKCGW 284 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 284 (347)
+++||+.+++... +..+...+..++|+|+|++|++++.++.+.+||....... ......+..+. .....+.|
T Consensus 161 ~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 235 (360)
T d1k32a3 161 IHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP----GSPNPTKL 235 (360)
T ss_dssp EEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST----TCCCGGGC
T ss_pred eeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc----CccccceE
Confidence 8999998876544 4446677889999999999999999999999997643211 01111111111 12223456
Q ss_pred CCCCCEEEEeeCCC-----eEEEEeCCCceeeEEecCCccCeeeEEEcCCC---CEEEEecCCCcEEeecC
Q 019006 285 SPDGSKVTAGSSDR-----MVYIWDTTSRRILYKLPGHTGSVNESVFHATE---PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 285 s~~g~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~i~~~ 347 (347)
++++..++++..+. .+..++...+.. ..+..+.+.+..+.+.+.+ .++++++.|+.|++||+
T Consensus 236 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 305 (360)
T d1k32a3 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305 (360)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred CCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence 78887777665442 244455555443 2344455555555555544 47889999999999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=2.5e-21 Score=163.17 Aligned_cols=245 Identities=17% Similarity=0.205 Sum_probs=191.4
Q ss_pred ccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECCCCcee
Q 019006 58 SAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVETGKQI 135 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~ 135 (347)
..+..++|+|+|++| ++++.++.|++||+.. .+....+..|. .+..+.|++++..++ ++..++.+.+|+..+++..
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeeccc-cccccccccccccccccccccceeeecccccceee
Confidence 457899999999977 5677899999999964 45555666665 468899999998655 5567789999999998877
Q ss_pred eeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC-CcEEEEeCC
Q 019006 136 KKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID-NDVKVWDLR 214 (347)
Q Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 214 (347)
..+..+. ....+.+.+++..+++++..++.+.+|+..+...+..+.....+..+.+++++..+++++.+ +.+.+|+..
T Consensus 110 ~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 110 GTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc
Confidence 7765544 44567778888777888889999999999998888888777788999999999988877765 567788877
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEE
Q 019006 215 KGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV 291 (347)
Q Consensus 215 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 291 (347)
..+....+..+ ..+..++|+++++.++.++ .++.|.+||+... +....+..+ ..+..++|+|||++|
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~----~~~~~~~~~-----~~~~~va~spdg~~l 258 (301)
T d1l0qa2 189 TNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----KITARIPVG-----PDPAGIAVTPDGKKV 258 (301)
T ss_dssp TTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----EEEEEEECC-----SSEEEEEECTTSSEE
T ss_pred ceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCC----eEEEEEcCC-----CCEEEEEEeCCCCEE
Confidence 76666655543 4578899999999887654 3468999998743 334444332 347889999999987
Q ss_pred -EEeeCCCeEEEEeCCCceeeEEec
Q 019006 292 -TAGSSDRMVYIWDTTSRRILYKLP 315 (347)
Q Consensus 292 -~sgs~dg~i~vwd~~~~~~~~~~~ 315 (347)
++++.|+.|++||+.+++++.+++
T Consensus 259 ~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 259 YVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeEEEEECCCCeEEEEEe
Confidence 577889999999999999988775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=2.7e-22 Score=171.76 Aligned_cols=264 Identities=12% Similarity=0.097 Sum_probs=190.0
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeC--cccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCc---
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKG--HKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNS--- 143 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 143 (347)
.+|++++.|++|++||+.. .+....+.. +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 4789999999999999964 344555543 34567899999999987 5667899999999999998877655432
Q ss_pred --ceeEeecCCCCCCEEEEEc-----------CCCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCCcEEE
Q 019006 144 --FVNSCCPSRRGPPLVVSGS-----------DDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKV 210 (347)
Q Consensus 144 --~v~~~~~~~~~~~~~~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 210 (347)
....+.+++++..++++.. .+..+.+||..++.....+.....+..++++|++.++++++. .+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 2334566666654433322 467889999998888888777777889999999999998864 4788
Q ss_pred EeCCCCceEEEecCCCCceeEEEECCCCCEE------------------------EEEcCCCcEEEEeCCCCCCcCceeE
Q 019006 211 WDLRKGEVSMTLQGHQDMITGMSLSPDGSYL------------------------LTNGMDCKLCIWDMRPYAPQNRCVK 266 (347)
Q Consensus 211 wd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l------------------------~t~~~d~~i~~wd~~~~~~~~~~~~ 266 (347)
||..+++....+..+... ....+.|++..+ .....++.+.+||...... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 234 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMR 234 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE---EEE
Confidence 999988877766543221 112222322211 1122344577777654321 111
Q ss_pred EEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 267 ILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.... .......+.++|++.+++.+ ++.|++||+.+++.+.++. +...+.+++|+|+++.|++++.|++|++||
T Consensus 235 ~~~~----~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 235 EVRI----MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEE----CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred EecC----CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 1111 13456778899999998876 4789999999999998875 567789999999999999999999999998
Q ss_pred C
Q 019006 347 I 347 (347)
Q Consensus 347 ~ 347 (347)
.
T Consensus 308 ~ 308 (337)
T d1pbyb_ 308 A 308 (337)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=6.7e-22 Score=175.92 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=186.9
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceee--ee---eccCcc
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIK--KM---AEHNSF 144 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~---~~~~~~ 144 (347)
.++++.+.||+|++||+.. .+.+..+..|. .+..++|+|||++|++++.|+++++||+.+++... .+ ..|...
T Consensus 33 ~~~V~~~~dg~v~vwD~~t-~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp EEEEEETTTTEEEEEETTT-CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC-CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 3567888999999999964 35566777764 68999999999999999999999999999886432 22 234455
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC------------CCceEEEEEcCCCCeEEEEec-CCcEEEE
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD------------KYQITAVSFSDASDKIYTGGI-DNDVKVW 211 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 211 (347)
+.+..+++++..+++++..++.+++||............ ......+.+++++..++.... .+.+.++
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 666777788876778888999999999998876654432 223455667777776665443 3556666
Q ss_pred eCCCCce-EEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCC-
Q 019006 212 DLRKGEV-SMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDG- 288 (347)
Q Consensus 212 d~~~~~~-~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g- 288 (347)
+...... ......+...+..+.|+|++++++++. .+..+.++|.... ..+............. ...+.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~ 264 (426)
T d1hzua2 191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTPHPGR--GANFVHPKY 264 (426)
T ss_dssp ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT----EEEEEEECSSCCCCSC--CEEEEETTT
T ss_pred EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc----cEEEEeccCCcccccc--eeeeecCCC
Confidence 6554432 223334566789999999999888776 4567889988742 3333332221111111 11222222
Q ss_pred -CE-EEEeeCCCeEEEEeCCC-------ceeeEEecCCccCeeeEEEcCCCCEEE-------EecCCCcEEeecC
Q 019006 289 -SK-VTAGSSDRMVYIWDTTS-------RRILYKLPGHTGSVNESVFHATEPVIG-------SCSSDKQIYLGEI 347 (347)
Q Consensus 289 -~~-l~sgs~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~-------s~s~D~~i~i~~~ 347 (347)
.. .++.+.|+.+.+|+... .+....+.+|...+..++|+|++++|+ +++.|++|+|||+
T Consensus 265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~ 339 (426)
T d1hzua2 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 339 (426)
T ss_dssp EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence 22 22345677788877644 367788999999999999999999999 5667899999985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=4.8e-22 Score=170.78 Aligned_cols=271 Identities=10% Similarity=0.026 Sum_probs=187.6
Q ss_pred EEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-CcccceeEEEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeec
Q 019006 63 MKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-GHKNAILDLHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 63 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
++|++++++|++++.|++|.+||+.. .+....++ .|...+.+++|+|||+++ ++++.++.|++||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999964 35555555 456678899999999987 5566889999999999988776643
Q ss_pred cCc------ceeEeecCCCCCCEEEEE-----------cCCCceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEE
Q 019006 141 HNS------FVNSCCPSRRGPPLVVSG-----------SDDGTAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 141 ~~~------~v~~~~~~~~~~~~~~s~-----------~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~ 200 (347)
... .+..+.+++++..++++. ..+..+.+||..++.....+ .....+..+.+++++..++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 321 233456677665444432 24677888988765543322 2233455566666665554
Q ss_pred EEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEE--------------------------EcCCCcEEEEe
Q 019006 201 TGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLT--------------------------NGMDCKLCIWD 254 (347)
Q Consensus 201 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t--------------------------~~~d~~i~~wd 254 (347)
+ ++.+.+||..+++....+..+.. ...+.++|++..+.. +..+..+.+||
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred e---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 3 24689999998888777765432 344555665544322 22334455566
Q ss_pred CCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEE
Q 019006 255 MRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIG 334 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 334 (347)
+..... .......+ ...+..+.+++++.+++.+.. +.|++||..+++.+..+. +...+.+++|+|++++|+
T Consensus 237 ~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~ 307 (346)
T d1jmxb_ 237 LKTGKT---HTQEFADL----TELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLY 307 (346)
T ss_dssp TTTCCE---EEEEEEEC----SSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEE
T ss_pred CCCCce---EEEEeecc----cceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEE
Confidence 543211 11111111 245677888999888887765 579999999999887775 455799999999999999
Q ss_pred EecCCCcEEeecC
Q 019006 335 SCSSDKQIYLGEI 347 (347)
Q Consensus 335 s~s~D~~i~i~~~ 347 (347)
+++.|+.|++||.
T Consensus 308 v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 308 LGGTFNDLAVFNP 320 (346)
T ss_dssp EESBSSEEEEEET
T ss_pred EEeCCCcEEEEEC
Confidence 9999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.5e-20 Score=167.15 Aligned_cols=265 Identities=12% Similarity=0.036 Sum_probs=185.2
Q ss_pred CeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce--eeee---eccCcc
Q 019006 70 TVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ--IKKM---AEHNSF 144 (347)
Q Consensus 70 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~~~~~ 144 (347)
-++++.+.||+|.+||... .+....+..| ..+..++|+|||+++++++.|+.+++||+.+++. ...+ ..+...
T Consensus 33 ~~~v~~~d~g~v~v~D~~t-~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp EEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC-CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 3468899999999999864 3455666666 4689999999999999999999999999988653 2232 234455
Q ss_pred eeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC------------CCCceEEEEEcCCCCeEE-EEecCCcEEEE
Q 019006 145 VNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP------------DKYQITAVSFSDASDKIY-TGGIDNDVKVW 211 (347)
Q Consensus 145 v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw 211 (347)
+.+..+++++..++++++.++++++||..+++.+..+. .......+.+++++..++ +...++.|.+|
T Consensus 111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~ 190 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190 (432)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence 55566777777677899999999999999888765542 223467788999988765 56678999999
Q ss_pred eCCCCceEEEec-CCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEecc------------------
Q 019006 212 DLRKGEVSMTLQ-GHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGH------------------ 271 (347)
Q Consensus 212 d~~~~~~~~~~~-~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~------------------ 271 (347)
|..+.+...... .+...+..++|+|+|+++++++. ++.+.++|..... ....+...
T Consensus 191 d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g 266 (432)
T d1qksa2 191 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----LVAIEDTGGQTPHPGRGANFVHPTFG 266 (432)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred EccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce----EEEEeccCccccccCcccceecCCCC
Confidence 998776433222 34456889999999998877765 4578888876321 11111000
Q ss_pred -------------------c---cccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 272 -------------------Q---HNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 272 -------------------~---~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
. ......+....++|++..+++++.++..++|+..+ +..|......+++ |+
T Consensus 267 ~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~------~~~~~~~~~sv~v-pD 339 (432)
T d1qksa2 267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT------LNPEAEISGSVAV-FD 339 (432)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT------TCSSHHHHTCEEE-EE
T ss_pred ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeeccc------CCCCCCeeeEEEE-Ee
Confidence 0 00112345556667777777777777777775443 2234444455555 88
Q ss_pred CCEEEEecCCCcEEeecC
Q 019006 330 EPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 330 ~~~l~s~s~D~~i~i~~~ 347 (347)
++.+++++.|+++++|++
T Consensus 340 g~~la~~s~d~~~k~w~~ 357 (432)
T d1qksa2 340 IKAMTGDGSDPEFKTLPI 357 (432)
T ss_dssp GGGCCCSSSCCCEEEECH
T ss_pred chhhcccccCCceEeccc
Confidence 889999999999999874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5.3e-19 Score=150.95 Aligned_cols=277 Identities=9% Similarity=0.173 Sum_probs=185.0
Q ss_pred eEEEeeCCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEEE-ecCCCeEEEEECCCCceeeeee---ccCcce
Q 019006 71 VIASGSHDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQIIS-ASPDKTLRAWDVETGKQIKKMA---EHNSFV 145 (347)
Q Consensus 71 ~l~s~~~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~---~~~~~v 145 (347)
.+++++.|++|++|++..... .......|...+..|+|+|||++|++ +..|+.|++|++........+. .....+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 457888999999999864322 22333467788999999999999855 4568999999997654333222 233345
Q ss_pred eEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee---cCCCCceEEEEEcCCCCeEEEEec-CCcEEEEeCCCCceEEE
Q 019006 146 NSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT---FPDKYQITAVSFSDASDKIYTGGI-DNDVKVWDLRKGEVSMT 221 (347)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 221 (347)
..+++++++..++++...++.+.+|+......... ..+...+.++.++|+++.++.++. +..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 56788888776666666788999998765543322 234456788899999998887764 45699999866432221
Q ss_pred ------ecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCcCceeEEEecccc--ccccceEEEEECCCCCEEE
Q 019006 222 ------LQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQNRCVKILEGHQH--NFEKNLLKCGWSPDGSKVT 292 (347)
Q Consensus 222 ------~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~ 292 (347)
..........++|++++.+++... ..+...+|+................... ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 122334567899999998877654 5567888887543322222222221111 1123456778999999776
Q ss_pred E-eeCCCeEEEEeCCCceeeEEe---cCCccCeeeEEEcCCCCEEEEec-CCCcEEeecC
Q 019006 293 A-GSSDRMVYIWDTTSRRILYKL---PGHTGSVNESVFHATEPVIGSCS-SDKQIYLGEI 347 (347)
Q Consensus 293 s-gs~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~i~~~ 347 (347)
. +..++.+.+|+........++ ..+...+..++|+|++++|+.++ .+++|.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5 456788999987654433222 23445678999999999776655 5688999853
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=3.6e-18 Score=148.38 Aligned_cols=285 Identities=8% Similarity=-0.017 Sum_probs=186.8
Q ss_pred ecCccccEEEEEECCCCCeEEEe-----eCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec--------
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASG-----SHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS-------- 119 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~-----~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------- 119 (347)
..++.+++..++++|+|+.++.. +.++.|.+||... .+....+..+.. ..++|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-g~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC-CCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccc
Confidence 34688899999999999988764 2345688888753 344555655544 3789999999998875
Q ss_pred --CCCeEEEEECCCCceeeeeeccCcceeE-------eecCCCCCCEEE-EEcCCCceEEEeCCCCCceeecCCCCceEE
Q 019006 120 --PDKTLRAWDVETGKQIKKMAEHNSFVNS-------CCPSRRGPPLVV-SGSDDGTAKLWDMRQRGAIQTFPDKYQITA 189 (347)
Q Consensus 120 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~ 189 (347)
.++.|.+||..+++.+..+..+...... +.+.+++..+++ ....++.+.+|+....+...... ...+
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 169 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---SPTC 169 (373)
T ss_pred cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---ccee
Confidence 4578999999999888776655443322 233333333322 23445667777766554433332 3567
Q ss_pred EEEcCCCCeE-EEEecCCcEEEEeCCCCceEEEecCC------CCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcC
Q 019006 190 VSFSDASDKI-YTGGIDNDVKVWDLRKGEVSMTLQGH------QDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQN 262 (347)
Q Consensus 190 ~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 262 (347)
+.+++++..+ ++.+.|+.+.+||...++.......+ ......+.+.+++. ++..+.++.+.+|+.......
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~- 247 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGAT- 247 (373)
T ss_pred EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEE-
Confidence 8889988755 57889999999999887665544322 12234455666554 455567889999987643211
Q ss_pred ceeEEEeccccc------cccceEEEEECCCCCEE----------EEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEE
Q 019006 263 RCVKILEGHQHN------FEKNLLKCGWSPDGSKV----------TAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVF 326 (347)
Q Consensus 263 ~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l----------~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 326 (347)
........... .......+++++++..+ ++...++.+.+||..+++.+..+. +...+..++|
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~ 325 (373)
T d2madh_ 248 -NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV 325 (373)
T ss_pred -EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence 11111111000 01122334555655544 455667789999999999888775 6677899999
Q ss_pred cCCCC--EEEEecCCCcEEeecC
Q 019006 327 HATEP--VIGSCSSDKQIYLGEI 347 (347)
Q Consensus 327 ~~~~~--~l~s~s~D~~i~i~~~ 347 (347)
+|+++ ++++++.|++|++||+
T Consensus 326 spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 326 AQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEC
Confidence 99998 5578999999999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.9e-19 Score=153.72 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=171.3
Q ss_pred CccccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeCcc-----cceeEEEEcCCCCEEEEec---------
Q 019006 55 GHQSAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKGHK-----NAILDLHWTTDGSQIISAS--------- 119 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~--------- 119 (347)
.+...+.+++|+|||++| ++++.++.|++||+.. .+....+..+. ..+..++|+|+++++++++
T Consensus 31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~ 109 (337)
T d1pbyb_ 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH 109 (337)
T ss_dssp TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence 345567899999999987 5677899999999964 34444444432 3456789999999998776
Q ss_pred ---CCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE--------
Q 019006 120 ---PDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT-------- 188 (347)
Q Consensus 120 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~-------- 188 (347)
.+..+.+||..+++....+... ..+..+.+++++..+ ++++ +.+.+||...++....++......
T Consensus 110 ~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l-~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1pbyb_ 110 FEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKL-YGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185 (337)
T ss_dssp EEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCE-EEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred ccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEE-EEEc--CCcceeeeecCcEEEEeecCCccccceecCCc
Confidence 4578899999998877766543 345566777776554 4554 447889988776655443211111
Q ss_pred ----------------EEEEcCCCCeEEEEecCCcEEEEeCCCCceEE-EecCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 189 ----------------AVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM-TLQGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 189 ----------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
......+......+..++.+.+||..++.... .+..+...+..+.++|++.+++.+ ++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 263 (337)
T d1pbyb_ 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEE
Confidence 11111112222233445568999998877544 344566678889999999988776 47899
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecC
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPG 316 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~ 316 (347)
+||+... +.+..+.. ...+.+++|+|||++|++|+.|+.|++||..+++.+.+++-
T Consensus 264 v~d~~~~----~~~~~~~~-----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 264 SFDLEKN----ASIKRVPL-----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEETTTT----EEEEEEEC-----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCC----cEEEEEcC-----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 9998743 33443332 23567899999999999999999999999999998887653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.1e-17 Score=144.07 Aligned_cols=273 Identities=11% Similarity=0.064 Sum_probs=177.0
Q ss_pred EECCCCCeEEEee-----CCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCCeEEEEE
Q 019006 64 KFNPAGTVIASGS-----HDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDKTLRAWD 128 (347)
Q Consensus 64 ~~~~~~~~l~s~~-----~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd 128 (347)
+.+|+|+.+++.. .++.|++||... .+....+..+. ...++|+|||++|+.++ .|+.|++||
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-g~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCC-CcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 4578999887653 456799999864 34445555443 34789999999887653 478999999
Q ss_pred CCCCceeeeeeccCc-------ceeEeecCCCCCCEEEE-EcCCCceEEEeCCCCCceeecCCCCc--------eEEEEE
Q 019006 129 VETGKQIKKMAEHNS-------FVNSCCPSRRGPPLVVS-GSDDGTAKLWDMRQRGAIQTFPDKYQ--------ITAVSF 192 (347)
Q Consensus 129 ~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~s-~~~d~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~ 192 (347)
..+++.+..+..+.. ....+.+++++..+++. .+.+..+.+||..++..+..+..... ...+.+
T Consensus 85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
T d2bbkh_ 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164 (355)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence 999988776654322 12234566666544333 34567889999998887766554322 223444
Q ss_pred cCCCCeEEEEe-cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc
Q 019006 193 SDASDKIYTGG-IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271 (347)
Q Consensus 193 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 271 (347)
++++..++... .++.+.+++..... ..+...+....+.+++..++.++.++.+.+|++..... ..+.....+
T Consensus 165 ~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~ 237 (355)
T d2bbkh_ 165 CRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEAL 237 (355)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC--EECCCEESS
T ss_pred cCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE--EEEeccCCc
Confidence 55544444322 22334444333221 12334456677888888999999999999999875321 111111111
Q ss_pred ccc------cccceEEEEECCCCCEEEEeeCC----------CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC--EE
Q 019006 272 QHN------FEKNLLKCGWSPDGSKVTAGSSD----------RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP--VI 333 (347)
Q Consensus 272 ~~~------~~~~~~~~~~s~~g~~l~sgs~d----------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l 333 (347)
... .......+++++++..++..+.+ +.|++||..+++.+.++. +...+..++|+|+++ ++
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~ 316 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLY 316 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEE
T ss_pred ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEE
Confidence 100 01122346789999988776543 479999999999888776 345689999999997 56
Q ss_pred EEecCCCcEEeecC
Q 019006 334 GSCSSDKQIYLGEI 347 (347)
Q Consensus 334 ~s~s~D~~i~i~~~ 347 (347)
++++.|++|++||+
T Consensus 317 v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 317 ALSTGDKTLYIHDA 330 (355)
T ss_dssp EEETTTTEEEEEET
T ss_pred EEECCCCEEEEEEC
Confidence 78888999999985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=1.8e-18 Score=148.08 Aligned_cols=254 Identities=12% Similarity=0.103 Sum_probs=168.3
Q ss_pred eEec-CccccEEEEEECCCCCeE-EEeeCCCcEEEEeccCCCeeeEEEeC------cccceeEEEEcCCCCEEEEec---
Q 019006 51 MLLT-GHQSAVYTMKFNPAGTVI-ASGSHDRDIFLWHVHGDCKNFMVLKG------HKNAILDLHWTTDGSQIISAS--- 119 (347)
Q Consensus 51 ~~~~-~h~~~V~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~--- 119 (347)
..+. .|...+.+++|+|||++| +++..++.|++||+... +....+.. +...+..++|+|||++++.++
T Consensus 32 ~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~ 110 (346)
T d1jmxb_ 32 KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 110 (346)
T ss_dssp EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecccccccccCCceEEEEEecCCCEEEEEecCC
Confidence 3343 456678899999999976 56668899999999643 33333322 123456899999999988765
Q ss_pred ---------CCCeEEEEECCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceE
Q 019006 120 ---------PDKTLRAWDVETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQIT 188 (347)
Q Consensus 120 ---------~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~ 188 (347)
.++.+.+|+..+++....+..+ ...+..... ..+..++++ + ..+.+|++.+++.+..+.......
T Consensus 111 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 186 (346)
T d1jmxb_ 111 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVA-G--PDIYKMDVKTGKYTVALPLRNWNR 186 (346)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE-CTTSCEEEE-S--SSEEEECTTTCCEEEEECSTTCCC
T ss_pred cceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe-cCCCEEEEe-C--CcceEEEccCCCEEEEEecCCCcc
Confidence 4678899998877654433322 122222223 233344443 2 458889988777666554332222
Q ss_pred EEEEcCCC--------------------------CeEEEEecCCcEEEEeCCCCceEEE-ecCCCCceeEEEECCCCCEE
Q 019006 189 AVSFSDAS--------------------------DKIYTGGIDNDVKVWDLRKGEVSMT-LQGHQDMITGMSLSPDGSYL 241 (347)
Q Consensus 189 ~~~~~~~~--------------------------~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~~~~~~l 241 (347)
.+.++|++ ..++++..+..+.+||+.++..... ...|...+..+.+++++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (346)
T d1jmxb_ 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266 (346)
T ss_dssp TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence 22233322 2233444556788899887765443 44567778889999998888
Q ss_pred EEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc
Q 019006 242 LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG 319 (347)
Q Consensus 242 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~ 319 (347)
+.... +.+.+||.... +.+..+.. ...+..++|+|||++|++|+.||.|++||..+++.+.+++-+.+
T Consensus 267 ~~~~~-~~v~v~d~~~~----~~~~~~~~-----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 267 IYGVL-NRLAKYDLKQR----KLIKAANL-----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEEEE-SEEEEEETTTT----EEEEEEEC-----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEecC-CeEEEEECCCC----cEEEEEcC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 87664 57999998743 33333332 13477899999999999999999999999999999988875443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=4.9e-16 Score=132.22 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=166.6
Q ss_pred cCccccEEEEEECCCCCeEEE-eeCCCcEEEEeccCCCee--eEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEEEEC
Q 019006 54 TGHQSAVYTMKFNPAGTVIAS-GSHDRDIFLWHVHGDCKN--FMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRAWDV 129 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~ 129 (347)
..|.+.|..|+|+|||++|++ +..|+.|++|++...... ......+...+..++|+|||++|++++. ++.+.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence 368889999999999998855 455899999998643222 2222334456788999999999988875 678999987
Q ss_pred CCCceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee-------ecCCCCceEEEEEcCCCCeEE
Q 019006 130 ETGKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ-------TFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 130 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~ 200 (347)
........ ...+...+..+.+++++..++.....+..+.+|+........ ..........+.|++++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence 76543322 233445556667777776666666677889999987654322 122334567899999998877
Q ss_pred EEe-cCCcEEEEeCCCCc----eEEEec------CCCCceeEEEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEE
Q 019006 201 TGG-IDNDVKVWDLRKGE----VSMTLQ------GHQDMITGMSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKIL 268 (347)
Q Consensus 201 ~~~-~dg~i~iwd~~~~~----~~~~~~------~~~~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~ 268 (347)
... ..+...+|+..... ...... ........+++++++++++.. ..++.+.+|++.............
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 272 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence 654 55677888764322 111211 122345678899999877655 556799999986532221111111
Q ss_pred eccccccccceEEEEECCCCCEEEEee-CCCeEEEE--eCCCcee
Q 019006 269 EGHQHNFEKNLLKCGWSPDGSKVTAGS-SDRMVYIW--DTTSRRI 310 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~g~~l~sgs-~dg~i~vw--d~~~~~~ 310 (347)
. ....+..++|+|||++|++++ .++.|.+| |..++.+
T Consensus 273 ~-----~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 273 P-----TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp E-----CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred C-----CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 1 123456789999999887665 56889998 5566654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=3.5e-16 Score=134.53 Aligned_cols=255 Identities=11% Similarity=0.077 Sum_probs=166.0
Q ss_pred EEEEECCCCCeEEEe----------eCCCcEEEEeccCCCeeeEEEeCcc-------cceeEEEEcCCCCEEEEec--CC
Q 019006 61 YTMKFNPAGTVIASG----------SHDRDIFLWHVHGDCKNFMVLKGHK-------NAILDLHWTTDGSQIISAS--PD 121 (347)
Q Consensus 61 ~~v~~~~~~~~l~s~----------~~d~~v~~w~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~--~d 121 (347)
..++|+|||+.|+++ +.|+.|++||.... +....+..+. .....++|++++++++.++ .+
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC-CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence 368999999988764 34789999998643 3333332221 2235688999999887764 56
Q ss_pred CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-------CCCCceEEEEEcC
Q 019006 122 KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-------PDKYQITAVSFSD 194 (347)
Q Consensus 122 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~ 194 (347)
..+.+|+..+++.+..+......... +......++.+.|+...++........... .....+....+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (355)
T d2bbkh_ 129 PAVGVVDLEGKAFKRMLDVPDCYHIF----PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204 (355)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEE----EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred ceeeeeecCCCcEeeEEecCCcceEe----ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC
Confidence 78999999998887766544322211 111223445556666665554433222111 1122344566777
Q ss_pred CCCeEEEEecCCcEEEEeCCCCceEE--EecCC----------CCceeEEEECCCCCEEEEEcCC----------CcEEE
Q 019006 195 ASDKIYTGGIDNDVKVWDLRKGEVSM--TLQGH----------QDMITGMSLSPDGSYLLTNGMD----------CKLCI 252 (347)
Q Consensus 195 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~----------~~~i~~v~~~~~~~~l~t~~~d----------~~i~~ 252 (347)
++..++.++.++.+++|++..++... ....+ ......+++++++..++....+ +.|.+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 88888999999999999998765422 11111 1223458889999887765433 46999
Q ss_pred EeCCCCCCcCceeEEEeccccccccceEEEEECCCCC--EEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 253 WDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS--KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 253 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
||.... +.+..+.. ...+..++|+|||+ ++++++.|+.|++||..+++++.+++++......+.+.+.
T Consensus 285 ~d~~t~----~~~~~~~~-----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 285 LDAKTG----ERLAKFEM-----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EETTTC----CEEEEEEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EeCCCC----cEEEEecC-----CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 998753 23333322 23467889999997 4567788999999999999999999887666666555543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=3.1e-15 Score=129.54 Aligned_cols=253 Identities=6% Similarity=-0.080 Sum_probs=168.9
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEeCcccce-------eEEEEcCCCCEEEEec--CCC
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLKGHKNAI-------LDLHWTTDGSQIISAS--PDK 122 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~s~~--~dg 122 (347)
.++|+|||+.|++++ .++.|.+||.... +....+..+.... ..+.|+++++.++... .++
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 148 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC-cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence 789999999998875 4578999998643 3333444443322 4578889888766554 456
Q ss_pred eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-----C--CceEEEEEcCC
Q 019006 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-----K--YQITAVSFSDA 195 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~--~~v~~~~~~~~ 195 (347)
.+.+|+....+...... ......+.+.+...+++.+.|+++.+||...+........ . .......++++
T Consensus 149 ~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T d2madh_ 149 AVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence 78899987766544332 2334556677777888999999999999887765543321 1 12334455554
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEE--EecCCC----------CceeEEEECCCCCEE----------EEEcCCCcEEEE
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSM--TLQGHQ----------DMITGMSLSPDGSYL----------LTNGMDCKLCIW 253 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~----------~~i~~v~~~~~~~~l----------~t~~~d~~i~~w 253 (347)
+ .++..+.++.+++|+........ ....+. .....+++++++..+ ++...++.+.+|
T Consensus 225 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 225 G-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred c-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 4 45566678899999987664322 111111 122334555555544 445566788999
Q ss_pred eCCCCCCcCceeEEEeccccccccceEEEEECCCCCE--EEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCC
Q 019006 254 DMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSK--VTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 254 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
|.... +.+..+.. ...+..++|+|||+. +++++.|+.|++||+.+++.+..+.+|......+++-++
T Consensus 304 d~~t~----~~~~~~~~-----~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 304 TGLVG----QTSSQISL-----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ECCCC----cEEEEecC-----CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 98753 23333321 245778999999984 468899999999999999999999988888887777544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=2.9e-14 Score=123.36 Aligned_cols=280 Identities=7% Similarity=-0.060 Sum_probs=172.1
Q ss_pred ccEEEEEECCCCCe---EEEeeCCCcEEE--EeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----------CCC
Q 019006 58 SAVYTMKFNPAGTV---IASGSHDRDIFL--WHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----------PDK 122 (347)
Q Consensus 58 ~~V~~v~~~~~~~~---l~s~~~d~~v~~--w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg 122 (347)
+....++..++++. .+....++...+ ||..+ .+....+..+... .++|+|||+.|+.++ .|+
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence 33344455677764 333556666554 45533 3334444444433 588999999988754 477
Q ss_pred eEEEEECCCCceeeeeeccCc-------ceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEcCC
Q 019006 123 TLRAWDVETGKQIKKMAEHNS-------FVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDA 195 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 195 (347)
.|++||..+++.+..+..+.. ....+.+++++..++++...++.+.+||+.+++....++....... ....
T Consensus 97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~ 174 (368)
T d1mdah_ 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HPGA 174 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EEEE
T ss_pred eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--ccCC
Confidence 899999999988777654321 1234667888877777666789999999998887766543322111 1112
Q ss_pred CCeEEEEecCCcEEEEeCCCCceEEE------ecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEe
Q 019006 196 SDKIYTGGIDNDVKVWDLRKGEVSMT------LQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILE 269 (347)
Q Consensus 196 ~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 269 (347)
...++..+.||.+.++++........ ...+...+..+.+.+++..+.+.+ +.+.++++...... ......
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~--~~~~~~ 250 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGAT--MKAAID 250 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCE--EECCCC
T ss_pred CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceE--EEeecc
Confidence 34566677788888887765432221 122333455677777776665543 44556665432110 000011
Q ss_pred ccccc------cccceEEEEECCCCCEEEEeeC---------CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCC--E
Q 019006 270 GHQHN------FEKNLLKCGWSPDGSKVTAGSS---------DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEP--V 332 (347)
Q Consensus 270 ~~~~~------~~~~~~~~~~s~~g~~l~sgs~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~ 332 (347)
..... .......++++|++..++.... ...|.+||..+++.+.++. +...+..++|+|+++ +
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEE
T ss_pred cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEE
Confidence 10000 0011224668899888766532 2359999999999887775 446789999999986 4
Q ss_pred EEEecCCCcEEeecC
Q 019006 333 IGSCSSDKQIYLGEI 347 (347)
Q Consensus 333 l~s~s~D~~i~i~~~ 347 (347)
+++.+.|++|++||.
T Consensus 330 y~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 330 YANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEES
T ss_pred EEEeCCCCeEEEEEC
Confidence 578888999999984
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=1.8e-14 Score=125.35 Aligned_cols=267 Identities=13% Similarity=0.101 Sum_probs=171.7
Q ss_pred EEEeeCCCcEEEEeccCCCeeeEEEe------------------------------CcccceeEEEEcCCCCEEEEe-cC
Q 019006 72 IASGSHDRDIFLWHVHGDCKNFMVLK------------------------------GHKNAILDLHWTTDGSQIISA-SP 120 (347)
Q Consensus 72 l~s~~~d~~v~~w~~~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~l~s~-~~ 120 (347)
++||+.+|.|++|++... +.+..+. .|.........+|||++|+.. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~-r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSM-RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTT-EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCC-cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 567888888888887532 2222221 133334444457899988554 57
Q ss_pred CCeEEEEECCCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCCCce------------------EEEeCCCCCceeec
Q 019006 121 DKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDDGTA------------------KLWDMRQRGAIQTF 181 (347)
Q Consensus 121 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d~~i------------------~iwd~~~~~~~~~~ 181 (347)
+..|.++|+.+.+....+.. .......+++.+++....+++..+..+ ..+|..+.......
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 88999999999887665542 345566677777665544443333333 44677766665555
Q ss_pred CCCCceEEEEEcCCCCeEEEEecC-----------------------------------------CcEEEEeCCCCceEE
Q 019006 182 PDKYQITAVSFSDASDKIYTGGID-----------------------------------------NDVKVWDLRKGEVSM 220 (347)
Q Consensus 182 ~~~~~v~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~iwd~~~~~~~~ 220 (347)
+.......+.++|+++++++.+.+ +.+.+++....+...
T Consensus 173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 545567788999999988877643 233344444444445
Q ss_pred EecCCCCceeEEEECCCCCEEEE-EcCCCcEEEEeCCCCCC----cCceeEEEeccccccccceEEEEECCCCCEEEEee
Q 019006 221 TLQGHQDMITGMSLSPDGSYLLT-NGMDCKLCIWDMRPYAP----QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGS 295 (347)
Q Consensus 221 ~~~~~~~~i~~v~~~~~~~~l~t-~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs 295 (347)
.+...+. ...+.++|||+++++ +..++++.+||+..... .......+.++. ..--.....+|.++|....+.+
T Consensus 253 ~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~-~~glgplh~~fd~~g~~yts~~ 330 (441)
T d1qnia2 253 YIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP-ELGLGPLHTTFDGRGNAYTTLF 330 (441)
T ss_dssp EECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEET
T ss_pred EEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec-ccccCcccceecCCceEEEccc
Confidence 5555444 578999999998765 56789999999864210 000000111110 0011235568999999999999
Q ss_pred CCCeEEEEeCCC----------ceeeEEe-----cCCccCeeeEEEcCCCCEEEEe---cCCCc
Q 019006 296 SDRMVYIWDTTS----------RRILYKL-----PGHTGSVNESVFHATEPVIGSC---SSDKQ 341 (347)
Q Consensus 296 ~dg~i~vwd~~~----------~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~---s~D~~ 341 (347)
.|.+|..|++.. ...+.++ +||...+...+|+|++++|+++ |.|..
T Consensus 331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccC
Confidence 999999999642 1234444 6888889999999999999999 55543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=9e-14 Score=120.26 Aligned_cols=240 Identities=8% Similarity=-0.013 Sum_probs=154.5
Q ss_pred EEEECCCCCeEEEee----------CCCcEEEEeccCCCeeeEEEeCccc-------ceeEEEEcCCCCEEEEec-CCCe
Q 019006 62 TMKFNPAGTVIASGS----------HDRDIFLWHVHGDCKNFMVLKGHKN-------AILDLHWTTDGSQIISAS-PDKT 123 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~~-~dg~ 123 (347)
.++|+|+|+.|++.+ .|+.|.+||..+. +....+..+.. ....++|+|||++|+.+. .++.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC-cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence 578999999888754 4778999998643 33333332221 234689999999998775 5799
Q ss_pred EEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-------CCCCceEEEEEcCCC
Q 019006 124 LRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-------PDKYQITAVSFSDAS 196 (347)
Q Consensus 124 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~ 196 (347)
+.+||+.+++.+..+..+..... .+.+...+++.+.||++.++++......... .....+....+.+++
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG 223 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence 99999999988777655443321 1223456778889999999987654332111 122234456666665
Q ss_pred CeEEEEecCCcEEEEeCCCCceEEEe--cCC----------CCceeEEEECCCCCEEEEEcCC---------CcEEEEeC
Q 019006 197 DKIYTGGIDNDVKVWDLRKGEVSMTL--QGH----------QDMITGMSLSPDGSYLLTNGMD---------CKLCIWDM 255 (347)
Q Consensus 197 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~----------~~~i~~v~~~~~~~~l~t~~~d---------~~i~~wd~ 255 (347)
..+++ ..+.+++++...+...... ..+ ......+++++++..++....+ ..|.+||.
T Consensus 224 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 224 MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 54443 3456777776654433211 111 1123457888888877654321 35889998
Q ss_pred CCCCCcCceeEEEeccccccccceEEEEECCCCC-E-EEEeeCCCeEEEEeCCCceeeEEecCC
Q 019006 256 RPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGS-K-VTAGSSDRMVYIWDTTSRRILYKLPGH 317 (347)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~-l~sgs~dg~i~vwd~~~~~~~~~~~~h 317 (347)
...+ .+..+.. ...+..++|+|||+ + ++++..|+.|++||..+++.+.+++-.
T Consensus 302 ~t~~----~~~~~~~-----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 302 SVGQ----TSGPISN-----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp SSCC----EEECCEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCCc----EeEEecC-----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 7542 2332221 23567889999997 3 467778999999999999999888743
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.42 E-value=2e-11 Score=108.81 Aligned_cols=81 Identities=7% Similarity=0.112 Sum_probs=65.7
Q ss_pred ecCccccEEEEEECCCCCeEEEeeC---------CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCe
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSH---------DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKT 123 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~---------d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 123 (347)
+.+|...|.++.|||||+.|+.++. ++.+++||+.+. ....+..|...+....|||||++||.. .++.
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~--~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QLITEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC--cccccccCCccccccccccCcceeeEe-eccc
Confidence 4566788999999999999988754 567889999653 344577888899999999999999985 5678
Q ss_pred EEEEECCCCceee
Q 019006 124 LRAWDVETGKQIK 136 (347)
Q Consensus 124 i~iwd~~~~~~~~ 136 (347)
+.+|+..+++...
T Consensus 134 l~~~~~~~g~~~~ 146 (470)
T d2bgra1 134 IYVKIEPNLPSYR 146 (470)
T ss_dssp EEEESSTTSCCEE
T ss_pred ceEEECCCCceee
Confidence 9999988876544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.35 E-value=1.9e-10 Score=99.74 Aligned_cols=223 Identities=11% Similarity=0.072 Sum_probs=144.2
Q ss_pred EEEecCCCeEEEEECCCCceeeeeecc------------------------------CcceeEeecCCCCCCEEEEEcCC
Q 019006 115 IISASPDKTLRAWDVETGKQIKKMAEH------------------------------NSFVNSCCPSRRGPPLVVSGSDD 164 (347)
Q Consensus 115 l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~s~~~d 164 (347)
++|++.+|.|++|++.+++.+..+..- ..........+++..++++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 567888999999999888877665320 00111111234455567778889
Q ss_pred CceEEEeCCCCCcee--ecCCCCceEEEEEcCCCCeE--EEEecCC-----------------cEEEEeCCCCceEEEec
Q 019006 165 GTAKLWDMRQRGAIQ--TFPDKYQITAVSFSDASDKI--YTGGIDN-----------------DVKVWDLRKGEVSMTLQ 223 (347)
Q Consensus 165 ~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l--~~~~~dg-----------------~i~iwd~~~~~~~~~~~ 223 (347)
.+|.++|+.+.+..+ .++.......++|+|+++.. +..+.+. .+..+|..+.+...++.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 999999999887765 44566788999999998854 3333321 23457877777666655
Q ss_pred CCCCceeEEEECCCCCEEEEEcCCC-----------------------------------------cEEEEeCCCCCCcC
Q 019006 224 GHQDMITGMSLSPDGSYLLTNGMDC-----------------------------------------KLCIWDMRPYAPQN 262 (347)
Q Consensus 224 ~~~~~i~~v~~~~~~~~l~t~~~d~-----------------------------------------~i~~wd~~~~~~~~ 262 (347)
.. .....+.|+|+|+++++++.+. .+.+++... .
T Consensus 174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~----~ 248 (441)
T d1qnia2 174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE----S 248 (441)
T ss_dssp ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS----C
T ss_pred cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC----C
Confidence 43 3467899999999988876442 112222110 1
Q ss_pred ceeEEEeccccccccceEEEEECCCCCEEE-EeeCCCeEEEEeCCCceee--------EEecCC---ccCeeeEEEcCCC
Q 019006 263 RCVKILEGHQHNFEKNLLKCGWSPDGSKVT-AGSSDRMVYIWDTTSRRIL--------YKLPGH---TGSVNESVFHATE 330 (347)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~-sgs~dg~i~vwd~~~~~~~--------~~~~~h---~~~v~~~~~~~~~ 330 (347)
..+..++.. .....+.++|||++++ +|..+++|.|||+.+.+.. ..+.++ .-......|.+++
T Consensus 249 ~v~~~IPvg-----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 249 EFTRYIPVP-----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp SSEEEECCB-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred ceEEEEeCC-----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 112222211 2245678999999875 5778999999998653211 011111 1224567899999
Q ss_pred CEEEEecCCCcEEeecC
Q 019006 331 PVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 331 ~~l~s~s~D~~i~i~~~ 347 (347)
..+.|...|.+|.-|++
T Consensus 324 ~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EEEEEETTTTEEEEEEH
T ss_pred eEEEcccccceEEEecc
Confidence 99999999999999974
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=4.4e-09 Score=85.67 Aligned_cols=235 Identities=6% Similarity=-0.046 Sum_probs=148.6
Q ss_pred ceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee
Q 019006 102 AILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT 180 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 180 (347)
.-.+++++++|+..++. +.++.+..++...................+++.+.+ .++++....+.+++++......+..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeeee
Confidence 34789999999966654 455777777654432221111111122334555543 5777777777777666554444433
Q ss_pred cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCC
Q 019006 181 FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAP 260 (347)
Q Consensus 181 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 260 (347)
.........++++++++.+++-..+..+..++............-.....++++.++++.+++...++.|..+|.....
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~- 172 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN- 172 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-
T ss_pred eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce-
Confidence 3334567899999998877776667778888765543322222223446789999999988888888899999875321
Q ss_pred cCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCC
Q 019006 261 QNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDK 340 (347)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 340 (347)
....... . ......+++.++|.++++....+.|..++.............-.....+++++++.++++-..++
T Consensus 173 ----~~~~~~~--~-~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 173 ----QVVLPFT--D-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp ----EEECCCS--S-CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred ----eeeeecc--c-cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence 1111111 1 13467888999999998888889999998765432221122234568999999999888877777
Q ss_pred cEEee
Q 019006 341 QIYLG 345 (347)
Q Consensus 341 ~i~i~ 345 (347)
.|+..
T Consensus 246 rI~~i 250 (260)
T d1rwia_ 246 RVVKL 250 (260)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.28 E-value=1e-10 Score=104.04 Aligned_cols=139 Identities=9% Similarity=0.062 Sum_probs=101.5
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEe-----CcccceeEEEEcCCCCEEEEec---------CCCeEEEE
Q 019006 62 TMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLK-----GHKNAILDLHWTTDGSQIISAS---------PDKTLRAW 127 (347)
Q Consensus 62 ~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~---------~dg~i~iw 127 (347)
.+.|.++++++.. .|+.+.+||..+.... ..+. .|...|.++.|||||++|+.++ .++.+.+|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEE-EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEE-EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 5679999987764 5788999999754332 3333 4457899999999999999874 35678999
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCC-------------------CCceE
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPD-------------------KYQIT 188 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~v~ 188 (347)
|+.+++ +..+..+...+....++|++..++. ..++.+.+|+...+...+.... .....
T Consensus 98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~--~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAY--VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEE--EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred ECCCCc-ccccccCCccccccccccCcceeeE--eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 999876 4556677778888889998876544 3567899999887765543321 11245
Q ss_pred EEEEcCCCCeEEEEecCC
Q 019006 189 AVSFSDASDKIYTGGIDN 206 (347)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg 206 (347)
.+.|+|+++.++....|.
T Consensus 175 ~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp CEEECTTSSEEEEEEEEC
T ss_pred ccEECCCCCccceeEecC
Confidence 678999999999876543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=7.7e-09 Score=88.57 Aligned_cols=247 Identities=12% Similarity=0.131 Sum_probs=138.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeee--ccCcceeEeecCCCCCCEEEEEc--CCCceEEEeCCC-
Q 019006 100 KNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMA--EHNSFVNSCCPSRRGPPLVVSGS--DDGTAKLWDMRQ- 174 (347)
Q Consensus 100 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~- 174 (347)
...+..|+|++++++|+++.. +.+..|.+.....+.... ........+...+++..++++.. ..+.+..+.+..
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence 345677999999999988754 567777665432222211 11122223444444443333322 234444443221
Q ss_pred -----------CCce----e--ecCCCCceEEEEEcCCCCeEEEEec-CCcEEEEeCCC-CceE--EEe--cCCCCceeE
Q 019006 175 -----------RGAI----Q--TFPDKYQITAVSFSDASDKIYTGGI-DNDVKVWDLRK-GEVS--MTL--QGHQDMITG 231 (347)
Q Consensus 175 -----------~~~~----~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~ 231 (347)
.... . ..+....+.++.|+|++++++++.. ...|.+|+... +... ... .........
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~ 197 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence 1111 0 1122234778999999998887764 45788887643 2221 111 122345788
Q ss_pred EEECCCCCEEEEEc-CCCcEEEEeCCCCCCcC-ceeEEEeccc----------cccccceEEEEECCCCCEEEEeeC---
Q 019006 232 MSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQN-RCVKILEGHQ----------HNFEKNLLKCGWSPDGSKVTAGSS--- 296 (347)
Q Consensus 232 v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~sgs~--- 296 (347)
++|+|+++++.+.. .+++|.+||+....... .......... .........+.++|||++|+++..
T Consensus 198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~ 277 (365)
T d1jofa_ 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence 99999999886554 57899999986432111 0111111000 001123456789999999987642
Q ss_pred ---CCeEEEEeCCCceee------EEecCCccCeeeEEEcC-CCCEEE-EecCCCcEEeecC
Q 019006 297 ---DRMVYIWDTTSRRIL------YKLPGHTGSVNESVFHA-TEPVIG-SCSSDKQIYLGEI 347 (347)
Q Consensus 297 ---dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~-~~~~l~-s~s~D~~i~i~~~ 347 (347)
.+.|..|+......+ .......+....++|+| ++++|+ +...+++|.+|++
T Consensus 278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 234777776543222 12223345678899998 788665 4457899999863
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=3.7e-08 Score=80.12 Aligned_cols=219 Identities=13% Similarity=0.162 Sum_probs=126.7
Q ss_pred cCccccEEEEEECCCCCeEEEeeCCC-c--EEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecC-CCeEEE--E
Q 019006 54 TGHQSAVYTMKFNPAGTVIASGSHDR-D--IFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASP-DKTLRA--W 127 (347)
Q Consensus 54 ~~h~~~V~~v~~~~~~~~l~s~~~d~-~--v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~i--w 127 (347)
..+...+..-+|||||+.||-..... . +.+.+..+ .....+..+........|+|+|+.++.... ++...+ +
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc--CceeEEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence 34566788999999999998654433 2 44444433 333455667778889999999998886553 333222 2
Q ss_pred ECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCCCCceeecCCCCceEEEEEcCCCCeEEEEecC
Q 019006 128 DVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 128 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
........ .....................+++...++...+| ++...................++|++..++..+.+
T Consensus 113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 113 DLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp ETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred ccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeec
Confidence 22222222 1212222222223344444456666666655444 55554444444445567778999999988876654
Q ss_pred C-c--EEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccce
Q 019006 206 N-D--VKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNL 279 (347)
Q Consensus 206 g-~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (347)
+ . +.+.|...+.. .+..+........|+|||++|+-.+ ....|.++++.... ...+... ...+
T Consensus 192 ~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-----~~~lt~~----~g~~ 260 (269)
T d2hqsa1 192 GGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-----KARLPAT----DGQV 260 (269)
T ss_dssp SSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-----EEECCCS----SSEE
T ss_pred CCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-----EEEEeCC----CCcE
Confidence 4 3 45556555443 3333445567789999999887443 33468888876321 1222221 2346
Q ss_pred EEEEECC
Q 019006 280 LKCGWSP 286 (347)
Q Consensus 280 ~~~~~s~ 286 (347)
...+|||
T Consensus 261 ~~p~WSP 267 (269)
T d2hqsa1 261 KFPAWSP 267 (269)
T ss_dssp EEEEECC
T ss_pred EeEEeCC
Confidence 6777888
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.20 E-value=1e-07 Score=79.74 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCC----CceEEEeCCCCCc
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDD----GTAKLWDMRQRGA 177 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~ 177 (347)
.+..++|.++|++.++-..++.|..|+.+++.....+.........+++.+++ .++++...+ +.+...+......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCcee
Confidence 34578899999877777788999999887765554444444445566676665 455554322 2344444444433
Q ss_pred eeecC---CCCceEEEEEcCCCCeEEEEec------CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEE-EEEcCC
Q 019006 178 IQTFP---DKYQITAVSFSDASDKIYTGGI------DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYL-LTNGMD 247 (347)
Q Consensus 178 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l-~t~~~d 247 (347)
..... .....+.+.++++|+..++... .+.+..++...... ..+...-...+.++|+|+++.| ++-...
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecccC
Confidence 32222 2345788999999986655322 12355555543322 2222222345789999999866 455667
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEec------CCccCe
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLP------GHTGSV 321 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~------~h~~~v 321 (347)
+.|..||+..........................+++.++|++.++....+.|.+||. .++++.++. ++...+
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~ 277 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS 277 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCcee
Confidence 8999999864221111111100000000112456889999999888889999999996 577777664 344567
Q ss_pred eeEEEcCCCCEEEEecC
Q 019006 322 NESVFHATEPVIGSCSS 338 (347)
Q Consensus 322 ~~~~~~~~~~~l~s~s~ 338 (347)
.+++|.+....+..++.
T Consensus 278 ~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 278 THPQFIPGTNQLIICSN 294 (319)
T ss_dssp CEEEECTTSCEEEEEEE
T ss_pred eeEEEeCCCCEEEEEcC
Confidence 89999998877666544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.19 E-value=8.4e-08 Score=80.10 Aligned_cols=241 Identities=10% Similarity=0.062 Sum_probs=146.8
Q ss_pred ceeEEEEcCCCCEEEEecC-------CCeEEEEECCCCceeeeeecc----CcceeEeecCCCCCCEEEEEcCCCceEEE
Q 019006 102 AILDLHWTTDGSQIISASP-------DKTLRAWDVETGKQIKKMAEH----NSFVNSCCPSRRGPPLVVSGSDDGTAKLW 170 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~~~d~~i~iw 170 (347)
....++|.++|+.+++... ++.|..||..++......... ......+.+.+++. +++.+...+.+..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEE
Confidence 3466789999987776433 467888888876543322111 11233456666554 44445555667788
Q ss_pred eCCCCCceeecC-CC----CceEEEEEcCCCCeEEEEec---------------CCcEEEEeCCCCceEEEecCCCCcee
Q 019006 171 DMRQRGAIQTFP-DK----YQITAVSFSDASDKIYTGGI---------------DNDVKVWDLRKGEVSMTLQGHQDMIT 230 (347)
Q Consensus 171 d~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~i~ 230 (347)
|........... .. ...+.+++++++...++-.. .|.|+.++.. ++.... ...-..-+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~-~~~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEe-eCCcceee
Confidence 876443221111 11 13577899999877665321 2345555432 332222 22223357
Q ss_pred EEEECCCCC-----EEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeC
Q 019006 231 GMSLSPDGS-----YLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT 305 (347)
Q Consensus 231 ~v~~~~~~~-----~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~ 305 (347)
.++|+|++. .+++-+..+.|..||+...... ...+.+.............+++..+|++.++....+.|++||.
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCcccc-ceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 899988764 4455567788999987532111 0001111111111123456788999999888888899999999
Q ss_pred CCceeeEEecCCccCeeeEEEcCCCC-EEEEecCCCcEEeec
Q 019006 306 TSRRILYKLPGHTGSVNESVFHATEP-VIGSCSSDKQIYLGE 346 (347)
Q Consensus 306 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~i~~ 346 (347)
+.++.+..+..+...+.+++|.|+++ +.+|.+.++.|+-.+
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~ 296 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 98888777776667889999999986 667888889888765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=1.1e-07 Score=78.03 Aligned_cols=233 Identities=12% Similarity=0.216 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCc------ceeEeecCCCCCCE-EEEEcCCCceEEEeCCCC
Q 019006 103 ILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNS------FVNSCCPSRRGPPL-VVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 103 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~-~~s~~~d~~i~iwd~~~~ 175 (347)
-..|+++++++.+++-..+..|++||.+ ++.+..+..... .............. ++..+.++.|..++.. +
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g 102 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G 102 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence 4788999999888887788899999865 555554422110 11122222222223 3334455667777653 3
Q ss_pred CceeecC--CCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe--cCCCCceeEEEECCCCCEEEEEcCCCcEE
Q 019006 176 GAIQTFP--DKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL--QGHQDMITGMSLSPDGSYLLTNGMDCKLC 251 (347)
Q Consensus 176 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~v~~~~~~~~l~t~~~d~~i~ 251 (347)
.....+. .......+++.+++..+++....+.+.+++.. ++....+ ..+......+++.++++.+++....+.|.
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence 4444432 23456788999988888877777888888854 5555544 34455678899999999888888889999
Q ss_pred EEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC-CCeEEEEeCCCceeeEEecC--CccCeeeEEEcC
Q 019006 252 IWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS-DRMVYIWDTTSRRILYKLPG--HTGSVNESVFHA 328 (347)
Q Consensus 252 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~-dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~ 328 (347)
+||.. ...+..+... ........+++.++|+.+++-+. ++.|.+|+. +++.+..+.. .......+++.|
T Consensus 182 ~~d~~-----G~~~~~~g~~--g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 182 VFNYE-----GQYLRQIGGE--GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEETT-----CCEEEEESCT--TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred eeecC-----Cceeeeeccc--ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 99864 2333333211 11234678899999998877554 457999985 5776666543 234678999999
Q ss_pred CCCEEEEecCCCcEEeecC
Q 019006 329 TEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 329 ~~~~l~s~s~D~~i~i~~~ 347 (347)
++.++++ +.++.|+++++
T Consensus 254 dG~l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 254 DGSVVLA-SKDYRLYIYRY 271 (279)
T ss_dssp TTEEEEE-ETTTEEEEEEC
T ss_pred CCcEEEE-eCCCeEEEEEe
Confidence 9987665 57899999864
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=6.9e-08 Score=78.44 Aligned_cols=237 Identities=16% Similarity=0.191 Sum_probs=141.7
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC---CeEEEEECCCCceeeeeeccCcceeEeecCCCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD---KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPP 156 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (347)
.|++.|.++. ....+..+...+.+-+|||||++||-...+ ..+.+.+...+.. ..+..+........+++++..
T Consensus 20 ~l~i~d~dG~--~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCC--CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCe
Confidence 4666666543 233444456678889999999999865433 2466666665543 344445555666777787766
Q ss_pred EEEEEcCCCceEEEeCC--CCCceeecCCCCceEEEEEcCCCCeEEE-EecCCc--EEEEeCCCCceEEEecCCCCceeE
Q 019006 157 LVVSGSDDGTAKLWDMR--QRGAIQTFPDKYQITAVSFSDASDKIYT-GGIDND--VKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 157 ~~~s~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
++.....++...++... ..................+++++..++. ...++. |.+.++..+.. ..+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence 66655555554444332 2222233333334455566777665554 444554 55566655533 233334556677
Q ss_pred EEECCCCCEEEEEcCC-CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC---CCeEEEEeCCC
Q 019006 232 MSLSPDGSYLLTNGMD-CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS---DRMVYIWDTTS 307 (347)
Q Consensus 232 v~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~---dg~i~vwd~~~ 307 (347)
..|+|+++.++..+.+ +...+|....... ....+.. ........|||||++|+..+. ...|+++++..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~-----~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSS-----TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCC-----SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred cccccccceeEEEeecCCceeeeEeecccc---cceEeec-----CccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 8999999988876554 4444444332111 1122211 123456789999999985543 34689999987
Q ss_pred ceeeEEecCCccCeeeEEEcCC
Q 019006 308 RRILYKLPGHTGSVNESVFHAT 329 (347)
Q Consensus 308 ~~~~~~~~~h~~~v~~~~~~~~ 329 (347)
+.. .++....+.+...+|+|-
T Consensus 248 ~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 248 RFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CCE-EECCCSSSEEEEEEECCC
T ss_pred CCE-EEEeCCCCcEEeEEeCCC
Confidence 654 567777788889999983
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=5.1e-08 Score=79.13 Aligned_cols=240 Identities=9% Similarity=0.055 Sum_probs=149.3
Q ss_pred ccccEEEEEECCCCCeEEE-eeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce
Q 019006 56 HQSAVYTMKFNPAGTVIAS-GSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ 134 (347)
Q Consensus 56 h~~~V~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 134 (347)
+....+.|+++++|.+.++ .+..+.+..++..+.........+. .....++++++++.+++...++.+++++-.+...
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence 3456789999999997665 4556777777664433222222221 2357788999998888877777777766554444
Q ss_pred eeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceee-cCCCCceEEEEEcCCCCeEEEEecCCcEEEEeC
Q 019006 135 IKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQT-FPDKYQITAVSFSDASDKIYTGGIDNDVKVWDL 213 (347)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 213 (347)
+..... ......++..+.+ .++++-..+..+..++......... .........++++++++.+++...++.|..+|.
T Consensus 91 ~~~~~~-~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeeee-eeecccccccccc-eeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence 332221 2233455555544 4666655566666666544332221 122235678899999988788788889999998
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE
Q 019006 214 RKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA 293 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 293 (347)
..................|++.++|+.+++....+.|..++.... ....+... . -.....++++++|.++++
T Consensus 169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-----~~~~~~~~--~-~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-----TSTVLPFT--G-LNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS-----CCEECCCC--S-CCCEEEEEECTTCCEEEE
T ss_pred ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC-----eEEEEccC--C-CCCeEEEEEeCCCCEEEE
Confidence 755443332234455788999999998888888888888875421 11111111 1 124568889999988887
Q ss_pred eeCCCeEEEEeCC
Q 019006 294 GSSDRMVYIWDTT 306 (347)
Q Consensus 294 gs~dg~i~vwd~~ 306 (347)
-..++.|+.++..
T Consensus 241 d~~~~rI~~i~~~ 253 (260)
T d1rwia_ 241 DRGNDRVVKLTSL 253 (260)
T ss_dssp EGGGTEEEEECCC
T ss_pred ECCCCEEEEEeCC
Confidence 7777778777654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=8.5e-08 Score=79.64 Aligned_cols=227 Identities=9% Similarity=0.069 Sum_probs=144.8
Q ss_pred cEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCce-eee
Q 019006 59 AVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQ-IKK 137 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~ 137 (347)
.+..++++|+|+++++...+++|+.|+..+... .+......+.+++|+++|+++++...++.+..|+...... ...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence 578999999999999999999999988765433 3344556789999999999988888888888887654321 112
Q ss_pred ee--ccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec-----------CCCCceEEEEEcCCCCeEEEEec
Q 019006 138 MA--EHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF-----------PDKYQITAVSFSDASDKIYTGGI 204 (347)
Q Consensus 138 ~~--~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~ 204 (347)
+. ......+.+.+.+.+ .++++-+.++.+..+|...+...... ........+.++. +..+++.+.
T Consensus 106 ~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~ 183 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE 183 (302)
T ss_dssp EEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred ccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC
Confidence 21 123345556665554 56777777788888887654321110 1112345566653 334456667
Q ss_pred CCcEEEEeCCCCceEE--EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 205 DNDVKVWDLRKGEVSM--TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
.+.|+.++........ ...........+++.++|++.++...++.|..++.. .......... .. ......+
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-----G~~~~~~~~~-~~-~~~pt~v 256 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-----RSTTIIAQAE-QG-VIGSTAV 256 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-----CCEEEEECGG-GT-CTTEEEE
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-----CCEEEEEecC-CC-CCCceEE
Confidence 8889888876532211 111122346789999999988888888889888753 2211111111 11 1346788
Q ss_pred EE---CCCCCEEEEeeCC
Q 019006 283 GW---SPDGSKVTAGSSD 297 (347)
Q Consensus 283 ~~---s~~g~~l~sgs~d 297 (347)
+| ++|++.|+.++..
T Consensus 257 afg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 257 AFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EECCSTTTTTEEEEEECT
T ss_pred EEcCCCCCCCEEEEECCC
Confidence 99 6788888766554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.10 E-value=2.1e-07 Score=77.20 Aligned_cols=224 Identities=11% Similarity=0.080 Sum_probs=146.7
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCc----
Q 019006 102 AILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGA---- 177 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---- 177 (347)
.+..++++|||+++++...+++|..|+.... ...+......+..+++.+++ .++++...++.+..++......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceee
Confidence 4678899999999999999999988886543 23344455667778887775 5778888888888887653321
Q ss_pred eeecCCCCceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecC----------CCCceeEEEECCCCCEEEEEcCC
Q 019006 178 IQTFPDKYQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQG----------HQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 178 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
+...+.....+.+.+.++++.+++.+.++.+..+|...+........ .......+.+.. +..+++....
T Consensus 106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~ 184 (302)
T d2p4oa1 106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK 184 (302)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence 22233445678899999998888888888999999887654332211 112345666653 3445566677
Q ss_pred CcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCcee-eEEecCCccCeeeEEE
Q 019006 248 CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI-LYKLPGHTGSVNESVF 326 (347)
Q Consensus 248 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~ 326 (347)
+.|..++......... ....... .....++++++|.+.++...++.|..++...+.. +......-...+.++|
T Consensus 185 ~~i~~~~~~~~~~~~~-~~~~~~~-----~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGE-PEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp TEEEEEEBCTTSCBCC-CEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred CeEEeccccccccccc-cccccCC-----CCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 8888888764322111 1111111 1234578999999988888899999998764432 2333333345789999
Q ss_pred ---cCCCCEEEE
Q 019006 327 ---HATEPVIGS 335 (347)
Q Consensus 327 ---~~~~~~l~s 335 (347)
+++++.|..
T Consensus 259 g~~~~D~~~Lyv 270 (302)
T d2p4oa1 259 GQTEGDCTAIYV 270 (302)
T ss_dssp CCSTTTTTEEEE
T ss_pred cCCCCCCCEEEE
Confidence 667775543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.10 E-value=4.5e-08 Score=83.66 Aligned_cols=249 Identities=9% Similarity=0.012 Sum_probs=143.5
Q ss_pred cccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEE-eCcccceeEEEEcCCCCEE--EEec-CCCeEEEEECCCC
Q 019006 57 QSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVL-KGHKNAILDLHWTTDGSQI--ISAS-PDKTLRAWDVETG 132 (347)
Q Consensus 57 ~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l--~s~~-~dg~i~iwd~~~~ 132 (347)
...+.-|+|+|++++|.++.. +.+..|.+..+....... .........+.++++++.+ +++. ..+.+..+.+...
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence 344556999999999987765 567778775443322111 1112234566778888743 3332 2355555443221
Q ss_pred -ce-----------ee-e----eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCcee------ecCCCCceEE
Q 019006 133 -KQ-----------IK-K----MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQ------TFPDKYQITA 189 (347)
Q Consensus 133 -~~-----------~~-~----~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~------~~~~~~~v~~ 189 (347)
.. .. . .......+..+.+++++..++++......|.+|+......+. ..........
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~ 197 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence 10 00 0 011223456788888887677766666788888765433221 1223456888
Q ss_pred EEEcCCCCeEEEEe-cCCcEEEEeCCCCceE--EEec-----------------CCCCceeEEEECCCCCEEEEEcC---
Q 019006 190 VSFSDASDKIYTGG-IDNDVKVWDLRKGEVS--MTLQ-----------------GHQDMITGMSLSPDGSYLLTNGM--- 246 (347)
Q Consensus 190 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~~-----------------~~~~~i~~v~~~~~~~~l~t~~~--- 246 (347)
+.|+|+++++++.. .+++|.+|++...+.. .... .+......+.++|+|++|+++..
T Consensus 198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~ 277 (365)
T d1jofa_ 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence 99999999887655 5788999998655321 1110 01112457899999999988742
Q ss_pred ---CCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECC-CCCEEEEe-eCCCeEEEEeCCCc
Q 019006 247 ---DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSP-DGSKVTAG-SSDRMVYIWDTTSR 308 (347)
Q Consensus 247 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg-s~dg~i~vwd~~~~ 308 (347)
...|..|++................ ..-.....++++| +|++|+++ ..++.|.+|+....
T Consensus 278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 278 FELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CccceEEEEEEecCCCceeeEeEeeEEE--cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 2237777765422111111111100 0012345577898 89987665 56789999976544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=6.7e-07 Score=73.13 Aligned_cols=237 Identities=15% Similarity=0.266 Sum_probs=148.9
Q ss_pred ccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeC------cccceeEEEEcCCC-CEEEE-ecCCCeEEEEEC
Q 019006 58 SAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKG------HKNAILDLHWTTDG-SQIIS-ASPDKTLRAWDV 129 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~------h~~~v~~~~~~~~~-~~l~s-~~~dg~i~iwd~ 129 (347)
.....|+++++|+++++-...+.|++|+..++.. ..+.. ....-..+++..+. ..+++ .+.++.|..++.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEE--EEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 3578999999999888877788899999865422 22211 11123455555543 34443 345567777775
Q ss_pred CCCceeeeeecc-CcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec---CCCCceEEEEEcCCCCeEEEEecC
Q 019006 130 ETGKQIKKMAEH-NSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF---PDKYQITAVSFSDASDKIYTGGID 205 (347)
Q Consensus 130 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 205 (347)
.++....+... ......++..+.+ .++++....+.+.+++.. ++.+..+ ........++++++++.+++....
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~ 177 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 177 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence 34444444221 2223344444443 466666666677777754 3334433 223457788899988888888888
Q ss_pred CcEEEEeCCCCceEEEec--CCCCceeEEEECCCCCEEEEEcC-CCcEEEEeCCCCCCcCceeEEEeccccccccceEEE
Q 019006 206 NDVKVWDLRKGEVSMTLQ--GHQDMITGMSLSPDGSYLLTNGM-DCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKC 282 (347)
Q Consensus 206 g~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (347)
+.|++||.. ++...++. +......+|++.++|+.+++-.. ++.|.+|+.. +..+..+..... ......+
T Consensus 178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-----G~~~~~~~~~~~--~~~p~~v 249 (279)
T d1q7fa_ 178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----GQLISALESKVK--HAQCFDV 249 (279)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----SCEEEEEEESSC--CSCEEEE
T ss_pred cceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-----CCEEEEEeCCCC--CCCEeEE
Confidence 999999964 55555553 34456789999999997777544 4579999843 344444432211 1246788
Q ss_pred EECCCCCEEEEeeCCCeEEEEeCCCc
Q 019006 283 GWSPDGSKVTAGSSDRMVYIWDTTSR 308 (347)
Q Consensus 283 ~~s~~g~~l~sgs~dg~i~vwd~~~~ 308 (347)
++.|||.+++ ++.++.|++|.....
T Consensus 250 av~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 250 ALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEETTTEEEE-EETTTEEEEEECSCC
T ss_pred EEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 8999997555 557889999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.97 E-value=1.9e-06 Score=71.65 Aligned_cols=240 Identities=11% Similarity=0.116 Sum_probs=136.7
Q ss_pred ccEEEEEECCCCCeEEEeeC-------CCcEEEEeccCCCeeeEEE---eCcccceeEEEEcCCCCEEEEecCCCeEEEE
Q 019006 58 SAVYTMKFNPAGTVIASGSH-------DRDIFLWHVHGDCKNFMVL---KGHKNAILDLHWTTDGSQIISASPDKTLRAW 127 (347)
Q Consensus 58 ~~V~~v~~~~~~~~l~s~~~-------d~~v~~w~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 127 (347)
.....++|.|+|+++++... ++.|..|+..+........ ......-..++|.++++.|+++.....+...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 34567789999998876433 4678888876443222111 1111234679999999988888777778888
Q ss_pred ECCCCceeeeeeccC----cceeEeecCCCCCCEEEEEcC---------------CCceEEEeCCCCCceeecCCCCceE
Q 019006 128 DVETGKQIKKMAEHN----SFVNSCCPSRRGPPLVVSGSD---------------DGTAKLWDMRQRGAIQTFPDKYQIT 188 (347)
Q Consensus 128 d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~v~ 188 (347)
+.+............ ...+++.+.+.+ .+.++-.. .|.+..++.. ++.......-...+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceee
Confidence 876543221111111 113344554443 34333211 1122222221 11111111112345
Q ss_pred EEEEcCCCC----eEE-EEecCCcEEEEeCCCCceE------EEecC-CCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 189 AVSFSDASD----KIY-TGGIDNDVKVWDLRKGEVS------MTLQG-HQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 189 ~~~~~~~~~----~l~-~~~~dg~i~iwd~~~~~~~------~~~~~-~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.++|++++. .|+ +-+..+.|+.||+...... ..+.+ +......|++..+|+..++....+.|.+||..
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 788887764 344 4467788999987533221 12222 12235679999999988887778899999865
Q ss_pred CCCCcCceeEEEeccccccccceEEEEECCCCCEE-EEeeCCCeEEEEeCCC
Q 019006 257 PYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKV-TAGSSDRMVYIWDTTS 307 (347)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sgs~dg~i~vwd~~~ 307 (347)
.. .....+... .....+++|.||++.| ++.+.+|.|+.+++..
T Consensus 256 ~g----~~~~~i~~p----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 256 GG----QPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CB----SCSEEEECS----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CC----EEEEEEECC----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 32 222222221 1356789999999755 5667788999988653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=2.4e-05 Score=64.86 Aligned_cols=237 Identities=8% Similarity=0.051 Sum_probs=136.5
Q ss_pred ecCccccEEEEEECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC----CeEEEEE
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD----KTLRAWD 128 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd 128 (347)
+......+..++|.++|++.++-...+.|+.|+..+... .............++++++|+++++...+ +.+...+
T Consensus 35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence 333444567899999999888887889999998765432 22333444567899999999887765432 3344444
Q ss_pred CCCCceeeeeecc--CcceeEeecCCCCCCEEEEEcC------CCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE
Q 019006 129 VETGKQIKKMAEH--NSFVNSCCPSRRGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY 200 (347)
Q Consensus 129 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 200 (347)
............. ....+.+...+.+ .+.++... .+.+..++...+........-...+.++|+++++.|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred CCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 4443332222111 1223445555554 34443221 1223333333222111112223457799999998775
Q ss_pred EE-ecCCcEEEEeCCCC-ceEE-------EecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc
Q 019006 201 TG-GIDNDVKVWDLRKG-EVSM-------TLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH 271 (347)
Q Consensus 201 ~~-~~dg~i~iwd~~~~-~~~~-------~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 271 (347)
.+ +..+.|+.||+... .... .........-.|++.++|+..++....+.|.++|-. ++.+..+..-
T Consensus 193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-----G~~l~~i~~P 267 (319)
T d2dg1a1 193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-----GYPIGQILIP 267 (319)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-----SCEEEEEECT
T ss_pred EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-----CcEEEEEeCC
Confidence 54 56789999987632 1111 111111234679999999988888888999999843 3334443321
Q ss_pred cc--ccccceEEEEECCCCCEEEEeeC
Q 019006 272 QH--NFEKNLLKCGWSPDGSKVTAGSS 296 (347)
Q Consensus 272 ~~--~~~~~~~~~~~s~~g~~l~sgs~ 296 (347)
.. .....+.+++|.+++..+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 268 GRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 11 11224668889998877766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.62 E-value=7.8e-05 Score=60.95 Aligned_cols=224 Identities=9% Similarity=0.064 Sum_probs=136.2
Q ss_pred EEEcCCCCEE-EEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecC--
Q 019006 106 LHWTTDGSQI-ISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP-- 182 (347)
Q Consensus 106 ~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-- 182 (347)
-.|++....| .+--..+.|..||..+++.. .+ .....+..+.+..++ .+++ ++.+ .+..+|..+++......
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCCEEEEECSS
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccceeeEEeeee
Confidence 4477644434 44446688988998877542 22 223344445544443 3444 4444 58889988776443221
Q ss_pred C---CCceEEEEEcCCCCeEEEEec----CCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEE-EEcCCCcEEEEe
Q 019006 183 D---KYQITAVSFSDASDKIYTGGI----DNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLL-TNGMDCKLCIWD 254 (347)
Q Consensus 183 ~---~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~-t~~~d~~i~~wd 254 (347)
. ...++.+.++++|+..++... .+.-.+|.+..++....... -..-+.++|+++++.++ +-+..+.|..++
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence 1 235788999999986665432 23456666666654443332 23467899999998665 445677898888
Q ss_pred CCCCCCc--CceeEEEeccccccccceEEEEECCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCeeeEEEc-CCCC
Q 019006 255 MRPYAPQ--NRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNESVFH-ATEP 331 (347)
Q Consensus 255 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 331 (347)
+...... ......... .........+++..+|.+.++.-..+.|..||. .++++.++.-....+++++|. ++.+
T Consensus 177 ~d~~~~~~~~~~~~~~~~--~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp BCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred ecccccccccceEEEecc--CcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence 7532111 111111111 111234667788999998888878889999995 577777776555678999996 5544
Q ss_pred -EEEEecC
Q 019006 332 -VIGSCSS 338 (347)
Q Consensus 332 -~l~s~s~ 338 (347)
+++|++.
T Consensus 254 ~LyvTta~ 261 (295)
T d2ghsa1 254 RLLVTSAR 261 (295)
T ss_dssp EEEEEEBC
T ss_pred EEEEEECC
Confidence 5565543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5.6e-05 Score=66.09 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=84.7
Q ss_pred EECCCCCeEEEeeCCCcEEEEeccCCCeeeEEEeCc---ccceeEEEEcCCCCEEEEe---------cCCCeEEEEECCC
Q 019006 64 KFNPAGTVIASGSHDRDIFLWHVHGDCKNFMVLKGH---KNAILDLHWTTDGSQIISA---------SPDKTLRAWDVET 131 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~---------~~dg~i~iwd~~~ 131 (347)
.|.+++.++. -..+|.|.+|+....... ..+..+ ...+....||||+++|+.. +..+.+.++|+.+
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEE-EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 4667766553 356778999998644332 222222 2356778899999988765 3457889999988
Q ss_pred Cceeee--eeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeecCCC--C-----------------ceEEE
Q 019006 132 GKQIKK--MAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDK--Y-----------------QITAV 190 (347)
Q Consensus 132 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~-----------------~v~~~ 190 (347)
+....- .......+....++|++..++... ++.+.+.+...+..++..... . .-..+
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 764322 112233344467788887765543 466888877665554433211 1 12467
Q ss_pred EEcCCCCeEEEEe
Q 019006 191 SFSDASDKIYTGG 203 (347)
Q Consensus 191 ~~~~~~~~l~~~~ 203 (347)
.|+|+|+.|+...
T Consensus 179 ~WSPDgk~iaf~~ 191 (465)
T d1xfda1 179 WWSPDGTRLAYAA 191 (465)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCeEEEEE
Confidence 7999999988754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=0.00011 Score=64.18 Aligned_cols=273 Identities=12% Similarity=0.100 Sum_probs=141.0
Q ss_pred cEEEEEECCCCCeEEEee---------CCCcEEEEeccCCCe-eeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEE
Q 019006 59 AVYTMKFNPAGTVIASGS---------HDRDIFLWHVHGDCK-NFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWD 128 (347)
Q Consensus 59 ~V~~v~~~~~~~~l~s~~---------~d~~v~~w~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 128 (347)
.+....||||++.++... ..+.+.++|+..... .+.........+....|||||+.||-.. ++.+.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 566778999999877653 356788888854321 1111112233455678999999988765 56788887
Q ss_pred CCCCceeeeeeccC-cc-----------------eeEeecCCCCCCEEEEEcCCCce-----------------------
Q 019006 129 VETGKQIKKMAEHN-SF-----------------VNSCCPSRRGPPLVVSGSDDGTA----------------------- 167 (347)
Q Consensus 129 ~~~~~~~~~~~~~~-~~-----------------v~~~~~~~~~~~~~~s~~~d~~i----------------------- 167 (347)
..++...+...... .. -....++|++..+++.--.+..+
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 76655433222111 11 12344677766544433333333
Q ss_pred ----------EEEeCCCCCcee-ecCC------CCceEEEEEcCCCCeEEEEecC----CcEEEEeCCCCceEEEecCCC
Q 019006 168 ----------KLWDMRQRGAIQ-TFPD------KYQITAVSFSDASDKIYTGGID----NDVKVWDLRKGEVSMTLQGHQ 226 (347)
Q Consensus 168 ----------~iwd~~~~~~~~-~~~~------~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 226 (347)
.++|+..+.... ..+. ..-+..+.|.++++.++..... ..|.++|..++++...+....
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~ 300 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence 333443222111 1111 1125678899888765554322 258889999887655443221
Q ss_pred -Cce----eEEEECCCCCEEE---EEcCC--CcEEEEeCCCCC--CcCceeEEEeccccccccceEE-EEECCCCCEEE-
Q 019006 227 -DMI----TGMSLSPDGSYLL---TNGMD--CKLCIWDMRPYA--PQNRCVKILEGHQHNFEKNLLK-CGWSPDGSKVT- 292 (347)
Q Consensus 227 -~~i----~~v~~~~~~~~l~---t~~~d--~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~l~- 292 (347)
..| ....|+++|+.++ ..-.+ +.+...++.... ........+.. ..+ .|.. +.|+++++.|.
T Consensus 301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~--G~w--~V~~i~~~d~~~~~vyF 376 (465)
T d1xfda1 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDW--DVTKILAYDEKGNKIYF 376 (465)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSS--CEEEEEEEETTTTEEEE
T ss_pred CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEecc--CCc--eEEEEEEEcCCCCEEEE
Confidence 111 3457899988543 22222 234444332110 11111111111 111 2333 46888887765
Q ss_pred EeeCC----CeEEEEeCCCceeeEEec---CCccCeeeEEEcCCCCEEEEe
Q 019006 293 AGSSD----RMVYIWDTTSRRILYKLP---GHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 293 sgs~d----g~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~ 336 (347)
++..+ ..|+-.++..+.....+. ........+.|+|++++++-.
T Consensus 377 ~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~ 427 (465)
T d1xfda1 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (465)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEE
Confidence 44433 235544554433332222 234456799999999988733
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.04 E-value=0.00045 Score=55.22 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=45.8
Q ss_pred ECCC--CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEec----CC--CeEEEEECCCCcee
Q 019006 65 FNPA--GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISAS----PD--KTLRAWDVETGKQI 135 (347)
Q Consensus 65 ~~~~--~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~d--g~i~iwd~~~~~~~ 135 (347)
.+|+ |+.+|-.+. +.|++.++.+. ....+..+...+....|||||++|+-.. .+ ..|.+++..+++..
T Consensus 6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g--~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC-DDLWEHDLKSG--STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp EEEEEETTEEEEEET-TEEEEEETTTC--CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred cCCCCCCCEEEEEeC-CcEEEEECCCC--CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 4577 887765543 56777788643 3345666777888999999999988543 22 24667777766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.02 E-value=0.0021 Score=52.06 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=128.6
Q ss_pred EEEECCC-CCeEEEeeCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeec
Q 019006 62 TMKFNPA-GTVIASGSHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAE 140 (347)
Q Consensus 62 ~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 140 (347)
+..|++. +.+..+=-..+.|..|+..+....... ....+.++++.+++.+++++ .+ -+.++|..+++...-...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence 4567764 455555556778988987654322222 23467888998888776654 44 488899888765322211
Q ss_pred c----CcceeEeecCCCCCCEEEEEcC----CCceEEEeCCCCCceeecCCCCceEEEEEcCCCCeEE-EEecCCcEEEE
Q 019006 141 H----NSFVNSCCPSRRGPPLVVSGSD----DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIY-TGGIDNDVKVW 211 (347)
Q Consensus 141 ~----~~~v~~~~~~~~~~~~~~s~~~----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw 211 (347)
. ....++....+.+. +.++... .+.-.+|.+..++.......-...+.++++++++.++ +-+..+.|+.|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEe
Confidence 1 12344555555543 3333211 1233455554444333333333467899999998765 45567889998
Q ss_pred eCCCC------ce--EEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 212 DLRKG------EV--SMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 212 d~~~~------~~--~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
++... +. ...+.+.......+++..+|++.++.-..+.|..||-. ++.+..+.-- ...+.+++
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-----G~~~~~i~lP----~~~~T~~~ 246 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----GNHIARYEVP----GKQTTCPA 246 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----CCEEEEEECS----CSBEEEEE
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-----CcEeeEecCC----CCceEEEE
Confidence 86421 11 12223334557889999999987777677889999853 3344444321 13578888
Q ss_pred EC-CCCCEEEEe
Q 019006 284 WS-PDGSKVTAG 294 (347)
Q Consensus 284 ~s-~~g~~l~sg 294 (347)
|- ||.+.|+..
T Consensus 247 FGG~d~~~LyvT 258 (295)
T d2ghsa1 247 FIGPDASRLLVT 258 (295)
T ss_dssp EESTTSCEEEEE
T ss_pred EeCCCCCEEEEE
Confidence 94 777666543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.96 E-value=0.00036 Score=55.80 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=113.2
Q ss_pred EcCC--CCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCC-----ceEEEeCCCCCceee
Q 019006 108 WTTD--GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDG-----TAKLWDMRQRGAIQT 180 (347)
Q Consensus 108 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~~~~~ 180 (347)
.+|+ |++++-.+ +|.|.+.|+.+++. ..+..+........++|++..++++...++ .|.+++...+...+.
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence 5677 88887654 45688889987765 455556666677788888876665554333 366667666554433
Q ss_pred cCCC-------CceEEEEEcCCCCeEEEEecC------CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCC
Q 019006 181 FPDK-------YQITAVSFSDASDKIYTGGID------NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMD 247 (347)
Q Consensus 181 ~~~~-------~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d 247 (347)
.... .......|+|+++.++..... ..+...+...+..... +........+.+.+..++....+
T Consensus 84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
T d1k32a2 84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFE 160 (281)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSC
T ss_pred eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccc
Confidence 2211 234677899999988765332 1244455544433221 12222333333333333332221
Q ss_pred Cc-----------EEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeC--CCeEEEEeCCCceeeEEe
Q 019006 248 CK-----------LCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSS--DRMVYIWDTTSRRILYKL 314 (347)
Q Consensus 248 ~~-----------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~--dg~i~vwd~~~~~~~~~~ 314 (347)
.. ....... .......... ........++++. .+..... ...|+++|+..++.. ++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~l 229 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEVN----SGAFKKIVDM-----STHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KH 229 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEEE----TTEEEEEECC-----SSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-EC
T ss_pred cceeeeeccCCcceeeeecc----ccceeeccCC-----ccccceeeeeccc-cceecccccccceEEEeCCCCceE-Ee
Confidence 10 0011000 0000000000 1122233344443 2222222 346888898877654 44
Q ss_pred cCCccCeeeEEEcCCCCEEEEecCCCcEEeecC
Q 019006 315 PGHTGSVNESVFHATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+. ......|+|+++.|+. ..++.|++.|+
T Consensus 230 t~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~ 260 (281)
T d1k32a2 230 TSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNP 260 (281)
T ss_dssp CCCC-SSCEEEEEESSSCEEE-EETTEEEEECT
T ss_pred ecCC-CcccccCcCCCCEEEE-EeCCEEEEEEC
Confidence 3332 2233469999998875 34677888764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.72 E-value=0.0092 Score=49.82 Aligned_cols=271 Identities=14% Similarity=0.083 Sum_probs=131.6
Q ss_pred EECCCCCeEEEeeCCC-----------cEEEEeccCC-CeeeEEE-eCcccceeEEEEcCCCCEEEEecCC-CeEEEEEC
Q 019006 64 KFNPAGTVIASGSHDR-----------DIFLWHVHGD-CKNFMVL-KGHKNAILDLHWTTDGSQIISASPD-KTLRAWDV 129 (347)
Q Consensus 64 ~~~~~~~~l~s~~~d~-----------~v~~w~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~ 129 (347)
....+|++++.|+.+. .+.+||...+ ....... ..|.......++.+++..++.|+.+ ..+.+||.
T Consensus 26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~ 105 (387)
T d1k3ia3 26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS 105 (387)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence 3346788888777431 2678998643 2222222 2333334566788999999988765 57999998
Q ss_pred CCCceeeeeec-cCcceeEeecCCCCCCEEEEEcCC------CceEEEeCCCCCceeecC---------CCC------ce
Q 019006 130 ETGKQIKKMAE-HNSFVNSCCPSRRGPPLVVSGSDD------GTAKLWDMRQRGAIQTFP---------DKY------QI 187 (347)
Q Consensus 130 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~---------~~~------~v 187 (347)
.+..-...-.. ....-...+...++ .+++.|+.+ ..+.+||..+..-...-. ... .-
T Consensus 106 ~~~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
T d1k3ia3 106 SSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 184 (387)
T ss_dssp GGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred ccCcccccccccccccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence 87654221110 11111223333333 466666532 357889987654211100 000 00
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEe--cC----CCCc--eeEEEE-CCCCCEEEEEcCC--------CcE
Q 019006 188 TAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTL--QG----HQDM--ITGMSL-SPDGSYLLTNGMD--------CKL 250 (347)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~--i~~v~~-~~~~~~l~t~~~d--------~~i 250 (347)
..+..-+++..+..+..++.+.++|..+......- .. +... -.++.+ ..+++.++.++.. ...
T Consensus 185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~ 264 (387)
T d1k3ia3 185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA 264 (387)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred eEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccccee
Confidence 11222334556666666677777777655432211 00 0000 112222 2345666666532 123
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEeeCC-----------CeEEEEeCCCceeeEEecCC-c
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSD-----------RMVYIWDTTSRRILYKLPGH-T 318 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sgs~d-----------g~i~vwd~~~~~~~~~~~~h-~ 318 (347)
.+.++............... .............+||+.++.|+.+ ..+.+||..+.+-. .+... .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~--~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~~~~ 341 (387)
T d1k3ia3 265 HIITLGEPGTSPNTVFASNG--LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPNSI 341 (387)
T ss_dssp EEEECCSTTSCCEEEECTTC--CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCCSS
T ss_pred ecccccccccCCCceeeccc--cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE-ECCCCCC
Confidence 33433322111111111110 0111222344456899999998843 14788998776422 22110 0
Q ss_pred cCe--eeEEEcCCCCEEEEecC
Q 019006 319 GSV--NESVFHATEPVIGSCSS 338 (347)
Q Consensus 319 ~~v--~~~~~~~~~~~l~s~s~ 338 (347)
... ......+++++++.++.
T Consensus 342 ~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 342 VRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEEECCCCEEEEEeCC
Confidence 111 12335789999988884
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.68 E-value=0.002 Score=54.04 Aligned_cols=192 Identities=12% Similarity=0.144 Sum_probs=108.9
Q ss_pred CCCEEEEe-cCCCeEEEEECCCCceeeeeec-cCcceeEeecCC-CCCCEEEEEcCC------------------CceEE
Q 019006 111 DGSQIISA-SPDKTLRAWDVETGKQIKKMAE-HNSFVNSCCPSR-RGPPLVVSGSDD------------------GTAKL 169 (347)
Q Consensus 111 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~s~~~d------------------~~i~i 169 (347)
||++|+.. ..+..|.+-|+++.+..+.+.. .......+.... ....+++.++.+ +.+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 68887655 4778999999998876443322 122223333222 223355544442 22556
Q ss_pred EeCCCCCceeecCCCCceEEEEEcCCCCeEEEEecCC---------------cEEEEe----------------------
Q 019006 170 WDMRQRGAIQTFPDKYQITAVSFSDASDKIYTGGIDN---------------DVKVWD---------------------- 212 (347)
Q Consensus 170 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd---------------------- 212 (347)
+|..+.+......-......+.++++++++++.+.+. .+.+++
T Consensus 178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV 257 (459)
T d1fwxa2 178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 257 (459)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence 7877766555444444566788999999988876431 133333
Q ss_pred -CCCC---ceEEEecCCCCceeEEEECCCCCEEEEEc-CCCcEEEEeCCCCCCc-------CceeEEEeccccccccceE
Q 019006 213 -LRKG---EVSMTLQGHQDMITGMSLSPDGSYLLTNG-MDCKLCIWDMRPYAPQ-------NRCVKILEGHQHNFEKNLL 280 (347)
Q Consensus 213 -~~~~---~~~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 280 (347)
.+.. .....+... .....+.++|||+++++++ .+.++.++|++..... ..++. +. ...--...
T Consensus 258 D~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~---~e-~elglgPL 332 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV---AE-PELGLGPL 332 (459)
T ss_dssp ECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE---EC-CBCCSCEE
T ss_pred cccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE---ee-cccCcCcc
Confidence 2210 011111111 2246789999999988776 4789999998632100 01110 00 00111245
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCC
Q 019006 281 KCGWSPDGSKVTAGSSDRMVYIWDTTS 307 (347)
Q Consensus 281 ~~~~s~~g~~l~sgs~dg~i~vwd~~~ 307 (347)
-.+|..+|.--.+---|.+|.-|++..
T Consensus 333 ht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 333 HTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccCCCceEEEEeeccceEEEEecch
Confidence 667888886555666899999999743
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.64 E-value=0.009 Score=47.45 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=156.0
Q ss_pred CcEEEEeccCCCeeeE-EEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCE
Q 019006 79 RDIFLWHVHGDCKNFM-VLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPL 157 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (347)
..|.+-|+.......+ ...+ -+.-.+|..+.|+.-+ ..++.++|+++.++++.+......+ -+.|..+. .
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~Vv-fWkWis~~--~ 115 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT-FWKWISLN--T 115 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCC-EEEESSSS--E
T ss_pred ceEEEEECCCCCcceecccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcE-EEEecCCC--E
Confidence 4577778754332221 1111 2334678777776555 5689999999998888776655443 45554432 3
Q ss_pred EEEEcCCCceEEEeCCCC-CceeecC-----CCCceEEEEEcCCCCeEEEEe---c----CCcEEEEeCCCCceEEEecC
Q 019006 158 VVSGSDDGTAKLWDMRQR-GAIQTFP-----DKYQITAVSFSDASDKIYTGG---I----DNDVKVWDLRKGEVSMTLQG 224 (347)
Q Consensus 158 ~~s~~~d~~i~iwd~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~---~----dg~i~iwd~~~~~~~~~~~~ 224 (347)
|+-.+ +..+.-|++... .+.+.+. ...+|.....+++.++++..+ . .|.+.+|..+.. ....+++
T Consensus 116 L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieG 193 (327)
T d1utca2 116 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG 193 (327)
T ss_dssp EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC
T ss_pred EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccc
Confidence 43333 457999998543 3443332 235788888899999876432 2 356788987643 4566777
Q ss_pred CCCceeEEEECCC--CCEEEE----EcCCCcEEEEeCCCCCCcCc-e-eEE--EeccccccccceEEEEECCCCCEEEEe
Q 019006 225 HQDMITGMSLSPD--GSYLLT----NGMDCKLCIWDMRPYAPQNR-C-VKI--LEGHQHNFEKNLLKCGWSPDGSKVTAG 294 (347)
Q Consensus 225 ~~~~i~~v~~~~~--~~~l~t----~~~d~~i~~wd~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg 294 (347)
|...-..+.+.-+ ...|++ +...+.+.+.++........ . .+. +.-......+-...+..|+....+..-
T Consensus 194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi 273 (327)
T d1utca2 194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 273 (327)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence 7544333333211 112222 12336888998864221111 1 111 111111123456678889999999999
Q ss_pred eCCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEE
Q 019006 295 SSDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIY 343 (347)
Q Consensus 295 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 343 (347)
+.-|.|++||++++.+++.-+=....|...+-+....-++....+|.|.
T Consensus 274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 9999999999999999987666667777666677766777777888775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.57 E-value=0.016 Score=48.58 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCceEEEeCCCCCcee--ecCCCCceEEEEEc--CCCCeEEEEecCC------------------cEEEEe
Q 019006 155 PPLVVSGSDDGTAKLWDMRQRGAIQ--TFPDKYQITAVSFS--DASDKIYTGGIDN------------------DVKVWD 212 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~~~dg------------------~i~iwd 212 (347)
..+++.-..+.+|-+.|++..+..+ .++....+-.+... |...+++.++.+. .+..+|
T Consensus 100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID 179 (459)
T d1fwxa2 100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 179 (459)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence 3466777788899999998877644 55665566666654 4455666665522 256788
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCC---------------cEEEEeCCCC---------CCcCceeEEE
Q 019006 213 LRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDC---------------KLCIWDMRPY---------APQNRCVKIL 268 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~---------------~i~~wd~~~~---------~~~~~~~~~~ 268 (347)
..+.+...++.-- .....+.++++|+++++.+.+. .+.+++.... ... .-+..+
T Consensus 180 ~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei-ngV~VV 257 (459)
T d1fwxa2 180 ADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-NGVKVV 257 (459)
T ss_dssp TTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE-TTEEEE
T ss_pred cCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe-CCceee
Confidence 8887766655432 3456789999999999876432 1333332100 000 000111
Q ss_pred ecccc---------ccccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCce-----------eeEEecCCccCeeeEEEc
Q 019006 269 EGHQH---------NFEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRR-----------ILYKLPGHTGSVNESVFH 327 (347)
Q Consensus 269 ~~~~~---------~~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~-----------~~~~~~~h~~~v~~~~~~ 327 (347)
..... ........+..+|||++++++ ..+..+.|+|++.-. .+..-....-.....+|.
T Consensus 258 D~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd 337 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD 337 (459)
T ss_dssp ECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEEC
T ss_pred cccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccC
Confidence 11000 001223456789999998765 468899999986321 111112223345778898
Q ss_pred CCCCEEEEecCCCcEEeecC
Q 019006 328 ATEPVIGSCSSDKQIYLGEI 347 (347)
Q Consensus 328 ~~~~~l~s~s~D~~i~i~~~ 347 (347)
..+.-..|-=-|.+|.-|++
T Consensus 338 ~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 338 GRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp TTSEEEEEETTTTEEEEEEH
T ss_pred CCceEEEEeeccceEEEEec
Confidence 88865556668999988864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.48 E-value=0.03 Score=49.54 Aligned_cols=146 Identities=15% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCccee-EeecC--CCCCCEEEEEc------CCCceEEEeCCCCCceeecC
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-SCCPS--RRGPPLVVSGS------DDGTAKLWDMRQRGAIQTFP 182 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~--~~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~ 182 (347)
+..|+.++.||.+.-.|.++++.+........... ..... -.. ..++.+. .+|.|+-+|+++++.+..+.
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 35678888999999999999988766532211100 00000 011 2334444 36789999999988765431
Q ss_pred CC--------------------------------------Cc-eEEEEEcCCCCeEEEEec----------------CCc
Q 019006 183 DK--------------------------------------YQ-ITAVSFSDASDKIYTGGI----------------DND 207 (347)
Q Consensus 183 ~~--------------------------------------~~-v~~~~~~~~~~~l~~~~~----------------dg~ 207 (347)
.. .. -...++++....++.+.. ...
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence 10 00 123456666666665443 235
Q ss_pred EEEEeCCCCceEEEecCCCCceeE---------EEECCCCC---EEEEEcCCCcEEEEeCCCC
Q 019006 208 VKVWDLRKGEVSMTLQGHQDMITG---------MSLSPDGS---YLLTNGMDCKLCIWDMRPY 258 (347)
Q Consensus 208 i~iwd~~~~~~~~~~~~~~~~i~~---------v~~~~~~~---~l~t~~~d~~i~~wd~~~~ 258 (347)
+.-.|.++++....++.....+.. ..+..+++ .++..+.+|.+.+.|..+.
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG 336 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC
Confidence 777899999988777643322221 11222332 4567788888988887654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.28 E-value=0.026 Score=44.45 Aligned_cols=222 Identities=9% Similarity=0.034 Sum_probs=132.6
Q ss_pred eCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCC
Q 019006 97 KGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQR 175 (347)
Q Consensus 97 ~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 175 (347)
..+...+..|+|....+.|+-+ ..++.|+..+++.......+......+..++....+..+.++-...+.|.+.++...
T Consensus 32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~ 111 (263)
T d1npea_ 32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (263)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence 3344567889998877766654 466788888887654433332222345556665555667777777889999998765
Q ss_pred CceeecCC-CCceEEEEEcCCCCeEEEEecC---CcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEE-cCCCcE
Q 019006 176 GAIQTFPD-KYQITAVSFSDASDKIYTGGID---NDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTN-GMDCKL 250 (347)
Q Consensus 176 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~-~~d~~i 250 (347)
........ ......++++|...+++..... ..|.-.++............-....++++.+.++.|.-+ ...+.|
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I 191 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence 54333332 3568899999988877754322 235445665433222222223456789998877777554 566788
Q ss_pred EEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEec-CCccCeeeEEEcC
Q 019006 251 CIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKLP-GHTGSVNESVFHA 328 (347)
Q Consensus 251 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~ 328 (347)
...|+... .....+.+.. ....+++. +.+|... ...+.|...|..+++.+..+. ........++..+
T Consensus 192 ~~~~~~g~----~~~~v~~~~~-----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 192 ECLNPAQP----GRRKVLEGLQ-----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEETTEE----EEEEEEECCC-----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEECCCC----CeEEEECCCC-----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 88887521 1112223221 23455553 4555544 466789999998887765543 3334455666555
Q ss_pred C
Q 019006 329 T 329 (347)
Q Consensus 329 ~ 329 (347)
+
T Consensus 261 ~ 261 (263)
T d1npea_ 261 S 261 (263)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.21 E-value=0.065 Score=47.59 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=86.6
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccCccee-EeecCC-CCCCEEEEEcC------CCceEEEeCCCCCceeecCCC
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-SCCPSR-RGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPDK 184 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~ 184 (347)
.+|+.+..|+.+.-.|.++++.+..+........ .....+ --...++.|.. .|.|+-+|+++++.+-.+...
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~ 201 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence 4688899999999999999998877643211110 000000 00123444442 488999999998876543110
Q ss_pred ---------------------------------------CceEEEEEcCCCCeEEEEecC----------------CcEE
Q 019006 185 ---------------------------------------YQITAVSFSDASDKIYTGGID----------------NDVK 209 (347)
Q Consensus 185 ---------------------------------------~~v~~~~~~~~~~~l~~~~~d----------------g~i~ 209 (347)
..-...++++..+.++.+..+ ..|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv 281 (596)
T d1w6sa_ 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (596)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence 012234566777776665432 3377
Q ss_pred EEeCCCCceEEEecCCCCcee---------EEE-ECCCC---CEEEEEcCCCcEEEEeCCCCC
Q 019006 210 VWDLRKGEVSMTLQGHQDMIT---------GMS-LSPDG---SYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~---------~v~-~~~~~---~~l~t~~~d~~i~~wd~~~~~ 259 (347)
-.|+++++....++.....+. -+. ...+| ..++....+|.+.++|..+.+
T Consensus 282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 789999998776654221111 111 12234 357778888999999976543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.058 Score=42.44 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=135.0
Q ss_pred cEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCce---eee-eeccCcceeEeecCCCC
Q 019006 80 DIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISA-SPDKTLRAWDVETGKQ---IKK-MAEHNSFVNSCCPSRRG 154 (347)
Q Consensus 80 ~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~---~~~-~~~~~~~v~~~~~~~~~ 154 (347)
.|+..++.+.. ...+......+.+++|++..++|+-. ..++.|+..++..... ... +......+..++....+
T Consensus 11 ~I~~~~l~~~~--~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 11 EVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SEEEEETTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred eEEEEECCCCc--ceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 46666765432 12222344567789998877776654 3556676666543211 111 11222233445555555
Q ss_pred CCEEEEEcCCCceEEEeCCCCCceeecC-CCCceEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCceEEEecCCCCceeE
Q 019006 155 PPLVVSGSDDGTAKLWDMRQRGAIQTFP-DKYQITAVSFSDASDKIYTGG--IDNDVKVWDLRKGEVSMTLQGHQDMITG 231 (347)
Q Consensus 155 ~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 231 (347)
..+.++-...++|.+.++.......... .......++++|...+++... ..+.|.-.++............-....+
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g 168 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 168 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE
Confidence 6677777778899999987655433332 335678899998877776543 3456777777644333333333345788
Q ss_pred EEECCCCCEEEEE-cCCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCce
Q 019006 232 MSLSPDGSYLLTN-GMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRR 309 (347)
Q Consensus 232 v~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~ 309 (347)
+++.+.++.|.-+ ...+.|...|+.... ......... . ......+++. +.+|... ..++.|+..+..++.
T Consensus 169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~----~~~~~~~~~-~-~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEK-R-LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEECTT-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeeccccEEEEecCCcCEEEEEECCCCC----EEEEEeCCC-c-ccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 9999877766655 556788888875311 111121111 1 1123455544 3455444 467888888888877
Q ss_pred eeEEecCCccCeeeE-EEcC
Q 019006 310 ILYKLPGHTGSVNES-VFHA 328 (347)
Q Consensus 310 ~~~~~~~h~~~v~~~-~~~~ 328 (347)
....+......+.++ .+||
T Consensus 241 ~~~~~~~~~~~p~~i~v~~~ 260 (266)
T d1ijqa1 241 DVNLLAENLLSPEDMVLFHN 260 (266)
T ss_dssp CCEEEECSCSCCCCEEEESG
T ss_pred ceEEEEcCCCCceEEEEECC
Confidence 666665544444333 3454
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.81 E-value=0.15 Score=44.98 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=32.5
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCcc-CeeeEEEcCCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTG-SVNESVFHATEP 331 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 331 (347)
.+.+++.|+.||.++-+|.++|+.+.+++-... .-.-+.|..+++
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk 519 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence 567888899999999999999999987653221 112245666775
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.71 E-value=0.18 Score=44.64 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-eeEEEcCCCC
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-NESVFHATEP 331 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~ 331 (347)
-.|.+++.|+.||.++-+|..+|+++.+++-..+.. .-+.|..+++
T Consensus 482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk 528 (596)
T d1w6sa_ 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (596)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence 357788889999999999999999998775332211 2244555665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.13 Score=40.20 Aligned_cols=201 Identities=9% Similarity=0.010 Sum_probs=119.3
Q ss_pred ecCccccEEEEEECCCCCeEEEe-eCCCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEE-EecCCCeEEEEECC
Q 019006 53 LTGHQSAVYTMKFNPAGTVIASG-SHDRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQII-SASPDKTLRAWDVE 130 (347)
Q Consensus 53 ~~~h~~~V~~v~~~~~~~~l~s~-~~d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~ 130 (347)
+..+...+.+|+|.+..+.|.-. ..++.|+..++.+.... ..+......+.++++..-++.|+ +-...+.|.+.+++
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 44555678899999877766655 45677888777654332 22333335678888876566665 44566789999987
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEE--eCCCCCceeec-CCCCceEEEEEcCCCCeEEEE-ecCC
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLW--DMRQRGAIQTF-PDKYQITAVSFSDASDKIYTG-GIDN 206 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg 206 (347)
.......+.........++..+....++.+-...+..+++ ++......... ..-.....+++++..+.|+.. ...+
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~ 189 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence 5543222222223455666666666666654433343444 44433322222 223456889999888877655 4667
Q ss_pred cEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCC
Q 019006 207 DVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMR 256 (347)
Q Consensus 207 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~ 256 (347)
.|...|+........+.+-.. ..+|++. .+....+-...+.|...|..
T Consensus 190 ~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 190 RAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp EEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence 899999875544433443332 4577775 33333444456777777765
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.45 E-value=0.25 Score=43.25 Aligned_cols=234 Identities=15% Similarity=0.155 Sum_probs=126.6
Q ss_pred CCEEEEecCCCeEEEEECCCCceeeeeeccCccee-EeecCC-CCCCEEEEEcC------CCceEEEeCCCCCceeecCC
Q 019006 112 GSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVN-SCCPSR-RGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPD 183 (347)
Q Consensus 112 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~ 183 (347)
+..++.+..|+.+.-.|..+++.+........... .....+ -....++.+.. .|.|.-+|.++++.+-.+..
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 45788888999999999999998876653221110 000000 00123333332 35688899998887655421
Q ss_pred ---C-----------------------------CceEEEEEcCCCCeEEEEec-------------------CCcEEEEe
Q 019006 184 ---K-----------------------------YQITAVSFSDASDKIYTGGI-------------------DNDVKVWD 212 (347)
Q Consensus 184 ---~-----------------------------~~v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd 212 (347)
. ..-....+++..+.++.+.. ...|.-.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 0 00122556666666654321 23466778
Q ss_pred CCCCceEEEecCCCCceeE---------EEECCCC---CEEEEEcCCCcEEEEeCCCCCCcCce-------eEEE-----
Q 019006 213 LRKGEVSMTLQGHQDMITG---------MSLSPDG---SYLLTNGMDCKLCIWDMRPYAPQNRC-------VKIL----- 268 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~---------v~~~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~-------~~~~----- 268 (347)
+++++....++.....+.. +.+..++ ..++.++.+|.+.++|..+.+..... ....
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 8999887766543322221 1122233 25667888899999997654321100 0000
Q ss_pred ---eccccccc-c------------ceEEEEECCCCCEEEEeeC------------------------------------
Q 019006 269 ---EGHQHNFE-K------------NLLKCGWSPDGSKVTAGSS------------------------------------ 296 (347)
Q Consensus 269 ---~~~~~~~~-~------------~~~~~~~s~~g~~l~sgs~------------------------------------ 296 (347)
........ . .-...+++|+..+++.-..
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 00000000 0 0113456677666654332
Q ss_pred CCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 297 DRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 297 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
.|.|.-||+.+++.+.+++-. .....-...-.+.++..++.||.++-+|
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~D 485 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred ccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEE
Confidence 257888999999998876532 2222222334456777788899888766
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.42 E-value=0.15 Score=40.28 Aligned_cols=171 Identities=11% Similarity=0.174 Sum_probs=102.4
Q ss_pred CcEEEEeccCCCeeeEEEeCccc----ceeEEEEcCCCCEEEEec-------CCCeEEEEECCCCceeeeeeccCcceeE
Q 019006 79 RDIFLWHVHGDCKNFMVLKGHKN----AILDLHWTTDGSQIISAS-------PDKTLRAWDVETGKQIKKMAEHNSFVNS 147 (347)
Q Consensus 79 ~~v~~w~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 147 (347)
..|+-|+++++..+...+..|.. .|..-.-+++.+.++..| -.|.+.+|..+... .+.+.+|......
T Consensus 122 taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~ 200 (327)
T d1utca2 122 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ 200 (327)
T ss_dssp SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEE
T ss_pred CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEE
Confidence 46899999776666667766653 577777788888766543 23678899877543 3445555433222
Q ss_pred eecCCC--CCCEEEEE---cCCCceEEEeCCCCCc-eee---------cCC---CCceEEEEEcCCCCeEEEEecCCcEE
Q 019006 148 CCPSRR--GPPLVVSG---SDDGTAKLWDMRQRGA-IQT---------FPD---KYQITAVSFSDASDKIYTGGIDNDVK 209 (347)
Q Consensus 148 ~~~~~~--~~~~~~s~---~~d~~i~iwd~~~~~~-~~~---------~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~ 209 (347)
+..... ...+++.+ ...+++.+.++..... -.. ++. ..-..++..++..+.++.-+.-|.|+
T Consensus 201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~ 280 (327)
T d1utca2 201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 280 (327)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEE
Confidence 222111 11233332 3336788888754211 111 122 12345677788888999999999999
Q ss_pred EEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcE
Q 019006 210 VWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKL 250 (347)
Q Consensus 210 iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i 250 (347)
+||+.++.++..-+--.+.|..-+-..+..-+++...+|.+
T Consensus 281 lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 281 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence 99999999887665545555544444443444444555544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.01 E-value=0.44 Score=41.78 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=79.7
Q ss_pred CEEEEecCCCeEEEEECCCCceeeeeeccCcce--eEeecCC-CCCCEEEEEcC------CCceEEEeCCCCCceeecCC
Q 019006 113 SQIISASPDKTLRAWDVETGKQIKKMAEHNSFV--NSCCPSR-RGPPLVVSGSD------DGTAKLWDMRQRGAIQTFPD 183 (347)
Q Consensus 113 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~ 183 (347)
..++.+..|+.+.-.|..+|+.+.......... ......+ -....++.++. .|.|..+|.++++.+..+..
T Consensus 129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 467778889999888999998876554321110 0000000 00123444432 46799999999887654311
Q ss_pred ---C-----------------------------Cce-EEEEEcCCCCeEEEEec-------------------CCcEEEE
Q 019006 184 ---K-----------------------------YQI-TAVSFSDASDKIYTGGI-------------------DNDVKVW 211 (347)
Q Consensus 184 ---~-----------------------------~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iw 211 (347)
. ..+ ...++++....++.+.. ...|.-.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl 288 (573)
T d1kb0a2 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (573)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence 0 001 23456666666554321 1236667
Q ss_pred eCCCCceEEEecCCCCceeE---------EEECCCC---CEEEEEcCCCcEEEEeCCCCC
Q 019006 212 DLRKGEVSMTLQGHQDMITG---------MSLSPDG---SYLLTNGMDCKLCIWDMRPYA 259 (347)
Q Consensus 212 d~~~~~~~~~~~~~~~~i~~---------v~~~~~~---~~l~t~~~d~~i~~wd~~~~~ 259 (347)
|.++++....++.....+.. .....++ ..++.++.+|.+..+|..+.+
T Consensus 289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe 348 (573)
T d1kb0a2 289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (573)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence 77888776655432221211 1111222 356777888999999976543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.71 E-value=0.58 Score=40.82 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=34.4
Q ss_pred CCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-eeEEEcCCCC-EEE
Q 019006 286 PDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-NESVFHATEP-VIG 334 (347)
Q Consensus 286 ~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~-~l~ 334 (347)
-.|.+++.|+.||.++-+|..+|+++.+++-..+.. .-+.|..+++ +|+
T Consensus 467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 356788899999999999999999998776432211 2245555665 444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.52 E-value=0.92 Score=36.63 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=24.5
Q ss_pred CceeEEEECCCCCEEEEE-cCCCcEEEEeCCC
Q 019006 227 DMITGMSLSPDGSYLLTN-GMDCKLCIWDMRP 257 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~-~~d~~i~~wd~~~ 257 (347)
...+.|+++|++++|+.+ ...+.|+.|++..
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 457899999999877655 5567899999864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.35 E-value=1 Score=36.54 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=58.9
Q ss_pred EEEEeCCCCceEE---EecCCCCceeEEEECCCCCEEEEEcCC-CcEEEEeCCCCCCcCceeEEEeccccccccceEEEE
Q 019006 208 VKVWDLRKGEVSM---TLQGHQDMITGMSLSPDGSYLLTNGMD-CKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCG 283 (347)
Q Consensus 208 i~iwd~~~~~~~~---~~~~~~~~i~~v~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (347)
+.+||..+++-.. ....+.......++.++++.++.|+.+ ..+.+||.... .. ...... .....-..++
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~----~w-~~~~~~--~~~r~~~~~~ 126 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD----SW-IPGPDM--QVARGYQSSA 126 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT----EE-EECCCC--SSCCSSCEEE
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC----cc-cccccc--ccccccccee
Confidence 6789988764221 112233333456788999999988765 58999997632 11 111111 1122234556
Q ss_pred ECCCCCEEEEeeCC------CeEEEEeCCCce
Q 019006 284 WSPDGSKVTAGSSD------RMVYIWDTTSRR 309 (347)
Q Consensus 284 ~s~~g~~l~sgs~d------g~i~vwd~~~~~ 309 (347)
..+||+.++.|+.+ ..+.+||..+.+
T Consensus 127 ~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 127 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp ECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eecCCceeeeccccccccccceeeeecCCCCc
Confidence 67899999998753 368999988765
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.24 E-value=1.1 Score=36.32 Aligned_cols=198 Identities=13% Similarity=0.256 Sum_probs=105.8
Q ss_pred CCCCEEEEecCCCeEEEEECCCCceeeeeeccCcceeE--e----ecCCCCCCEEEEEcC-C--CceEEEeCCC-CCcee
Q 019006 110 TDGSQIISASPDKTLRAWDVETGKQIKKMAEHNSFVNS--C----CPSRRGPPLVVSGSD-D--GTAKLWDMRQ-RGAIQ 179 (347)
Q Consensus 110 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--~----~~~~~~~~~~~s~~~-d--~~i~iwd~~~-~~~~~ 179 (347)
|+..+++....++-+.+||++ |+.+..+... .++. + ........++++... + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~G--r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTG--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCSS--CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecccC--CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 345567766777679999985 7766655321 1111 1 111111123333322 2 3577777642 22232
Q ss_pred ecC--------CCCceEEEEE--cCCCC--eEEEEecCCcEEEEeCC---CCc----eEEEecCCCCceeEEEECCCCCE
Q 019006 180 TFP--------DKYQITAVSF--SDASD--KIYTGGIDNDVKVWDLR---KGE----VSMTLQGHQDMITGMSLSPDGSY 240 (347)
Q Consensus 180 ~~~--------~~~~v~~~~~--~~~~~--~l~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~i~~v~~~~~~~~ 240 (347)
.+. ....+..+|+ ++..+ ++++...+|.+..|.+. .+. .+.++.. ...+.++.+....+.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS 193 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence 222 1224666666 55544 45667788999888663 232 2333332 346889999999999
Q ss_pred EEEEcCCCcEEEEeCCCCCCcCce-eEEEeccccccccceEEEE--ECCCCC-EEE-EeeCCCeEEEEeCCCc-eeeEE
Q 019006 241 LLTNGMDCKLCIWDMRPYAPQNRC-VKILEGHQHNFEKNLLKCG--WSPDGS-KVT-AGSSDRMVYIWDTTSR-RILYK 313 (347)
Q Consensus 241 l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~s~~g~-~l~-sgs~dg~i~vwd~~~~-~~~~~ 313 (347)
|+.+-.+..+..++..+....... +....+ ..+...+-.++ -..++. +|+ |.-.+++..+||.... +.+..
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g--~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSS--SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccC--ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 999988877766666543222222 111111 11233333333 344433 554 4446788999998763 55543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=1.1 Score=34.76 Aligned_cols=212 Identities=8% Similarity=-0.046 Sum_probs=118.3
Q ss_pred eEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCC----ceeec-CCCCceEEEEEcCCCC
Q 019006 123 TLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG----AIQTF-PDKYQITAVSFSDASD 197 (347)
Q Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~~~ 197 (347)
.|+..++++.... .+......+..+.+......++.+=...+.|.-.++.... ..... .....+..+++++.++
T Consensus 11 ~I~~~~l~~~~~~-~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred eEEEEECCCCcce-eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence 3666676654322 2222223344455555555555555556666655554211 11111 2234567788987777
Q ss_pred eEEEEe-cCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEc--CCCcEEEEeCCCCCCcCceeEEEeccccc
Q 019006 198 KIYTGG-IDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNG--MDCKLCIWDMRPYAPQNRCVKILEGHQHN 274 (347)
Q Consensus 198 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 274 (347)
.++... ..+.|.+.++........+.........++++|...+|.-.. ..+.|...++.. .....+-...
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-----s~~~~l~~~~-- 162 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-----VDIYSLVTEN-- 162 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----CCEEEEECSS--
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC-----Cceecccccc--
Confidence 776654 557899999886665555555556678999998766666543 334566666542 1112221111
Q ss_pred cccceEEEEECCCCCEEEEe-eCCCeEEEEeCCCceeeEEe--cCCccCeeeEEEcCCCCEEEEecCCCcEEe
Q 019006 275 FEKNLLKCGWSPDGSKVTAG-SSDRMVYIWDTTSRRILYKL--PGHTGSVNESVFHATEPVIGSCSSDKQIYL 344 (347)
Q Consensus 275 ~~~~~~~~~~s~~g~~l~sg-s~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i 344 (347)
-.....+++.+.+..|... +..+.|...++........+ .........+++. ++.+..+-..++.|+-
T Consensus 163 -~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~ 233 (266)
T d1ijqa1 163 -IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS 233 (266)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred -cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEE
Confidence 1345678888888777665 55688999998665433222 2222345677776 3455555555666644
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.10 E-value=1.8 Score=35.04 Aligned_cols=184 Identities=9% Similarity=0.206 Sum_probs=107.1
Q ss_pred CEEEEEcCCCceEEEeCCCCCceeecCCCCceEEEEEc------CCCCeEEEEecC----CcEEEEeCCC-CceEEEecC
Q 019006 156 PLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS------DASDKIYTGGID----NDVKVWDLRK-GEVSMTLQG 224 (347)
Q Consensus 156 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~ 224 (347)
.+++.....+-+.+||+. ++.++.++. .+++.+..- .....+++++.. ..|.+|.+.. ......+..
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 466666666679999985 666666542 345544432 222235555532 2577776642 222222221
Q ss_pred C-------CCceeEEEE--CCC-CC-EEEEEcCCCcEEEEeCCCCCCc---CceeEEEeccccccccceEEEEECCCCCE
Q 019006 225 H-------QDMITGMSL--SPD-GS-YLLTNGMDCKLCIWDMRPYAPQ---NRCVKILEGHQHNFEKNLLKCGWSPDGSK 290 (347)
Q Consensus 225 ~-------~~~i~~v~~--~~~-~~-~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 290 (347)
. ...+..+|+ ++. +. ++++...+|.+..|.+...... ...++.+. ....+-.|.+......
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-----~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-----MNSQTEGMAADDEYGS 193 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-----CSSCEEEEEEETTTTE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-----CCCccceEEEeCCCCc
Confidence 1 123677777 664 43 5677788899998877532211 12222222 2345778889999999
Q ss_pred EEEeeCCCeEEEEeCCC-----ceeeEEecC--CccCeeeEEEcCC----CCEEEEecCCCcEEeec
Q 019006 291 VTAGSSDRMVYIWDTTS-----RRILYKLPG--HTGSVNESVFHAT----EPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 291 l~sgs~dg~i~vwd~~~-----~~~~~~~~~--h~~~v~~~~~~~~----~~~l~s~s~D~~i~i~~ 346 (347)
|..+-.+.-|+.+++.. +.++....+ ..+.+-.++.-.. +-+|+|.-.|.+..++|
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence 99999888787776642 233333322 3556777775433 34666766788887775
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=2.1 Score=35.04 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=77.7
Q ss_pred ceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEEEecCCCCceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCcee
Q 019006 186 QITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSMTLQGHQDMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCV 265 (347)
Q Consensus 186 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 265 (347)
.+..++|+.+ .++.. .++.+..++...-........-...+.++.+.|. .++....++.+-++++......
T Consensus 88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~---- 158 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---- 158 (381)
T ss_dssp TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----
T ss_pred CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccc----
Confidence 5788888754 44443 4456777877654333333223456788888774 4566667888999998754211
Q ss_pred EEEec-cccccccceEEEEECCCCCEEEEeeCCCeEEEE-eCCCceeeEEecCCccCeeeEEEcCCCCEEEEe
Q 019006 266 KILEG-HQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIW-DTTSRRILYKLPGHTGSVNESVFHATEPVIGSC 336 (347)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~s~~g~~l~sgs~dg~i~vw-d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 336 (347)
....+ ..........+++|++.|..++++..++ ..+- +......+..-......|.++.|-.+..+++.-
T Consensus 159 ~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 159 QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 11110 1112234567778888888887774432 2211 111111111111234467888888777776643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.69 E-value=2 Score=34.56 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCceEE---EecCCC-----CceeEEEE--CCCCC-EEEEEc---CCCcEEEEeCCCCCCcCceeEEEec
Q 019006 205 DNDVKVWDLRKGEVSM---TLQGHQ-----DMITGMSL--SPDGS-YLLTNG---MDCKLCIWDMRPYAPQNRCVKILEG 270 (347)
Q Consensus 205 dg~i~iwd~~~~~~~~---~~~~~~-----~~i~~v~~--~~~~~-~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~ 270 (347)
.|.|.++|+.+.+... .+.+.. -....+.+ .+++. +|++.. ...+|-+|++.........+.++..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4889999987653221 222110 11234443 34555 344442 3457888887643322222223322
Q ss_pred cccccccceEEEEECCCCCEEEEee-----------------CCCeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEE
Q 019006 271 HQHNFEKNLLKCGWSPDGSKVTAGS-----------------SDRMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVI 333 (347)
Q Consensus 271 ~~~~~~~~~~~~~~s~~g~~l~sgs-----------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 333 (347)
........++...+|.+.+|-. .-+.+..||....+.+ ...-...+.++++|+++.|
T Consensus 147 ---~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~---~~~l~~pNGI~~s~d~~~l 220 (340)
T d1v04a_ 147 ---KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV---AEGFDFANGINISPDGKYV 220 (340)
T ss_dssp ---TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE---EEEESSEEEEEECTTSSEE
T ss_pred ---ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE---cCCCCccceeEECCCCCEE
Confidence 2223467777888888888831 1234455554433222 2223468999999998754
Q ss_pred -EEecCCCcEEeec
Q 019006 334 -GSCSSDKQIYLGE 346 (347)
Q Consensus 334 -~s~s~D~~i~i~~ 346 (347)
++-+..+.|+.++
T Consensus 221 yVa~t~~~~i~~y~ 234 (340)
T d1v04a_ 221 YIAELLAHKIHVYE 234 (340)
T ss_dssp EEEEGGGTEEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 4555677777765
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.51 E-value=3 Score=36.19 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-eeEEEcCCCC
Q 019006 287 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-NESVFHATEP 331 (347)
Q Consensus 287 ~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~ 331 (347)
.|.+|++|+.||.++.||..+|+.+.+++-..+.. .-+.|..+++
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 67788899999999999999999998765332211 1244555665
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.87 E-value=3.6 Score=35.72 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=34.6
Q ss_pred CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCcEEeec
Q 019006 298 RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQIYLGE 346 (347)
Q Consensus 298 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~i~~ 346 (347)
|.|.-+|+.+++++.+.+.+. ++..-..+..+.++..++.||.++-+|
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~D 513 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEE
Confidence 678889999999998876443 233223445566777889999998776
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.51 E-value=4.9 Score=34.81 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCCCCEEEEeeCCCeEEEEeCCCceeeEEecCCccCe-eeEEEcCCCC
Q 019006 285 SPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSV-NESVFHATEP 331 (347)
Q Consensus 285 s~~g~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~ 331 (347)
+..|.+++.|+.||.++-||.++|+++.+++-..... .-+.|..+++
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 3467788899999999999999999998776432221 2356777775
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.16 E-value=4.3 Score=33.56 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=112.8
Q ss_pred CccccEEEEEECCCCCeEEEe-eC----CCcEEEEeccCCCeeeEEEeCcccceeEEEEcCCCCEEEEecCC--------
Q 019006 55 GHQSAVYTMKFNPAGTVIASG-SH----DRDIFLWHVHGDCKNFMVLKGHKNAILDLHWTTDGSQIISASPD-------- 121 (347)
Q Consensus 55 ~h~~~V~~v~~~~~~~~l~s~-~~----d~~v~~w~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------- 121 (347)
++.-.+....++|+++++|-+ +. -..++++|+.+.......+.. .....+.|++|++.|+-...|
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence 444445667889999988732 22 335889998654221112211 122568899999987654322
Q ss_pred --------CeEEEEECCCCcee--eeeec--cCcceeEeecCCCCCCEEEEEc--CCCceEEE--eCCCCCc--------
Q 019006 122 --------KTLRAWDVETGKQI--KKMAE--HNSFVNSCCPSRRGPPLVVSGS--DDGTAKLW--DMRQRGA-------- 177 (347)
Q Consensus 122 --------g~i~iwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~s~~--~d~~i~iw--d~~~~~~-------- 177 (347)
..|..|.+.+.... ..+.. ..........+.++..+++... .+....+| |+.....
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence 25777777664321 11221 2223333444555544444332 23334444 4432111
Q ss_pred eeecCC-CCceEEEEEcCCCCeEEEEe----cCCcEEEEeCCCCce---EEEecCCCCceeEEEECCCCCEEEEEc-CCC
Q 019006 178 IQTFPD-KYQITAVSFSDASDKIYTGG----IDNDVKVWDLRKGEV---SMTLQGHQDMITGMSLSPDGSYLLTNG-MDC 248 (347)
Q Consensus 178 ~~~~~~-~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~i~~v~~~~~~~~l~t~~-~d~ 248 (347)
...... .....-+. + .+..++.-+ .++.|...++..... ...+..+...+..-.+...+.+|+..- .++
T Consensus 280 ~~~~~~~~~~~~~~~-~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~ 357 (430)
T d1qfma1 280 VKLIDNFEGEYDYVT-N-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (430)
T ss_dssp EEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEeecccccceEEEe-c-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence 111111 11122222 2 233333322 235566666654321 122333443343333333455666543 443
Q ss_pred --cEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEE--eeC--CCeEEEEeCCCcee
Q 019006 249 --KLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTA--GSS--DRMVYIWDTTSRRI 310 (347)
Q Consensus 249 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s--gs~--dg~i~vwd~~~~~~ 310 (347)
.|+++++.... ........ ...+..+...++...+.. .|. =..++.+|+.+++.
T Consensus 358 ~~~l~v~~~~~~~----~~~~~~~~----~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 358 KNTLQLHDLATGA----LLKIFPLE----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEEEETTTCC----EEEEECCC----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EeEEEEEECCCCc----EEEecCCC----CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 67888876422 11111111 123334444455544332 221 15788888887753
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.96 E-value=4.2 Score=33.12 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=74.3
Q ss_pred EEEEEECCCCCeEEEeeCCCcEEEEecc---------CCCeeeEEEeCcccceeEEEEcCCCCEEEEecCCCeEEEEECC
Q 019006 60 VYTMKFNPAGTVIASGSHDRDIFLWHVH---------GDCKNFMVLKGHKNAILDLHWTTDGSQIISASPDKTLRAWDVE 130 (347)
Q Consensus 60 V~~v~~~~~~~~l~s~~~d~~v~~w~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 130 (347)
..-++.++...++|.|+.++ +++-... .....+ ..+..-..|..++|+.+ .|+.. .++.+..++..
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~-~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE 113 (381)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcc-eeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence 33556667777888888775 4455431 000111 01111235888999744 45444 45567777776
Q ss_pred CCceeeeeeccCcceeEeecCCCCCCEEEEEcCCCceEEEeCCCCCceeec------CCCCceEEEEEcCCCCeEEEE
Q 019006 131 TGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTF------PDKYQITAVSFSDASDKIYTG 202 (347)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~ 202 (347)
.-........-...+....+.+ ..++....++.+.++++...+..... .-...+.+++|++.+..++++
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 114 ELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp STTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred ccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence 5433333222233444555544 34566677888999998876533221 123456677777666666665
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.04 E-value=7.4 Score=32.39 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCeEEEEecCCcEEEEeCCCCceEE--Eec------CCCCceeEEEECCC
Q 019006 185 YQITAVSFSDASDKIYTGGIDNDVKVWDLRKGEVSM--TLQ------GHQDMITGMSLSPD 237 (347)
Q Consensus 185 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~------~~~~~i~~v~~~~~ 237 (347)
....+++|.|+++.+++--..|+|++++..+++... .+. .-+.-...|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 457899999999877765557999999877765332 211 11234678999985
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=5.3 Score=30.39 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=27.1
Q ss_pred CCCEEEEeeCC-----CeEEEEeCCCceeeEEecCCccCeeeEEEcCCCCEEEEecCCCc
Q 019006 287 DGSKVTAGSSD-----RMVYIWDTTSRRILYKLPGHTGSVNESVFHATEPVIGSCSSDKQ 341 (347)
Q Consensus 287 ~g~~l~sgs~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 341 (347)
++..++.|+.+ .....+|..+.+....-+.........+...++++++.+|.++.
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 254 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 254 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCC
Confidence 34555555543 35677777665433211111112222222336778888876654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.43 E-value=3.7 Score=34.37 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=59.0
Q ss_pred CceeEEEECCCCCEEEEEcCCCcEEEEeCCCCCCcCceeEEEecc--ccccccceEEEEECCC---CCEEEEe-e-----
Q 019006 227 DMITGMSLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGH--QHNFEKNLLKCGWSPD---GSKVTAG-S----- 295 (347)
Q Consensus 227 ~~i~~v~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~---g~~l~sg-s----- 295 (347)
...++|+|.|+++.+++--..|.|++++..... .+.+..+... ...-..-...++|+|+ ..+|... +
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~--~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc--EeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 346899999999988886557899998765321 1222222111 0111245678999985 3344332 1
Q ss_pred -CC----Ce--EEEEeCCCc-------e-eeEEec---CCccCeeeEEEcCCCCEEEEecC
Q 019006 296 -SD----RM--VYIWDTTSR-------R-ILYKLP---GHTGSVNESVFHATEPVIGSCSS 338 (347)
Q Consensus 296 -~d----g~--i~vwd~~~~-------~-~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~ 338 (347)
.+ +. +..+..... + ++..++ .|. --.++|.|++.+.++.|.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred CcccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence 01 11 223322211 1 111221 233 468899999998888775
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.27 E-value=11 Score=30.98 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=105.9
Q ss_pred ceeEEEEcCCCCEEEEe-cCC----CeEEEEECCCCceeeeeeccCcceeEeecCCCCCCEEEEEcC-------------
Q 019006 102 AILDLHWTTDGSQIISA-SPD----KTLRAWDVETGKQIKKMAEHNSFVNSCCPSRRGPPLVVSGSD------------- 163 (347)
Q Consensus 102 ~v~~~~~~~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~------------- 163 (347)
.+..+.++|++++++-+ +.+ -.++++|+.+++.+....... ....+.+.+++..++.+.-.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~-~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc-cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 44566789999988743 333 369999999998664322211 11234455555545444321
Q ss_pred --CCceEEEeCCCCCc--eeecC--C-CCceEEEEEcCCCCeEEEEe---cCCc--EEEEeCCCCce--------EEEec
Q 019006 164 --DGTAKLWDMRQRGA--IQTFP--D-KYQITAVSFSDASDKIYTGG---IDND--VKVWDLRKGEV--------SMTLQ 223 (347)
Q Consensus 164 --d~~i~iwd~~~~~~--~~~~~--~-~~~v~~~~~~~~~~~l~~~~---~dg~--i~iwd~~~~~~--------~~~~~ 223 (347)
...+..+.+.+... ...+. . ...+..+..++++++++... .+.. +.+.|+..... .....
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 12456666654322 12222 1 23456677888888876432 2333 34445432110 11111
Q ss_pred CCCCceeEEEECCCCCEEEEEc---CCCcEEEEeCCCCCCcCceeEEEeccccccccceEEEEECCCCCEEEEe-eCCC-
Q 019006 224 GHQDMITGMSLSPDGSYLLTNG---MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAG-SSDR- 298 (347)
Q Consensus 224 ~~~~~i~~v~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-s~dg- 298 (347)
....... ...+..+.+++... .++.|...++..... ......+..+. ..+..-.+...+.+|+.. -.++
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~-~~w~~vi~~~~----~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHE----KDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCG-GGCEEEECCCS----SCEEEEEEEETTTEEEEEEEETTE
T ss_pred ccccceE-EEecCCceeecccCcccccceeEEecCCCCcc-ccceEEecccC----cceeeeEEEEECCEEEEEEEcCCE
Confidence 1111122 22222233333332 235666666654321 11122222221 223333344445556544 4554
Q ss_pred -eEEEEeCCCceeeEEecCCccCeeeEEEcCCCC
Q 019006 299 -MVYIWDTTSRRILYKLPGHTGSVNESVFHATEP 331 (347)
Q Consensus 299 -~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 331 (347)
.|++++...+........-.+.|..+...++..
T Consensus 359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred eEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence 588899988776544433344555554444443
|