Citrus Sinensis ID: 019048
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.902 | 0.544 | 0.674 | 1e-118 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.948 | 0.785 | 0.613 | 1e-114 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.847 | 0.765 | 0.688 | 1e-113 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.884 | 0.704 | 0.639 | 1e-109 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.873 | 0.706 | 0.590 | 2e-99 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.876 | 0.624 | 0.596 | 1e-98 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.936 | 0.684 | 0.561 | 3e-98 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.936 | 0.685 | 0.561 | 4e-98 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.818 | 0.592 | 0.551 | 7e-83 | |
| 42570140 | 479 | P-loop containing nucleoside triphosphat | 0.818 | 0.592 | 0.525 | 2e-77 |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/316 (67%), Positives = 246/316 (77%), Gaps = 3/316 (0%)
Query: 35 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 91
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 211
LQEY IPR S+SF LYDTR LS D+ D+ NM+K WI +GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 272 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 331
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 332 HADRNLSCKSCARNKV 347
HAD+NL K KV
Sbjct: 384 HADKNLPHKRQIAKKV 399
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/334 (61%), Positives = 250/334 (74%), Gaps = 5/334 (1%)
Query: 9 RFFTPEGEEIISPV-DDFDIPLLSGDDEGSR----DSWDSLVDQRRRDAVFREVLQSYDQ 63
+ + P G+ + V +++ + ++ G R S + +QR++ F+E+LQSYDQ
Sbjct: 28 QLYHPSGKHDVERVNEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQ 87
Query: 64 LRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123
LR+R SL +AK+KILSYTPG W E VGGM LSDY+VPKTT+LLL+GP+GSGKSSLVNRI
Sbjct: 88 LRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRI 147
Query: 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI 183
SKVF++DKFA ERAQV+YN S G+GTYFLQEY IP S SF LYDTR D++ DNI M+
Sbjct: 148 SKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEML 207
Query: 184 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243
K W+ GV HGEL +R+ D SSLR RM+CK G + R VNFVIFVV+GLAVLKSM
Sbjct: 208 KYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSM 267
Query: 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPP 303
+ + QY ++A+ FNCPY SF+DDKPVVVVTHGDLLSL+DR RIR +LGELLGIPP
Sbjct: 268 GSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPP 327
Query: 304 AKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 337
AKQIFDIPES DP EL I+DMLRY LEHAD NL
Sbjct: 328 AKQIFDIPESCDPVTELTIIDMLRYSLEHADNNL 361
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/295 (68%), Positives = 235/295 (79%), Gaps = 1/295 (0%)
Query: 47 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 106
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 107 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRGS SF L
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 167 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226
YDTR LSD +SDN+ M+K WI +GVRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 227 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 285
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 286 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 340
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCK 322
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 239/308 (77%), Gaps = 1/308 (0%)
Query: 33 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 92
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212
EY I R S SF LYDTR LS+D SDNI M+K W+ +GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 273 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 332
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 333 ADRNLSCK 340
AD+NL K
Sbjct: 366 ADKNLPPK 373
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 226/305 (74%), Gaps = 2/305 (0%)
Query: 45 VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 104
V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+ +SDYDVPKTT
Sbjct: 70 VNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVPKTT 129
Query: 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 164
LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQEY IPR SNS
Sbjct: 130 CLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQEYMIPRYSNSI 189
Query: 165 SLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222
LYDTRSLSD++ +NI M+K W+ +GV HGELV+R++D+ LR ++ KAHK G S
Sbjct: 190 CLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGYLSS 249
Query: 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 282
RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDKPV+V THGDL
Sbjct: 250 KTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTHGDL 309
Query: 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSC 342
LS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L HADR+ +S
Sbjct: 310 LSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAHADRHFPQRSK 369
Query: 343 ARNKV 347
+KV
Sbjct: 370 VMDKV 374
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/307 (59%), Positives = 231/307 (75%), Gaps = 3/307 (0%)
Query: 44 LVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 103
+V +R+R ++++E+LQSYD+L+ SL AK KIL Y PG WIE G+ L DYDVP+T
Sbjct: 65 VVGERKRLSIYQEILQSYDELKIDSISLKQAKEKILRYRPGTWIEKARGLKLRDYDVPET 124
Query: 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 163
TSL+L+GP GSGKSSL+NRISKVF++DKFA RAQV+YNS GDGTYFL+E+ IPR SNS
Sbjct: 125 TSLILVGPSGSGKSSLINRISKVFDDDKFAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS 184
Query: 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223
LYDTRSLS+ + +N M+K W+ EGV HGELVIR D+ +L ++CK +K G S
Sbjct: 185 ICLYDTRSLSNKSHENNEMLKNWMTEGVHHGELVIRSKDNQTLTESLKCKGNKKGFFSSK 244
Query: 224 IRKVNFVIFVVDGLAVLKSME-GDSDVEKQY-NQIVAT-TFNCPYLSFRDDKPVVVVTHG 280
RKVNFVI+V++GL+VL ME D + +Y +IV+T FN P+LSF+DDKPV+V+THG
Sbjct: 245 SRKVNFVIYVLNGLSVLNMMENADGAFKARYIEEIVSTFNFNNPFLSFKDDKPVLVLTHG 304
Query: 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 340
DLLSL+DRAR+R YLGE+LGIPP KQIFDIPE D E I+ MLRY LEHAD N+ K
Sbjct: 305 DLLSLSDRARVRVYLGEVLGIPPTKQIFDIPECDDLVTESAIIGMLRYTLEHADNNIPQK 364
Query: 341 SCARNKV 347
+ NKV
Sbjct: 365 TNVMNKV 371
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/326 (56%), Positives = 232/326 (71%), Gaps = 1/326 (0%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202
S G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 261
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 262 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 322 IVDMLRYCLEHADRNLSCKSCARNKV 347
IV MLRY LEHAD N KS NK+
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 183/326 (56%), Positives = 232/326 (71%), Gaps = 1/326 (0%)
Query: 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYT 82
++ D +S + + + DS++ +R+R +++E+LQSYD L+ +L +AK KILSY
Sbjct: 50 NELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDSKNLKEAKEKILSYR 109
Query: 83 PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142
PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+ DKFA RAQV+YN
Sbjct: 110 PGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFDEDKFAPARAQVSYN 169
Query: 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202
S G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+ +GVRHGELV R D
Sbjct: 170 SIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMTKGVRHGELVARGMD 229
Query: 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDSDVEKQYNQIVATTF 261
L ++ K K G S RKVN+VI V++GL+VL +E +E+ Y Q + +TF
Sbjct: 230 DKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGGALEEWYIQQIVSTF 289
Query: 262 NCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321
NCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQIFDIP+ D E
Sbjct: 290 NCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQIFDIPDCDDLVTESA 349
Query: 322 IVDMLRYCLEHADRNLSCKSCARNKV 347
IV MLRY LEHAD N KS NK+
Sbjct: 350 IVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/299 (55%), Positives = 214/299 (71%), Gaps = 15/299 (5%)
Query: 42 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 161 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218
S SF LYDTR LS +SDN MI+ W+ +GV HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 279 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 337
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNF 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570140|ref|NP_849371.2| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657820|gb|AEE83220.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 15/299 (5%)
Query: 42 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 100
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 46 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 101
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 161
Query: 161 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218
S SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G
Sbjct: 162 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 220
Query: 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 221 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 273
Query: 279 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 337
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 274 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNF 332
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.809 | 0.584 | 0.530 | 1.4e-73 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.397 | 0.440 | 0.308 | 1.5e-05 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 157/296 (53%), Positives = 208/296 (70%)
Query: 44 LVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 102
+ D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++PK
Sbjct: 50 VTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNIPK 105
Query: 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG-S 161
TTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG S
Sbjct: 106 TTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGS 165
Query: 162 NSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220
SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G E
Sbjct: 166 ASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYE 224
Query: 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280
RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+THG
Sbjct: 225 R---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHG 277
Query: 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN 336
D+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 278 DMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKN 333
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| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 86 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 146 GDGTYF---LQEYTIPRGSNS--FSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELV 197
GD F L+ TI G S F +D L + S ++IK + V+ G
Sbjct: 109 GDNHSFTEKLKRLTIKNGKTSLPFVFFDIMGLEAEEFHGSKTEDIIKA-VFGHVKDG--- 164
Query: 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 239
+ ++ S+ + + H +PS+ + V++++DG V
Sbjct: 165 YKFNEEQSIDYKDQ---HYTS-DPSLSDQCFCVVYIIDGKIV 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 347 347 0.00098 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 613 (65 KB)
Total size of DFA: 228 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.50u 0.09s 29.59t Elapsed: 00:00:03
Total cpu time: 29.50u 0.09s 29.59t Elapsed: 00:00:03
Start: Fri May 10 18:13:49 2013 End: Fri May 10 18:13:52 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_II002486 | hypothetical protein (575 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 347 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 SLLLIGPKGSGKSSLVNRISKVFENDKF 132
+LL+GP G+GKS L R++ N
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPV 28
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This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.98 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.98 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.98 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.98 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.98 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.98 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.98 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.98 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.98 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.98 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.96 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.94 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.94 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.91 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.9 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.88 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.86 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.86 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.85 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.84 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.84 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.83 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.82 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.82 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.79 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.79 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.79 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.78 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.77 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.77 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.77 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.76 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.73 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.72 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.69 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.66 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.66 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.64 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.63 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.62 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.62 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.61 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.55 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.54 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.52 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.49 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.44 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.42 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.41 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.37 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.34 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.29 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.28 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.27 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.27 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.27 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.25 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.21 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.04 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.04 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.01 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.99 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.99 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.98 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.98 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.83 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.82 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.82 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.7 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.67 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.65 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.63 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.61 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.58 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.51 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.51 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.48 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.4 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.38 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.38 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.37 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.35 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.34 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.32 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.31 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.31 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.28 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.25 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.23 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.23 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.23 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.23 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.21 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.2 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.2 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.19 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.18 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.18 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.17 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.14 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.09 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.08 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.08 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.06 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.05 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.03 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.03 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.02 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.01 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.0 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.99 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.99 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.98 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.97 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.96 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.95 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.94 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.93 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.91 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.91 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.9 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.9 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.9 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.89 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.87 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 97.86 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.86 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.86 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.86 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 97.85 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.85 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.85 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.83 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.83 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.82 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.82 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.8 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.8 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.79 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.75 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.73 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=388.75 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=187.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |++|||+|.+||+++|+||||||||||||||++|.+ |++|+|.++|.++...
T Consensus 1 ~mi~i~~l~K~fg~---~~V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 1 MMIEIKNLSKSFGD---KEV---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDK 69 (240)
T ss_pred CeEEEEeeeEEeCC---eEE---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccch
Confidence 47999999999986 345 556999999999999999999999999999999999 9999999999877410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
......|...++|||++++|+. ++.+|+.+++......++.+.++++.++|+++||.+
T Consensus 70 --------------~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 70 --------------KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred --------------hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 1233455666778888888887 889999998887788889999999999999999998
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.++.||.+||||||||||||||| |||||+||+ |+|+|+||| .+
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 45999999999999999999999 999999985 999999999 69
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+.+.||||+ ||++|+++++|+++++|.+|.++.++.|+..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 6999999999999999999999999998864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=376.06 Aligned_cols=214 Identities=14% Similarity=0.166 Sum_probs=189.2
Q ss_pred cEEEeeeEEEeCCC--ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~--~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
||++++|+|.|..+ ..+.+|++ |||+|++||+++|||.||||||||+|||++|.+ |++|+|+++|.++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~---vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDD---VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeecc---ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 68999999999652 23567555 999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. + +..+...|..++|+||+++++.. +|++|++++++..+ .+++++++++.++|+.+||++
T Consensus 73 l---~---------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 L---S---------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred C---C---------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 1 1 23344556667888888888874 99999999998654 778999999999999999998
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 45999999999999999999999 999999996 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
+.+.++|||++| |++|++++.|+..++|.+|+++-++.++...
T Consensus 203 ~Vvk~ic~rVav-m~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 203 EVVKRICDRVAV-LDQGRLVEEGTVSEVFANPKHAITQEFIGET 245 (339)
T ss_pred HHHHHHhhhheE-eeCCEEEEeccHHHhhcCcchHHHHHHHHhh
Confidence 688999999986 9999999999999999999999999998854
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=359.40 Aligned_cols=210 Identities=19% Similarity=0.266 Sum_probs=178.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+|.|+. ..+ ++|+||+|++||+++++|||||||||+||+|++|++ |++|+|+++|+++..
T Consensus 1 MI~~~nvsk~y~~---~~a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~-- 67 (309)
T COG1125 1 MIEFENVSKRYGN---KKA---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISD-- 67 (309)
T ss_pred CceeeeeehhcCC---cee---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeeccc--
Confidence 6899999999984 345 555999999999999999999999999999999999 999999999999871
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
..... -|+.+||++|....|+.+ |.||+.+.+. +.+++++.+++++.++|+.+||++..
T Consensus 68 -~d~~~-LRr~IGYviQqigLFPh~Tv~eNIa~VP~------------L~~w~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 68 -LDPVE-LRRKIGYVIQQIGLFPHLTVAENIATVPK------------LLGWDKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred -CCHHH-HHHhhhhhhhhcccCCCccHHHHHHhhhh------------hcCCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 11111 144566666666666555 5555555442 23567889999999999999999743
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
++++||++|||||||||.+|||| |||+++||+ |+|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 78999999999999999999999 999999996 999999999 79
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
+.+++|||++ |++|+++..++|++++.+|..+.++.+++..
T Consensus 199 A~kLadri~v-m~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 199 ALKLADRIAV-MDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred HHhhhceEEE-ecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 9999999986 9999999999999999999999888887754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=346.43 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=192.5
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+.++++||+++|+. ..+ |++|||+|++++++||+||||||||||||+++++....+....+|+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~---~~a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHA---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc---hhh---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 357999999999986 345 66699999999999999999999999999999999854444567999999999861
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..+.+.+.|...++|||.|+.|+.++++||++|.+.++..+ .+..+.+++.|+..+|.+++.+
T Consensus 79 -------------~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKD--- 141 (253)
T COG1117 79 -------------PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKD--- 141 (253)
T ss_pred -------------CCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHH---
Confidence 13456677788889999999999999999999999887766 7888999999999999887643
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+++.+..||||||||++||||| |||||+||+ ..|||+||| ..+
T Consensus 142 ----------rL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 142 ----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred ----------HhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 36889999999999999999999 999999986 899999999 589
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
++++|+++ |++.|+++|.|+++++|.+|.+..|+.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 99999997 599999999999999999999999888764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=368.10 Aligned_cols=212 Identities=15% Similarity=0.219 Sum_probs=181.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+.++++||+++|++ ..+ ++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.
T Consensus 3 ~~~l~i~~v~k~yg~---~~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~- 70 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDIT- 70 (352)
T ss_pred CceEEEEeeeeecCC---eeE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 467999999999984 456 455999999999999999999999999999999999 99999999999997
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.....++.+++ |||+..+|+. +|.+||++|++..+...++++++++.++|+.++|.+
T Consensus 71 -----~lpp~kR~ig~-----------VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------ 128 (352)
T COG3842 71 -----DVPPEKRPIGM-----------VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------ 128 (352)
T ss_pred -----CCChhhcccce-----------eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh------
Confidence 22222334444 4555555565 778888888884444556778999999999999998
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+.+++|++||||||||||||||| |||.|+||. |+|.|+|||
T Consensus 129 -----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 129 -----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred -----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 67999999999999999999999 999999983 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 326 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 326 (347)
.++..++|||+| |++|+|...|+|++++..|....+..|+...+.+
T Consensus 198 eEAl~msDrI~V-m~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 198 EEALAMSDRIAV-MNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243 (352)
T ss_pred HHHhhhccceEE-ccCCceeecCCHHHHhhCcchHHHHHHhCcceee
Confidence 589999999976 9999999999999999999999888888765544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=364.03 Aligned_cols=209 Identities=16% Similarity=0.185 Sum_probs=180.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+..|+++||++.|+... + ++++||+|++||+++|+||||||||||||+|+||.+ |++|+|.++|++++
T Consensus 1 M~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt- 68 (338)
T COG3839 1 MAELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT- 68 (338)
T ss_pred CcEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 35799999999998632 4 666999999999999999999999999999999999 99999999999987
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
...+++ .-.++||||..+++. +|++|++++++. +..+++++++++.++++.++|++
T Consensus 69 --------------~l~P~~--R~iamVFQ~yALyPhmtV~~Niaf~Lk~-~~~~k~ei~~rV~eva~~L~l~~------ 125 (338)
T COG3839 69 --------------DLPPEK--RGIAMVFQNYALYPHMTVYENIAFGLKL-RGVPKAEIDKRVKEVAKLLGLEH------ 125 (338)
T ss_pred --------------CCChhH--CCEEEEeCCccccCCCcHHHHhhhhhhh-CCCchHHHHHHHHHHHHHcCChh------
Confidence 122222 123456666677776 788888888874 34567899999999999999999
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|.+||||||||||||||| |||.|+||. |.|+|+|||
T Consensus 126 -----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 126 -----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred -----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 67999999999999999999999 999999983 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
.++..++|||+| |++|+|...|+|.+++.+|.+..+..+++...
T Consensus 195 ~EAmtladri~V-m~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~ 238 (338)
T COG3839 195 VEAMTLADRIVV-MNDGRIQQVGTPLELYERPANLFVAGFIGSPP 238 (338)
T ss_pred HHHHhhCCEEEE-EeCCeeeecCChHHHhhCccchhhhhhcCChh
Confidence 488999999975 99999999999999999999998888887643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=339.33 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=173.4
Q ss_pred CcEEEeeeEEEeCCCce-eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~-~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++|+++.|+.+.. .++ +++|||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~ 73 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAP 73 (252)
T ss_pred ceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCc
Confidence 57999999999976541 235 555999999999999999999999999999999999 999999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.+.....++.+.++|||+..- +-+. ++.+-+..++..+. . ...++++.++|+.+||+++
T Consensus 74 ---~~~~~~~~~~VQmVFQDp~~S---------LnP~~tv~~~l~Epl~~~~-~--~~~~~~i~~~L~~VgL~~~----- 133 (252)
T COG1124 74 ---KKRAKAFYRPVQMVFQDPYSS---------LNPRRTVGRILSEPLRPHG-L--SKSQQRIAELLDQVGLPPS----- 133 (252)
T ss_pred ---cccchhhccceeEEecCCccc---------cCcchhHHHHHhhhhccCC-c--cHHHHHHHHHHHHcCCCHH-----
Confidence 111112233445566654432 1222 66666666665432 2 3344559999999999975
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|++|||||+||+|||||| |||||+||. +.|+|+|||
T Consensus 134 -----------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 134 -----------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred -----------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 57999999999999999999999 999999983 889999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
..+..+|||++| |++|++++.++..+++..|.|++++.++.+.-.
T Consensus 203 ~~v~~~cdRi~V-m~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~~ 247 (252)
T COG1124 203 ALVEHMCDRIAV-MDNGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247 (252)
T ss_pred HHHHHHhhheee-eeCCeEEEeechhhhhcCCccHHHHHHHHhhhc
Confidence 578899999986 999999999999999999999999999876543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=336.00 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=178.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|++++|+++|++ ..+ ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~fG~---~~I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVI---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCC---EEE---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 568999999999986 344 566999999999999999999999999999999999 999999999999863
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.+....+.+ ++++|++| |.-++|.. +|++||+++++.+...++..+++.+...|+.+||.+..
T Consensus 75 ls~~~~~~i-r~r~GvlF-----------Q~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~---- 138 (263)
T COG1127 75 LSEEELYEI-RKRMGVLF-----------QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA---- 138 (263)
T ss_pred cCHHHHHHH-HhheeEEe-----------eccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----
Confidence 322222111 23344444 44455544 77788888887788888999999999999999999842
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
++.+|++|||||++|++||||| ||||+|||+ |.|++||||
T Consensus 139 ------------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 139 ------------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred ------------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 5899999999999999999999 999999996 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+.+..+|||+++ +.+|+|+..|+++++... .+++.+.|+.
T Consensus 207 ~s~~~i~Drv~~-L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 207 DSLLTIADRVAV-LADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHHhhhceEEE-EeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 688999999975 999999999999999875 6678777764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=333.03 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=164.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+++++++++.|+. ..+ |+|+||+|.+||+++||||||||||||+|+|+||.+ |++|+|.++|+.+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 46899999999986 456 555999999999999999999999999999999999 99999999998764
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+..-.++|||+..+++. ++.+||.+++.... .++.+.++++.++++.+||.+
T Consensus 69 ------------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ------------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ------------------CCCCCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 112223445666677777 88999998887543 445667779999999999998
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+.+++|++|||||||||+||||| |||+++||. ++||++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 66999999999999999999999 999999984 899999999 6
Q ss_pred HHHhcccEEEEEeeC--CeEeecCCcccccCCCCCCChHHHHHHHHHHHHHHH
Q 019048 281 DLLSLTDRARIRTYL--GELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 331 (347)
Q Consensus 281 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 331 (347)
++..++|||++ |.+ |+|...-+.. +..|.......+.....++...|.
T Consensus 193 EAv~LsdRivv-l~~~P~~i~~~~~i~--l~rpR~~~~~~f~~l~~~i~~~L~ 242 (248)
T COG1116 193 EAVYLADRVVV-LSNRPGRIGEELEID--LPRPRIRGDPEFLELREELLEELR 242 (248)
T ss_pred HHHhhhCEEEE-ecCCCcceeeEEecC--CCCCccccChHHHHHHHHHHHHHh
Confidence 89999999965 998 4443332221 223332233444444455544443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=345.11 Aligned_cols=230 Identities=17% Similarity=0.222 Sum_probs=185.6
Q ss_pred cEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++||+.+|... ..+.+++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.|+|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 47999999999543 34678666 999999999999999999999999999999997322224679999999987643
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC-ChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
+..+...+..+.+++++|++.... || ..++.+++......+... .+++..+++.++|+.+||++..
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sL-----nP---v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~----- 144 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSL-----NP---VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE----- 144 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhc-----CC---hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH-----
Confidence 333222455666777777765421 11 126667777766655544 4667888999999999998631
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
..+++||++|||||||||+||.|| ||||++||- |+|+|+||| .
T Consensus 145 ---------~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 145 ---------RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred ---------HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 157999999999999999999999 999999872 999999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 326 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 326 (347)
.++++||||+| |+.|+|||.|+.+++|.+|.|+||+.++.++-.+
T Consensus 216 vva~~aDri~V-MYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 216 VVAEIADRVAV-MYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHhcceEEE-EECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 78999999986 9999999999999999999999999999987655
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=323.17 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=151.1
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+++++||++.|+.+. .+.+|++ +||+|++||++||+|||||||||||++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~---v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKD---VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEeccc---ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999996443 2567555 999999999999999999999999999999999 9999999999998743
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.......+.++.+||++|.......+ ++.+||.++...... .....++++.++++.+||.+..
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~l----------tv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~------ 135 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDL----------TVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRL------ 135 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCC----------CHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhh------
Confidence 33333334455667777666555444 444555444432222 2225677888999999998732
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~~ 282 (347)
.+++|.+||||||||||||||| ||||.+||. |+|+||||| ..+
T Consensus 136 ----------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 136 ----------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred ----------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 2488999999999999999999 999999984 889999999 588
Q ss_pred HhcccEEEEEeeCCeEe
Q 019048 283 LSLTDRARIRTYLGELL 299 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv 299 (347)
+.+|||++ +|++|++.
T Consensus 206 A~~~dr~i-~l~dG~~~ 221 (226)
T COG1136 206 AKYADRVI-ELKDGKIE 221 (226)
T ss_pred HHhCCEEE-EEeCCeee
Confidence 88999996 59999943
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=323.37 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=159.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||++.|+++. ++ |++|||+|++||++|||||||||||||||+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~~--~a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGH--QA---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCc--ee---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 4799999999996554 44 666999999999999999999999999999999999 9999999999987621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhc-------cCCChHHHHHHHHHHHHHCCCCc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~-------~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
. +-...+++...+++||++++.+. ++++||..|...+ -++...+.+..+.++|+++|+.+
T Consensus 72 ~------------~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~ 139 (258)
T COG3638 72 K------------GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD 139 (258)
T ss_pred c------------hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Confidence 1 11122334444555555555555 5666665554321 13345667788899999999988
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 275 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiI 275 (347)
.+.++..+|||||||||+||||| |||+++||+ |.|+|
T Consensus 140 -----------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi 202 (258)
T COG3638 140 -----------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202 (258)
T ss_pred -----------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE
Confidence 45788999999999999999999 999999985 99999
Q ss_pred EEec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 276 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 276 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+..| +.+.+||||++- |++|+++.+|++.++
T Consensus 203 ~nLH~vdlA~~Y~~Riig-l~~G~ivfDg~~~el 235 (258)
T COG3638 203 VNLHQVDLAKKYADRIIG-LKAGRIVFDGPASEL 235 (258)
T ss_pred EEechHHHHHHHHhhheE-ecCCcEEEeCChhhh
Confidence 9999 799999999965 999999999999764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=332.34 Aligned_cols=216 Identities=17% Similarity=0.224 Sum_probs=179.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE---eCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 147 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~---~i~ 147 (347)
+|.++|+++.|+. ..+ ++||||+|+.||.+||+||||||||||||+|+||.. |++|.|.++|+ |.+
T Consensus 2 ~i~i~~~~~~~~~---~~a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGA---FGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhccc---ccc---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 4889999999976 455 445999999999999999999999999999999999 99999999999 543
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccC-CChHHHHHHHHHHHHHCCCCccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
......+++||++|+. .+|+. +|.+||+||+...+. .++..++.++.++|+.+.|++
T Consensus 71 ------~~~~~~R~VGfvFQ~Y-----------ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ------NLAVRDRKVGFVFQHY-----------ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ------ccchhhcceeEEEech-----------hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 2222333455655554 44554 778888888865533 346788999999999999999
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
+.++||.+||||||||||+|||| |||+++||. |.|.++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 77999999999999999999999 999999983 999999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHHHHHHHHh
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 332 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (347)
+++.++|||++ +|++|+|...|++++++..|..+....+++..+.+...+..
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~~~v~~ 250 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVIL 250 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceeccceeec
Confidence 68999999996 59999999999999999999988877777665554443333
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=331.37 Aligned_cols=221 Identities=18% Similarity=0.203 Sum_probs=187.3
Q ss_pred CcEEEeeeEEEeCCCce------------------eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCC
Q 019048 70 SLTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~------------------~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~ 131 (347)
..|+++||++-|+.+.. .-.+-+++|+||+|++||++.|+|-||||||||+|+|++|.+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 45889999999875311 001112556999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHH
Q 019048 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM 210 (347)
Q Consensus 132 ~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i 210 (347)
|++|+|+++|.++...+...-..+. +....+|||++.++|. +|.+|+.+|++. ++.++.+.++++
T Consensus 80 --pt~G~ilv~g~di~~~~~~~Lr~~R-----------r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev-~Gv~~~er~~~a 145 (386)
T COG4175 80 --PTRGEILVDGKDIAKLSAAELRELR-----------RKKISMVFQSFALLPHRTVLENVAFGLEV-QGVPKAEREERA 145 (386)
T ss_pred --CCCceEEECCcchhcCCHHHHHHHH-----------hhhhhhhhhhhccccchhHhhhhhcceee-cCCCHHHHHHHH
Confidence 9999999999998733222222222 2335668888888887 999999999984 467788999999
Q ss_pred HHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------
Q 019048 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 270 (347)
Q Consensus 211 ~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------- 270 (347)
.++++.+||.. +.++||++|||||||||.||||| |||+|+||+
T Consensus 146 ~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 146 LEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred HHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 99999999998 66999999999999999999999 999999986
Q ss_pred ------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 271 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 271 ------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
++|||+||| +++.++.|||++ |++|+|+..|+|++++.+|...|+..|+...+.
T Consensus 209 ~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~ 270 (386)
T COG4175 209 ELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNVDR 270 (386)
T ss_pred HHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCCh
Confidence 999999999 799999999987 999999999999999999999999999885533
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=327.72 Aligned_cols=196 Identities=13% Similarity=0.152 Sum_probs=159.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||++.|+. ..+ |+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|+++...
T Consensus 2 ~L~~~~ls~~y~~---~~i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~- 69 (258)
T COG1120 2 MLEVENLSFGYGG---KPI---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASL- 69 (258)
T ss_pred eeEEEEEEEEECC---eeE---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhc-
Confidence 6899999999984 234 666999999999999999999999999999999999 9999999999998621
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
+...+ .+.++|++|......++ |++-+.+ |...+ ......+.++.+.++|+.+|+.+
T Consensus 70 --~~kel-Ak~ia~vpQ~~~~~~~~tV~d~V~~-----------GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~----- 130 (258)
T COG1120 70 --SPKEL-AKKLAYVPQSPSAPFGLTVYELVLL-----------GRYPHLGLFGRPSKEDEEIVEEALELLGLEH----- 130 (258)
T ss_pred --CHHHH-hhhEEEeccCCCCCCCcEEeehHhh-----------cCCcccccccCCCHhHHHHHHHHHHHhCcHH-----
Confidence 11111 23567888876544444 5554433 32111 11224556668999999999998
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
++++...+||||||||+.||||| ||||+.||- |+|+|+++|
T Consensus 131 ------------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 131 ------------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred ------------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 67999999999999999999999 999999882 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+.+|||++++ |++|+++..|+|++++..
T Consensus 199 lN~A~ryad~~i~-lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 199 LNLAARYADHLIL-LKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHhCCEEEE-EECCeEEeecCcchhcCH
Confidence 699999999975 999999999999888764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=307.83 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=186.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++.|+++|+.++|+.. .+ |++|||+-++|++++|||.|||||||||+||+-|.. |+.|.|.++|+++..
T Consensus 4 ~~~l~v~dlHK~~G~~---eV---LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEH---EV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccc---hh---hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 4569999999999874 34 666999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..-..-.+.- .-.-.++..+...++|||++++++. ++.+|+...+...-+.++.+..++++.+|.++|+.++
T Consensus 73 -k~~~~G~l~~-ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek----- 145 (256)
T COG4598 73 -KRDKDGQLKP-ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK----- 145 (256)
T ss_pred -eeCCCCCeee-CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-----
Confidence 0000000000 0011234455566789999999988 9999999877655566788889999999999999984
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
.+.||..|||||+||++||||| |||||+||+ |.|++++|| .
T Consensus 146 ------------~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 146 ------------ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred ------------hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 4899999999999999999999 999999985 999999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
++...+..++ |+++|.|-++|+|+++|.+|..+..+.|+.+
T Consensus 214 FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 214 FARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred HHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHHh
Confidence 8999999995 6999999999999999999999988888764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=338.27 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+++|+.++ ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996322 2345 566999999999999999999999999999999999 9999999999988521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. +.....++.++|++|+...+.. .++.+|+.++... ...++.+.++++.++++.+||.+
T Consensus 73 ~~-~~l~~~r~~Ig~v~Q~~~l~~~----------~tv~eni~~~~~~-~~~~~~~~~~~v~e~l~~vgL~~-------- 132 (343)
T TIGR02314 73 SN-SELTKARRQIGMIFQHFNLLSS----------RTVFGNVALPLEL-DNTPKDEIKRKVTELLALVGLGD-------- 132 (343)
T ss_pred CH-HHHHHHhcCEEEEECCcccccc----------CcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 11 1111123455666665443322 2555565554432 22345567788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
.++++|.+||||||||++||||| ||||++||. |.|||+||| +.
T Consensus 133 ---------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 133 ---------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46899999999999999999999 999999984 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+.++||++++ |++|++++.|++++++..|.++.++.++..
T Consensus 204 v~~~~d~v~v-l~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 204 VKRICDCVAV-ISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 8899999975 999999999999999999888887777654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=305.90 Aligned_cols=193 Identities=20% Similarity=0.219 Sum_probs=160.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||++.|+.+. .+ |+||||+|++||++-|+||||||||||+|+|++..+ |++|+|.++|.++...
T Consensus 1 mI~f~~V~k~Y~~g~--~a---L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l- 69 (223)
T COG2884 1 MIRFENVSKAYPGGR--EA---LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRL- 69 (223)
T ss_pred CeeehhhhhhcCCCc--hh---hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecccc-
Confidence 689999999998763 46 555999999999999999999999999999999999 9999999999998621
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
...+..+-|+++|+++||.+.... .++++|+++++... +.+..++++++.++|+.+||.++
T Consensus 70 ~~~~iP~LRR~IGvVFQD~rLL~~----------~tvyeNVA~pL~v~-G~~~~~i~~rV~~~L~~VgL~~k-------- 130 (223)
T COG2884 70 KGREIPFLRRQIGVVFQDFRLLPD----------RTVYENVALPLRVI-GKPPREIRRRVSEVLDLVGLKHK-------- 130 (223)
T ss_pred cccccchhhheeeeEeeecccccc----------chHhhhhhhhhhcc-CCCHHHHHHHHHHHHHHhccchh--------
Confidence 122233346677777777665432 26677777777644 44568899999999999999984
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
++..|.+||||||||++||||+ ||||.+||+ |+||||.|| ..+.
T Consensus 131 ---------~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 131 ---------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred ---------hhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 4899999999999999999999 999999995 999999999 4677
Q ss_pred hcccEEEEEeeCCeEeecCC
Q 019048 284 SLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~ 303 (347)
.+.-|++ .+++|+++.+..
T Consensus 202 ~~~~rvl-~l~~Grl~~d~~ 220 (223)
T COG2884 202 RMRHRVL-ALEDGRLVRDES 220 (223)
T ss_pred hccCcEE-EEeCCEEEeccc
Confidence 7778885 599999987654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=347.84 Aligned_cols=219 Identities=16% Similarity=0.208 Sum_probs=178.3
Q ss_pred CCCcEEEeeeEEEeCCC--------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE
Q 019048 68 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I 139 (347)
..++++++||++.|... ..+.++++ |||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~---VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD---VSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeee---eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 45789999999999741 22566555 999999999999999999999999999999999 999999
Q ss_pred EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHh--hHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHH
Q 019048 140 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--IKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216 (347)
Q Consensus 140 ~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~--~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~ 216 (347)
.++|.+.. .. .....-.++.+.+ +|||+.. .+. +|.+.+..++..+......+.++++.++++.
T Consensus 349 ~~~g~~~~-~~-~~~~~~~r~~~Qm-----------vFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 349 IFDGQDLD-LT-GGELRRLRRRIQM-----------VFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLEL 415 (539)
T ss_pred EEeCcccc-cc-cchhhhhhhheEE-----------EEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHH
Confidence 99998832 11 1111111223334 4555443 233 7888888877765544456667789999999
Q ss_pred CCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------
Q 019048 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 270 (347)
Q Consensus 217 ~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------- 270 (347)
+||.+. +++++|++||||||||++||||| |||||+||.
T Consensus 416 VgL~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 416 VGLPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred cCCCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 999864 57999999999999999999999 999999984
Q ss_pred CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 271 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 271 g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
|.|+|+||| +.+..+||||+| |++|+|++.|+.+.+|..|.|+||+.++++..
T Consensus 480 g~t~lfISHDl~vV~~i~drv~v-m~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 480 GLTYLFISHDLAVVRYIADRVAV-MYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred CCEEEEEeCCHHHHHhhCceEEE-EECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 999999999 578899999976 99999999999999999999999999988653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=344.72 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=186.7
Q ss_pred CcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++||++.|... ..+.+++| |||+|.+||++||||+|||||||++++|.|+++.+. ...+|+|.|+|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~---vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRD---VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLG 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeec---ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhc
Confidence 589999999999533 33467555 999999999999999999999999999999998432 2358999999998764
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
........+..+.+++++|++.... || ..++.+.+......+......+.++++.++|+.+||++..
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~sl-----nP---~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~----- 146 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSL-----NP---VMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE----- 146 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhc-----Cc---hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh-----
Confidence 4333344455667788888765431 11 1266677777777676666788899999999999998743
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
..++||++||||||||++||+|| ||||++||. |+++|+||| .
T Consensus 147 ----------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 147 ----------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred ----------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 22579999999999999999999 999999983 999999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
.++++|||++| |++|+++|.|+++++|.+|.|+||+.++.+...
T Consensus 217 Vva~~aDrv~V-m~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~ 260 (539)
T COG1123 217 VVAELADRVVV-MYKGEIVETGPTEEILSNPQHPYTRGLLAAVPR 260 (539)
T ss_pred HHHHhcCeEEE-EECCEEEEecCHHHHHhccCCcccHHHHhhCCC
Confidence 78999999975 999999999999999999999999999887543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=336.73 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=167.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~- 70 (356)
T PRK11650 2 AGLKLQAVRKSYDGKT--QV---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE- 70 (356)
T ss_pred CEEEEEeEEEEeCCCC--EE---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC-
Confidence 4699999999993222 34 666999999999999999999999999999999999 999999999998851
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+..+++.++++.++|++
T Consensus 71 -----~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 126 (356)
T PRK11650 71 -----LEPADRDIAMVFQNYALYPHM----------SVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP-------- 126 (356)
T ss_pred -----CCHHHCCEEEEeCCccccCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111123456666665444332 4555555554321 2344566678899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| ++
T Consensus 127 ---------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 127 ---------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE 197 (356)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999983 799999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||++++ |++|++++.|++++++.+|.+.++..++.
T Consensus 198 a~~l~D~i~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 198 AMTLADRVVV-MNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHhCCEEEE-EeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 8999999975 99999999999999999988777666555
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=318.34 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=167.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++++++|++|+|+++ ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAA---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCC--cee---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 578999999999765 244 666999999999999999999999999999999999 999999999988641
Q ss_pred ccccccccCCCccceeeccccccccchhhhhH--hhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~--~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.......+...++|||||. ++..+|.+.+++++... ..+.+++++++.++++.+|+.+
T Consensus 71 -------------~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~------ 130 (235)
T COG1122 71 -------------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEE------ 130 (235)
T ss_pred -------------hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchh------
Confidence 0122333444555566663 33447888888888754 3455678999999999999998
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
++++.|++||||||||++||.+| ||||++||+ |+|+|++||
T Consensus 131 -----------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~ 199 (235)
T COG1122 131 -----------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL 199 (235)
T ss_pred -----------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH
Confidence 56999999999999999999999 999999984 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+..+|||+++ |++|+++.+|++.+++.+.
T Consensus 200 ~~~~~~ad~v~v-l~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 200 ELVLEYADRVVV-LDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHhhCCEEEE-EECCEEeecCCHHHHhhhh
Confidence 689999999975 9999999999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=328.78 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=170.6
Q ss_pred CcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++||++.|+... .+.+ |+||||+|++||++||+|+||||||||+++|+|+++.. ..|++|+|.++|+++..
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred ceEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 4799999999996432 1346 55599999999999999999999999999999999711 11489999999999752
Q ss_pred CccccccccCCCccceeeccccc-cc-cchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRS-LS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~-~~-~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
........+.++.++|++|+... +. .+ ++.+++......+......+.++++.++++.+||.+..
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--- 144 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCY----------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--- 144 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---
Confidence 21111112233457788887532 11 11 22223322222222233456677899999999997511
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
..+++++++|||||+||++||||| ||||++||. |.|+|+|||
T Consensus 145 -----------~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 145 -----------SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred -----------HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 146899999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
+.+.++||||++ |++|++++.|++++++.+|.|+|++.++.+..
T Consensus 214 l~~~~~~adri~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 214 LALVAEAAHKIIV-MYAGQVVETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHHHhhCCCChHHHHHHHhCc
Confidence 467789999975 99999999999999999999999998887653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=330.38 Aligned_cols=222 Identities=13% Similarity=0.183 Sum_probs=171.9
Q ss_pred CCCcEEEeeeEEEeCCC----------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 68 IGSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
.+++|+++||+++|+.+ ..+.+ ++|+||+|++||+++|+|+||||||||+++|+|+++ |++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G 76 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDG 76 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCc
Confidence 45789999999999631 12456 555999999999999999999999999999999999 9999
Q ss_pred EEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhcc-CCChHHHHHHHHHHHH
Q 019048 138 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 215 (347)
Q Consensus 138 ~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~ 215 (347)
+|.++|+++...... .....++.++|++|+... .+++ .++.+|+.++..... ...+.+.++++.++++
T Consensus 77 ~I~~~G~~i~~~~~~-~~~~~r~~i~~v~Q~~~~---------~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 146 (331)
T PRK15079 77 EVAWLGKDLLGMKDD-EWRAVRSDIQMIFQDPLA---------SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMML 146 (331)
T ss_pred EEEECCEECCcCCHH-HHHHHhCceEEEecCchh---------hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 999999987522111 111113346666666421 1111 144555554433221 2345566778889999
Q ss_pred HCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------
Q 019048 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 270 (347)
Q Consensus 216 ~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------- 270 (347)
.++|.+. +++++|++|||||+||++||||| ||||++||.
T Consensus 147 ~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 147 KVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred HcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999642 46899999999999999999999 999999873
Q ss_pred -CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 271 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 271 -g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
|.|+|+||| +.+..+|||+++ |++|++++.|++++++.+|.|+|++.++.+..
T Consensus 211 ~~~til~iTHdl~~~~~~~dri~v-l~~G~ive~g~~~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 211 MGLSLIFIAHDLAVVKHISDRVLV-MYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHcCCCCHHHHHHHhhCC
Confidence 789999999 577889999975 99999999999999999999999988877654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=352.24 Aligned_cols=229 Identities=10% Similarity=0.141 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhhhhhhcc-------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHH
Q 019048 50 RDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 122 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~-------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~ 122 (347)
...|+.|.++-+|..... ....|+++||+|.|+.+..+.+ |+|+||+|++||++|||||||+||||++++
T Consensus 437 As~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGsGKSTiasL 513 (716)
T KOG0058|consen 437 ASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGSGKSTIASL 513 (716)
T ss_pred hHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCCCHHHHHHH
Confidence 555777877777664322 2345999999999987766667 555999999999999999999999999999
Q ss_pred HhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCC
Q 019048 123 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202 (347)
Q Consensus 123 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~ 202 (347)
|.++|. |++|+|.+||+||. .+...-++..+++|.|+|-+|..++.+||.+|..
T Consensus 514 L~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~------ 567 (716)
T KOG0058|consen 514 LLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD------ 567 (716)
T ss_pred HHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcCCC------
Confidence 999999 99999999999997 4555666677788888888888899999998775
Q ss_pred hHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---
Q 019048 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 270 (347)
Q Consensus 203 ~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 270 (347)
....++++.++++.+..+.+-..|+++.++|+|++. +||||||||+|||||| ||.||+||.
T Consensus 568 -~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 -NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred -CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 223567778888899988888999999999999954 8999999999999999 999999983
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
++|||+|.| -...+.||+|+| +++|++++.|++++++..+..-|
T Consensus 641 ~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivv-i~~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 641 YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVV-IDKGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEE-EcCCeEEecccHHHHhhCcccHH
Confidence 899999999 467778999965 99999999999999998875444
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=358.76 Aligned_cols=233 Identities=12% Similarity=0.147 Sum_probs=191.1
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhhhccC--------CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECC
Q 019048 40 SWDSLVDQRRRDAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 111 (347)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGp 111 (347)
.|......+....|+.++++.+++..... ..-++++||+|+|+..++ .+ |+|+||+|++||++||||+
T Consensus 432 ~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~ 507 (709)
T COG2274 432 LWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGR 507 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECC
Confidence 34444455567779999998887632211 134999999999976543 34 6669999999999999999
Q ss_pred CCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhh
Q 019048 112 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV 191 (347)
Q Consensus 112 nGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v 191 (347)
||||||||+|+|+|+++ |++|+|.+||.|+. .+.....|...++|.|+..++..++.+|+
T Consensus 508 SGsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi 567 (709)
T COG2274 508 SGSGKSTLLKLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENI 567 (709)
T ss_pred CCCCHHHHHHHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence 99999999999999999 99999999999987 34455555566666666666666777777
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------c
Q 019048 192 RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------N 262 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------D 262 (347)
.++.. ....+++.+++...|+.+.+..+|+++.+.|.|. ...||||||||++||||| |
T Consensus 568 ~l~~p-------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~------G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 568 ALGNP-------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG------GANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred hcCCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccccC------CCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 75443 1224677888999999999999999999999887 458999999999999999 9
Q ss_pred hhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 263 CPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 263 EPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
||||+||. |+|+|+||| ....+.||||+| |++|+++++|++++++..
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV-l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV-LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE-ccCCceeccCCHHHHHHh
Confidence 99999984 899999999 688889999975 999999999999999876
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=327.07 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=170.4
Q ss_pred CCcEEEeeeEEEeCCC-------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 69 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~-------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
+++|+++||++.|+.. ..+.+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 3689999999999631 12456 555999999999999999999999999999999999 99999999
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 142 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 142 ~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
+|+++...... .....++.++|++|+.... +.+. ++.+++..+...+......+.++++.++++.+||.
T Consensus 75 ~g~~l~~~~~~-~~~~~r~~i~~v~Q~~~~~---------l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 75 QGQDLLKADPE-AQKLLRQKIQIVFQNPYGS---------LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred CCEEcCcCCHH-HHHHHhCCEEEEEcCchhh---------cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC
Confidence 99997522111 1111234567777775311 1111 23333333322222233455667889999999997
Q ss_pred cccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ti 274 (347)
+. .++++|++|||||+||++||||| ||||++||. |.|+
T Consensus 145 ~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 208 (327)
T PRK11308 145 PE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSY 208 (327)
T ss_pred hH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 42 45899999999999999999999 999999873 8999
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
|+||| ..+.++||++++ |++|++++.|++++++.+|.|+|++.++.+..
T Consensus 209 l~iTHdl~~~~~~adrv~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 209 VFISHDLSVVEHIADEVMV-MYLGRCVEKGTKEQIFNNPRHPYTQALLSATP 259 (327)
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHHhCC
Confidence 99999 467789999975 99999999999999999999999998887653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=327.73 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=170.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTV---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTH 72 (351)
T ss_pred CcEEEEEeEEEEECC---eEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 468999999999974 235 666999999999999999999999999999999999 999999999998851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ ++.+|+.++... +..++.+..+++.++++.++|.+
T Consensus 73 ------~~~~~r~ig~vfQ~~~lfp~~----------tv~eNi~~~l~~-~~~~~~~~~~~v~~~l~~~gl~~------- 128 (351)
T PRK11432 73 ------RSIQQRDICMVFQSYALFPHM----------SLGENVGYGLKM-LGVPKEERKQRVKEALELVDLAG------- 128 (351)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------CHHHHHHHHHhH-cCCCHHHHHHHHHHHHHHcCCch-------
Confidence 111233455666555444332 555666665432 22345667788999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 129 ----------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 129 ----------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999883 799999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
++..+||||++ |++|+++..|++++++.+|...++..++..
T Consensus 199 e~~~laD~i~v-m~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 199 EAFAVSDTVIV-MNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 78899999975 999999999999999999988877777664
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=295.73 Aligned_cols=195 Identities=17% Similarity=0.253 Sum_probs=158.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|.+++|.++|+.-.- ..+++|+.||++||+||||||||||+|+|+|+.. |.+|.|+++|++.+..
T Consensus 1 ~l~L~~V~~~y~~~~~--------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~~- 66 (231)
T COG3840 1 MLALDDVRFSYGHLPM--------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTAS- 66 (231)
T ss_pred CccccceEEeeCcceE--------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCcC-
Confidence 4678999999975221 2899999999999999999999999999999999 9999999999998621
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.-.++.+++.||+. ++|.. +|..|+.+|....-.. ..+.+++++.++.++||..
T Consensus 67 -----~P~~RPVSmlFQEn-----------NLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~-------- 121 (231)
T COG3840 67 -----PPAERPVSMLFQEN-----------NLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAG-------- 121 (231)
T ss_pred -----CcccCChhhhhhcc-----------ccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhh--------
Confidence 11222334455544 44444 6666666665422222 3567788999999999998
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++.|.+|||||||||++||+| |||+|+||+ +.|++|||| ++
T Consensus 122 ---------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 122 ---------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred ---------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 67999999999999999999999 999999985 899999999 79
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 314 (347)
+.+++||++ ++++|+|...|+.++++.....+
T Consensus 193 a~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~~~ 224 (231)
T COG3840 193 AARIADRVV-FLDNGRIAAQGSTQELLSGKASA 224 (231)
T ss_pred HHHhhhceE-EEeCCEEEeeccHHHHhccCChH
Confidence 999999996 59999999999999998775543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=325.40 Aligned_cols=224 Identities=13% Similarity=0.156 Sum_probs=170.8
Q ss_pred CCCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC---CcEEEECC
Q 019048 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 143 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~---~G~I~~~g 143 (347)
.+++|+++||++.|+.+ ..+.+ ++||||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 45789999999999532 22456 555999999999999999999999999999999998 75 99999999
Q ss_pred EeCCCCccccccccCCCccceeeccccc-c-ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 144 SVGDGTYFLQEYTIPRGSNSFSLYDTRS-L-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 144 ~~i~~~~~~~~~~~~r~~~~~~~~~~~~-~-~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+++......+...+.++.++|++|+... + ..+ ++.+++......+......+..+++.++++.++|++
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYM----------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 9986221111111223456777777531 1 111 223333332222222334556678899999999975
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 275 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiI 275 (347)
.. +.++++|++|||||+||++||||| ||||++||. |.|+|
T Consensus 151 ~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til 216 (330)
T PRK09473 151 AR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII 216 (330)
T ss_pred hH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 135789999999999999999999 999999883 78999
Q ss_pred EEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 276 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 276 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
+||| +.+..+|||+++ |++|++++.|++++++.+|.|+|++.++.+..
T Consensus 217 ~iTHdl~~~~~~~Dri~v-m~~G~ive~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 217 MITHDLGVVAGICDKVLV-MYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EEECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999 467789999975 99999999999999999999999999887653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=326.95 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=169.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA---FTA---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITR 70 (353)
T ss_pred CcEEEEEEEEEEeCC---eEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 457999999999974 234 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ ++.+|+.++... +..++.+.++++.++++.++|++
T Consensus 71 ------~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~-~~~~~~~~~~~~~~~l~~l~L~~------- 126 (353)
T TIGR03265 71 ------LPPQKRDYGIVFQSYALFPNL----------TVADNIAYGLKN-RGMGRAEVAERVAELLDLVGLPG------- 126 (353)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------cHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCc-------
Confidence 111133456666655444333 455555555432 12345566788999999999988
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
++++++.+||||||||++||||| |||+++||. |.|+|+||| +
T Consensus 127 ----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 127 ----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999983 799999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
++..+||++++ |++|++++.|++++++.+|....+..++..
T Consensus 197 ea~~l~d~i~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 237 (353)
T TIGR03265 197 EALSMADRIVV-MNHGVIEQVGTPQEIYRHPATPFVADFVGE 237 (353)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhcCC
Confidence 78899999975 999999999999999999887776666553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=310.70 Aligned_cols=180 Identities=20% Similarity=0.312 Sum_probs=158.6
Q ss_pred CCcEEEeeeEEEeCCCc------eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC
Q 019048 69 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~------~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~ 142 (347)
+++++++||++.|..+. .+.+++| |||+|++||+++|||+||||||||.|+|.||++ |++|+|+|+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 36799999999996432 2567555 999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
|+++.. +. ..+..+++.++|+.+|+..+
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 988751 11 23456788999999998764
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
++.++|++|||||+||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 47999999999999999999999 999999983 999999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
||| ..+..+|||++| |+.|+|++.|+.+++|.+|.|+||+.++.+...
T Consensus 166 IsHDL~vv~~isdri~V-My~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIAV-MYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEEE-EecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 478889999986 999999999999999999999999999987543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=309.47 Aligned_cols=198 Identities=18% Similarity=0.246 Sum_probs=158.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++|++++|+.. . + |+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.+.|++...
T Consensus 2 ~~~i~v~nl~v~y~~~-~--v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR-P--V---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE-e--e---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4679999999999753 3 4 666999999999999999999999999999999999 999999999987541
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc---CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
...+..++|++|... +. .-+|.+|.+-+..+..... ....+..++++.++|+++|+.+
T Consensus 71 -------~~~~~~IgYVPQ~~~-~d-------~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~---- 131 (254)
T COG1121 71 -------RRKRLRIGYVPQKSS-VD-------RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---- 131 (254)
T ss_pred -------cccCCeEEEcCcccc-cC-------CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh----
Confidence 111346788888652 11 1123345555555422111 1123445789999999999998
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
+.++...+|||||+|||.||||| ||||+|+|. |+||+||||
T Consensus 132 -------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 132 -------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred -------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999999999999999999999 999999873 999999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
..+..++|++ + +=+++++..|++++++..+
T Consensus 199 L~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~ 229 (254)
T COG1121 199 LGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEE 229 (254)
T ss_pred cHHhHhhCCEE-E-EEcCeeEeccChhhccCHH
Confidence 5889999999 4 5688999999999987653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=326.63 Aligned_cols=210 Identities=14% Similarity=0.164 Sum_probs=170.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEV---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITH 80 (375)
T ss_pred CceEEEEEEEEEECC---eEE---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 467999999999974 234 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 81 ------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~------- 136 (375)
T PRK09452 81 ------VPAENRHVNTVFQSYALFPHM----------TVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE------- 136 (375)
T ss_pred ------CCHHHCCEEEEecCcccCCCC----------CHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111123456666665444332 4555665554322 2344556778899999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+++++|.+|||||||||+||||| |||+++||. |.|+|+||| +
T Consensus 137 ----------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 137 ----------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56999999999999999999999 999999883 799999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
++..+||++++ |++|++++.|++++++.+|.+.++..++...+
T Consensus 207 ea~~laDri~v-l~~G~i~~~g~~~~i~~~p~~~~~a~~~g~~n 249 (375)
T PRK09452 207 EALTMSDRIVV-MRDGRIEQDGTPREIYEEPKNLFVARFIGEIN 249 (375)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcCccc
Confidence 78899999975 99999999999999999998888777776433
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=325.49 Aligned_cols=207 Identities=14% Similarity=0.214 Sum_probs=167.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 ~L~i~~l~~~~~~---~~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGR---TQV---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCC---eEE---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 4899999999975 234 666999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....++.++|++|+...+..+ ++.+|+.++.... ...+..+..+++.++++.++|++
T Consensus 69 ----~~~~~r~i~~v~Q~~~l~p~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------ 128 (353)
T PRK10851 69 ----LHARDRKVGFVFQHYALFRHM----------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------ 128 (353)
T ss_pred ----CCHHHCCEEEEecCcccCCCC----------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------
Confidence 111123456666665444332 4555555544321 12234566778999999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+.++++.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 129 -----------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 129 -----------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999983 789999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+++..+|||+++ |++|++++.|++++++.+|.+.++..++..
T Consensus 198 ~ea~~~~Dri~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 239 (353)
T PRK10851 198 EEAMEVADRVVV-MSQGNIEQAGTPDQVWREPATRFVLEFMGE 239 (353)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhcCc
Confidence 578999999975 999999999999999999988887776654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=319.26 Aligned_cols=229 Identities=16% Similarity=0.179 Sum_probs=194.1
Q ss_pred CCCcEEEeeeEEEeC-CCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 68 IGSLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~-~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+++|+++||++.|. .+..+.++++ |||+|.+||.+||||+||||||-..+.|++|++...-..-+|+|.|+|+++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 357899999999995 3334678666 999999999999999999999999999999998654344579999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
...+..+...+....++++||+++.- =|| ..++...+...+..+++..+...++++.++|+.+|+.+.-
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtS-----LNP---l~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--- 148 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTS-----LNP---LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--- 148 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccc-----cCc---HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh---
Confidence 75555555555566777788777643 122 2378888899999999999999999999999999997521
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
..+++||++|||||||||+||+|| ||||.+||- |+++++|||
T Consensus 149 -----------~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 149 -----------KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred -----------hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 156999999999999999999999 999999882 999999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
..+.++||||+| |..|+++|.|+++++|..|.|+||+.++.+
T Consensus 218 L~iVr~~ADrV~V-M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 218 LGIVRKFADRVYV-MQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred HHHHHHhhhhEEE-EeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 578999999986 999999999999999999999999998875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=305.62 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=174.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+++++++|+++|+. ..+++| |||++++||+++||||||||||||+|+|+|+|+ |++|+|.++|++++
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~---Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it-- 69 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVND---VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDIT-- 69 (250)
T ss_pred ceeeeccceeecCC---EEEEec---eeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccC--
Confidence 67999999999986 678666 999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhcc-CCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..+.+.+.+..+...||..+.|.++ |.+|+......-.. +...+...+ .....+..+++.++|+.+||.+
T Consensus 70 -~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~------ 141 (250)
T COG0411 70 -GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LSGLLGRPRARKEEREARERARELLEFVGLGE------ 141 (250)
T ss_pred -CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hhhhhccccchhhHHHHHHHHHHHHHHcCCch------
Confidence 3344556677778889988888887 88887664331101 111111001 1135677889999999999998
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.++.+..+||+|||+|+.||||| |||.+|+.+ |.||++|.|
T Consensus 142 -----------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 142 -----------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred -----------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 56899999999999999999999 999999752 699999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 313 (347)
+.+..+||||+| |+.|+++++|+|+++.++|..
T Consensus 211 ~~Vm~l~dri~V-l~~G~~IAeG~P~eV~~dp~V 243 (250)
T COG0411 211 KLVMGLADRIVV-LNYGEVIAEGTPEEVRNNPRV 243 (250)
T ss_pred HHHhhhccEEEe-ccCCcCcccCCHHHHhcCHHh
Confidence 689999999975 999999999999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=319.29 Aligned_cols=227 Identities=13% Similarity=0.206 Sum_probs=167.9
Q ss_pred CcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++||+++|+.+ ....+ |++|||+|++||+++|+|+||||||||+++|+|+++.. ..|++|+|.|+|+++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 579999999999532 12456 55599999999999999999999999999999998611 11589999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhc---cC--CChHHHHHHHHHHHHHCCCCcc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVI---RR--SDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~---~~--~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
....+...+.++.++|++|+.... +.+ .++.+++....... .. ....+.++++.++|+.+||.+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~---------l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~ 148 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSC---------LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH 148 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchh---------cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh
Confidence 211111122234567777775421 011 12333333221100 00 1123445678899999999752
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
. .+++++|++|||||+||++||||| ||||++||. |.|+|+
T Consensus 149 ~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~ 214 (330)
T PRK15093 149 K--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL 214 (330)
T ss_pred H--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1 145899999999999999999999 999999873 799999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
||| ..+..+|||+++ |++|+|++.|++++++.+|.|+|++.++....
T Consensus 215 itHdl~~v~~~~dri~v-m~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 215 ISHDLQMLSQWADKINV-LYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred EECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 999 577889999975 99999999999999999999999988877653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.57 Aligned_cols=209 Identities=13% Similarity=0.158 Sum_probs=170.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 17 ~~~l~l~~v~~~~~~---~~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSH 85 (377)
T ss_pred CceEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 467999999999964 234 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 86 ------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~------- 141 (377)
T PRK11607 86 ------VPPYQRPINMMFQSYALFPHM----------TVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQE------- 141 (377)
T ss_pred ------CCHHHCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111234566666665554433 4445555544321 2345566778999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+.+++|.+||||||||++||||| ||||++||. |.|+|++|| +
T Consensus 142 ----------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 142 ----------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999983 899999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
++..+|||+++ |++|+++..|++++++.+|...++..++...
T Consensus 212 ea~~laDri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~~ 253 (377)
T PRK11607 212 EAMTMAGRIAI-MNRGKFVQIGEPEEIYEHPTTRYSAEFIGSV 253 (377)
T ss_pred HHHHhCCEEEE-EeCCEEEEEcCHHHHHhCCccHHHHHhcCcc
Confidence 78899999975 9999999999999999999877776666543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=319.46 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=166.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC--cEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~--G~I~~~g~~i~~ 148 (347)
.|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTV---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECC---eEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCC
Confidence 4899999999974 234 666999999999999999999999999999999999 999 999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 ------~~~~~r~ig~vfQ~~~l~p~~----------tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 129 (362)
T TIGR03258 74 ------APPHKRGLALLFQNYALFPHL----------KVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------- 129 (362)
T ss_pred ------CCHHHCCEEEEECCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc-------
Confidence 111123456666655444332 4555555554322 2345566778999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------------CCeEEEEec--
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH-- 279 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tiIiiTH-- 279 (347)
++++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 130 ----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 130 ----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 56999999999999999999999 999999873 579999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+++..+||||++ |++|+++..|++++++..|...++..++..
T Consensus 200 ~ea~~l~dri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 241 (362)
T TIGR03258 200 DDALTLADKAGI-MKDGRLAAHGEPQALYDAPADGFAAEFLGA 241 (362)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCcCcHHHHHhhCc
Confidence 578899999975 999999999999999999877766666653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=301.72 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=154.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 1 IELRGLTKSFGG---RTV---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSE 69 (235)
T ss_pred CeEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccCh
Confidence 578999999964 234 666999999999999999999999999999999999 999999999988752110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
......++.++|++|+...+..+ ++.+|+.++.............+++.++++.+++.+
T Consensus 70 -~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 128 (235)
T cd03261 70 -AELYRLRRRMGMLFQSGALFDSL----------TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG---------- 128 (235)
T ss_pred -hhHHHHhcceEEEccCcccCCCC----------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch----------
Confidence 00011133456666665443332 344444433221111233455667888999999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 129 -------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 129 -------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred -------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
.+||++++ |++|++++.|++++++.. .+++
T Consensus 202 ~~~d~v~~-l~~G~i~~~g~~~~~~~~-~~~~ 231 (235)
T cd03261 202 AIADRIAV-LYDGKIVAEGTPEELRAS-DDPL 231 (235)
T ss_pred HhcCEEEE-EECCeEEEecCHHHHcCC-CChh
Confidence 89999975 999999999999888653 3344
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=319.40 Aligned_cols=206 Identities=12% Similarity=0.174 Sum_probs=165.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~- 69 (369)
T PRK11000 2 ASVTLRNVTKAYGD---VVI---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND- 69 (369)
T ss_pred CEEEEEEEEEEeCC---eEE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 46999999999974 234 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++.... .....+..+++.++++.++|.+
T Consensus 70 -----~~~~~~~i~~v~Q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~-------- 125 (369)
T PRK11000 70 -----VPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAH-------- 125 (369)
T ss_pred -----CCHhHCCEEEEeCCcccCCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111123467777766554433 3344444433211 2234556678899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
++++++.+||||||||++||||| ||||++||. |.|+|+||| ++
T Consensus 126 ---------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999883 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||++++ |++|+++..|++++++..|....+..++.
T Consensus 197 ~~~~~d~i~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 197 AMTLADKIVV-LDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 8899999975 99999999999999999888777666555
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=317.07 Aligned_cols=213 Identities=15% Similarity=0.184 Sum_probs=163.3
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+++|+.+. ...+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 589999999997211 1345 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. ......++.++|++|+...+... ++.+|+.++.... ........+++.++++.+||.+
T Consensus 73 ~~-~~~~~~~~~ig~v~q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (343)
T PRK11153 73 SE-KELRKARRQIGMIFQHFNLLSSR----------TVFDNVALPLELA-GTPKAEIKARVTELLELVGLSD-------- 132 (343)
T ss_pred CH-HHHHHHhcCEEEEeCCCccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 10 11111134567777765444322 3344444332211 2234455677889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 133 ---------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999883 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||++++ |++|++++.|++++++..+.++.++.++.
T Consensus 204 i~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 204 VKRICDRVAV-IDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 7889999975 99999999999999988877666555544
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=313.33 Aligned_cols=219 Identities=15% Similarity=0.207 Sum_probs=180.3
Q ss_pred CCcEEEeeeEEEeCCCc--------eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 69 GSLTDAKNKILSYTPGA--------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~--------~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
.++++.+++.+.|+-+. .+.++++ |||++++|+.++|||+||||||||-.+|.+|++ + +|+|.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s-~G~I~ 344 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----S-QGEIR 344 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----c-CceEE
Confidence 46799999999995321 2467666 999999999999999999999999999999997 4 59999
Q ss_pred ECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhcc-CCChHHHHHHHHHHHHHCC
Q 019048 141 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIG 218 (347)
Q Consensus 141 ~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~g 218 (347)
|+|+++...+.. .....|+.+..+|||+.+- +.+. +|.+-|..|+..+. ..+..+..+++.++|+.+|
T Consensus 345 F~G~~i~~~~~~-~mrplR~~mQvVFQDPygS---------LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG 414 (534)
T COG4172 345 FDGQDIDGLSRK-EMRPLRRRMQVVFQDPYGS---------LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG 414 (534)
T ss_pred ECCccccccChh-hhhhhhhhceEEEeCCCCC---------CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC
Confidence 999998632221 1112244556666666542 2233 67677778887776 5567888899999999999
Q ss_pred CCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CC
Q 019048 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 272 (347)
Q Consensus 219 l~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 272 (347)
|++.. +++||+++|||||||++||||+ |||||+||. |.
T Consensus 415 LDp~~----------------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L 478 (534)
T COG4172 415 LDPAT----------------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478 (534)
T ss_pred CChhH----------------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC
Confidence 99853 5999999999999999999998 999999873 89
Q ss_pred eEEEEech--HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 273 PVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 273 tiIiiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
+.++|||| .+..+||+++| |++|+|||+|+.+++|.+|.++||+.++.+.
T Consensus 479 sYLFISHDL~VvrAl~~~viV-m~~GkiVE~G~~~~if~~P~~~YT~~L~~aa 530 (534)
T COG4172 479 SYLFISHDLAVVRALCHRVIV-MRDGKIVEQGPTEAVFANPQHEYTRALLAAA 530 (534)
T ss_pred eEEEEeccHHHHHHhhceEEE-EeCCEEeeeCCHHHHhcCCCcHHHHHHHHhh
Confidence 99999994 67889999975 9999999999999999999999999998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=337.36 Aligned_cols=224 Identities=12% Similarity=0.132 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk 121 (347)
.....|+.++++.++...+. ....|+++||+|.|+++..+ |+|+||+|++||++|||||||||||||++
T Consensus 299 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 299 SAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred HHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34556788888765542221 11349999999999854334 77799999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC
Q 019048 122 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 201 (347)
Q Consensus 122 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~ 201 (347)
+|+|+++ |++|+|.+||+|+. .+.....+...++|+|++.++..++.+|+.++...
T Consensus 374 LL~r~~~-----~~~G~I~idg~dI~---------------~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~---- 429 (567)
T COG1132 374 LLLRLYD-----PTSGEILIDGIDIR---------------DISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD---- 429 (567)
T ss_pred HHhccCC-----CCCCeEEECCEehh---------------hcCHHHHHHhccEEcccceeecccHHHHHhcCCCC----
Confidence 9999999 99999999999997 34455555566667777777777788888765431
Q ss_pred ChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC--
Q 019048 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 270 (347)
Q Consensus 202 ~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 270 (347)
..++++.++++..++.+.+...|+++.++|++.+ ..||||||||++||||+ |||||+||.
T Consensus 430 ---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G------~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~t 500 (567)
T COG1132 430 ---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERG------VNLSGGQRQRLAIARALLRNPPILILDEATSALDTET 500 (567)
T ss_pred ---CCHHHHHHHHHHhChHHHHHhCcccccceecCCC------ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHh
Confidence 2236778888888998888888999999999764 48999999999999999 999999983
Q ss_pred -------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 -------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+|+| -...+.||+|+| |++|++++.|+|++++..
T Consensus 501 E~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiV-l~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 501 EALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIV-LDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEE-EECCEEEEecCHHHHHHc
Confidence 679999999 345555999975 999999999999999887
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=341.82 Aligned_cols=226 Identities=13% Similarity=0.131 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
..+....|+.++++.+++.... ....|+++||+|+|+... ..+ |+|+||+|++||.+||+|+||||||||
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTL 495 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDG-PLI---LDDVSLQIEPGEFVAIVGPSGSGKSTL 495 (686)
T ss_pred HHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCC-ccc---eeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 3344566788877654332111 113599999999996432 234 666999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+|+|+|+++ |++|+|.+||+++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 496 lklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--- 552 (686)
T TIGR03797 496 LRLLLGFET-----PESGSVFYDGQDLA---------------GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--- 552 (686)
T ss_pred HHHHhCCCC-----CCCCEEEECCEEcC---------------cCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---
Confidence 999999999 99999999999986 2334444555555666666666677777765421
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
...+++.++++.+++++.+..+|+++.+.|++. ...||||||||++||||| |||||+||.
T Consensus 553 -----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~------G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 553 -----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG------GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred -----CCHHHHHHHHHHcCcHHHHHhccccccccccCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 124567888999999988888899999988876 347999999999999999 999999984
Q ss_pred -------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 -------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ....+.||+|++ |++|++++.|++++++..
T Consensus 622 ~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iiv-l~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 622 RTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYV-LDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 799999999 456677999975 999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=319.27 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=156.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..........+.++.++|++|+...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 666999999999999999999999999999999999 999999999999862111111111244566776665544
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
..+ ++.+|+.++.... ...+.+..+++.++++.+||+. +++++|.+||||||
T Consensus 84 ~~~----------TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~-----------------~~~~~p~~LSGGq~ 135 (363)
T TIGR01186 84 PHM----------TILQNTSLGPELL-GWPEQERKEKALELLKLVGLEE-----------------YEHRYPDELSGGMQ 135 (363)
T ss_pred CCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCch-----------------hhhCChhhCCHHHH
Confidence 432 4444444443321 2344566778999999999987 56999999999999
Q ss_pred HHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 253 YNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 253 QRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
||++||||| ||||++||+ ++|||+||| +++.++||||++ |++|++++.|++
T Consensus 136 QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v-l~~G~iv~~g~~ 214 (363)
T TIGR01186 136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI-MKAGEIVQVGTP 214 (363)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EeCCEEEeeCCH
Confidence 999999999 999999884 799999999 578899999975 999999999999
Q ss_pred ccccCCCCCCChHHHHHH
Q 019048 305 KQIFDIPESSDPENELII 322 (347)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~ 322 (347)
++++.+|.++++..++..
T Consensus 215 ~ei~~~p~~~~~~~~~~~ 232 (363)
T TIGR01186 215 DEILRNPANEYVEEFIGK 232 (363)
T ss_pred HHHHhCcccHHHHHHhhc
Confidence 999999888777666543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=298.09 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=159.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ---TV---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTA 70 (250)
T ss_pred CcEEEeceEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcccc
Confidence 479999999999742 34 666999999999999999999999999999999999 9999999999987421
Q ss_pred cccc----ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQ----EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~----~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
.... .....++.++|++|+...+... ++.+|+.++.............+++.++++.+|+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 136 (250)
T PRK11264 71 RSLSQQKGLIRQLRQHVGFVFQNFNLFPHR----------TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG---- 136 (250)
T ss_pred ccccchhhHHHHhhhhEEEEecCcccCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc----
Confidence 0000 0011233456777665444322 333443332111111223445567888999999986
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 -------------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 137 -------------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred -------------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+.+..+||++++ |++|++++.|++++++..+.++++..+
T Consensus 204 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 243 (250)
T PRK11264 204 MSFARDVADRAIF-MDQGRIVEQGPAKALFADPQQPRTRQF 243 (250)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 577789999975 999999999999999887776665544
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=305.09 Aligned_cols=205 Identities=18% Similarity=0.204 Sum_probs=156.5
Q ss_pred cEEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
||+++|+++.|+.+.. ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5899999999964321 124 666999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..........++.++|++|+... .++..++.+|+.++.... ..+..+..+++.++++.++|.+.
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~------ 136 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPES---------QLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADE------ 136 (288)
T ss_pred ccccccHHHHHhhEEEEecCcch---------hcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011112344555554310 222335667766654322 23345666788899999999632
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
+.++.+.+||||||||++||||| ||||++||. |.|||++|| ++
T Consensus 137 ----------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 137 ----------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred ----------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 35889999999999999999999 999999874 799999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+||||++ |++|++++.|++++++..
T Consensus 207 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 207 VADYADYVYL-LEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHcC
Confidence 7889999975 999999999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=336.42 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhhhhhhh---c---c--CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 48 RRRDAVFREVLQSYDQLR---T---R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~---~---~--~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
+....|+.++++.+++.. . . ...-|+++||+|.|.++..+ |+|+||+|++|+++||+||||||||||
T Consensus 318 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~v-----L~~i~l~i~~G~~vaIvG~SGsGKSTL 392 (588)
T PRK11174 318 VGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTL-----AGPLNFTLPAGQRIALVGPSGAGKTSL 392 (588)
T ss_pred HHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCee-----eeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 345567888775543211 0 0 11249999999877544334 677999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+++|+|+++ ++|+|.+||.++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 393 ~~lL~g~~p------~~G~I~i~g~~i~---------------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--- 448 (588)
T PRK11174 393 LNALLGFLP------YQGSLKINGIELR---------------ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--- 448 (588)
T ss_pred HHHHhcCCC------CCcEEEECCEecc---------------cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC---
Confidence 999999984 6899999999986 2344445555666677777777777788776521
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
...++++.++++.+++++.+..+|+++.+.|.+.+ ..||||||||++||||| |||||+||.
T Consensus 449 ----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G------~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 449 ----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA------AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred ----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 12246778889999999888888999999988874 37999999999999999 999999984
Q ss_pred ---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 519 ~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iiv-l~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 519 HSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV-MQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEE-EeCCeEeecCCHHHHHhc
Confidence 799999999 456677999975 999999999999999765
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=302.97 Aligned_cols=196 Identities=15% Similarity=0.236 Sum_probs=151.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+.+. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT--KA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAE 72 (274)
T ss_pred ceEEEEEEEEEeCCCC--ee---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 3799999999996333 24 677999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.... .++.++|++|+... .++..++.+|+.++.... ........+++.++++.++|.+
T Consensus 73 ---~~~~-~~~~i~~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-------- 130 (274)
T PRK13647 73 ---NEKW-VRSKVGLVFQDPDD---------QVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD-------- 130 (274)
T ss_pred ---CHHH-HHhhEEEEecChhh---------hhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 0001 12245666665321 112224556655443211 2233455667889999999986
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 131 ---------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999974 799999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccc
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
.++|||+++ |++|++++.|+++++
T Consensus 202 ~~~~d~i~~-l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 202 AEWADQVIV-LKEGRVLAEGDKSLL 225 (274)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHh
Confidence 789999975 999999999998643
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=342.52 Aligned_cols=226 Identities=8% Similarity=0.074 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHhhhhhhh--c-------c-C----CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCC
Q 019048 47 QRRRDAVFREVLQSYDQLR--T-------R-I----GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~--~-------~-~----~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpn 112 (347)
.+....|+.++++.+++.. . . . ...|+++||+|+|+... ..+ |+|+||+|++||.+||+|||
T Consensus 439 ~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~v---L~~isl~i~~Ge~vaIvG~s 514 (710)
T TIGR03796 439 LEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPL---IENFSLTLQPGQRVALVGGS 514 (710)
T ss_pred HHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCC-CCc---ccceeEEEcCCCEEEEECCC
Confidence 3455667888775543211 0 0 0 13599999999997532 234 66699999999999999999
Q ss_pred CChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 019048 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 192 (347)
Q Consensus 113 GsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~ 192 (347)
|||||||+|+|+|+++ |++|+|.+||.++. .+...+.+...++|+|++.++..++.+|+.
T Consensus 515 GsGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~ 574 (710)
T TIGR03796 515 GSGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE---------------EIPREVLANSVAMVDQDIFLFEGTVRDNLT 574 (710)
T ss_pred CCCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---------------HCCHHHHHhheeEEecCChhhhccHHHHhh
Confidence 9999999999999999 99999999999986 234445555666677777777778888887
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 019048 193 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 263 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DE 263 (347)
++.. ....+++.++++.+++++.+..+|+++.+.|.+. ...||||||||++||||| ||
T Consensus 575 l~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~------G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 575 LWDP-------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEG------GANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred CCCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC------CCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 5321 1224567788999999888878888999888776 348999999999999999 99
Q ss_pred hccCCCC-------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 264 PYLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 264 Pts~Ld~-------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|||+||. ++|+|+||| -.....||||++ |++|++++.|++++++..
T Consensus 642 ptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iiv-l~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIV-LERGKVVQRGTHEELWAV 701 (710)
T ss_pred ccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE-EeCCEEEEecCHHHHHHc
Confidence 9999984 899999999 456677999975 999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=309.15 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCcEEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.++|+++|+++.|+... ...+ |+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|+++|.++
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~ 90 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYI 90 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEc
Confidence 46899999999996421 1234 666999999999999999999999999999999999 9999999999887
Q ss_pred CCCccc------------cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHH
Q 019048 147 DGTYFL------------QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKA 214 (347)
Q Consensus 147 ~~~~~~------------~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l 214 (347)
...... ......++.++|++|+... .++..++.+|+.++.... ..+.....+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l 160 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY---------QLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYL 160 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchh---------ccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHH
Confidence 421000 0000112234444444310 233346677776654322 233455667788999
Q ss_pred HHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------
Q 019048 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 270 (347)
Q Consensus 215 ~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------------- 270 (347)
+.++|+.. +.++.+.+||||||||++||||| ||||++||.
T Consensus 161 ~~~gL~~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 161 NKMGLDDS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HHcCCChh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 99999631 45889999999999999999999 999999874
Q ss_pred -CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 271 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 271 -g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
|.|||+||| +.+.++|||+++ |++|++++.|++++++..+
T Consensus 225 ~g~TiiivtHd~~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 225 NNKTVFVITHTMEHVLEVADEVIV-MDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 789999999 467789999975 9999999999999887654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=304.88 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=156.0
Q ss_pred cEEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|+++||++.|+.... ..+ |++|||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 3899999999964211 234 666999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
... .....++.++|++|+... .++..++.+|+.++.... .....+..+++.++++.+||....
T Consensus 74 ~~~--~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~----- 136 (287)
T PRK13637 74 KKV--KLSDIRKKVGLVFQYPEY---------QLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED----- 136 (287)
T ss_pred cCc--cHHHHhhceEEEecCchh---------ccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh-----
Confidence 100 000112345666665421 112235556665543322 234556667889999999997210
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 137 ----------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 137 ----------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred ----------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++..+|||+++ |++|++++.|++++++..
T Consensus 207 ~~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 207 DVAKLADRIIV-MNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 77789999975 999999999999988764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=342.08 Aligned_cols=227 Identities=12% Similarity=0.127 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
..+....|+.++++.+++.... ....|+++||+|+|+.+.. + |+|+||+|++|+.+||+||||||||
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~--i---L~~isl~i~~G~~vaIvG~SGsGKS 514 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--I---LSDISLTIKMNSKTTIVGMSGSGKS 514 (708)
T ss_pred HHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCc--c---eeceeEEECCCCEEEEECCCCCCHH
Confidence 3445666888877554332111 1235999999999974433 4 6669999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|+|+++ |++|+|++||.++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 515 TLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~- 573 (708)
T TIGR01193 515 TLAKLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK- 573 (708)
T ss_pred HHHHHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHHhccCC-
Confidence 99999999999 99999999999986 3444555666677777777888888888876521
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
.....+++.++++.+++++.+..+|+++.+.|.+. ...||||||||++||||| ||||++|
T Consensus 574 -----~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~------G~~LSgGQrQRialARall~~p~iliLDE~Ts~L 642 (708)
T TIGR01193 574 -----ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE------GSSISGGQKQRIALARALLTDSKVLILDESTSNL 642 (708)
T ss_pred -----CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCC------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 01124567788999999888878888988888776 457999999999999999 9999999
Q ss_pred CC--------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 269 RD--------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 269 d~--------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|. ++|+|+||| ....+.||+|++ |++|++++.|++++++..
T Consensus 643 D~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~-l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 643 DTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIV-LDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEE-EECCEEEEECCHHHHHhc
Confidence 83 799999999 466678999975 999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=293.00 Aligned_cols=203 Identities=15% Similarity=0.251 Sum_probs=156.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||++.|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 69 (239)
T cd03296 2 SIEVRNVSKRFGD-F--VA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATDV- 69 (239)
T ss_pred EEEEEeEEEEECC-E--Ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcC-
Confidence 4899999999974 2 34 666999999999999999999999999999999999 9999999999987411
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC---CChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
...++.++|++|+...+... ++.+|+.++...... .......+++.++++.+++.+
T Consensus 70 -----~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 128 (239)
T cd03296 70 -----PVQERNVGFVFQHYALFRHM----------TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW------ 128 (239)
T ss_pred -----CccccceEEEecCCcccCCC----------CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh------
Confidence 11133466777765443322 333444332211110 122334566788999999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 129 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 129 -----------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred -----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
+.+..+||++++ |++|++++.|++++++..+.++.+..
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (239)
T cd03296 198 EEALEVADRVVV-MNKGRIEQVGTPDEVYDHPASPFVYS 235 (239)
T ss_pred HHHHHhCCEEEE-EECCeEEEecCHHHHhcCCCcHHHHH
Confidence 567889999975 99999999999999887666555443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=296.26 Aligned_cols=211 Identities=21% Similarity=0.270 Sum_probs=159.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-----CcEEEECCEe
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-----~G~I~~~g~~ 145 (347)
+|+++||+++|+.. .+ ++++||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEK---EA---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCe---ee---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 48899999999742 34 666999999999999999999999999999999999 88 9999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 146 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
+... .......++.++|++|+...+...+.+| +.++.............+++.++++.+|+...+
T Consensus 70 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~e~-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (247)
T TIGR00972 70 IYDK--KIDVVELRRRVGMVFQKPNPFPMSIYDN-----------IAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-- 134 (247)
T ss_pred cccc--ccchHHHHhheEEEecCcccCCCCHHHH-----------HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--
Confidence 7521 0011112345677777654433224444 333221111112344556788899999997311
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-- 279 (347)
...+++++.+||||||||++||||| ||||++||. ++|+|++||
T Consensus 135 -----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 135 -----------KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred -----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 0145889999999999999999999 999999984 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+.+..+||++++ |++|++++.|++++++..+.++.++.+
T Consensus 204 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 242 (247)
T TIGR00972 204 QQAARISDRTAF-FYDGELVEYGPTEQIFTNPKEKRTEDY 242 (247)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHH
Confidence 567889999975 999999999999999887777655444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=314.94 Aligned_cols=216 Identities=13% Similarity=0.173 Sum_probs=165.0
Q ss_pred CcEEEeeeEEEeCCCce---------------------eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNKILSYTPGAW---------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~---------------------~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++||++.|+.... ..+ |+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLG---VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEE---EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 35888888888865321 124 666999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHH
Q 019048 129 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 208 (347)
Q Consensus 129 ~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~ 208 (347)
|++|+|+++|+++......+.....++.++|++|+...+..+ ++.+|+.++.... ........+
T Consensus 80 -----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~----------Tv~enl~~~~~~~-~~~~~~~~~ 143 (400)
T PRK10070 80 -----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM----------TVLDNTAFGMELA-GINAEERRE 143 (400)
T ss_pred -----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC----------CHHHHHHHHHHhc-CCCHHHHHH
Confidence 999999999998752111100111233567777765544332 3344444433211 223345567
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 270 (347)
++.++++.+||.+ +.++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~e~L~~~gL~~-----------------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 144 KALDALRQVGLEN-----------------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHHHHHHcCCCh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 7889999999987 45899999999999999999999 999999873
Q ss_pred --------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 271 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 271 --------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
++|||++|| +.+.++||++++ |++|+++..|++++++..|.+++.+.++..
T Consensus 207 L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v-L~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAI-MQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHhCCEEEE-EECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 789999999 578899999975 999999999999999988877776666643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=294.84 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=157.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 70 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EI---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKTI 70 (241)
T ss_pred ceEEEEeEEEEeCCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 358999999999642 34 677999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ....++.++|++|+. .++..++.+|+.++.... . ...+++.++++.++++..
T Consensus 71 ---~-~~~~~~~i~~~~q~~-----------~~~~~tv~e~l~~~~~~~-~----~~~~~~~~~l~~~~l~~~------- 123 (241)
T PRK14250 71 ---D-VIDLRRKIGMVFQQP-----------HLFEGTVKDNIEYGPMLK-G----EKNVDVEYYLSIVGLNKE------- 123 (241)
T ss_pred ---C-hHHhhhcEEEEecCc-----------hhchhhHHHHHhcchhhc-C----cHHHHHHHHHHHcCCCHH-------
Confidence 0 001122345555543 333345666665433211 1 123467788999999632
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 124 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 124 ---------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 35789999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 195 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 195 AKRIGDYTAF-LNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 7889999975 9999999999999998877766655544
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=306.64 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=157.5
Q ss_pred cEEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+|+++||++.|+.+.. ..+ |+++||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 3899999999964321 134 666999999999999999999999999999999999 999999999876531
Q ss_pred Ccc-------ccccccCCCc--cceeeccccccccchhhhh--HhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC
Q 019048 149 TYF-------LQEYTIPRGS--NSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 217 (347)
Q Consensus 149 ~~~-------~~~~~~~r~~--~~~~~~~~~~~~~~v~qn~--~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~ 217 (347)
... .....+.... -.......+...++++|++ .++..++.+|+.++.... ..+..+..+++.++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHc
Confidence 000 0000000000 0000111122234444443 233346777777665422 334556677899999999
Q ss_pred CCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CC
Q 019048 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 272 (347)
Q Consensus 218 gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ 272 (347)
||... +.++++.+||||||||++||||| ||||++||. |+
T Consensus 153 gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 153 GLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred CCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 99732 45899999999999999999999 999999884 89
Q ss_pred eEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 273 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 273 tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
|||+||| +.+..+|||+++ |++|++++.|++++++..+
T Consensus 217 tiiivtHd~~~~~~~adrv~v-l~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTIF-FKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 9999999 578899999975 9999999999999988763
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=294.99 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=159.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+. . .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~-~--~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 69 (240)
T PRK09493 1 MIEFKNVSKHFGP-T--QV---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDPK 69 (240)
T ss_pred CEEEEeEEEEECC-e--EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCC
Confidence 4889999999974 2 34 666999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
......++.++|++|+...+... +.+|+ .++.............+++.++++.+|+++
T Consensus 70 --~~~~~~~~~i~~~~q~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 128 (240)
T PRK09493 70 --VDERLIRQEAGMVFQQFYLFPHLTALENV-----------MFGPLRVRGASKEEAEKQARELLAKVGLAE-------- 128 (240)
T ss_pred --hhHHHHhhceEEEecccccCCCCcHHHHH-----------HhHHHHhcCCCHHHHHHHHHHHHHHcCChH--------
Confidence 00011133467777765444322 44444 332111111223445567889999999986
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +.+
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 129 ---------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred ---------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
..+||++++ |++|++++.|++++++..+.++.+..++
T Consensus 200 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 236 (240)
T PRK09493 200 EKVASRLIF-IDKGRIAEDGDPQVLIKNPPSQRLQEFL 236 (240)
T ss_pred HHhCCEEEE-EECCEEEeeCCHHHHhcCCchHHHHHHh
Confidence 789999975 9999999999999888776665554443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=296.45 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=162.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|+++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYTD-F--KA---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeCC-c--ee---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 468999999999974 2 34 66699999999999999999999999999999999811001258999999988641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. . .....++.++|++|+...+...+.+| +.++.............+++.++++.+++.+.+
T Consensus 79 ~~-~-~~~~~~~~i~~v~q~~~~~~~tv~en-----------i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 140 (254)
T PRK14273 79 NN-F-DILELRRKIGMVFQTPNPFLMSIYDN-----------ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV----- 140 (254)
T ss_pred cc-c-cHHHHhhceEEEeeccccccCcHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----
Confidence 10 0 11112345677777654432224444 433321111112334556788889999884311
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
...+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 141 --------~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~ 212 (254)
T PRK14273 141 --------KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA 212 (254)
T ss_pred --------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0135888999999999999999999 999999884 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 213 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 250 (254)
T PRK14273 213 GRISDRTAF-FLNGCIEEESSTDELFFNPKNTKTEEYIS 250 (254)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHhhc
Confidence 889999975 99999999999999999998888766543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=304.36 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=157.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|++ ..+ |+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 6 ~~i~i~~l~k~~~~---~~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~~ 74 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPSR 74 (306)
T ss_pred ceEEEEeEEEEECC---eEE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEecccc
Confidence 57999999999974 345 555999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
....++.++|++|+...+..+ +.+|+.++... ...+..+..+++.++++.++|.+
T Consensus 75 -----~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~------------~~~~~~~~~~~~~~~l~~~~l~~------- 130 (306)
T PRK13537 75 -----ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY------------FGLSAAAARALVPPLLEFAKLEN------- 130 (306)
T ss_pred -----hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHcCCch-------
Confidence 011244678888876655443 55555432211 12233455667889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| ++
T Consensus 131 ----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 131 ----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45888999999999999999999 999999884 899999999 67
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.++|||+++ |++|++++.|+++++...
T Consensus 201 ~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 201 AERLCDRLCV-IEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 8899999975 999999999999988654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=338.26 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
..+....|+.++++.+++.... ....|+++||+|+|+... ..+ |+|+||+|++|+.+||+|+||||||
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~~v---L~~i~l~i~~G~~iaIvG~sGsGKS 505 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQE-TPA---LDNVSLTIRPGEKVAIIGRIGSGKS 505 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCC-ccc---eeeeeEEECCCCEEEEECCCCCCHH
Confidence 3345666888887655432110 113499999999996432 124 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+|+|+|+++ |++|+|.+||.++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 506 TLlklL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~- 564 (694)
T TIGR03375 506 TLLKLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP- 564 (694)
T ss_pred HHHHHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-
Confidence 99999999999 99999999999986 3445555666677778888888888888875432
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
....+++.++++.+++.+.+..+|+++.+.|++.+ ..||||||||++||||| |||||+|
T Consensus 565 ------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G------~~LSgGQrQRlalARall~~p~iliLDE~Ts~L 632 (694)
T TIGR03375 565 ------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG------RSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632 (694)
T ss_pred ------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 12245678889999999888888999999988763 57999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|. ++|+|+||| -...+.||+|++ |++|++++.|++++++..
T Consensus 633 D~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iiv-l~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 633 DNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV-MDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-EeCCEEEeeCCHHHHHHH
Confidence 84 799999999 456678999975 999999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=293.11 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=151.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (236)
T cd03219 1 LEVRGLTKRFGG---LVA---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLP- 68 (236)
T ss_pred CeeeeeEEEECC---EEE---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCC-
Confidence 478999999974 235 566999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccC---------CChHHHHHHHHHHHHHCCCCc
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---------SDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~---------~~~~~~~~~i~~~l~~~gl~~ 221 (347)
.....+..++|++|+...+..+ +.+|+.+ +...... .......+++.++++.+|+++
T Consensus 69 --~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 135 (236)
T cd03219 69 --PHEIARLGIGRTFQIPRLFPELTVLENVMV-----------AAQARTGSGLLLARARREEREARERAEELLERVGLAD 135 (236)
T ss_pred --HHHHHhcCEEEEecccccccCCCHHHHHHH-----------HHhhccccccccccccccHHHHHHHHHHHHHHcCccc
Confidence 0111123456777765544432 4554433 2211100 012344567888999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
..++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 136 -----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 198 (236)
T cd03219 136 -----------------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLL 198 (236)
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45889999999999999999999 999999983 789999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+|| +.+..+||++++ |++|++++.|++++++..+
T Consensus 199 vsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 199 VEHDMDVVMSLADRVTV-LDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred EecCHHHHHHhCCEEEE-EeCCEEEeecCHHHhccCC
Confidence 999 577889999975 9999999999998886643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=301.95 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=156.7
Q ss_pred EEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++||+++|+... ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 89999999996421 1234 667999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+... .++..++.+|+.++.... ........+++.++++.++|...
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEH---------QLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE------- 137 (290)
T ss_pred cccchHHHHHhhEEEEeeCchh---------hhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-------
Confidence 0000001112234555554311 233346677776654322 23345566778899999999732
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 138 ---------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 35889999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+..+|||+++ |++|++++.|++++++..+
T Consensus 209 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 209 AARYADQIVV-MHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 7889999975 9999999999999887654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=299.56 Aligned_cols=201 Identities=15% Similarity=0.223 Sum_probs=154.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+......+ |+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 47999999999964221234 666999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ... .++.++|++|+... .+...++.+|+.++.... .....+..+++.++++.+||++
T Consensus 75 ~---~~~-~~~~i~~v~q~~~~---------~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (279)
T PRK13650 75 N---VWD-IRHKIGMVFQNPDN---------QFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD-------- 132 (279)
T ss_pred c---HHH-HHhhceEEEcChHH---------hcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh--------
Confidence 0 000 12234555554321 111225556665543321 2344556677899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++.+.+|||||+||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 133 ---------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45899999999999999999999 999999873 789999999 45
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+ .+|||+++ |++|++++.|++++++...
T Consensus 204 ~-~~~dri~~-l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 204 V-ALSDRVLV-MKNGQVESTSTPRELFSRG 231 (279)
T ss_pred H-HhCCEEEE-EECCEEEEECCHHHHHcCh
Confidence 5 57999975 9999999999999887664
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=292.45 Aligned_cols=202 Identities=16% Similarity=0.160 Sum_probs=152.4
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++|++++|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 488999999997531 0134 666999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .......++.++|++|+...+..+ ++.+|+.++.... ........+.+.++++.+++++
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (233)
T cd03258 73 S-GKELRKARRRIGMIFQHFNLLSSR----------TVFENVALPLEIA-GVPKAEIEERVLELLELVGLED-------- 132 (233)
T ss_pred C-HHHHHHHHhheEEEccCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 0 000000123456666665444322 3334443322111 1223444567889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++++.+|||||+||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 133 ---------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred ---------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+||++++ |++|++++.|++++++..
T Consensus 204 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 204 VKRICDRVAV-MEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHhcC
Confidence 7889999975 999999999998877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=296.46 Aligned_cols=211 Identities=14% Similarity=0.161 Sum_probs=159.6
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc-
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY- 150 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~- 150 (347)
|+++||++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGI-L--TV---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCC-e--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 579999999974 2 34 666999999999999999999999999999999999 99999999998874110
Q ss_pred ------cc--cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 151 ------FL--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 151 ------~~--~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
.. ......++.++|++|+...+... ++.+|+.++.............+++.++++.+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~- 138 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHK----------TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD- 138 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccCCCC----------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-
Confidence 00 00011133456666655433322 334444332111111223445567888999999987
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
..++.+.+|||||+||++||||| ||||++||. |.|+|+
T Consensus 139 ----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 202 (252)
T TIGR03005 139 ----------------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL 202 (252)
T ss_pred ----------------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 45889999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+|| +.+..+||++++ |++|++++.|++++++..+.++++..++.
T Consensus 203 vsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 248 (252)
T TIGR03005 203 VTHEMGFAREFADRVCF-FDKGRIVEQGKPDEIFRQPKEERTREFLS 248 (252)
T ss_pred EeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHHh
Confidence 999 567789999975 99999999999999998888777666543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=297.84 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=158.1
Q ss_pred cEEEeeeEEEeCCC------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 71 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 71 ~l~i~nl~~~y~~~------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+|+++||++.|+.. ....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 68999999999631 01345 556999999999999999999999999999999999 99999999999
Q ss_pred eCCCCccccccccCCCccceeecccc-cc-ccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTR-SL-SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~-~~-~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
++..... ......++.++|++|+.. .+ ..+ +.+|+ .++.............+++.++++.+++..
T Consensus 74 ~i~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 141 (265)
T TIGR02769 74 DLYQLDR-KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII-----------GEPLRHLTSLDESEQKARIAELLDMVGLRS 141 (265)
T ss_pred EccccCH-HHHHHHhhceEEEecChhhhcCCCCCHHHHH-----------HHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 8752110 000112335677777642 12 112 44443 222211111223344567888999999963
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 275 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiI 275 (347)
. +.++++.+||||||||++||||| ||||++||. |+|||
T Consensus 142 ~----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 205 (265)
T TIGR02769 142 E----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 (265)
T ss_pred h----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2 35889999999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 276 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 276 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
++|| +.+..+||++++ |++|++++.|++++++. +.+++++.+.
T Consensus 206 ivsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 250 (265)
T TIGR02769 206 FITHDLRLVQSFCQRVAV-MDKGQIVEECDVAQLLS-FKHPAGRNLQ 250 (265)
T ss_pred EEeCCHHHHHHHhcEEEE-EeCCEEEEECCHHHHcC-CCCHHHHHHH
Confidence 9999 577789999975 99999999999999877 4777765554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=331.75 Aligned_cols=225 Identities=12% Similarity=0.166 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhhhhhhh-c-----cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHH
Q 019048 49 RRDAVFREVLQSYDQLR-T-----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 122 (347)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~-----~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~ 122 (347)
....|+.++++.+++.. . .....|+++||+|+|+++. ..+ |+|+||+|++|+.+||+|+||||||||+++
T Consensus 313 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~-~~i---l~~i~l~i~~G~~~aIvG~sGsGKSTLl~l 388 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKE-VPA---LRNINFKIPAGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCC-Ccc---ccCceEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 34556777665433211 1 0112599999999996532 134 666999999999999999999999999999
Q ss_pred HhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCC
Q 019048 123 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202 (347)
Q Consensus 123 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~ 202 (347)
|+|+++ |++|+|.+||.++. .+...+.+...++++|++.++..++.+|+.++..
T Consensus 389 l~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------ 442 (582)
T PRK11176 389 LTRFYD-----IDEGEILLDGHDLR---------------DYTLASLRNQVALVSQNVHLFNDTIANNIAYART------ 442 (582)
T ss_pred HHhccC-----CCCceEEECCEEhh---------------hcCHHHHHhhceEEccCceeecchHHHHHhcCCC------
Confidence 999999 99999999999986 2334444555566677777777778888875421
Q ss_pred hHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---
Q 019048 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 270 (347)
Q Consensus 203 ~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 270 (347)
.....++++++++.+++++.+...|+++.+.|++. ..+||||||||++||||| ||||++||+
T Consensus 443 ~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~------g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCC------CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 11234567788999999887777888888888765 347999999999999999 999999984
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ....+.||+|++ |++|++++.|++++++..
T Consensus 517 ~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~-l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEILV-VEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE-EECCEEEEeCCHHHHHhC
Confidence 799999999 466778999965 999999999999999765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=298.65 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=155.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~---~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 5 ANLVDMRGVSFTRGN---RCI---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred cceEEEeCeEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 468999999999964 234 666999999999999999999999999999999999 999999999988752
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... ......++.++|++|+...+..+ +.+|+. ++.......+......++.++++.+++.+
T Consensus 74 ~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 135 (269)
T PRK11831 74 MSR-SRLYTVRKRMSMLFQSGALFTDMNVFDNVA-----------YPLREHTQLPAPLLHSTVMMKLEAVGLRG------ 135 (269)
T ss_pred cCh-hhHHHHhhcEEEEecccccCCCCCHHHHHH-----------HHHHHccCCCHHHHHHHHHHHHHHcCChh------
Confidence 110 00111133467777765544332 444443 32211111223344566788999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 136 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 136 -----------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+..+||++++ |++|++++.|++++++..+
T Consensus 205 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 205 PEVLSIADHAYI-VADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHhhCEEEE-EECCEEEEeCCHHHHhcCC
Confidence 578889999975 9999999999999987654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=339.17 Aligned_cols=227 Identities=12% Similarity=0.121 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHhhhhhhhcc-------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++.... ....|+++||+|+|++.....+ |+|+||+|++||++||+||||||||||+
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl 524 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVA 524 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCCCCCHHHHH
Confidence 34555777776554332111 1235999999999975322234 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
++|+|+++ |++|+|.+||+++. .+...+.+...++|+|++.++..++.+|+.++.. .
T Consensus 525 ~lL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~---~ 581 (711)
T TIGR00958 525 ALLQNLYQ-----PTGGQVLLDGVPLV---------------QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT---D 581 (711)
T ss_pred HHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHhhceEEecCccccccCHHHHHhcCCC---C
Confidence 99999999 99999999999986 2334444445556666667777777788776532 1
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
..++++.++++.+++.+.+...++++.+.+++. ..+||||||||++||||| |||||+||.
T Consensus 582 ----~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~------G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 582 ----TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK------GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred ----CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 114567788999999887777888888888765 347999999999999999 999999983
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
++|+|+||| -.....||+|++ |++|++++.|++++++++.
T Consensus 652 te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Iiv-L~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 652 CEQLLQESRSRASRTVLLIAHRLSTVERADQILV-LKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEE-EECCEEEEeeCHHHHHhCC
Confidence 799999999 455677999965 9999999999999998653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=290.10 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=145.6
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc-----cCCCCCCCCcEEEECCEeC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~-----~~~~~~p~~G~I~~~g~~i 146 (347)
|+++||+++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDK---HA---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 5799999999742 34 67799999999999999999999999999999999 8 9999999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
..... .....++.++|++|+.. ++..++.+|+.++.............+++.++++.+|+.+
T Consensus 70 ~~~~~--~~~~~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 131 (227)
T cd03260 70 YDLDV--DVLELRRRVGMVFQKPN-----------PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD----- 131 (227)
T ss_pred hhcch--HHHHHHhhEEEEecCch-----------hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-----
Confidence 41100 00111234455555543 3322455555543321111112234567888999999986
Q ss_pred cceeeeeechhhhhccC--CCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~--~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
..++. +.+||||||||++||||| ||||++||. .+|||++||
T Consensus 132 ------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 199 (227)
T cd03260 132 ------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199 (227)
T ss_pred ------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEecc
Confidence 23555 699999999999999999 999999884 479999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+.+..+||++++ |++|++++.|+++++
T Consensus 200 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 227 (227)
T cd03260 200 MQQAARVADRTAF-LLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEecCcccC
Confidence 567889999975 999999999987654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=345.57 Aligned_cols=229 Identities=16% Similarity=0.220 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhc---------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChH
Q 019048 46 DQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 116 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGK 116 (347)
..+.....+.++.+..+.... .....|+++||+|+|+.+..+.+|+| +||.|++|+.+||||||||||
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g---~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKG---VSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCC---eEEEeCCCCEEEEECCCCCCH
Confidence 344555566776655543211 12345999999999987765677555 999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhh
Q 019048 117 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 196 (347)
Q Consensus 117 STLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~ 196 (347)
||++++|.++|. |++|+|++||.|+. .+.....+...++|.|.|.++..++.+|+.+|..
T Consensus 393 ST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 393 STLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP 452 (1228)
T ss_pred HHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence 999999999999 99999999999987 4666677778888999998888899999997664
Q ss_pred hccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccC
Q 019048 197 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 267 (347)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~ 267 (347)
...++++.++++..+..+.+...|+++.+.|.+.+. +||||||||+|||||| |||||+
T Consensus 453 -------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 453 -------DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred -------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 234567888888898888888899999999988854 6999999999999999 999999
Q ss_pred CCC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 268 FRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 268 Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
||. |.|-|+|+| -...+.||+|++ |++|+|+|.|+|+|++..+
T Consensus 520 LD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v-~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAV-MEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred cCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEE-EECCEEEEecCHHHHHhcc
Confidence 984 999999999 355666999975 9999999999999999876
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=292.93 Aligned_cols=204 Identities=19% Similarity=0.274 Sum_probs=154.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+... .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 68 (242)
T cd03295 1 IEFENVTKRYGGGK--KA---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQ-- 68 (242)
T ss_pred CEEEEEEEEeCCcc--eE---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcC--
Confidence 47899999997422 23 677999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc-cccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~-~~~~~~~~~ 230 (347)
.. ...++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+ .
T Consensus 69 -~~-~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-------- 127 (242)
T cd03295 69 -DP-VELRRKIGYVIQQIGLFPHM----------TVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAE-------- 127 (242)
T ss_pred -Ch-HHhhcceEEEccCccccCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH--------
Confidence 00 01123456666654433222 3444444332211 1223445567889999999974 1
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++++.+|||||+||++||||| ||||++||. |+|||++|| +.+
T Consensus 128 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 128 --------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA 199 (242)
T ss_pred --------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 34888999999999999999999 999999873 789999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 317 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 317 (347)
..+||++++ |++|++++.|+++++...+.++.+.
T Consensus 200 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (242)
T cd03295 200 FRLADRIAI-MKNGEIVQVGTPDEILRSPANDFVA 233 (242)
T ss_pred HHhCCEEEE-EECCEEEEecCHHHHHcCCCChHHH
Confidence 899999975 9999999999998887665544433
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=299.50 Aligned_cols=204 Identities=13% Similarity=0.182 Sum_probs=155.6
Q ss_pred EEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++||+++|+.+. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 89999999996322 1134 666999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+... .++..++.+|+.++.... ........+++.++++.+||...
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPES---------QLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD------- 137 (286)
T ss_pred cccchHHHHHhheEEEecChHh---------ccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000001112344555554310 123346667776654321 23345566778899999999731
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 138 ---------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 35789999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+|||+++ |++|++++.|++++++..
T Consensus 209 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 209 VARYADEVIV-MKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 7789999975 999999999999888765
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=330.54 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhhhhhhcc-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHH
Q 019048 49 RRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L 123 (347)
....|+.++++..++.... ....|+++|++|+|+.+.. + |+|+||+|++||.+||+|+||||||||+++|
T Consensus 313 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~--i---l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 313 VAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNL--V---LQNINLSVPSRGFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred HHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCc--e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4455677766543321111 1234999999999974333 4 6669999999999999999999999999999
Q ss_pred hhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCCh
Q 019048 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 203 (347)
Q Consensus 124 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~ 203 (347)
+|+++ |++|+|.+||.++. .+.....+...++++|++.++..++.+|+.++..
T Consensus 388 ~gl~~-----p~~G~I~idg~~i~---------------~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~------- 440 (592)
T PRK10790 388 MGYYP-----LTEGEIRLDGRPLS---------------SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD------- 440 (592)
T ss_pred hcccC-----CCCceEEECCEEhh---------------hCCHHHHHhheEEEccCCccccchHHHHHHhCCC-------
Confidence 99999 99999999999986 3444455555666677777777777788775421
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 270 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 270 (347)
...+++.++++.+|+.+.+...|+++.+.|++. ...||||||||++||||| ||||++||.
T Consensus 441 -~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~------g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 441 -ISEEQVWQALETVQLAELARSLPDGLYTPLGEQ------GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred -CCHHHHHHHHHHcCcHHHHHhccccccccccCC------CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 123567889999999987777888888888775 447999999999999999 999999984
Q ss_pred -----------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 -----------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ......||+|++ |++|++++.|++++++..
T Consensus 514 ~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~-l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 514 AIQQALAAVREHTTLVVIAHRLSTIVEADTILV-LHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE-EECCEEEEEcCHHHHHhC
Confidence 799999999 456667999965 999999999999999865
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=288.85 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=142.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|++++|+.+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH-QPA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRLR 71 (216)
T ss_pred CeEEEEEEEEecCCC-eeE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhcC
Confidence 589999999996432 124 666999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. ......++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.+++.+
T Consensus 72 ~-~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 130 (216)
T TIGR00960 72 G-REIPFLRRHIGMVFQDHRLLSDR----------TVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG--------- 130 (216)
T ss_pred h-hHHHHHHHhceEEecCccccccc----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 00001123456666654433222 4445554432211 1223345567889999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. |.|||+||| +.+.
T Consensus 131 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 131 --------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEeeCCeE
Q 019048 284 SLTDRARIRTYLGEL 298 (347)
Q Consensus 284 ~~aDri~v~l~~G~i 298 (347)
.+||++++ |++|++
T Consensus 203 ~~~d~i~~-l~~G~i 216 (216)
T TIGR00960 203 TYRHRTLT-LSRGRL 216 (216)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999975 999974
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=328.41 Aligned_cols=224 Identities=12% Similarity=0.125 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhhhhhhhcc-------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++.... ..+.|+++||+|+|++++ ..+ |+|+||+|++|+++||+||||||||||+
T Consensus 308 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~~~i~~G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 308 IASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQP-QPV---LKGLSLQIKAGEKVALLGRTGCGKSTLL 383 (574)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCC-Ccc---eecceEEECCCCEEEEECCCCCCHHHHH
Confidence 44556788877654432110 123599999999996532 134 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
++|+|+++ |++|+|.++|.++. .+...+.+...++++|++.++..++.+|+.++..
T Consensus 384 ~ll~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---- 439 (574)
T PRK11160 384 QLLTRAWD-----PQQGEILLNGQPIA---------------DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP---- 439 (574)
T ss_pred HHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhheeEEcccchhhcccHHHHhhcCCC----
Confidence 99999999 99999999999986 2334444555566677777777778888875432
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
....+++.++++.+++++.+.. |+++.+.|++. ...||||||||++||||| ||||++||.
T Consensus 440 ---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~------g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 440 ---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEG------GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred ---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1234567889999999987777 99999888776 447999999999999999 999999983
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ......||+|++ |++|++++.|++++++..
T Consensus 510 t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 510 TERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV-MDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEE-EeCCeEEEeCCHHHHHhc
Confidence 799999999 445566999965 999999999999998765
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=302.43 Aligned_cols=196 Identities=13% Similarity=0.161 Sum_probs=158.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+++++||++.|+.+ ..+ |++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+...
T Consensus 3 ~~i~~~~l~k~~~~~--~~~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~- 71 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTA---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK- 71 (293)
T ss_pred ceeeecceEEEeCCC--CEE---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc-
Confidence 358899999999832 345 566999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...-.++.+||++++...+..+ +.|++.++... . ..+....++++.++++.++|.+
T Consensus 72 ----~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l-----------~-~~~~~~~~~~~~~~l~~~~L~~------- 128 (293)
T COG1131 72 ----EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL-----------Y-GLSKEEAEERIEELLELFGLED------- 128 (293)
T ss_pred ----CHHHHHhheEEEccCCCCCccccHHHHHHHHHHH-----------h-CCChhHHHHHHHHHHHHcCCch-------
Confidence 1112244567888877765555 66666654432 1 1122455678999999999997
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C-CeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tiIiiTH--~ 280 (347)
..++++..||+|||||++||+|| ||||+|||+ | +||+++|| +
T Consensus 129 ----------~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 129 ----------KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred ----------hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 23778999999999999999999 999999985 5 89999999 7
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++..+||||++ |++|+++..|+++++...
T Consensus 199 e~~~~~d~v~i-l~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 199 EAEELCDRVII-LNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHhCCEEEE-EeCCEEEEeCCHHHHHHh
Confidence 88889999975 999999999998877543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=329.95 Aligned_cols=220 Identities=15% Similarity=0.204 Sum_probs=168.5
Q ss_pred CCcEEEeeeEEEeCCC--------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 69 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
.++|+++||++.|+.. ....+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01245 566999999999999999999999999999999999 9999999
Q ss_pred ECCEeCCCCccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCC
Q 019048 141 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (347)
Q Consensus 141 ~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g 218 (347)
++|+++..... ......++.++|++|+.. .+..+ ++.+++.++.............+++.++++.+|
T Consensus 383 ~~g~~i~~~~~-~~~~~~~~~i~~v~Q~~~~~l~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~g 451 (623)
T PRK10261 383 FNGQRIDTLSP-GKLQALRRDIQFIFQDPYASLDPRQ----------TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451 (623)
T ss_pred ECCEECCcCCH-HHHHHhcCCeEEEecCchhhcCCCC----------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 99998752110 011112345677777642 22222 333444433221111123445677889999999
Q ss_pred CCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CC
Q 019048 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 272 (347)
Q Consensus 219 l~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 272 (347)
|... .+++++++||||||||++||||| ||||++||. |.
T Consensus 452 L~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 515 (623)
T PRK10261 452 LLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515 (623)
T ss_pred CCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 9632 35899999999999999999999 999999873 78
Q ss_pred eEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 273 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 273 tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
|||+||| +.+..+|||+++ |++|++++.|++++++..|.|++++.++.+..
T Consensus 516 tvi~isHdl~~v~~~~dri~v-l~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 516 AYLFISHDMAVVERISHRVAV-MYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred EEEEEeCCHHHHHHhCCEEEE-EECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 9999999 578899999975 99999999999999999999999988877654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=341.22 Aligned_cols=232 Identities=12% Similarity=0.127 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc---------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 116 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGK 116 (347)
..+....++.++++.++..... ...-|+++||+|+|+.+..+.+++| +||+|++|+.+||||||||||
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~---l~l~i~~GqTvALVG~SGsGK 1029 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNN---LSLSIRAGQTVALVGPSGSGK 1029 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcC---CcEEecCCCEEEEECCCCCCH
Confidence 3444566777877766532111 1234999999999987766777555 999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhh
Q 019048 117 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 196 (347)
Q Consensus 117 STLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~ 196 (347)
||.+.+|-++|. |++|.|.+||.|++ .+.+...|...++|.|.|.++..++.+|+.+|..
T Consensus 1030 STvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1030 STVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred HHHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence 999999999999 99999999999997 5777888888899999999999999999998822
Q ss_pred hccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccC
Q 019048 197 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 267 (347)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~ 267 (347)
+ ...+++.++++..++.+.+...|+++.+.|++++. +||||||||+|||||+ ||.||+
T Consensus 1090 ------~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~------QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1090 ------E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV------QLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred ------C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC------cCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 1 23567888899999999999999999999999854 8999999999999999 999999
Q ss_pred CCC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 268 FRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 268 Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
||. |.|.|+|+| -...+.||.|+| +++|+++|.|+|+++++ +.-.|
T Consensus 1157 LDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V-i~~G~VvE~GtH~~L~~-~~G~Y 1218 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV-LKNGKVVEQGTHDELLA-KRGIY 1218 (1228)
T ss_pred hhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE-EECCEEEecccHHHHHh-CCCch
Confidence 983 999999999 578889999976 99999999999999998 44444
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=297.77 Aligned_cols=199 Identities=15% Similarity=0.246 Sum_probs=154.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+++++|++++|+.+.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKE--A---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITKE 71 (277)
T ss_pred ceEEEEEEEEEeCCCCc--e---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 46999999999964332 4 677999999999999999999999999999999999 9999999999987510
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.....++.++|++|+.... ++..++.+|+.++.... ........+++.++++.++|.+
T Consensus 72 ----~~~~~~~~i~~v~q~~~~~---------~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (277)
T PRK13652 72 ----NIREVRKFVGLVFQNPDDQ---------IFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE-------- 129 (277)
T ss_pred ----CHHHHHhheEEEecCcccc---------cccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 0001123456666664211 11124445554332211 2234455667889999999986
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++.+.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 130 ---------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 130 ---------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.++|||+++ |++|++++.|++++++..
T Consensus 201 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 201 VPEMADYIYV-MDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHhCCEEEE-EECCeEEEECCHHHHhcC
Confidence 7789999975 999999999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=291.82 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=160.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|+|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|++...+..|++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~---~~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGD---FQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECC---eee---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 478999999999964 234 66699999999999999999999999999999986311101479999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .. .....++.++|++|+...+.. ++.+|+.++.............+++.++++.+++.+.+
T Consensus 78 ~-~~-~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 139 (253)
T PRK14242 78 P-HV-DVVELRRRVGMVFQKPNPFPK-----------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV----- 139 (253)
T ss_pred c-cc-CHHHHhhcEEEEecCCCCCcC-----------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----
Confidence 0 00 011113356777776543322 33444443322111112234456788899999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+.+++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 140 --------~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 140 --------KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred --------hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 0135788999999999999999999 999999984 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
.++||++++ |++|++++.|++++++..+.+.+++.+
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14242 212 ARVSDVTAF-FYMGKLIEVGPTEQIFTRPREKQTEDY 247 (253)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHcCCCchHHHHH
Confidence 899999975 999999999999999888777765544
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=291.91 Aligned_cols=216 Identities=20% Similarity=0.243 Sum_probs=158.2
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++..+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 2 NKIEIRDLKVSFGQV---EV---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred ceEEEEeeEEEECCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 569999999999742 34 666999999999999999999999999999999997110013699999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC-CChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. . ...++.++|++|+...+... ++.+|+.++...... ....+..+++.++++.+++...+
T Consensus 76 ~---~-~~~~~~i~~v~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 136 (250)
T PRK14247 76 D---V-IELRRRVQMVFQIPNPIPNL----------SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV----- 136 (250)
T ss_pred C---H-HHHhccEEEEeccCccCCCC----------cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----
Confidence 0 0 11133566777665433222 344444433211111 12344556788999999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
...+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 137 --------~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 208 (250)
T PRK14247 137 --------KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA 208 (250)
T ss_pred --------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0135788999999999999999999 999999984 789999999 467
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
..+||++++ |++|++++.|++++++..+.++.++.+
T Consensus 209 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14247 209 ARISDYVAF-LYKGQIVEWGPTREVFTNPRHELTEKY 244 (250)
T ss_pred HHhcCEEEE-EECCeEEEECCHHHHHcCCccHHHHHH
Confidence 789999975 999999999999999877665554433
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=287.76 Aligned_cols=190 Identities=14% Similarity=0.164 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 67 (220)
T cd03265 1 IEVENLVKKYGD---FEA---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVRE-- 67 (220)
T ss_pred CEEEEEEEEECC---EEe---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcC--
Confidence 579999999964 234 666999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. ...++.++|++|+...+..+ ++.+|+.++... .........+++.++++.+++++
T Consensus 68 --~-~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---------- 123 (220)
T cd03265 68 --P-REVRRRIGIVFQDLSVDDEL----------TGWENLYIHARL-YGVPGAERRERIDELLDFVGLLE---------- 123 (220)
T ss_pred --h-HHHhhcEEEecCCccccccC----------cHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHH----------
Confidence 0 11123456777665433322 333444332211 11223445667889999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 124 -------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 124 -------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred -------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCccc
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
.+||++++ |++|++++.+++++
T Consensus 197 ~~~d~i~~-l~~G~i~~~~~~~~ 218 (220)
T cd03265 197 QLCDRVAI-IDHGRIIAEGTPEE 218 (220)
T ss_pred HhCCEEEE-EeCCEEEEeCChHH
Confidence 89999975 99999999987754
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=303.97 Aligned_cols=221 Identities=14% Similarity=0.171 Sum_probs=162.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+|+++|++++|..+. ..+ |+|+||+|++|+++||+|+||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~~-~~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRT-KHV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 35899999999996322 234 67799999999999999999999999999999998621111579999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. . .....++.++|++|++..+.. ++.+|+.++.......+.....+.+.++++.++|.+.+
T Consensus 154 ~~-~-~~~~lr~~i~~v~q~~~~~~~-----------ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l----- 215 (329)
T PRK14257 154 KK-I-SSLELRTRIGMVFQKPTPFEM-----------SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV----- 215 (329)
T ss_pred cc-c-chHhhhccEEEEecCCccCCC-----------cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-----
Confidence 00 0 001113456677766554433 34444444322111111222334567888999885422
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++++.+||||||||++||||| ||||++||. ++|+|+||| +.+
T Consensus 216 --------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i 287 (329)
T PRK14257 216 --------KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287 (329)
T ss_pred --------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1245788999999999999999999 999999883 799999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.++||||++ |++|++++.|++++++..|.++.+..++
T Consensus 288 ~~~~Driiv-l~~G~i~e~g~~~~l~~~~~~~~~~~~~ 324 (329)
T PRK14257 288 QRISDETVF-FYQGWIEEAGETKTIFIHPKNKRTKDYI 324 (329)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence 888999975 9999999999999999999988766554
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=304.82 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=158.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||+++|++ ..+ |+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 39 ~~~i~i~nl~k~y~~---~~~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~ 107 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAV---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPA 107 (340)
T ss_pred ceeEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCc
Confidence 467999999999975 345 566999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. ....++.++|++|+...+..+ +.+|+.++... . ........+++.++++.++|.+
T Consensus 108 ~-----~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~ll~~~~L~~------ 164 (340)
T PRK13536 108 R-----ARLARARIGVVPQFDNLDLEFTVRENLLVFGRY-----------F-GMSTREIEAVIPSLLEFARLES------ 164 (340)
T ss_pred c-----hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1 111244678888876554444 56655442210 1 1223445567788999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+||||||||++||+|| ||||+|||. |+|||++|| +
T Consensus 165 -----------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 165 -----------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred -----------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45889999999999999999999 999999984 899999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++..+||++++ |++|+++..|+++++...
T Consensus 234 e~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 234 EAERLCDRLCV-LEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 88899999975 999999999999988654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=297.47 Aligned_cols=201 Identities=13% Similarity=0.222 Sum_probs=155.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|+.+. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~~ 73 (283)
T PRK13636 4 YILKVEELNYNYSDGT--HA---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDYS 73 (283)
T ss_pred ceEEEEeEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCCC
Confidence 5799999999996333 24 677999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. .....++.++|++|+... .++..++.+|+.++.... ..+.....+++.++++.+||.+
T Consensus 74 -~~-~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 133 (283)
T PRK13636 74 -RK-GLMKLRESVGMVFQDPDN---------QLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH-------- 133 (283)
T ss_pred -cc-hHHHHHhhEEEEecCcch---------hhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 00 000112345666665421 112224556665443211 2234455677889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 134 ---------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 134 ---------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 56899999999999999999999 999999873 789999999 56
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+|||+++ |++|++++.|++++++..
T Consensus 205 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 205 VPLYCDNVFV-MKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 7789999975 999999999999888764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=287.04 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=147.5
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||++.|+.+. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~-~~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 69 (220)
T cd03263 1 LQIRNLTKTYKKGT-KPA---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTD-- 69 (220)
T ss_pred CEEEeeEEEeCCCC-cee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccc--
Confidence 57899999996421 134 666999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.++|++|+...+... ++.+|+.+..... ........+++.++++.+++.+
T Consensus 70 ---~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 125 (220)
T cd03263 70 ---RKAARQSLGYCPQFDALFDEL----------TVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTD---------- 125 (220)
T ss_pred ---hHHHhhhEEEecCcCCccccC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 011123456776665433222 3334443322111 1223344567888999999976
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
.+++++.+|||||+||++||||| ||||++||. ++|||++|| +.+.++
T Consensus 126 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 126 -------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred -------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 45788999999999999999999 999999984 689999999 567789
Q ss_pred ccEEEEEeeCCeEeecCCcccc
Q 019048 286 TDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l 307 (347)
||++++ |++|++++.|+++++
T Consensus 199 ~d~i~~-l~~g~i~~~~~~~~~ 219 (220)
T cd03263 199 CDRIAI-MSDGKLRCIGSPQEL 219 (220)
T ss_pred cCEEEE-EECCEEEecCCHHHc
Confidence 999975 999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=294.58 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=158.5
Q ss_pred CCcEEEeeeEEEeCCC------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC
Q 019048 69 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~ 142 (347)
+++|+++||+++|+.. ....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 3579999999999631 01234 666999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
|.++... .....++.++|++|+...+ +.+. ++.+++.++.............+++.++++.+++.+
T Consensus 74 g~~~~~~----~~~~~~~~i~~v~q~~~~~---------~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 140 (267)
T PRK15112 74 DHPLHFG----DYSYRSQRIRMIFQDPSTS---------LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP 140 (267)
T ss_pred CEECCCC----chhhHhccEEEEecCchhh---------cCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh
Confidence 9887411 1111123456777664211 0111 233333332221111223345567889999999953
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 275 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiI 275 (347)
. ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 141 ~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 141 D----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred H----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2 34778899999999999999999 999999873 78999
Q ss_pred EEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 276 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 276 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
++|| +.+..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 205 ivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLV-MHQGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred EEeCCHHHHHHhcCEEEE-EECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence 9999 577889999975 9999999999999998877666655444
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=291.05 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=147.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 1 IEVENLSKTYPNGK--KA---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKG 70 (241)
T ss_pred CEEeeEEEecCCcc--EE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccCH
Confidence 47899999996422 24 666999999999999999999999999999999999 999999999988752100
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
......++.++|++|+...+... +.+|+.+.... .... .............+++.++++.+++.+
T Consensus 71 -~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 136 (241)
T cd03256 71 -KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG---RRST-WRSLFGLFPKEEKQRALAALERVGLLD--------- 136 (241)
T ss_pred -hHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc---cchh-hhhhcccCcHHHHHHHHHHHHHcCChh---------
Confidence 00011123456777665444322 44444321100 0000 000001112334567788999999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 137 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 137 --------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred --------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccc
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
..+||++++ |++|++++.|+++++
T Consensus 209 ~~~~d~v~~-l~~G~i~~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVG-LKDGRIVFDGPPAEL 232 (241)
T ss_pred HHhCCEEEE-EECCEEEeecCHHHh
Confidence 789999975 999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=312.71 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=156.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|++ ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~L~~~nls~~y~~---~~v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~~ 70 (402)
T PRK09536 2 PMIDVSDLSVEFGD---TTV---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEAL 70 (402)
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCcC
Confidence 57999999999975 234 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhc--c-CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~--~-~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .... ++.+++++|+...+..+ +.+++.+ +.... . .......++++.++++.+++.+
T Consensus 71 ~---~~~~-~~~ig~v~q~~~l~~~~tv~e~v~~-----------~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~---- 131 (402)
T PRK09536 71 S---ARAA-SRRVASVPQDTSLSFEFDVRQVVEM-----------GRTPHRSRFDTWTETDRAAVERAMERTGVAQ---- 131 (402)
T ss_pred C---HHHH-hcceEEEccCCCCCCCCCHHHHHHh-----------ccchhcccccCCCHHHHHHHHHHHHHcCCch----
Confidence 1 1111 34567887776544333 4444433 21100 0 1112345677899999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 132 -------------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd 198 (402)
T PRK09536 132 -------------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 (402)
T ss_pred -------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 56899999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+++.++|||+++ |++|+++..|++++++..
T Consensus 199 l~~~~~~adrii~-l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 199 LDLAARYCDELVL-LADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHhCCEEEE-EECCEEEEecCHHHHhCc
Confidence 688899999975 999999999999988754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=316.82 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=165.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||+++|+++..+ |+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||++++
T Consensus 351 ~I~F~dV~f~y~~k~~i-----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik--- 416 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKV-----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK--- 416 (591)
T ss_pred cEEEEeeEEEeCCCCce-----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh---
Confidence 49999999999876544 666999999999999999999999999999999997 7899999999997
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. +.....|..+++|+|+--++..++..|+.+|-. ....+++.+++++.++.+.+.++|+++
T Consensus 417 ---~---------~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~~GY 477 (591)
T KOG0057|consen 417 ---E---------VSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLPDGY 477 (591)
T ss_pred ---h---------hChHHhhhheeEeCCcccccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhccccc
Confidence 2 223333334444444444555667777776543 223467888999999999888999999
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
-+.|.++.. .||||||||++||||+ |||||+||. ++|+|+|.| -+...-
T Consensus 478 ~T~VGerG~------~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 478 QTLVGERGL------MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred hhhHhhccc------ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 999988865 6999999999999998 999999983 899999999 477778
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||+|++ +++|++.+.|++++++.
T Consensus 552 ~DkI~~-l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 552 FDKIIV-LDNGTVKEYGTHSELLA 574 (591)
T ss_pred CCEEEE-EECCeeEEeccHHHHhh
Confidence 999975 99999999999999988
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=293.03 Aligned_cols=218 Identities=19% Similarity=0.231 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+. . .+ |+|+||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 10 ~~~l~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE-K--QA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC-e--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 468999999999974 2 34 66699999999999999999999999999999998710000279999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+. .++.+|+.++.... ........+++.++++.+++....
T Consensus 84 ~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~----- 144 (258)
T PRK14268 84 P--DVDVVELRKNVGMVFQKPNPFP-----------MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET----- 144 (258)
T ss_pred c--cchHHHHhhhEEEEecCCccCc-----------ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch-----
Confidence 0 0000111334667776654333 23334443332111 122334455678899999885311
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
...+++++.+|||||+||++||||| ||||++||. ++|||++|| +.+
T Consensus 145 --------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~ 216 (258)
T PRK14268 145 --------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA 216 (258)
T ss_pred --------hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence 0135788999999999999999999 999999884 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
..+||++++ |++|++++.|++++++.++.+++++.++
T Consensus 217 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK14268 217 ARISDYTGF-FLMGELIEFGQTRQIFHNPREKSTEDYI 253 (258)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHh
Confidence 889999975 9999999999999999888888776554
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=295.41 Aligned_cols=207 Identities=18% Similarity=0.191 Sum_probs=156.7
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
.++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 26 ~~~~~~~~~~~---~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 26 SKEEILKKTGQ---TVG---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhhcCC---ceE---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChh
Confidence 57789999975 234 666999999999999999999999999999999999 9999999999987411100
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
......++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.++|.+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----------- 152 (269)
T cd03294 95 ELRELRRKKISMVFQSFALLPHR----------TVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEG----------- 152 (269)
T ss_pred hhhhhhcCcEEEEecCcccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh-----------
Confidence 00011123567777765444322 3334443332111 1223344567888999999987
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHh
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+..
T Consensus 153 ------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 153 ------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR 226 (269)
T ss_pred ------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 45899999999999999999999 999999873 689999999 56788
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+||++++ |++|++++.|++++++..+.+++++.+
T Consensus 227 ~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 260 (269)
T cd03294 227 LGDRIAI-MKDGRLVQVGTPEEILTNPANDYVREF 260 (269)
T ss_pred hcCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHH
Confidence 9999975 999999999999999887766655444
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=291.52 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=148.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGK--QA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCc--ce---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCC
Confidence 488999999996222 34 666999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc-------cCCChHHHHHHHHHHHHHCCCCccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~-------~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
. ......++.++|++|+...+..+ ++.+|+.++.... .........+++.++++.+++..
T Consensus 71 ~-~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 137 (243)
T TIGR02315 71 G-KKLRKLRRRIGMIFQHYNLIERL----------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-- 137 (243)
T ss_pred H-HHHHHHHhheEEEcCCCcccccc----------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--
Confidence 0 00000123456666654433222 3444444322100 01112334567888999999976
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEE
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 277 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIii 277 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 202 (243)
T TIGR02315 138 ---------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202 (243)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45889999999999999999999 999999873 6899999
Q ss_pred ec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 278 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
|| +.+..+||++++ |++|++++.|+++++
T Consensus 203 tH~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 203 LHQVDLAKKYADRIVG-LKAGEIVFDGAPSEL 233 (243)
T ss_pred eCCHHHHHHhcCeEEE-EECCEEEecCCHHHh
Confidence 99 567789999975 999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=301.05 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=154.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVV---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS- 70 (303)
T ss_pred cEEEEEeEEEEeCC---eEE---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc-
Confidence 47999999999974 245 566999999999999999999999999999999999 999999999988741
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.....++.++|++|+...+..+ +.+|+.++. ... ..+.....+++.++++.+++.+
T Consensus 71 ----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-----------~~~-~~~~~~~~~~~~~ll~~~~l~~------- 127 (303)
T TIGR01288 71 ----RARLARVAIGVVPQFDNLDPEFTVRENLLVFG-----------RYF-GMSTREIEAVIPSLLEFARLES------- 127 (303)
T ss_pred ----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 1111244567887775544333 555543321 101 1223445566788999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 128 ----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 128 ----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45889999999999999999999 999999983 889999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+||++++ |++|+++..|+++++...
T Consensus 198 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 198 AERLCDRLCV-LESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 8889999975 999999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=282.57 Aligned_cols=185 Identities=18% Similarity=0.260 Sum_probs=143.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGS---VRA---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCC---eee---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 578999999964 234 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03259 67 ---VPPERRNIGMVFQDYALFPHL----------TVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG---------- 122 (213)
T ss_pred ---CchhhccEEEEcCchhhccCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 111123456666654433222 3444444332211 1223445567888999999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 123 -------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 123 -------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred -------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5678
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
.+||++++ |++|++++.|
T Consensus 196 ~~~d~v~~-l~~G~i~~~g 213 (213)
T cd03259 196 ALADRIAV-MNEGRIVQVG 213 (213)
T ss_pred HhcCEEEE-EECCEEEecC
Confidence 99999975 9999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=315.08 Aligned_cols=222 Identities=13% Similarity=0.179 Sum_probs=181.4
Q ss_pred HHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHH
Q 019048 50 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L 123 (347)
...|+.++.+..++...+ ....++++||+|+|++.. .++ |+|+||++++||.+||+|+||||||||+++|
T Consensus 309 Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~-~~~---L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl 384 (573)
T COG4987 309 SARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQ-TKA---LKNFNLTLAQGEKVAILGRSGSGKSTLLQLL 384 (573)
T ss_pred HHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCc-cch---hhccceeecCCCeEEEECCCCCCHHHHHHHH
Confidence 445778877666553322 111699999999997544 345 5669999999999999999999999999999
Q ss_pred hhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCCh
Q 019048 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 203 (347)
Q Consensus 124 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~ 203 (347)
.|.++ |++|+|.++|.++. .+..++.+...+++.|.+.++..++.+|+.++..
T Consensus 385 ~~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~------- 437 (573)
T COG4987 385 AGAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP------- 437 (573)
T ss_pred HhccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-------
Confidence 99999 99999999999886 3455556666666788888888888888875443
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 270 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 270 (347)
....+.+.++++++||++.+...|+++.+-||+. ...||||||||++|||+| ||||.|||+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~------G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEG------GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccC------CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 2334678889999999987777777887777776 457999999999999999 999999994
Q ss_pred -----------CCeEEEEech-HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 -----------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 -----------g~tiIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
|+|+|||||. .-.+.+|||++ |++|+++++|++.+++.
T Consensus 512 ~vL~ll~~~~~~kTll~vTHrL~~le~~drIiv-l~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIV-LDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHhcCCeEEEEecccccHhhcCEEEE-EECCeeeecCCHHhhhc
Confidence 9999999994 44567999975 99999999999999987
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=291.84 Aligned_cols=219 Identities=16% Similarity=0.231 Sum_probs=160.5
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQH---HA---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECCe---ee---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 4689999999999742 34 66799999999999999999999999999999998610001268999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .. .....++.++|++|+...+.. ++.+|+.++.............+++.++++.+++.+.+
T Consensus 84 ~-~~-~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 145 (259)
T PRK14274 84 G-KV-DLVELRKNIGMVFQKGNPFPQ-----------SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV----- 145 (259)
T ss_pred c-cc-CHHHHhhceEEEecCCccccc-----------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----
Confidence 0 00 001113356777776543322 33344443322111112344456678889999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+.+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.+
T Consensus 146 --------~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 217 (259)
T PRK14274 146 --------KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA 217 (259)
T ss_pred --------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 0135788999999999999999999 999999883 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
..+|||+++ |++|++++.|++++++..+.++++..++
T Consensus 218 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14274 218 ARVSDQTAF-FYMGELVECNDTNKMFSNPDDQRTLDYI 254 (259)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHhhCCCCHHHHHhh
Confidence 889999975 9999999999999999887777665544
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=291.90 Aligned_cols=214 Identities=15% Similarity=0.152 Sum_probs=157.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe----
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~---- 145 (347)
++|+++|+++.|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (258)
T PRK11701 5 PLLSVRGLTKLYGPR---KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQLR 73 (258)
T ss_pred ceEEEeeeEEEcCCc---ee---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCcccccc
Confidence 579999999999742 34 677999999999999999999999999999999999 999999999987
Q ss_pred -CCCCccccccccCCCccceeeccccc--cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 146 -GDGTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 146 -i~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
+............++.++|++|+... +... ++.+|+.+..............+++.++++.+++.+.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 74 DLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV----------SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAA 143 (258)
T ss_pred ccccCCHHHHHHHhhcceEEEeeCcccccCccc----------cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChh
Confidence 43110000001123346777777531 1111 1223332211111111123445677889999999631
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
.+++.+.+||||||||++||||| ||||++||. |.|||+
T Consensus 144 ----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 207 (258)
T PRK11701 144 ----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred ----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 34789999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+|| +.+..+||++++ |++|++++.|++++++..+.++++..++.
T Consensus 208 isH~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK11701 208 VTHDLAVARLLAHRLLV-MKQGRVVESGLTDQVLDDPQHPYTQLLVS 253 (258)
T ss_pred EeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 999 567789999975 99999999999999988777666555543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=285.56 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=146.3
Q ss_pred cEEEeeeEEEeCCCce-eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~-~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++|++++|+.... .++ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 4889999999975311 134 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. ...++.++|++|+...+... +.+|+.+ ..... ........+++.++++.+|+.+
T Consensus 72 -~~---~~~~~~i~~~~q~~~~~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 -EP---AEARRRLGFVSDSTGLYDRLTARENLEY-----------FAGLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred -CH---HHHHhhEEEecCCcccCcCCCHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 00 11133567777766444332 4444433 21111 1223455677889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.+++.+.+||||||||++||||| ||||++||. |+|+|++|| ++
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecC
Q 019048 282 LLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g 302 (347)
+..+||++++ |++|++++.|
T Consensus 199 ~~~~~d~i~~-l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVVV-LHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEEE-EECCEEeecC
Confidence 8889999975 9999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=291.22 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=160.6
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|++++|++ . .+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE-K--RA---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC-c--ee---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 4578999999999974 2 34 6669999999999999999999999999999998631100158999999999874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... . .....++.++|++|+...+.. ++.+|+.++.............+.+.++++.+++...+
T Consensus 92 ~~~-~-~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 154 (268)
T PRK14248 92 DSN-I-NVVNLRREIGMVFQKPNPFPK-----------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV---- 154 (268)
T ss_pred ccc-c-cHHHHhccEEEEecCCccCcc-----------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch----
Confidence 110 0 011123346677766543332 33444443321111111223345677788888885311
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
....++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 155 ---------~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 225 (268)
T PRK14248 155 ---------KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225 (268)
T ss_pred ---------HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH
Confidence 1135788999999999999999999 999999883 689999999 46
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||++++ |++|++++.|++++++..+.++++..++.
T Consensus 226 ~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T PRK14248 226 ALRVSDRTAF-FLNGDLVEYDQTEQIFTSPKQQKTEDYIN 264 (268)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHHHh
Confidence 7889999975 99999999999999998888887765543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=316.77 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=167.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
++++|+++.|++++ ++ ++++||++++|+.+||||+||||||||+++|+|+++ |++|+|.+||.++.
T Consensus 321 i~~~~l~~~y~~g~--~~---l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-----~~~G~I~vng~~l~---- 386 (559)
T COG4988 321 ISLENLSFRYPDGK--PA---LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-----PTQGEIRVNGIDLR---- 386 (559)
T ss_pred eeecceEEecCCCC--cc---cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-----CCCceEEECCcccc----
Confidence 44559999998775 34 566999999999999999999999999999999999 99999999999876
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.....+++....+|.|++.++..++.+|+.++.. ...++.+.++++..|+.+.+.. |+++.
T Consensus 387 -----------~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-------~~s~e~i~~al~~a~l~~~v~~-p~GLd 447 (559)
T COG4988 387 -----------DLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-------DASDEEIIAALDQAGLLEFVPK-PDGLD 447 (559)
T ss_pred -----------ccCHHHHHhHeeeeCCCCccccccHHHHhhccCC-------cCCHHHHHHHHHHhcHHHhhcC-CCccc
Confidence 3445556666677888888888888888875443 2335678889999999887655 88888
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhcc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~a 286 (347)
+++.+.+ ..|||||+||+++|||| ||||++||. ++|+|+||| .....-+
T Consensus 448 t~ige~G------~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~ 521 (559)
T COG4988 448 TVIGEGG------AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA 521 (559)
T ss_pred chhccCC------CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcC
Confidence 8888774 48999999999999999 999999982 899999999 4666779
Q ss_pred cEEEEEeeCCeEeecCCcccccCC
Q 019048 287 DRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 287 Dri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|++ |++|++++.|.++++..+
T Consensus 522 D~I~v-ld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 522 DRIVV-LDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CEEEE-ecCCceeccCCHHHHhhc
Confidence 99965 999999999999998765
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=289.43 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=158.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+++++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~- 72 (246)
T PRK14269 2 IAKTTNLNLFYGK-K--QA---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQ- 72 (246)
T ss_pred ceeeeeeEEEECC-E--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccC-
Confidence 4889999999974 2 34 666999999999999999999999999999999974100 6899999999987511
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC-ChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ....++.++|++|+...+. .++.+|+.++....... ......+++.++++.+++.+.+
T Consensus 73 --~-~~~~~~~i~~~~q~~~l~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 132 (246)
T PRK14269 73 --D-VVALRKNVGMVFQQPNVFV-----------KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV------ 132 (246)
T ss_pred --C-HHHHhhhEEEEecCCcccc-----------ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh------
Confidence 0 0111334566666644332 34445554432211111 1234456678899999996421
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
.+..++.+.+|||||+||++||||| ||||++||. ++|+|++|| +.+.
T Consensus 133 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 133 -------KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred -------hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 0134778899999999999999999 999999873 899999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 206 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (246)
T PRK14269 206 RVADYTAF-FHLGELIEFGESKEFFENPKQEKTKAYLS 242 (246)
T ss_pred hhCcEEEE-EECCEEEEECCHHHHHhCCCcHHHHHHhh
Confidence 89999975 99999999999999987776666554443
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=294.53 Aligned_cols=201 Identities=15% Similarity=0.230 Sum_probs=154.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+.+. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGT--EA---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 588999999996332 24 667999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.......++.++|++|+... .++..++.+|+.++.... ........+++.++++.++|.+
T Consensus 70 -~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--------- 129 (275)
T PRK13639 70 -KKSLLEVRKTVGIVFQNPDD---------QLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG--------- 129 (275)
T ss_pred -cchHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 00000113345666666421 111124445554432211 2233455667889999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
+.++++.+|||||+||++||||| ||||++||. |.|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 130 --------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 56889999999999999999999 999999873 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
.+||++++ |++|++++.|++++++..+
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 202 VYADKVYV-MSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcCh
Confidence 89999975 9999999999999887654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=290.44 Aligned_cols=218 Identities=19% Similarity=0.259 Sum_probs=160.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+|+++|+++.|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~-~--~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-F--HA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC-e--EE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 467999999999974 2 34 66699999999999999999999999999999998511011479999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+. .++.+|+.++.......+.....+++.++++.+++...+
T Consensus 85 ~--~~~~~~~~~~i~~~~q~~~~~~-----------~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 146 (260)
T PRK10744 85 P--KQDIALLRAKVGMVFQKPTPFP-----------MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV----- 146 (260)
T ss_pred c--ccchHHHhcceEEEecCCccCc-----------CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-----
Confidence 0 0011112345667777654332 234444443322111223344556788999999985321
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 147 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~ 218 (260)
T PRK10744 147 --------KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQA 218 (260)
T ss_pred --------HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 1135788999999999999999999 999999884 689999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
..+||++++ |++|++++.|++++++..+.++++..+
T Consensus 219 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 254 (260)
T PRK10744 219 ARCSDYTAF-MYLGELIEFGNTDTIFTKPAKKQTEDY 254 (260)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 789999975 999999999999999888877776544
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=284.49 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=156.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+..|+. .++ |++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|+|++
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit-- 68 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDIT-- 68 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecC--
Confidence 68999999999986 566 555999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..+.+...+..++|++|..+.|..+ |.+|+.+ +....+. +......++++.+.+ |.+
T Consensus 69 -~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~-----------g~~~~~~--~~~~~~~~e~v~~lF---P~L----- 126 (237)
T COG0410 69 -GLPPHERARLGIAYVPEGRRIFPRLTVEENLLL-----------GAYARRD--KEAQERDLEEVYELF---PRL----- 126 (237)
T ss_pred -CCCHHHHHhCCeEeCcccccchhhCcHHHHHhh-----------hhhcccc--cccccccHHHHHHHC---hhH-----
Confidence 3334555677888999888777655 5555544 3221111 011111134444443 222
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
.+.++++..+|||||||.++||||| ||||.||.+ |+||++|.+ .
T Consensus 127 --------ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 127 --------KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred --------HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 1246889999999999999999999 999999753 789999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 312 (347)
.+.++|||.+| |..|+++.+|+.+++..+|.
T Consensus 199 ~Al~iaDr~yv-le~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 199 FALEIADRGYV-LENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHhhCEEEE-EeCCEEEEecCHHHHhcCHH
Confidence 89999999986 99999999999999987754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=290.66 Aligned_cols=212 Identities=16% Similarity=0.153 Sum_probs=158.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+.+|+++||++.|+. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 356999999999974 234 666999999999999999999999999999999999 999999999988641
Q ss_pred Ccc-------c--cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCC
Q 019048 149 TYF-------L--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 219 (347)
Q Consensus 149 ~~~-------~--~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl 219 (347)
... . +.....++.++|++|+...+... ++.+|+.++............++++.++++.+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI 141 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCC----------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 000 0 00011133455666654433222 3444444322111112234556778899999999
Q ss_pred CcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE
Q 019048 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 274 (347)
Q Consensus 220 ~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti 274 (347)
... ..++++.+||||||||++||||| ||||++||. |+||
T Consensus 142 ~~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 142 DER----------------AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred Chh----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 762 12778999999999999999999 999999873 8999
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
|++|| +.+..+|||+++ |++|++++.|++++++..+.+++...
T Consensus 206 iivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 250 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIF-LHQGKIEEEGAPEQLFGNPQSPRLQQ 250 (257)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHhhhCccCHHHHH
Confidence 99999 567789999975 99999999999999887666555443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=295.88 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=154.2
Q ss_pred cEEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+|+++||++.|+.+. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 488999999996321 1134 667999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..........++.++|++|+... .++..++.+|+.++.... ........+++.++++.+||...
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------ 137 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEA---------QLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED------ 137 (287)
T ss_pred ccccchHHHHHhceEEEEeChhh---------hhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000001112345666665310 112224556655443211 22345556678899999999731
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ----------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 138 ----------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999884 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.++||++++ |++|++++.|++++++..
T Consensus 208 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 208 VAEYADDVLV-LEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 8899999975 999999999999887654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=288.78 Aligned_cols=213 Identities=19% Similarity=0.254 Sum_probs=158.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc---ccCCCCCC--CCcEEEECCE
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 144 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl---~~~~~~~p--~~G~I~~~g~ 144 (347)
++|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+ ++ | ++|+|.++|+
T Consensus 2 ~~l~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHA---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECC---EeE---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 57999999999975 234 6669999999999999999999999999999997 34 4 5899999999
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
++.... . .....++.++|++|+...+. .++.+|+.++.............+++.++++.+++.+.+
T Consensus 71 ~~~~~~-~-~~~~~~~~i~~v~q~~~~~~-----------~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 136 (250)
T PRK14245 71 NIYDKG-V-QVDELRKNVGMVFQRPNPFP-----------KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV- 136 (250)
T ss_pred eccccc-c-cHHHHhhheEEEecCCccCc-----------ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-
Confidence 875110 0 01111334667776643332 233444443322111111233456778899999986421
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
.+.+++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 137 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 137 ------------KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred ------------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0135788999999999999999999 999999884 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+.+.++||++++ |++|++++.|++++++.++.+++++.++
T Consensus 205 ~~~~~~~~d~v~~-l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14245 205 MQQAARVSDKTAF-FYMGEMVEYDDTKKIFTNPEKEATQNYI 245 (250)
T ss_pred HHHHHhhCCEEEE-EECCEEEEECCHHHHhcCCCChHHHHhh
Confidence 577899999975 9999999999999999888777765544
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=306.83 Aligned_cols=195 Identities=17% Similarity=0.179 Sum_probs=152.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe----CCCCccccccccCCCccceeecc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYD 168 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~----i~~~~~~~~~~~~r~~~~~~~~~ 168 (347)
|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|++ +......+.....++.++|++|+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 566999999999999999999999999999999999 999999999973 32110000111122345666666
Q ss_pred ccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCC
Q 019048 169 TRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (347)
Q Consensus 169 ~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LS 248 (347)
...+..+ ++.+|+.++.... ..+..+.++++.++++.+||.+ ..++++.+||
T Consensus 115 ~~l~p~~----------Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~-----------------~~~~~~~~LS 166 (382)
T TIGR03415 115 FALMPWL----------TVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQ-----------------WADKKPGELS 166 (382)
T ss_pred CcCCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhhCC
Confidence 5444322 4455555443221 2334556678899999999987 4589999999
Q ss_pred HHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEee
Q 019048 249 VEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLG 300 (347)
Q Consensus 249 gGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~ 300 (347)
||||||++||||| ||||++||. ++|+|+||| +++.++|||+++ |++|++++
T Consensus 167 gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v-l~~G~iv~ 245 (382)
T TIGR03415 167 GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI-MEGGRIIQ 245 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEE
Confidence 9999999999999 999999874 789999999 578899999975 99999999
Q ss_pred cCCcccccCCCCCCChHHHHH
Q 019048 301 IPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 301 ~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.|++++++..|...+++.++.
T Consensus 246 ~g~~~ei~~~p~~~~~~~~~~ 266 (382)
T TIGR03415 246 HGTPEEIVLNPANDYVADFVA 266 (382)
T ss_pred ecCHHHHhhCcchHHHHHHhc
Confidence 999999998887777776655
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=287.98 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=152.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (241)
T PRK10895 2 ATLTAKNLAKAYKG-R--RV---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISLL 70 (241)
T ss_pred ceEEEeCcEEEeCC-E--EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 47999999999974 2 34 666999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .....++.++|++|+...+... ++.+|+.+.............+.++.++++.+++..
T Consensus 71 ~---~~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 129 (241)
T PRK10895 71 P---LHARARRGIGYLPQEASIFRRL----------SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-------- 129 (241)
T ss_pred C---HHHHHHhCeEEeccCCcccccC----------cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH--------
Confidence 0 1111233456666665443322 333444332211111123344567888999999976
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 200 (241)
T PRK10895 130 ---------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET 200 (241)
T ss_pred ---------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 45888999999999999999999 999999883 889999999 478
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..+||++++ |++|++++.|++++++..
T Consensus 201 ~~~~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 201 LAVCERAYI-VSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCEEEE-EeCCeEEeeCCHHHHhcC
Confidence 899999975 999999999999887653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=282.48 Aligned_cols=203 Identities=15% Similarity=0.160 Sum_probs=168.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|.++|+.++|+. .++ +++|||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.++|.|++.
T Consensus 2 ~~~L~a~~l~K~y~k---r~V---v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~ 70 (243)
T COG1137 2 MSTLVAENLAKSYKK---RKV---VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITK 70 (243)
T ss_pred CcEEEehhhhHhhCC---eee---eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCccccc
Confidence 457999999999986 345 455999999999999999999999999999999999 999999999999972
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhcc-CCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.+-+...|..++|.+|+...|..+ |.+|+..... ... .....+.+.++.++|+.+++.+
T Consensus 71 ---lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE-----------~~~~d~~~~~~~~~l~~LL~ef~i~h----- 131 (243)
T COG1137 71 ---LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----------IREKDLKKAERKEELDALLEEFHITH----- 131 (243)
T ss_pred ---CChHHHhhcCcccccccchHhhcCcHHHHHHHHHh-----------hhhcchhHHHHHHHHHHHHHHhchHH-----
Confidence 223333466788888888777666 6666654332 221 1122344556789999999998
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
+.+++..+||||||+|+.||||| |||++|.|+ |..|++.-|
T Consensus 132 ------------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 132 ------------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred ------------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 77999999999999999999999 999999886 889999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 314 (347)
.+...+|||.++ +++|+++..|+++++.+++...
T Consensus 200 REtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~Vr 233 (243)
T COG1137 200 RETLDICDRAYI-ISDGKVLAEGSPEEIVNNEDVR 233 (243)
T ss_pred HHHHhhhheEEE-EecCeEEecCCHHHHhcChhhh
Confidence 689999999986 9999999999999999887644
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=288.45 Aligned_cols=216 Identities=16% Similarity=0.162 Sum_probs=156.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe----
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~---- 145 (347)
++|+++|+++.|+.. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG---KG---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCc---eE---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 479999999999742 34 666999999999999999999999999999999999 999999999876
Q ss_pred -CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 146 -GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 146 -i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
+............++.++|++|+....... ..++.+++................+.+.++++.+++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-- 140 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRM--------RVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPT-- 140 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCcccccCc--------cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChh--
Confidence 431100000001123467777775311100 001222222111000011112334677889999999632
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEe
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 278 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiT 278 (347)
.+++.+.+||||||||++||||| ||||++||. |.|+|++|
T Consensus 141 --------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vs 206 (253)
T TIGR02323 141 --------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206 (253)
T ss_pred --------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35889999999999999999999 999999873 78999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
| +.+..+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 207 H~~~~~~~~~d~~~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 207 HDLGVARLLAQRLLV-MQQGRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred CCHHHHHHhcCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 9 577789999975 99999999999999988777777665553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=280.21 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||++.+++++|++ .+++++| |||++++|++++|+|||||||||+||+|++++. |++|.|+++|.|..
T Consensus 1 Ml~v~~l~K~y~~--~v~Avrd---VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~--- 67 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRD---VSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV--- 67 (245)
T ss_pred CeeeeehhhhccC--HHhhhhh---eeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc---
Confidence 6899999999976 3457555 999999999999999999999999999999999 99999999998864
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
+.....|+++|..+.+...+..+ +.||+.++... ..+.+.+++.++.++.+.++|.+
T Consensus 68 --~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L------------~~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 68 --RDPSFVRRKIGVLFGERGLYARLTARENLKYFARL------------NGLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred --cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH------------hhhhhhHHHHHHHHHHHHhChHH--------
Confidence 12233466777777443333333 56666554431 13446788899999999999988
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC----------------CCCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tiIiiTH--~~~ 282 (347)
.+++...++|-||||||+||||| ||||+||| +|++||++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999987 2999999999 689
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..+|||+++ +++|+++..|+++++...
T Consensus 197 ealCDrviv-lh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 197 EALCDRVIV-LHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHhhheEEE-EecCcEEEcCCHHHHHHH
Confidence 999999975 999999999999877654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=290.66 Aligned_cols=219 Identities=17% Similarity=0.235 Sum_probs=160.1
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++|+++||++.|+. . .+ |+|+||+|++|++++|+||||||||||+++|+|+++.....|++|+|+++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~~-~--~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE-K--QA---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC-E--EE---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 4568999999999974 2 34 6779999999999999999999999999999999971000028999999999874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC-CChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
... . .....++.++|++|+...+...+.+| +.++...... .......+++.++++.+++...+
T Consensus 90 ~~~-~-~~~~~~~~i~~v~q~~~~~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 153 (267)
T PRK14235 90 DPR-L-DVVELRARVGMVFQKPNPFPKSIYEN-----------VAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--- 153 (267)
T ss_pred ccc-c-chHHHhhceEEEecCCCCCCCcHHHH-----------HHHHHHhcccccchHHHHHHHHHHHHHcCCchhh---
Confidence 100 0 01112335677777654433234444 4333211111 12234456788899999996421
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--h
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 280 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~ 280 (347)
.+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 154 ----------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 154 ----------KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred ----------hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 0134788999999999999999999 999999884 689999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
.+..+||++++ |++|++++.|++++++..+.++.++.+
T Consensus 224 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 261 (267)
T PRK14235 224 QAARVSQRTAF-FHLGNLVEVGDTEKMFTNPDDPRTQDY 261 (267)
T ss_pred HHHhhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHH
Confidence 77899999975 999999999999999877766655444
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=287.28 Aligned_cols=215 Identities=18% Similarity=0.213 Sum_probs=157.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC---CCcEEEECCEeC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 146 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p---~~G~I~~~g~~i 146 (347)
++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++.. | ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~---~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYNKK---KA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEECCe---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 579999999999742 34 66699999999999999999999999999999985311 4 589999999987
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
... .......++.++|++|+...+. .++.+|+.++.............+++.++++.+++...+
T Consensus 75 ~~~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 138 (252)
T PRK14239 75 YSP--RTDTVDLRKEIGMVFQQPNPFP-----------MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--- 138 (252)
T ss_pred cCc--ccchHhhhhcEEEEecCCccCc-----------CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH---
Confidence 410 0011112335667776654332 233444443321111111233456678889999885421
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--h
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 280 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~ 280 (347)
.+..++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 139 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 208 (252)
T PRK14239 139 ----------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208 (252)
T ss_pred ----------HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence 1135788999999999999999999 999999883 689999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.+..+|||+++ |++|++++.|++++++..+.++++..++
T Consensus 209 ~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14239 209 QASRISDRTGF-FLDGDLIEYNDTKQMFMNPKHKETEDYI 247 (252)
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 67889999975 9999999999999998887776655443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=271.77 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=156.8
Q ss_pred CcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+|+++++++.-+.+. .+.+ |++|+|.|++||.+|||||||||||||+-+++||.. |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 4799999999886543 2456 555999999999999999999999999999999999 999999999999864
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...-....+..+.++|+||.+.....+ +..+||..+..... .........+.++|+.+||...
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~l----------tAlENV~lPleL~g-e~~~~~~~~A~~lL~~vGLg~R------ 139 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNL----------TALENVALPLELRG-ESSADSRAGAKALLEAVGLGKR------ 139 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccc----------hhhhhccchhhhcC-CccccHHHHHHHHHHHhCcccc------
Confidence 333333344566778888776654333 44567766665332 2234556678899999999984
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~ 281 (347)
++.||.+||||+||||+||||+ ||||.+||. |+|+|+||| ..
T Consensus 140 -----------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 140 -----------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred -----------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 4899999999999999999999 999999984 999999999 46
Q ss_pred HHhcccEEEEEeeCCeEeec
Q 019048 282 LLSLTDRARIRTYLGELLGI 301 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~ 301 (347)
++..|+|++ .|..|+++++
T Consensus 209 LA~Rc~R~~-r~~~G~l~~~ 227 (228)
T COG4181 209 LAARCDRQL-RLRSGRLVED 227 (228)
T ss_pred HHHhhhhee-eeecceeccC
Confidence 677799994 7999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=287.46 Aligned_cols=217 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++||++.|++. .+ ++|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEECCc---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 368999999999742 34 666999999999999999999999999999999875111112689999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. .....++.++|++|+...+. .++.+|+.++............++++.++++.+++.+.+
T Consensus 76 -~~-~~~~~~~~i~~~~q~~~~~~-----------~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------ 136 (250)
T PRK14240 76 -DI-DVNQLRKRVGMVFQQPNPFP-----------MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV------ 136 (250)
T ss_pred -cc-chHHHhccEEEEecCCccCc-----------ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 00 01112334667776644332 233344443322111112334566788889999875321
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
....++++.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 137 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14240 137 -------KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS 209 (250)
T ss_pred -------HHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 0135788999999999999999999 999999884 789999999 5688
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
.+||++++ |++|++++.|++++++..+.++++..+
T Consensus 210 ~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14240 210 RISDKTAF-FLNGEIVEFGDTVDLFTNPKDKRTEDY 244 (250)
T ss_pred hhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHh
Confidence 89999975 999999999999999888777776544
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=283.88 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=150.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-- 67 (232)
T cd03218 1 LRAENLSKRYGK---RKV---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKL-- 67 (232)
T ss_pred CeEEEEEEEeCC---EEe---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccC--
Confidence 578999999974 234 566999999999999999999999999999999999 9999999999886411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
......++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 -~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 125 (232)
T cd03218 68 -PMHKRARLGIGYLPQEASIFRKL----------TVEENILAVLEIR-GLSKKEREEKLEELLEEFHITH---------- 125 (232)
T ss_pred -CHhHHHhccEEEecCCccccccC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00011123456666665443332 3334443322111 1123344567788999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+..
T Consensus 126 -------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 126 -------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLS 198 (232)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999983 789999999 57889
Q ss_pred cccEEEEEeeCCeEeecCCcccccC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+||++++ |++|+++..|++++++.
T Consensus 199 ~~d~i~~-l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 199 ITDRAYI-IYEGKVLAEGTPEEIAA 222 (232)
T ss_pred hCCEEEE-EECCeEEEEeCHHHhhc
Confidence 9999975 99999999999887764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=282.98 Aligned_cols=186 Identities=18% Similarity=0.243 Sum_probs=144.7
Q ss_pred EEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 72 l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
|+++|++++|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG-- 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc--
Confidence 57899999996421 1234 666999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.++.++|++|+...+... +.+|+ .++.... ........+++.++++.+++.+
T Consensus 71 -------~~~~i~~v~q~~~~~~~~tv~e~l-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 123 (220)
T cd03293 71 -------PGPDRGYVFQQDALLPWLTVLDNV-----------ALGLELQ-GVPKAEARERAEELLELVGLSG-------- 123 (220)
T ss_pred -------ccCcEEEEecccccccCCCHHHHH-----------HHHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 123457777765444322 44444 3222111 1223344567888999999986
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 124 ---------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 124 ---------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 45888999999999999999999 999999873 689999999 46
Q ss_pred HHhcccEEEEEee--CCeEeecCCc
Q 019048 282 LLSLTDRARIRTY--LGELLGIPPA 304 (347)
Q Consensus 282 ~~~~aDri~v~l~--~G~iv~~g~~ 304 (347)
+..+||++++ |+ +|++++.++.
T Consensus 195 ~~~~~d~i~~-l~~~~G~i~~~~~~ 218 (220)
T cd03293 195 AVFLADRVVV-LSARPGRIVAEVEV 218 (220)
T ss_pred HHHhCCEEEE-EECCCCEEEEEEEe
Confidence 7889999975 99 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=292.40 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=151.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQDE---PV---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCCc---cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 58999999999742 34 666999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.. .....++.++|++|+.... ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ~~-~~~~~~~~i~~v~q~~~~~---------~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (271)
T PRK13638 69 KR-GLLALRQQVATVFQDPEQQ---------IFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH--------- 128 (271)
T ss_pred cC-CHHHHHhheEEEeeChhhc---------cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 00 0011133456777664321 11112334443322211 1223445567788999999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.+.
T Consensus 129 --------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 129 --------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred --------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999883 789999999 5777
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.+||++++ |++|++++.|++++++..
T Consensus 201 ~~~d~i~~-l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 201 EISDAVYV-LRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 89999975 999999999999887664
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=288.08 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=156.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-----CCcEEEECCE
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSS 144 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-----~~G~I~~~g~ 144 (347)
++|+++||+++|+. . .+ |+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+
T Consensus 3 ~~l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 3 FAIETVNLRVYYGS-N--HV---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE-----LNEEARVEGEVRLFGR 71 (253)
T ss_pred ceEEEEeEEEEeCC-e--ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----cccCCCCceEEEECCE
Confidence 47999999999964 2 34 666999999999999999999999999999999998 6 4999999999
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC-CChHHHHHHHHHHHHHCCCCccc
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
++..... ... ..++.++|++|+...+... ++.+|+.++...... .......+++.++++.+++...+
T Consensus 72 ~i~~~~~-~~~-~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (253)
T PRK14267 72 NIYSPDV-DPI-EVRREVGMVFQYPNPFPHL----------TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139 (253)
T ss_pred Ecccccc-ChH-HHhhceeEEecCCccCCCC----------cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch
Confidence 8741000 000 1133456777665443332 333444332211111 12334456678899999986421
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 279 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH 279 (347)
....++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 140 -------------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 206 (253)
T PRK14267 140 -------------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206 (253)
T ss_pred -------------hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 0135788999999999999999999 999999984 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+.+..+||++++ |++|++++.|++++++..+.++.+..+
T Consensus 207 ~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14267 207 SPAQAARVSDYVAF-LYLGKLIEVGPTRKVFENPEHELTEKY 247 (253)
T ss_pred CHHHHHhhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 567889999975 999999999999998877655544433
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=292.09 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=152.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|+++.|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 1 ml~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 1 MIRLENVSYSYPDGT--PA---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDFS 70 (274)
T ss_pred CEEEEEEEEEcCCCC--ce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCccc
Confidence 589999999995332 24 677999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.....++.++|++|+.... ++..++.+|+.++.... ........+++.++++.+||.+
T Consensus 71 ---~~~~~~~~i~~v~q~~~~~---------~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 128 (274)
T PRK13644 71 ---KLQGIRKLVGIVFQNPETQ---------FVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK--------- 128 (274)
T ss_pred ---cHHHHHhheEEEEEChhhh---------cccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 0011123456666654210 11124455554433211 2234455677888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+|||||+||++||||| ||||++||. |.|||++|| +.+
T Consensus 129 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~- 199 (274)
T PRK13644 129 --------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL- 199 (274)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-
Confidence 45889999999999999999999 999999873 899999999 455
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
..||++++ |++|++++.|++++++..+
T Consensus 200 ~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 200 HDADRIIV-MDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred hhCCEEEE-EECCEEEEECCHHHHhcCh
Confidence 56999975 9999999999998887654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=301.65 Aligned_cols=202 Identities=17% Similarity=0.230 Sum_probs=156.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||++ ||+++|++ . ..++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~---~-----~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGD---L-----CLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCC---E-----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 5788 99999964 2 125999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
........++.++|++|+...+..+ ++.+|+.++.. ....+++.++++.++|.+
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~--------- 120 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHY----------KVRGNLRYGMA-------KSMVAQFDKIVALLGIEP--------- 120 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCC----------cHHHHHHhhhh-------hhhHHHHHHHHHHcCCch---------
Confidence 0000011133455666654433322 45555554322 123456888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
++++++.+||||||||++||||| ||||++||. |+|+|+||| +++
T Consensus 121 --------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 121 --------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 56899999999999999999999 999999983 789999999 578
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+||++++ |++|+++..|++++++..|...+...++.
T Consensus 193 ~~~~d~i~~-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 193 LRLADRVVV-LEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHhCCEEEE-EeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 899999975 99999999999999999987666555554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=292.84 Aligned_cols=199 Identities=16% Similarity=0.218 Sum_probs=153.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|+... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-TYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSEE 74 (279)
T ss_pred ceEEEEEEEEEeCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 5799999999996422 124 667999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.... .++.++|++|+... .++..++.+|+.++.... .....+..+++.++++.+||.+
T Consensus 75 ---~~~~-~~~~i~~~~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-------- 132 (279)
T PRK13635 75 ---TVWD-VRRQVGMVFQNPDN---------QFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED-------- 132 (279)
T ss_pred ---cHHH-HhhheEEEEeCHHH---------hcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 0111 12345666665421 111225556665543221 2234455677899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 133 ---------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 45889999999999999999999 999999873 689999999 45
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+. .||++++ |++|++++.|++++++..
T Consensus 204 ~~-~~d~i~~-l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 204 AA-QADRVIV-MNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HH-cCCEEEE-EECCEEEEECCHHHHhcC
Confidence 54 5999975 999999999999887664
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=286.68 Aligned_cols=214 Identities=15% Similarity=0.194 Sum_probs=160.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-----CcEEEECCE
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 144 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-----~G~I~~~g~ 144 (347)
++|+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~---~~i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQV---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNE 71 (251)
T ss_pred ceEEEEEEEEEECC---eeE---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCE
Confidence 57999999999974 234 666999999999999999999999999999999998 75 699999998
Q ss_pred eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
++... .......++.++|++|+...+ +.++.+|+.++.............+.+.++++.+++.+.+
T Consensus 72 ~~~~~--~~~~~~~~~~i~~v~q~~~~~-----------~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l- 137 (251)
T PRK14249 72 NIYSP--NLDVVNLRKRVGMVFQQPNPF-----------PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV- 137 (251)
T ss_pred Ecccc--ccChHHhhceEEEEecCCccC-----------cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-
Confidence 86410 000111234456666664433 2244455544322111111223445677788888876421
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
.+.+++.+.+|||||+||++||||| ||||++||. ++|||++||
T Consensus 138 ------------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~ 205 (251)
T PRK14249 138 ------------KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205 (251)
T ss_pred ------------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1145889999999999999999999 999999883 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+.+..+||++++ |++|++++.|++++++..+.++.+..++.
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14249 206 MQQAARASDWTGF-LLTGDLVEYGRTGEIFSRPRDKRTEDYIT 247 (251)
T ss_pred HHHHHhhCCEEEE-EeCCeEEEeCCHHHHHhCCCChHHHHHHh
Confidence 578899999975 99999999999999999888887766554
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=286.90 Aligned_cols=220 Identities=17% Similarity=0.230 Sum_probs=161.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++|++++|+. . .+ |+|+||+|++||+++|+|+||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 3 ~~l~~~nl~~~~~~-~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK-N--HA---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC-e--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 46899999999974 2 34 666999999999999999999999999999999985110003689999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . .....++.++|++|+...+... ++.+|+.++.............+++.++++.+++....
T Consensus 77 ~-~-~~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 138 (252)
T PRK14256 77 G-V-DPVSIRRRVGMVFQKPNPFPAM----------SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV------ 138 (252)
T ss_pred c-C-ChHHhhccEEEEecCCCCCCcC----------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 0 0 0111234567777765444322 33344433222111112334456678899999986421
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 139 -------~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~ 211 (252)
T PRK14256 139 -------KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAA 211 (252)
T ss_pred -------hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHH
Confidence 0134678999999999999999999 999999873 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 212 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14256 212 RVSDYTAF-FYMGDLVECGETKKIFTTPEKKQTEDYIT 248 (252)
T ss_pred hhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHh
Confidence 99999975 99999999999999999888888766554
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=289.04 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~---~~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEECC---eee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 457999999999964 234 66699999999999999999999999999999998610000479999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+. .++.+|+.++.............+++.++++.+++.+.+
T Consensus 92 ~--~~~~~~~~~~i~~v~q~~~~~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 153 (267)
T PRK14237 92 K--EINVYEMRKHIGMVFQRPNPFA-----------KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV----- 153 (267)
T ss_pred c--cCChHHHhcceEEEecCCcccc-----------ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----
Confidence 0 0001111335677776644332 234455444322111112344556788899999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+.+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 154 --------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 225 (267)
T PRK14237 154 --------KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA 225 (267)
T ss_pred --------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 1145889999999999999999999 999999984 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
..+||++++ |++|++++.|++++++..+.+.++..+
T Consensus 226 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 261 (267)
T PRK14237 226 ARASDYTAF-FYLGDLIEYDKTRNIFTNPKLQSTNDY 261 (267)
T ss_pred HHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHh
Confidence 899999975 999999999999999887776655444
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=286.41 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=160.2
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 3 ~~l~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEECC---eee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 68999999999974 234 666999999999999999999999999999999987100001789999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . .....++.++|++|+...+...+.+|+ .++.............+++.++++.+++.+.+
T Consensus 77 ~-~-~~~~~~~~i~~~~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14270 77 D-V-DVVELRKRVGMVFQKPNPFPMSIYDNV-----------AYGPRIHGIKDKKELDKIVEWALKKAALWDEV------ 137 (251)
T ss_pred c-c-cHHHHHhheEEEecCCCcCCCcHHHHH-----------HhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh------
Confidence 0 0 001113346777776544432244444 33221111112234456678899999885311
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
....++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 138 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~ 210 (251)
T PRK14270 138 -------KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQAS 210 (251)
T ss_pred -------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHH
Confidence 0135788999999999999999999 999999983 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.+|||+++ |++|++++.|++++++..+.++.+..++
T Consensus 211 ~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14270 211 RVSDYTAF-FLMGDLIEFNKTEKIFLEPQKKETEDYI 246 (251)
T ss_pred HhcCEEEE-EECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence 89999975 9999999999999999888888766543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=277.93 Aligned_cols=185 Identities=13% Similarity=0.195 Sum_probs=143.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNV---TA---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCe---ee---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 5789999999752 34 666999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03301 67 ---LPPKDRDIAMVFQNYALYPHM----------TVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEH---------- 122 (213)
T ss_pred ---CCcccceEEEEecChhhccCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 111123456776665433322 3334443322111 1223445567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 123 -------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 123 -------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred -------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
.+||++++ |++|++++.|
T Consensus 196 ~~~d~i~~-l~~g~~~~~g 213 (213)
T cd03301 196 TMADRIAV-MNDGQIQQIG 213 (213)
T ss_pred HhcCeEEE-EECCEEEecC
Confidence 89999975 9999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=322.64 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=161.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++|++|+|+.+..+ |+|+||++++|++++|+|+||||||||+|+|+|+++ |++|+|.++|.++.
T Consensus 334 ~I~~~~vsf~y~~~~~i-----L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~--- 400 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQG-----VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIR--- 400 (588)
T ss_pred eEEEEEEEEEeCCCCce-----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhh---
Confidence 59999999999743334 667999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.+.....+...++++|++.++..++.+|+.++.. . ..++++.++++.+++.+.+..+|+++
T Consensus 401 ------------~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~---~----~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 401 ------------TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP---D----ATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred ------------hCCHHHHHhheEEEecCcccccccHHHHHhcCCC---C----CCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 2333444455566667777777777788775421 1 12345677788888877666666777
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
.+.+.+. ...||||||||++||||| ||||++||. ++|+|+||| ....+.
T Consensus 462 dt~i~~~------g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~ 535 (588)
T PRK13657 462 DTVVGER------GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN 535 (588)
T ss_pred cchhcCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh
Confidence 6666553 457999999999999999 999999984 799999999 466678
Q ss_pred ccEEEEEeeCCeEeecCCcccccCC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
||++++ |++|++++.|++++++..
T Consensus 536 ~D~ii~-l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 536 ADRILV-FDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCEEEE-EECCEEEEeCCHHHHHHC
Confidence 999965 999999999999998754
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=268.26 Aligned_cols=205 Identities=16% Similarity=0.134 Sum_probs=170.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.. ++ |.||+|+-++||.+.|+||||+|||||+|.|+-+.- |.+|+..+.|....-+..
T Consensus 3 irv~~in~~yg~~---q~---lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 3 IQLNGINCFYGAH---QA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred eEEcccccccccc---hh---eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccccC
Confidence 7899999999863 34 666999999999999999999999999999999888 999999998865431111
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
+. .-...+.|...++|||...+++. ++.+|+...+....+.++.+.+.++.++|+++.|.+
T Consensus 72 ~~---------~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------- 133 (242)
T COG4161 72 PS---------DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------- 133 (242)
T ss_pred cc---------HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc---------
Confidence 11 11234555666778888888777 888888877665667778888999999999999998
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
+++++|-.|||||+|||+||||| ||||++||+ |.|-+++|| +.+.
T Consensus 134 --------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 134 --------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred --------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 67999999999999999999999 999999985 999999999 6888
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
+.|.+++ .|++|+|++.|++. .|.+|..+.
T Consensus 206 k~as~vv-yme~g~ive~g~a~-~ft~p~te~ 235 (242)
T COG4161 206 KTASRVV-YMENGHIVEQGDAS-CFTEPQTEA 235 (242)
T ss_pred hhhhheE-eeecCeeEeecchh-hccCccHHH
Confidence 9999996 59999999999984 566655443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=282.94 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=145.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||+++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (222)
T cd03224 1 LEVENLNAGYGKS---QI---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLP- 68 (222)
T ss_pred CEEeeEEeecCCe---eE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCC-
Confidence 5789999999742 34 666999999999999999999999999999999999 99999999998874111
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC-CCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~~~~~ 230 (347)
.....++.++|++|+...+..+ ++.+|+.++..... .....+++.++++.+ +++.
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~--------- 124 (222)
T cd03224 69 --PHERARAGIGYVPEGRRIFPEL----------TVEENLLLGAYARR---RAKRKARLERVYELFPRLKE--------- 124 (222)
T ss_pred --HHHHHhcCeEEeccccccCCCC----------cHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh---------
Confidence 1111123456666665433322 34444443322111 123345566777777 4655
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.+.
T Consensus 125 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred --------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5678
Q ss_pred hcccEEEEEeeCCeEeecCCcccccC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+||++++ |++|++++.|++++++.
T Consensus 197 ~~~d~i~~-l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 197 EIADRAYV-LERGRVVLEGTAAELLA 221 (222)
T ss_pred HhccEEEE-eeCCeEEEeCCHHHHhc
Confidence 99999975 99999999998877653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=321.50 Aligned_cols=227 Identities=14% Similarity=0.126 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.+....|+.++++.+++.... ...-|+++||+|+|++... .+ |+|+||+|++|++++|+|+||||||||+
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~inl~i~~G~~v~IvG~sGsGKSTLl 375 (571)
T TIGR02203 300 GLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR-PA---LDSISLVIEPGETVALVGRSGSGKSTLV 375 (571)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCC-cc---ccCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 344566777776544332111 1234999999999964322 34 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
++|+|+++ |++|+|+++|.++. .+...+.+...++++|++.++..++.+|+..+..
T Consensus 376 ~lL~gl~~-----~~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~---- 431 (571)
T TIGR02203 376 NLIPRFYE-----PDSGQILLDGHDLA---------------DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT---- 431 (571)
T ss_pred HHHHhccC-----CCCCeEEECCEeHH---------------hcCHHHHHhhceEEccCcccccccHHHHHhcCCC----
Confidence 99999999 99999999999876 2333444455566677777777777777765421
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
+...++++.++++.+|+++.+.+.|+++.+.|++.+ ..||||||||++||||+ ||||++||.
T Consensus 432 --~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g------~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 432 --EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG------VLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred --CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 112346678889999998877778888888887663 47999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ......||+|++ |++|++++.|++++++..
T Consensus 504 ~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~-l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 504 SERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVV-MDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEE-EeCCEEEeeCCHHHHHHc
Confidence 799999999 566788999965 999999999999998764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=280.25 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=140.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|++++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV--AA---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCc--ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCC
Confidence 489999999995222 34 666999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.......++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (214)
T TIGR02673 71 -GRQLPLLRRRIGVVFQDFRLLPDR----------TVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH--------- 129 (214)
T ss_pred -HHHHHHHHhheEEEecChhhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000001123456666654433222 3444444332211 1223345567889999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 130 --------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 34888999999999999999999 999999883 799999999 5788
Q ss_pred hcccEEEEEeeCCe
Q 019048 284 SLTDRARIRTYLGE 297 (347)
Q Consensus 284 ~~aDri~v~l~~G~ 297 (347)
.+||++++ |++|+
T Consensus 202 ~~~d~i~~-l~~G~ 214 (214)
T TIGR02673 202 RVAHRVII-LDDGR 214 (214)
T ss_pred HhcCEEEE-ecCCC
Confidence 89999975 99884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=286.21 Aligned_cols=216 Identities=18% Similarity=0.238 Sum_probs=156.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~-~--~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGE-K--KA---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCC-c--ee---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 57999999999974 2 34 666999999999999999999999999999999987111112799999999887421
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . .....++.++|++|+...+. .++.+|+.++............++.+.++++.+++...+
T Consensus 76 ~-~-~~~~~~~~i~~~~q~~~~~~-----------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 136 (250)
T PRK14262 76 Q-L-DVTEYRKKVGMVFQKPTPFP-----------MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------ 136 (250)
T ss_pred h-h-hHHHhhhhEEEEecCCccCc-----------ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------
Confidence 0 0 01112335677777654332 233344433221111112234456678889999986421
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
....++.+.+|||||+||++||||| ||||++||. ++|+|++|| +.+.
T Consensus 137 -------~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 137 -------KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred -------HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 1135888999999999999999999 999999873 789999999 4678
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
.+||++++ |++|+++..|+++++...+.++.++.
T Consensus 210 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~ 243 (250)
T PRK14262 210 RIADYIAF-MYRGELIEYGPTREIVERPKNKLTEE 243 (250)
T ss_pred HhCCEEEE-EECCEEEEecCHHHHHhCCCChHHHH
Confidence 89999975 99999999999999887665554433
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=281.77 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=146.5
Q ss_pred CcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++||++.|+.+. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK 75 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 5799999999996432 1234 666999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....+.....++.++|++|+...+..+ +.+|+.+ +.... .......++++.++++.+|+.+
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~gl~~------ 137 (233)
T PRK11629 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAM-----------PLLIG-KKKPAEINSRALEMLAAVGLEH------ 137 (233)
T ss_pred CCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 111000011123467777775444332 4444433 21111 1223445567889999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 138 -----------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 138 -----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45888999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
+.+.. +|++++ |++|++++.++.
T Consensus 207 ~~~~~-~~~~~~-l~~G~i~~~~~~ 229 (233)
T PRK11629 207 QLAKR-MSRQLE-MRDGRLTAELSL 229 (233)
T ss_pred HHHHh-hCEEEE-EECCEEEEEecc
Confidence 45555 578864 999999987753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=287.49 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=156.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++..+..|++|+|.++|+++....
T Consensus 4 ~l~i~~v~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HA---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCE---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 69999999999742 34 6669999999999999999999999999999999971110126999999998874100
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .....++.++|++|+...+... +.+|+ .++.............+++.++++.+++.+.+
T Consensus 78 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 138 (258)
T PRK14241 78 V--DPVAVRRTIGMVFQRPNPFPTMSIRDNV-----------VAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------ 138 (258)
T ss_pred c--ChHHHhcceEEEccccccCCCCcHHHHH-----------HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 0 0011233567777765444332 44444 33221111112344556788899999985311
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
....++.+.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 139 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 139 -------KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred -------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0135788999999999999999999 999999884 689999999 5778
Q ss_pred hcccEEEEEee------CCeEeecCCcccccCCCCCCChHH
Q 019048 284 SLTDRARIRTY------LGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 284 ~~aDri~v~l~------~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
++||++++ |+ +|++++.|++++++..+.+++++.
T Consensus 212 ~~~d~i~~-l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK14241 212 RVSDQTAF-FNLEATGKPGRLVEIDDTEKIFSNPTQKATED 251 (258)
T ss_pred HhCCEEEE-EecccCCCCceEEecCCHHHHHhCcCcHHHHH
Confidence 89999975 86 899999999999987766555443
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=284.62 Aligned_cols=218 Identities=19% Similarity=0.191 Sum_probs=159.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred CeEEEeccEEEECC---eee---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 46999999999974 234 666999999999999999999999999999999998111112589999999886310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .....++.++|++|+...+...+.+| +.++.............+++.++++.+++.+.+
T Consensus 76 ~---~~~~~~~~i~~~~q~~~~~~~tv~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 135 (249)
T PRK14253 76 I---DVADLRIKVGMVFQKPNPFPMSIYEN-----------VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV------ 135 (249)
T ss_pred c---chHHHHhheeEEecCCCcCcccHHHH-----------HHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh------
Confidence 0 01112334677777654443224444 433221111111234456677888888886421
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
.+.+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 136 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 208 (249)
T PRK14253 136 -------KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208 (249)
T ss_pred -------hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 1135788999999999999999999 999999884 689999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.+||++++ |++|++++.|++++++..+.++++..++.
T Consensus 209 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (249)
T PRK14253 209 RISDRTAF-FLMGELVEHDDTQVIFSNPKDDRTQGYVN 245 (249)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHcCCCChHHHHHhh
Confidence 89999975 99999999999999988777777655543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=285.80 Aligned_cols=220 Identities=20% Similarity=0.229 Sum_probs=159.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+.. .+ |+|+||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEK---HA---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCe---ee---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 3589999999999742 34 67799999999999999999999999999999997511000148999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. ......++.++|++|+...+.. ++.+|+.++............++.+.++++.+++.+.+
T Consensus 78 ~~--~~~~~~~~~i~~~~q~~~~~~~-----------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 139 (253)
T PRK14261 78 SG--ADVVALRRKIGMVFQRPNPFPK-----------SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV----- 139 (253)
T ss_pred cc--cchhhhhceEEEEecCCccCcc-----------cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-----
Confidence 10 0011113345677666543322 34444443322111112234456677888888885421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++.+.+||||||||++||||| ||||++||. ++|||++|| ..+
T Consensus 140 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 140 --------KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred --------HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 1134788999999999999999999 999999874 689999999 467
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+||++++ |++|++++.|++++++..+.++.++.++.
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14261 212 ARVSDYTGF-MYLGKLIEFDKTTQIFENPHEELTENYIT 249 (253)
T ss_pred HhhCCEEEE-EECCEEEEcCCHHHHHhCCCcHHHHHHhc
Confidence 789999975 99999999999999988877777665553
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=285.41 Aligned_cols=219 Identities=17% Similarity=0.215 Sum_probs=158.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|+. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~---~~~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC---eee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 47999999999974 234 666999999999999999999999999999999986100002799999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ......++.++|++|+...+...+.+| +.++.............+++.++++.+++....
T Consensus 77 ~--~~~~~~~~~i~~~~q~~~~~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 K--MDLVELRKEVGMVFQQPTPFPFSVYDN-----------VAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred c--chHHHhhccEEEEecCCccCCCcHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0 011112334677777654332224444 433221111111233445677889999885310
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0134788999999999999999999 999999984 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
++||++++ |++|++++.|++++++..+.+..++.++.
T Consensus 211 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14251 211 RISDQTAF-LMNGDLIEAGPTEEMFIAPKKQITSDYLN 247 (251)
T ss_pred hhcCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 89999975 99999999999999988888776655543
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=280.68 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=142.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|+++.|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--QA---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCC--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCC
Confidence 488999999994233 34 667999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.......++.++|++|+...+... ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (222)
T PRK10908 71 -NREVPFLRRQIGMIFQDHHLLMDR----------TVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD--------- 129 (222)
T ss_pred -hhHHHHHHhheEEEecCccccccc----------cHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000011123456666665433222 3344444332111 1223444566788999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 130 --------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred --------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999984 789999999 5788
Q ss_pred hcccEEEEEeeCCeEee
Q 019048 284 SLTDRARIRTYLGELLG 300 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~ 300 (347)
.+||++++ |++|+++.
T Consensus 202 ~~~d~i~~-l~~G~i~~ 217 (222)
T PRK10908 202 RRSYRMLT-LSDGHLHG 217 (222)
T ss_pred HhCCEEEE-EECCEEcc
Confidence 89999975 99999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=284.43 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=149.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGA-H--QA---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECC-e--ee---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 4899999999964 2 34 666999999999999999999999999999999999 99999999998863100
Q ss_pred cccc--cccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQE--YTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~--~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.... ....++.++|++|+...+... +.+|+.... ............+++.++++.+|++.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~------ 133 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAP-----------CRVLGLSKDQALARAEKLLERLRLKP------ 133 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHH-----------HHHcCCCHHHHHHHHHHHHHHcCChh------
Confidence 0000 011133456777765544332 444443211 10111122344567888999999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
.+++++.+||||||||++||||| ||||++||. |+|+|++|| +
T Consensus 134 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 134 -----------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999874 799999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
.+..+||++++ |++|++++.|+++++.
T Consensus 203 ~~~~~~d~i~~-l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 203 VARKTASRVVY-MENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCEEEE-EECCEEEEeCCHHHhc
Confidence 67788999975 9999999999987653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=291.24 Aligned_cols=201 Identities=15% Similarity=0.202 Sum_probs=153.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC---cEEEECCEe
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 145 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~---G~I~~~g~~ 145 (347)
..+|+++|+++.|+... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 3 ~~~l~i~~l~~~~~~~~-~~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSK-KPA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred CceEEEEEEEEEcCCCC-ccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 35799999999996422 134 666999999999999999999999999999999999 887 899999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 146 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
+... .....++.++|++|+... .++..++.+|+.++... ......+..+++.++++.++|.+
T Consensus 74 ~~~~----~~~~~~~~ig~v~q~~~~---------~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---- 135 (282)
T PRK13640 74 LTAK----TVWDIREKVGIVFQNPDN---------QFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLD---- 135 (282)
T ss_pred CCcC----CHHHHHhheEEEEECHHH---------hhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChh----
Confidence 7511 000112245566655421 01112455555543221 12334556677889999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
+.++++.+|||||+||++||||| ||||++||. |+|||++||
T Consensus 136 -------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 136 -------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46899999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+ ..||++++ |++|++++.|++++++..+
T Consensus 203 ~~~~~-~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 203 DIDEA-NMADQVLV-LDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred CHHHH-HhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 455 57999975 9999999999998887653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=279.31 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=140.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~- 69 (214)
T cd03292 1 IEFINVTKTYPNGT--AA---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLR- 69 (214)
T ss_pred CEEEEEEEEeCCCc--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCC-
Confidence 47899999996432 24 677999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.......++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++++
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 128 (214)
T cd03292 70 GRAIPYLRRKIGVVFQDFRLLPDR----------NVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH---------- 128 (214)
T ss_pred HHHHHHHHHheEEEecCchhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 000011123456666654433322 3444444332211 1223445567888999999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +.+..
T Consensus 129 -------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 129 -------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred -------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999984 799999999 57778
Q ss_pred cccEEEEEeeCCeE
Q 019048 285 LTDRARIRTYLGEL 298 (347)
Q Consensus 285 ~aDri~v~l~~G~i 298 (347)
+||++++ |++|++
T Consensus 202 ~~d~i~~-l~~G~~ 214 (214)
T cd03292 202 TRHRVIA-LERGKL 214 (214)
T ss_pred hCCEEEE-EeCCcC
Confidence 9999975 999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=287.07 Aligned_cols=218 Identities=17% Similarity=0.224 Sum_probs=158.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~---~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC---EEE---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 468999999999975 235 56699999999999999999999999999999998611111489999999988641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. .+. ...++.++|++|+. .++..++.+|+.++.... ... ....+++.++++.+++...+
T Consensus 85 ~~-~~~-~~~~~~i~~v~q~~-----------~l~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l----- 144 (269)
T PRK14259 85 PR-VDP-VEVRRRIGMVFQQP-----------NPFPKSIYENIAFGARIN-GYT-GDMDELVERSLRKAAVWDEC----- 144 (269)
T ss_pred cc-CCH-HHHhhceEEEccCC-----------ccchhhHHHHHhhhhhhc-CCc-HHHHHHHHHHHHHhCCcchh-----
Confidence 00 000 00122345555543 333335566665543211 111 23345677788888874311
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 145 --------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 216 (269)
T PRK14259 145 --------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQA 216 (269)
T ss_pred --------hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1145788999999999999999999 999999883 689999999 578
Q ss_pred HhcccEEEEEeeC-----------CeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~-----------G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+||++++ |++ |++++.|++++++..+.+++++.++.
T Consensus 217 ~~~~d~i~~-l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T PRK14259 217 VRVSDMTAF-FNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYIS 265 (269)
T ss_pred HHhcCEEEE-EeccccccccccccceEEEeCCHHHHHhCcCChHHHHHHh
Confidence 899999975 986 67999999999999888887665553
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=289.81 Aligned_cols=201 Identities=15% Similarity=0.214 Sum_probs=153.5
Q ss_pred CcEEEeeeEEEeCCCc---eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 70 SLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~---~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++|+++|++++|+... ...+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i 74 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLDT 74 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEec
Confidence 5799999999996421 1234 666999999999999999999999999999999999 9999999999887
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
... ......++.++|++|+.... ++..++.+++.++.... .......++++.++++.+||.+
T Consensus 75 ~~~---~~~~~~~~~i~~v~q~~~~~---------~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~----- 136 (280)
T PRK13633 75 SDE---ENLWDIRNKAGMVFQNPDNQ---------IVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE----- 136 (280)
T ss_pred ccc---ccHHHHhhheEEEecChhhh---------hccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh-----
Confidence 411 00011133456666654211 11123445555443221 2234555677889999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+.++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 137 ------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+.. ||++++ |++|++++.|++++++..
T Consensus 205 ~~~~~~-~d~v~~-l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 205 MEEAVE-ADRIIV-MDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred hHHHhc-CCEEEE-EECCEEEEecCHHHHhcC
Confidence 45554 999975 999999999999988765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=285.01 Aligned_cols=196 Identities=13% Similarity=0.179 Sum_probs=148.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGK-I--QA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCC-c--ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 357999999999974 2 34 666999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC-CCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~~ 227 (347)
. ......++.++|++|+...+... ++.+|+.++... .......+.+.++++.+ ++.+
T Consensus 72 ~---~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~------ 129 (237)
T PRK11614 72 W---QTAKIMREAVAIVPEGRRVFSRM----------TVEENLAMGGFF---AERDQFQERIKWVYELFPRLHE------ 129 (237)
T ss_pred C---CHHHHHHhCEEEeccCcccCCCC----------cHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHH------
Confidence 1 00011133456777665444322 333444332110 01122344566677777 4654
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 130 -----------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred -----------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 34778999999999999999999 999999873 899999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+.++|||+++ |++|++++.|++++++.
T Consensus 199 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 199 QALKLADRGYV-LENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhhCCEEEE-EeCCEEEeeCCHHHHhc
Confidence 68899999975 99999999999988864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=321.84 Aligned_cols=222 Identities=13% Similarity=0.195 Sum_probs=166.0
Q ss_pred CCcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++|+++||++.|+... ..++ |++|||+|++||++||+||||||||||+|+|+|+++ |++|.|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~~ 81 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLLR 81 (623)
T ss_pred CceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEec
Confidence 56899999999996321 2345 566999999999999999999999999999999999 99999999997552
Q ss_pred CC-----cc--cccc---ccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHH
Q 019048 148 GT-----YF--LQEY---TIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216 (347)
Q Consensus 148 ~~-----~~--~~~~---~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~ 216 (347)
.. .. .... ...++.++|++|+... .+++ .++.+|+.++...+...+..+.++++.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~---------~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT---------SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQ 152 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchh---------hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 10 00 0000 0112234555554310 1222 25556665554322233455667788999999
Q ss_pred CCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------
Q 019048 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 270 (347)
Q Consensus 217 ~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------- 270 (347)
+||.+.. ..+++++++||||||||++||||| ||||++||.
T Consensus 153 ~gL~~~~--------------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~ 218 (623)
T PRK10261 153 VRIPEAQ--------------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM 218 (623)
T ss_pred CCCCChh--------------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc
Confidence 9996410 145899999999999999999999 999999873
Q ss_pred CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 271 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 271 g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|+|||+||| +.+..+||||++ |++|++++.|++++++..+.+++++.++..
T Consensus 219 g~tvi~itHdl~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~~~~~~~~l~~~ 271 (623)
T PRK10261 219 SMGVIFITHDMGVVAEIADRVLV-MYQGEAVETGSVEQIFHAPQHPYTRALLAA 271 (623)
T ss_pred CCEEEEEcCCHHHHHHhCCEEEE-eeCCeecccCCHHHhhcCCCChhhhhhhhc
Confidence 789999999 578899999975 999999999999999988888877666543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=279.09 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=139.1
Q ss_pred EEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 72 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 72 l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
|+++||+++|+.+. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhcc
Confidence 57899999996421 0134 666999999999999999999999999999999999 99999999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
........++.++|++|+...+..+ ++.+|+.++.... ........+++.++++.+|+++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 132 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLPDL----------TALENVELPLLLA-GVPKKERRERAEELLERVGLGD--------- 132 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCCCC----------cHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 0000011123456777665444332 3334443332211 1222344567888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 133 --------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 133 --------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred --------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 45888999999999999999999 999999873 689999999 455
Q ss_pred HhcccEEEEEeeCCeE
Q 019048 283 LSLTDRARIRTYLGEL 298 (347)
Q Consensus 283 ~~~aDri~v~l~~G~i 298 (347)
. +||++++ |++|++
T Consensus 205 ~-~~d~v~~-l~~G~i 218 (218)
T cd03255 205 E-YADRIIE-LRDGKI 218 (218)
T ss_pred h-hhcEEEE-eeCCcC
Confidence 5 8999975 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=281.43 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=148.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~- 68 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRA---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRA- 68 (236)
T ss_pred CEEEEeeEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccC-
Confidence 4889999999974 234 666999999999999999999999999999999999 9999999999887411
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.. . .++.++|++|+...+... ++.+|+.+..... ........+.+.++++.+|+++
T Consensus 69 --~~-~-~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 124 (236)
T TIGR03864 69 --PR-A-ALARLGVVFQQPTLDLDL----------SVRQNLRYHAALH-GLSRAEARERIAALLARLGLAE--------- 124 (236)
T ss_pred --Ch-h-hhhhEEEeCCCCCCcccC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 00 0 112456777665433222 2333333221111 1223344567888999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
.+++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 125 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 125 --------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence 45889999999999999999999 999999873 689999999 455
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. .||++++ |++|++++.|++++++..
T Consensus 197 ~-~~d~i~~-l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 197 E-ADDRLVV-LHRGRVLADGAAAELRGA 222 (236)
T ss_pred h-hCCEEEE-EeCCeEEEeCCHHHHHHH
Confidence 5 5999975 999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=284.39 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=144.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~---~i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGER---TV---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 3679999999999742 34 677999999999999999999999999999999999 99999999987653
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .++.++|++|+...+... ++.+|+.++.. ....+++.++++.+++.+
T Consensus 78 -----~---~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------- 125 (257)
T PRK11247 78 -----E---AREDTRLMFQDARLLPWK----------KVIDNVGLGLK-------GQWRDAALQALAAVGLAD------- 125 (257)
T ss_pred -----H---hhCceEEEecCccCCCCC----------cHHHHHHhccc-------chHHHHHHHHHHHcCChh-------
Confidence 1 123456776664433221 34455443221 112456788999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 126 ----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 126 ----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~ 305 (347)
.+..+||++++ |++|++++.++.+
T Consensus 196 ~~~~~~d~i~~-l~~G~i~~~~~~~ 219 (257)
T PRK11247 196 EAVAMADRVLL-IEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhCCEEEE-EECCEEEeecccc
Confidence 67889999975 9999999988764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=346.50 Aligned_cols=227 Identities=12% Similarity=0.175 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhhhhhh--hc----------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCC
Q 019048 47 QRRRDAVFREVLQSYDQL--RT----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~~----------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGs 114 (347)
.+....|+.++++.+++. .+ ....-|+++||+|+|+.+...++ |+|+||+|++|+++||||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEEEECCCCC
Confidence 344566777877654321 00 01134999999999974322345 5569999999999999999999
Q ss_pred hHHHHHHHHhhcccCCCCCC------------------------------------------------------CCcEEE
Q 019048 115 GKSSLVNRISKVFENDKFAS------------------------------------------------------ERAQVT 140 (347)
Q Consensus 115 GKSTLlk~L~gl~~~~~~~p------------------------------------------------------~~G~I~ 140 (347)
|||||+++|+|+|+ | ++|+|+
T Consensus 1206 GKSTl~~LL~r~yd-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~ 1280 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYD-----LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKIL 1280 (1466)
T ss_pred CHHHHHHHHHHhCC-----CccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEE
Confidence 99999999999999 6 699999
Q ss_pred ECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 141 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 141 ~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
+||.++. .+...+.+...++|.|++.+|..++.+|+.++.. ....+++.++++..+++
T Consensus 1281 idG~di~---------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1281 LDGVDIC---------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRACKFAAID 1338 (1466)
T ss_pred ECCEEHH---------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCCH
Confidence 9999987 3556667777788888888888889999987632 11245688899999999
Q ss_pred cccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ti 274 (347)
+.+...|+++.+.|++.+ ..||||||||++||||| |||||+||. ++|+
T Consensus 1339 ~fI~~LP~GydT~VGe~G------~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~Tv 1412 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYG------KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412 (1466)
T ss_pred HHHHhCccccCCccCCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEE
Confidence 988899999999998774 47999999999999999 999999873 5899
Q ss_pred EEEec-hHHHhcccEEEEEeeC----CeEe-ecCCcccccCC
Q 019048 275 VVVTH-GDLLSLTDRARIRTYL----GELL-GIPPAKQIFDI 310 (347)
Q Consensus 275 IiiTH-~~~~~~aDri~v~l~~----G~iv-~~g~~~~l~~~ 310 (347)
|+||| -...+.||+|++ |++ |+++ +.|+|++++..
T Consensus 1413 IiIaHRlsti~~aD~Ivv-l~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1413 ITIAHRIASIKRSDKIVV-FNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred EEEechHHHHHhCCEEEE-EeCCCCCCCEEEEecCHHHHHhc
Confidence 99999 466678999975 999 9965 89999999864
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=279.92 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=140.1
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++||+++|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 478999999996431 0134 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHH-HHHHHHHCCCCcccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~--~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~-i~~~l~~~gl~~~~~~~ 226 (347)
. .+.....++.++|++|+.. .+..+ ++.+|+.++.............+. +.++++.+++...
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (228)
T cd03257 73 S-RRLRKIRRKEIQMVFQDPMSSLNPRM----------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE---- 137 (228)
T ss_pred c-hhhHHHhhccEEEEecCchhhcCCcC----------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh----
Confidence 0 0000112335667776652 11112 333443332211111111122222 3578899999531
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
..++.+.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 ------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 138 ------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred ------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35888999999999999999999 999999873 689999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g 302 (347)
+.+..+||++++ |++|++++.|
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~g 228 (228)
T cd03257 206 LGVVAKIADRVAV-MYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCeEEE-EeCCEEEecC
Confidence 567779999975 9999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=288.02 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=158.5
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|+++.|+.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 21 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED---HA---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred CceEEEEeeeEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 35689999999999742 24 6779999999999999999999999999999999851111148999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... . .....++.++|++|+...+. .++.+|+.++.......+.....+.+.++++.+++...+
T Consensus 95 ~~~-~-~~~~~~~~i~~v~q~~~~~~-----------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---- 157 (271)
T PRK14238 95 DKS-Y-SVEELRTNVGMVFQKPNPFP-----------KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL---- 157 (271)
T ss_pred ccc-c-cHHHHhhhEEEEecCCcccc-----------ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH----
Confidence 100 0 01111334567776654332 234455444322111112223345567777777653211
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 158 ---------~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 158 ---------KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred ---------HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 1135788999999999999999999 999999984 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+.++||++++ |++|++++.|++++++..+.+++++.++
T Consensus 229 i~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 266 (271)
T PRK14238 229 AARISDKTAF-FLNGYVNEYDDTDKIFSNPSDKRTEDYI 266 (271)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHcCCCCHHHHHHH
Confidence 7889999975 9999999999999998888776655544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=293.45 Aligned_cols=193 Identities=14% Similarity=0.171 Sum_probs=154.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+++++|++++|++ ..+ |+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~---~~~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~-- 68 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ-- 68 (301)
T ss_pred EEEEEEEEEEECC---EEE---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 4899999999974 345 666999999999999999999999999999999999 999999999988752
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.....++.++|++|+...+..+ +.+|+.+.. .. ...+.....+++.++++.+||.+
T Consensus 69 ---~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~-----------~~-~~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 69 ---NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIA-----------GI-YGMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred ---ChHHHHhceEEecCCCCCCCCCcHHHHHHHHH-----------HH-cCCCHHHHHHHHHHHHHHCCCch--------
Confidence 0111234567777776554443 555544321 11 11223445567889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
.+++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999874 789999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCcccccC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+|||+++ |++|+++..|+++++..
T Consensus 197 ~~~d~i~~-l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 197 AICDRVII-INKGKIVADKKLDELSA 221 (301)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHH
Confidence 99999975 99999999999998854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=289.43 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=153.6
Q ss_pred CcEEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..|+++|++++|+.... ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 45999999999964321 124 677999999999999999999999999999999999 99999999998864
Q ss_pred CCc-cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~-~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
... ........++.++|++|+... .++..++.+|+.++.... ........+++.++++.++|...
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~---- 142 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEY---------QLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED---- 142 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcch---------hhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 100 000001112345666665321 122235556665543211 12234445667889999999531
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 143 ------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 143 ------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+.++||++++ |++|++++.|++++++..+
T Consensus 211 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 211 MDQVLRIADEVIV-MHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 567899999975 9999999999998876543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=289.01 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=151.5
Q ss_pred EEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++||+++|+.... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 889999999964220 134 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+... .++..++.+|+.++.... ........+++.++++.++|...
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------- 137 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPES---------QLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES------- 137 (280)
T ss_pred ccccCHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000001112345666665310 111124445544332211 12234455677889999999742
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 138 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 138 ---------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 34788999999999999999999 999999873 789999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..+||++++ |++|++++.|++++++..
T Consensus 209 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 209 ANYADFVYV-LEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 889999975 999999999999888664
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=287.61 Aligned_cols=200 Identities=13% Similarity=0.215 Sum_probs=152.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+.+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~l~~~nl~~~~~~~~-~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-NNA---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITISK 75 (271)
T ss_pred ceEEEEEeEEEEcCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCc
Confidence 46899999999996322 234 667999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. .. ...++.++|++|+.. .+.. .++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ~---~~-~~~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (271)
T PRK13632 76 E---NL-KEIRKKIGIIFQNPDNQFIG----------ATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED------ 134 (271)
T ss_pred C---CH-HHHhcceEEEEeCHHHhcCc----------ccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH------
Confidence 0 00 111334566666642 1211 24445554432211 1223445567889999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 135 -----------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 45889999999999999999999 999999984 389999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+ ..||++++ |++|++++.|++++++..+
T Consensus 204 ~~~-~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 204 DEA-ILADKVIV-FSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hHH-hhCCEEEE-EECCEEEEecCHHHHhcCH
Confidence 455 47999975 9999999999988876643
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=286.95 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=151.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+... ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~l~i~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-SFT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITD 75 (269)
T ss_pred CceEEEEEEEEEcCCCC-Ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 46899999999996432 124 667999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. ... ..++.++|++|+.. .+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 76 ~---~~~-~~~~~i~~v~q~~~~~~~~~----------~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (269)
T PRK13648 76 D---NFE-KLRKHIGIVFQNPDNQFVGS----------IVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE------ 134 (269)
T ss_pred C---CHH-HHHhheeEEEeChHHhcccc----------cHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1 000 11234566666642 22211 2334443332211 1223445567888999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 135 -----------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+. .|||+++ |++|++++.|++++++..
T Consensus 204 ~~~~-~~d~i~~-l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 204 SEAM-EADHVIV-MNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred hHHh-cCCEEEE-EECCEEEEecCHHHHhcC
Confidence 4555 4999975 999999999999888665
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=277.54 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=137.5
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
+++|++++|+.+.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---- 66 (205)
T cd03226 1 RIENISFSYKKGTE--I---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKA---- 66 (205)
T ss_pred CcccEEEEeCCcCc--e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhh----
Confidence 47899999964222 3 677999999999999999999999999999999999 999999999988641
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
...++.++|++|+... .++..++.+|+.++.... . ...+++.++++.+++.+
T Consensus 67 ---~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~-~----~~~~~~~~~l~~~~l~~----------- 118 (205)
T cd03226 67 ---KERRKSIGYVMQDVDY---------QLFTDSVREELLLGLKEL-D----AGNEQAETVLKDLDLYA----------- 118 (205)
T ss_pred ---HHhhcceEEEecChhh---------hhhhccHHHHHhhhhhhc-C----ccHHHHHHHHHHcCCch-----------
Confidence 1112345666665321 111224556655433211 1 11256788999999987
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHhc
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~~ 285 (347)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+..+
T Consensus 119 ------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 119 ------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred ------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 45889999999999999999999 999999883 789999999 567789
Q ss_pred ccEEEEEeeCCeEe
Q 019048 286 TDRARIRTYLGELL 299 (347)
Q Consensus 286 aDri~v~l~~G~iv 299 (347)
||++++ |++|+++
T Consensus 193 ~d~i~~-l~~G~iv 205 (205)
T cd03226 193 CDRVLL-LANGAIV 205 (205)
T ss_pred CCEEEE-EECCEEC
Confidence 999975 9999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=286.28 Aligned_cols=218 Identities=16% Similarity=0.192 Sum_probs=158.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++...-.|++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---QA---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECCe---eE---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 4579999999999642 34 66699999999999999999999999999999998710000379999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+
T Consensus 97 ~--~~~~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 158 (272)
T PRK14236 97 K--KVDVAELRRRVGMVFQRPNPFPK-----------SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV----- 158 (272)
T ss_pred c--ccCHHHHhccEEEEecCCccCcc-----------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----
Confidence 0 00011113355677766543322 34444443321111112233456678889999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 159 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~ 230 (272)
T PRK14236 159 --------KDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA 230 (272)
T ss_pred --------HHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence 1135788999999999999999999 999999984 689999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
..+||++++ |++|++++.|++++++..+.+.++..+
T Consensus 231 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 266 (272)
T PRK14236 231 ARVSDYTAF-MYMGKLVEYGDTDTLFTSPAKKQTEDY 266 (272)
T ss_pred HhhCCEEEE-EECCEEEecCCHHHHhcCCCcHHHHHH
Confidence 889999975 999999999999999887776665443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=277.75 Aligned_cols=185 Identities=14% Similarity=0.108 Sum_probs=141.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+++||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~---~~~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 66 (211)
T cd03264 1 LQLENLTKRYGK---KRA---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQ-- 66 (211)
T ss_pred CEEEEEEEEECC---EEE---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccc--
Confidence 579999999964 234 66699999999 999999999999999999999999 9999999999876411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. ...++.++|++|+...+..+ ++.+|+.+..... .....+..+++.++++.+++.+
T Consensus 67 -~--~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (211)
T cd03264 67 -P--QKLRRRIGYLPQEFGVYPNF----------TVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGD---------- 122 (211)
T ss_pred -h--HHHHhheEEecCCCcccccC----------CHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHH----------
Confidence 0 11133456666665444332 3334433322111 1223344567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..+
T Consensus 123 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 123 -------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESL 195 (211)
T ss_pred -------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 45889999999999999999999 999999883 789999999 567789
Q ss_pred ccEEEEEeeCCeEeecC
Q 019048 286 TDRARIRTYLGELLGIP 302 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g 302 (347)
|||+++ |++|++++.|
T Consensus 196 ~d~i~~-l~~g~i~~~g 211 (211)
T cd03264 196 CNQVAV-LNKGKLVFEG 211 (211)
T ss_pred CCEEEE-EECCEEEecC
Confidence 999975 9999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=284.81 Aligned_cols=209 Identities=16% Similarity=0.233 Sum_probs=153.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 72 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLA---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEGL 72 (255)
T ss_pred ceEEEeeEEEEECC---EEE---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCCC
Confidence 57999999999964 234 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHH-hhhhhhhhhcc--CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM-EGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~-~~v~~~~~~~~--~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .....+..++|++|+...+..+ +.+|+.+...... ..+..+..... ........+.+.++++.+|+.+
T Consensus 73 ~---~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 145 (255)
T PRK11300 73 P---GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE---- 145 (255)
T ss_pred C---HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh----
Confidence 0 0111122356667766555443 5555543211000 00000000000 0011233456788899999976
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 146 -------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 146 -------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred -------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 45899999999999999999999 999999873 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+..+||++++ |++|++++.|++++++..
T Consensus 213 ~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 213 DMKLVMGISDRIYV-VNQGTPLANGTPEEIRNN 244 (255)
T ss_pred CHHHHHHhCCEEEE-EECCeEEecCCHHHHhhC
Confidence 577889999975 999999999998887643
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=276.02 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=163.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+. ..+ |+++|++|++|.+++|+||||||||||+.++++|++ .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y~~---~~v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~--- 66 (252)
T COG4604 1 MITIENVSKSYGT---KVV---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELT--- 66 (252)
T ss_pred CeeehhhhHhhCC---EEe---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeecc---
Confidence 5899999999986 345 555999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhh-hhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~-~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
++.-++.........|.-.+..+ +|.+-+.||. ...++....+.+..+.++++.++|++
T Consensus 67 ------------~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 67 ------------STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred ------------cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 33333433333333333333333 7888888874 33445556788899999999999998
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+.+++..+||||||||+.||+.| |||..+||- |+||++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 67999999999999999999999 999999983 999999999 7
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++.+|+|.|+. |++|+++..|++++++..
T Consensus 198 fAS~YsD~IVA-lK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 198 FASCYSDHIVA-LKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred HHHhhhhheee-ecCCEEEecCCHHHhcCH
Confidence 99999999964 999999999999999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=288.59 Aligned_cols=219 Identities=19% Similarity=0.250 Sum_probs=158.6
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++||++.|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGD-E--QA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECC-E--ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 4578999999999964 2 34 6669999999999999999999999999999999861000047999999998864
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... . .....++.++|++|+...+.. ++.+|+.++.... ... ....+++.++++.+++...+
T Consensus 110 ~~~-~-~~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~i---- 170 (285)
T PRK14254 110 DAD-V-DPVALRRRIGMVFQKPNPFPK-----------SIYDNVAYGLKIQ-GYD-GDIDERVEESLRRAALWDEV---- 170 (285)
T ss_pred ccc-c-chHhhhccEEEEecCCccCcC-----------CHHHHHHHHHHHc-CCc-HHHHHHHHHHHHHcCCCchh----
Confidence 110 0 011123356677766543322 3334443322111 111 23456788899999986421
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 171 ---------~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~ 241 (285)
T PRK14254 171 ---------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241 (285)
T ss_pred ---------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999883 679999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||++++|++|++++.|++++++..+.+++++.++
T Consensus 242 i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 280 (285)
T PRK14254 242 AARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI 280 (285)
T ss_pred HHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence 788999975557999999999999988777766655443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=287.32 Aligned_cols=219 Identities=17% Similarity=0.204 Sum_probs=159.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. . .+ |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~~-~--~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFAG-K--TV---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEECC-E--EE---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 568999999999974 2 34 66699999999999999999999999999999999811001269999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. ......++.++|++|+...+...+.+ |+.++.............+.+.++++.+++....
T Consensus 93 ~---~~~~~~~~~i~~v~q~~~l~~~tv~e-----------ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 153 (276)
T PRK14271 93 Y---RDVLEFRRRVGMLFQRPNPFPMSIMD-----------NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV----- 153 (276)
T ss_pred c---chhHHHhhheEEeccCCccCCccHHH-----------HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-----
Confidence 0 01111233456777765443322444 4433221111112334455677888999986421
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+.+++.+.+|||||+||++||||| ||||++||. ++|||++|| +.+
T Consensus 154 --------~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 225 (276)
T PRK14271 154 --------KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQA 225 (276)
T ss_pred --------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1134778999999999999999999 999999873 689999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+|||+++ |++|++++.|++++++..+.++++..++.
T Consensus 226 ~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK14271 226 ARISDRAAL-FFDGRLVEEGPTEQLFSSPKHAETARYVA 263 (276)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 899999975 99999999999999988877766544433
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=287.26 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=150.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|++ . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 9 ~~~l~i~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 77 (265)
T PRK10575 9 DTTFALRNVSFRVPG-R--TL---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLES 77 (265)
T ss_pred CceEEEeeEEEEECC-E--EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehhh
Confidence 467999999999964 2 34 666999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc---CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .... .++.++|++|+...+..+ ++.+|+.++..... ........+++.++++.+++.+
T Consensus 78 ~---~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 139 (265)
T PRK10575 78 W---SSKA-FARKVAYLPQQLPAAEGM----------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP---- 139 (265)
T ss_pred C---CHHH-HhhheEEeccCCCCCCCc----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 1 0111 123456666664333222 33344443211000 0112234566888999999976
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 140 -------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH 206 (265)
T PRK10575 140 -------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206 (265)
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+.++||++++ |++|++++.|+++++..
T Consensus 207 ~~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 207 DINMAARYCDYLVA-LRGGEMIAQGTPAELMR 237 (265)
T ss_pred CHHHHHHhCCEEEE-EECCeEEEecCHHHhcC
Confidence 567789999975 99999999998877754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=284.75 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=145.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|+++.|+. . .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~~-~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGG-K--PA---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCC-e--ee---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 5899999999964 2 34 667999999999999999999999999999999999 999999999998741
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. ...++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ----~---~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 120 (255)
T PRK11248 68 ----P---GAERGVVFQNEGLLPWR----------NVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG--------- 120 (255)
T ss_pred ----C---CCcEEEEeCCCccCCCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 11246666664433222 3334443322111 1223445567889999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 121 --------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 121 --------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 789999999 578
Q ss_pred HhcccEEEEEee--CCeEeecCCcc
Q 019048 283 LSLTDRARIRTY--LGELLGIPPAK 305 (347)
Q Consensus 283 ~~~aDri~v~l~--~G~iv~~g~~~ 305 (347)
..+||++++ |+ +|++++.++.+
T Consensus 193 ~~~~d~i~~-l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 193 VFMATELVL-LSPGPGRVVERLPLN 216 (255)
T ss_pred HHhCCEEEE-EeCCCcEEEEEecCC
Confidence 899999975 98 59999987653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=323.77 Aligned_cols=228 Identities=13% Similarity=0.117 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhc-c------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRT-R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
..+....|+.++++.+++... . ....|+++||+|+|+.+.. .+ |+|+||+|++|+.+||+|+|||||||
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~sGsGKST 498 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPSGSGKST 498 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCCCCCHHH
Confidence 334556678887765433211 0 1235999999999964321 34 66699999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+|+|+|+++ |++|+|++||.++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 499 L~~ll~g~~~-----p~~G~I~idg~~i~---------------~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-- 556 (694)
T TIGR01846 499 LTKLLQRLYT-----PQHGQVLVDGVDLA---------------IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-- 556 (694)
T ss_pred HHHHHhcCCC-----CCCceEEECCEehh---------------hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--
Confidence 9999999999 99999999999986 2334444555566677777777788888875321
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
....+++.++++.+++.+.+...|+++.+.+++. ..+||||||||++||||| ||||++||
T Consensus 557 -----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~------g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 557 -----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK------GANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred -----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCC------CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 1124567778899999887777788888887765 458999999999999999 99999998
Q ss_pred C---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 270 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 270 ~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
. ++|+|+||| ......||++++ |++|++++.|++++++...
T Consensus 626 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~-l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 626 YESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIV-LEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEE-EeCCEEEEeCCHHHHHHcC
Confidence 4 799999999 445566999975 9999999999999998653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=285.84 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=159.1
Q ss_pred CcEEEeeeEEEeCCC------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 70 SLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
++|+++||++.|+.+ ....+ ++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~~g 73 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTV---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSWRG 73 (268)
T ss_pred ceEEEeceEEEecCCccccccCceee---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECC
Confidence 579999999999731 01235 666999999999999999999999999999999999 9999999999
Q ss_pred EeCCCCccccccccCCCccceeecccc-cc-ccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 144 SVGDGTYFLQEYTIPRGSNSFSLYDTR-SL-SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 144 ~~i~~~~~~~~~~~~r~~~~~~~~~~~-~~-~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
.++..... ......++.++|++|+.. .+ ... +.+++ .+................+.++++.+|+.
T Consensus 74 ~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 141 (268)
T PRK10419 74 EPLAKLNR-AQRKAFRRDIQMVFQDSISAVNPRKTVREII-----------REPLRHLLSLDKAERLARASEMLRAVDLD 141 (268)
T ss_pred EeccccCh-hHHHHHHhcEEEEEcChhhccCCCCCHHHHH-----------HHHHHhhccCCHHHHHHHHHHHHHHcCCC
Confidence 88741110 010112345677777752 12 111 33332 22111111122334455788999999997
Q ss_pred cccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ti 274 (347)
.. ..++.+.+|||||+||++||||| ||||++||. +.|+
T Consensus 142 ~~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti 205 (268)
T PRK10419 142 DS----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAC 205 (268)
T ss_pred hh----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEE
Confidence 42 35889999999999999999999 999999873 7899
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|++|| +.+..+||++++ |++|++++.|++++++. +.++++..++..
T Consensus 206 iivsH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 253 (268)
T PRK10419 206 LFITHDLRLVERFCQRVMV-MDNGQIVETQPVGDKLT-FSSPAGRVLQNA 253 (268)
T ss_pred EEEECCHHHHHHhCCEEEE-EECCEEeeeCChhhccC-CCCHHHHHHHHh
Confidence 99999 577789999975 99999999999999874 577777666543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=280.90 Aligned_cols=193 Identities=17% Similarity=0.249 Sum_probs=150.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++|+. . ..++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~---~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHH---L-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECC---c-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 4889999999963 2 335999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+... ++.+|+.++...... ......+++.++++.+|+++
T Consensus 66 ----~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--------- 121 (232)
T PRK10771 66 ----TPPSRRPVSMLFQENNLFSHL----------TVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIED--------- 121 (232)
T ss_pred ----CChhhccEEEEecccccccCC----------cHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHH---------
Confidence 111123456666664433322 344444433211001 12234567889999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++++.+|||||+||++||||+ ||||++||. |+|+|++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 122 --------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193 (232)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 45899999999999999999999 999999873 689999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
..+||++++ |++|++++.|++++++..+
T Consensus 194 ~~~~d~i~~-l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 194 ARIAPRSLV-VADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCh
Confidence 889999975 9999999999998887654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=283.37 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=159.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-----CCcEEEECC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNS 143 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-----~~G~I~~~g 143 (347)
.++|+++|+++.|+. ..+ |+++||+|++||+++|+|+||||||||+|+|+|+++ | ++|+|.++|
T Consensus 5 ~~~l~~~~l~~~~~~---~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~-----~~~~~~~~G~i~~~g 73 (259)
T PRK14260 5 IPAIKVKDLSFYYNT---SKA---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-----LEGPVKVEGVVDFFG 73 (259)
T ss_pred cceEEEEEEEEEECC---eEe---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cccCCccceEEEECC
Confidence 457999999999974 234 666999999999999999999999999999999987 5 489999999
Q ss_pred EeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 144 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 144 ~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
+++.... ......++.++|++|+...+. .++.+|+.++.......+.....+.+.++++.+++...+
T Consensus 74 ~~i~~~~--~~~~~~~~~i~~v~q~~~l~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 140 (259)
T PRK14260 74 QNIYDPR--ININRLRRQIGMVFQRPNPFP-----------MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV 140 (259)
T ss_pred Eeccccc--cchHhhhhheEEEecccccCC-----------ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh
Confidence 8874100 000111334667777654433 233344433322111112334456677889999885311
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 279 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH 279 (347)
....++++.+|||||+||++||||| ||||++||. ++|||++||
T Consensus 141 -------------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH 207 (259)
T PRK14260 141 -------------KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTH 207 (259)
T ss_pred -------------hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 1135788999999999999999999 999999883 689999999
Q ss_pred --hHHHhcccEEEEEee-----CCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 --GDLLSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 --~~~~~~aDri~v~l~-----~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+.+..+||++++ |+ +|++++.|++++++..+.++++..++
T Consensus 208 ~~~~i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14260 208 NMQQATRVSDFTAF-FSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYV 254 (259)
T ss_pred CHHHHHHhcCeEEE-EeccCCCCceEEEeCCHHHHhcCCCChHHHHhh
Confidence 688899999975 87 59999999999998887777766554
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=280.11 Aligned_cols=204 Identities=16% Similarity=0.194 Sum_probs=153.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~~i~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 1 PILYLEGLSVSFDG---FKA---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGL 69 (242)
T ss_pred CeEEEEeeEEEcCC---eEE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCC
Confidence 36899999999964 234 666999999999999999999999999999999999 9999999999876411
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
......++.++|++|+...+..+ +.+|+.+.... ...... ...........+++.++++.+|+++
T Consensus 70 ---~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~------- 135 (242)
T TIGR03411 70 ---PEHQIARAGIGRKFQKPTVFENLTVFENLELALPR--DKSVFA--SLFFRLSAEEKDRIEEVLETIGLAD------- 135 (242)
T ss_pred ---CHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc--cccccc--ccccccHHHHHHHHHHHHHHcCCch-------
Confidence 11111233467777776555543 55555432110 000000 0000112344567889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
..++.+.+|||||+||++||||| ||||++||. ++|||++|| +.+
T Consensus 136 ----------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 136 ----------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 45889999999999999999999 999999984 689999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
..+||++++ |++|++++.|++++++.
T Consensus 206 ~~~~d~i~~-l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 206 RSIADKVTV-LHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhCCEEEE-EECCeEEeeCCHHHHhc
Confidence 889999975 99999999999888764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=281.40 Aligned_cols=212 Identities=18% Similarity=0.239 Sum_probs=156.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-----CcEEEECCEe
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 145 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-----~G~I~~~g~~ 145 (347)
+|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQA---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-----LTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEeeeEEEECC---EEe---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceeEEECCEE
Confidence 6899999999974 235 666999999999999999999999999999999997 54 8999999988
Q ss_pred CCCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 146 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
+.... . .....++.++|++|+...+... +.+|+ .++.............+.+.++++.+++...+
T Consensus 73 ~~~~~-~-~~~~~~~~i~~~~q~~~~~~~~t~~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l- 138 (252)
T PRK14272 73 IYGPR-V-DPVAMRRRVGMVFQKPNPFPTMSVFDNV-----------VAGLKLAGIRDRDHLMEVAERSLRGAALWDEV- 138 (252)
T ss_pred cccCc-c-CHHHhhceeEEEeccCccCcCCCHHHHH-----------HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh-
Confidence 75100 0 0011233567777765444332 44444 32221111112234455667777777764311
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
....++++.+|||||+||++||||| ||||++||. ++|+|++||
T Consensus 139 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 206 (252)
T PRK14272 139 ------------KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206 (252)
T ss_pred ------------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0134788999999999999999999 999999873 699999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+.+..+||++++ |++|++++.|++++++..+.++.+..++
T Consensus 207 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14272 207 MHQAARVSDTTSF-FLVGDLVEHGPTDQLFTNPRDERTEAYV 247 (252)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 577889999975 9999999999999998887776655443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=276.62 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=140.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 67 (208)
T cd03268 1 LKTNDLTKTYGK-K--RV---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQKN-- 67 (208)
T ss_pred CEEEEEEEEECC-e--Ee---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccch--
Confidence 578999999964 2 34 666999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
...++.++|++|+...+... ++.+|+.++.... .. ..+++.++++.+++.+
T Consensus 68 ----~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~----~~~~~~~~l~~~~l~~---------- 118 (208)
T cd03268 68 ----IEALRRIGALIEAPGFYPNL----------TARENLRLLARLL-GI----RKKRIDEVLDVVGLKD---------- 118 (208)
T ss_pred ----HHHHhhEEEecCCCccCccC----------cHHHHHHHHHHhc-CC----cHHHHHHHHHHcCCHH----------
Confidence 11123456666654433222 3444444332211 11 1356778899999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 119 -------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred -------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEeeCCeEeecC
Q 019048 285 LTDRARIRTYLGELLGIP 302 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g 302 (347)
+||++++ |++|++++.|
T Consensus 192 ~~d~v~~-l~~g~i~~~g 208 (208)
T cd03268 192 VADRIGI-INKGKLIEEG 208 (208)
T ss_pred hcCEEEE-EECCEEEecC
Confidence 9999975 9999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=287.11 Aligned_cols=200 Identities=14% Similarity=0.183 Sum_probs=152.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+......+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAE 74 (277)
T ss_pred ceEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcC
Confidence 37999999999974322234 666999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
... ..++.++|++|+.. .+.. .++.+|+.++.... ........+++.++++.++|.+
T Consensus 75 ---~~~-~~~~~i~~v~q~~~~~~~~----------~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (277)
T PRK13642 75 ---NVW-NLRRKIGMVFQNPDNQFVG----------ATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD------- 132 (277)
T ss_pred ---CHH-HHhcceEEEEECHHHhhcc----------CCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh-------
Confidence 001 11334566666642 1211 24445554432211 1233445567889999999976
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+.++++.+|||||+||++||||| ||||++||. |.|||++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 133 ----------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
.+. .||++++ |++|++++.|++++++..+
T Consensus 203 ~~~-~~d~i~~-l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 203 EAA-SSDRILV-MKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHH-hCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 554 6999975 9999999999999887653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=274.17 Aligned_cols=182 Identities=14% Similarity=0.186 Sum_probs=143.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. . .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (210)
T cd03269 1 LEVENVTKRFGR-V--TA---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI--- 66 (210)
T ss_pred CEEEEEEEEECC-E--EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhH---
Confidence 578999999964 2 34 666999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
..++.++|++|+...+... +.+|+.+. ... .........+++.++++.+++++
T Consensus 67 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~-----------~~~-~~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 67 -----AARNRIGYLPEERGLYPKMKVIDQLVYL-----------AQL-KGLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred -----HHHccEEEeccCCcCCcCCcHHHHHHHH-----------HHH-cCCChHHHHHHHHHHHHHcCChH---------
Confidence 1133467777776544333 45544332 111 11223445567888999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45788999999999999999999 999999983 789999999 5677
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
.+||++++ |++|++++.|
T Consensus 193 ~~~d~i~~-l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVLL-LNKGRAVLYG 210 (210)
T ss_pred HhhhEEEE-EeCCEEEecC
Confidence 89999975 9999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=275.88 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=140.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-~ 68 (213)
T cd03262 1 IEIKNLHKSFGD-F--HV---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-K 68 (213)
T ss_pred CEEEEEEEEECC-e--Ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc-c
Confidence 578999999975 2 34 666999999999999999999999999999999999 9999999999987410 0
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
......++.++|++|+...+... +.+|+ .++.............+++.++++.+++++
T Consensus 69 -~~~~~~~~~i~~~~q~~~~~~~~t~~e~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 127 (213)
T cd03262 69 -KNINELRQKVGMVFQQFNLFPHLTVLENI-----------TLAPIKVKGMSKAEAEERALELLEKVGLAD--------- 127 (213)
T ss_pred -hhHHHHHhcceEEecccccCCCCcHHHHH-----------HhHHHHhcCCCHHHHHHHHHHHHHHcCCHh---------
Confidence 01111234567777765544332 44444 332111111223345567888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
.+++++.+|||||+||++||||| ||||++||. |+|||++|| +.+.
T Consensus 128 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 128 --------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred --------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5778
Q ss_pred hcccEEEEEeeCCeE
Q 019048 284 SLTDRARIRTYLGEL 298 (347)
Q Consensus 284 ~~aDri~v~l~~G~i 298 (347)
.+||++++ |++|++
T Consensus 200 ~~~d~i~~-l~~g~i 213 (213)
T cd03262 200 EVADRVIF-MDDGRI 213 (213)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999975 999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=283.89 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=149.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|++ . .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (255)
T PRK11231 2 TLRTENLTVGYGT-K--RI---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLS 70 (255)
T ss_pred EEEEEeEEEEECC-E--EE---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCC
Confidence 5899999999974 2 34 667999999999999999999999999999999999 99999999998764110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---ccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... .++.++|++|+...+..+ ++.+|+.++... ..........+++.++++.+++.+
T Consensus 71 ---~~~-~~~~i~~~~q~~~~~~~~----------tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 130 (255)
T PRK11231 71 ---SRQ-LARRLALLPQHHLTPEGI----------TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH------ 130 (255)
T ss_pred ---HHH-HhhheEEecccCCCCCCc----------cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH------
Confidence 001 122456777765433332 233443332100 001112334566788999999976
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+|||||+||++||||| ||||++||. |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 131 -----------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred -----------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45889999999999999999999 999999873 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+.++||++++ |++|+++..|++++++.
T Consensus 200 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 200 QASRYCDHLVV-LANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCEEEE-EECCeEEEEcCHHHhcC
Confidence 77899999975 99999999998877753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=287.33 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=159.4
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|++++|+. . .+ |+|+||+|++|++++|+||||||||||+++|+|+.+..+..|++|+|.++|+++.
T Consensus 36 ~~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-F--EA---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECC-E--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4568999999999964 2 34 6669999999999999999999999999999998531000028999999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... ......++.++|++|+...+. .++.+|+.++............++++.++++.+++...+
T Consensus 110 ~~~--~~~~~~~~~i~~v~q~~~l~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---- 172 (286)
T PRK14275 110 GKF--TDEVLLRKKIGMVFQKPNPFP-----------KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV---- 172 (286)
T ss_pred hcc--cchHHhhhcEEEECCCCCCCc-----------cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch----
Confidence 100 000112334667766654332 234445444322111112233456677888988875311
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 173 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 173 ---------SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ---------hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0135788999999999999999999 999999883 679999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||++++ |++|++++.|++++++..+.++.++.++.
T Consensus 244 ~~~~~d~i~~-L~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 282 (286)
T PRK14275 244 ASRVSDYTMF-FYEGVLVEHAPTAQLFTNPKDRMTEDYIT 282 (286)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHH
Confidence 7889999975 99999999999999988877776655543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=285.54 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=150.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+|+++||+++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTV---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQH 73 (265)
T ss_pred ccEEEEEEEEEEECC---EEE---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhh
Confidence 457999999999974 234 666999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc---CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .... .++.++|++|+...+... ++.+|+.++..... ........+++.++++.+++.+
T Consensus 74 ~---~~~~-~~~~i~~v~q~~~~~~~~----------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (265)
T PRK10253 74 Y---ASKE-VARRIGLLAQNATTPGDI----------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135 (265)
T ss_pred C---CHHH-HhhheEEeeccCcCCCCC----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 1 0001 122456777765443322 23334332210000 0011234456788999999976
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 136 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 136 -------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred -------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45889999999999999999999 999999873 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+..+||++++ |++|++++.|++++++.
T Consensus 203 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 203 DLNQACRYASHLIA-LREGKIVAQGAPKEIVT 233 (265)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHHHHhh
Confidence 578899999975 99999999999877654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=279.43 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=148.5
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc--cCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~--~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++||++.|+. ..+ |+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~~ 69 (243)
T TIGR01978 1 LKIKDLHVSVED---KEI---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLEL 69 (243)
T ss_pred CeEeeEEEEECC---EEE---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCCC
Confidence 578999999974 234 66699999999999999999999999999999994 6 8999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .....+..++|++|+...+... +.+++.+..... . ..............+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 135 (243)
T TIGR01978 70 E---PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR----R-SARGEEPLDLLDFLKLLKAKLALLGMDEE------ 135 (243)
T ss_pred C---HHHhhccceEeeeccccccCCcCHHHHHHHHHHHh----h-cccccccccHHHHHHHHHHHHHHcCCchh------
Confidence 1 1111122356777766544433 444443321100 0 00000001123345678889999999742
Q ss_pred eeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++.+. +||||||||++||||| ||||++||. |.|||++|| +
T Consensus 136 ----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 136 ----------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred ----------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 2466776 5999999999999999 999999983 789999999 5
Q ss_pred HHHhc-ccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 281 DLLSL-TDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 281 ~~~~~-aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
.+..+ ||++++ |++|++++.|+++++.....+.+
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 240 (243)
T TIGR01978 206 LLNYIKPDYVHV-LLDGRIVKSGDVELAKELEEKGY 240 (243)
T ss_pred HHHhhcCCeEEE-EeCCEEEEecCHHHhccccccCc
Confidence 67777 899975 99999999999876554333333
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=283.34 Aligned_cols=216 Identities=15% Similarity=0.174 Sum_probs=156.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 9 ~~l~i~~v~~~~~~---~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLA---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---EEE---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 57999999999964 234 666999999999999999999999999999999986111012789999999887410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . .....++.++|++|+.. ++..++.+|+.++..... . .....+++.++++.+++...+
T Consensus 83 ~-~-~~~~~~~~i~~v~q~~~-----------~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l------ 141 (264)
T PRK14243 83 D-V-DPVEVRRRIGMVFQKPN-----------PFPKSIYDNIAYGARING-Y-KGDMDELVERSLRQAALWDEV------ 141 (264)
T ss_pred c-c-ChHHHhhhEEEEccCCc-----------cccccHHHHHHhhhhhcC-c-chHHHHHHHHHHHHhCchhhH------
Confidence 0 0 00111234556655543 222345556554432111 1 122345566778888875321
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
....++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 142 -------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 142 -------KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214 (264)
T ss_pred -------HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 1135788999999999999999999 999999873 689999999 5789
Q ss_pred hcccEEEEEee---------CCeEeecCCcccccCCCCCCChHHHH
Q 019048 284 SLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 284 ~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.+|||+++ |+ +|++++.|++++++..+.+++++.++
T Consensus 215 ~~~d~v~~-l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 259 (264)
T PRK14243 215 RVSDMTAF-FNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259 (264)
T ss_pred HhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence 99999975 88 89999999999999988877765544
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=281.55 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=156.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC----CCcEEEECCEeC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 146 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p----~~G~I~~~g~~i 146 (347)
+|+++|++++| + . .+ |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~-~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-A-Q--PL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-c-c--ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 68999999999 3 2 24 666999999999999999999999999999999998 8 999999999987
Q ss_pred CCCccccccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .....++.++|++|+... +... .++.+++....... ... ...+++.++++.+++.+..
T Consensus 72 ~------~~~~~~~~i~~v~q~~~~~~~~~---------~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~-- 131 (254)
T PRK10418 72 A------PCALRGRKIATIMQNPRSAFNPL---------HTMHTHARETCLAL-GKP--ADDATLTAALEAVGLENAA-- 131 (254)
T ss_pred c------ccccccceEEEEecCCccccCcc---------ccHHHHHHHHHHHc-CCC--hHHHHHHHHHHHcCCCChh--
Confidence 4 112223456788887532 2110 01222222211111 111 1236688899999997520
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
+++++.+.+|||||+||++||||| ||||++||. |.|||++||
T Consensus 132 ------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 132 ------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred ------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 135788999999999999999999 999999873 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+.+..+||++++ |++|++++.|++++++..+.+++.+.++..
T Consensus 200 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 243 (254)
T PRK10418 200 DMGVVARLADDVAV-MSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243 (254)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEecCHHHHhhCCCCHHHHHHHHh
Confidence 567789999975 999999999999999888776665555543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=281.56 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=156.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|+++.|+.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++....++.+|+|.++|+++...
T Consensus 6 ~~l~~~nl~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KI---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCCe---eE---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 479999999999642 34 666999999999999999999999999999999998111111389999999886310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ......++.++|++|+...+. .++.+|+.++.............+++.++++.+++.+.+
T Consensus 80 ~--~~~~~~~~~i~~~~q~~~l~~-----------~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 140 (261)
T PRK14258 80 R--VNLNRLRRQVSMVHPKPNLFP-----------MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI------ 140 (261)
T ss_pred c--cchHHhhccEEEEecCCccCc-----------ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh------
Confidence 0 000111334566666544332 234444443321111112233456678899999885421
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
....++.+.+|||||+||++||||| ||||++||. +.|||++|| ..
T Consensus 141 -------~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~ 213 (261)
T PRK14258 141 -------KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ 213 (261)
T ss_pred -------hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 0135788899999999999999999 999999873 789999999 57
Q ss_pred HHhcccEEEEEeeC-----CeEeecCCcccccCCCCCCChHHH
Q 019048 282 LLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 282 ~~~~aDri~v~l~~-----G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+.++||++++ |++ |++++.|++++++..|.++.+..+
T Consensus 214 i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~ 255 (261)
T PRK14258 214 VSRLSDFTAF-FKGNENRIGQLVEFGLTKKIFNSPHDSRTREY 255 (261)
T ss_pred HHHhcCEEEE-EccCCCcCceEEEeCCHHHHHhCCCCHHHHHH
Confidence 8899999975 999 999999999999988777665443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=279.51 Aligned_cols=217 Identities=16% Similarity=0.198 Sum_probs=155.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|+. ..+ |+++||+|.+||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGK---FEA---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECC---eeE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 357999999999974 234 66699999999999999999999999999999986411000258999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+...+.+|+ .++.............+++.++++.+++...+
T Consensus 77 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~nl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 138 (252)
T PRK14255 77 P--NEDVVQLRKQVGMVFQQPNPFPFSIYENV-----------IYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV----- 138 (252)
T ss_pred c--cccHHHhcCeEEEEECCCccCCCcHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-----
Confidence 0 00111123356777776544332244443 33221111111223345667778888775311
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
....++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 139 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 139 --------KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred --------hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 1135788999999999999999999 999999984 689999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
..+||++++ |++|++++.|++.+++.++.+.+.+.
T Consensus 211 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 245 (252)
T PRK14255 211 SRISDKTAF-FLTGNLIEFADTKQMFLNPKEKETED 245 (252)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCChHHHH
Confidence 889999975 99999999999999998887665443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=274.76 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=140.0
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++||++.|+.+. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL 72 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 478999999996421 1234 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+...+..+ ++.+|+.++... .........+++.++++.+|+++
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-------- 133 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDF----------TALENVAMPLLI-GKKSVKEAKERAYEMLEKVGLEH-------- 133 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCC----------cHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChh--------
Confidence 10000001123456777765443332 333443332211 11222344567788999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 134 ---------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 134 ---------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999873 689999999 45
Q ss_pred HHhcccEEEEEeeCCeEe
Q 019048 282 LLSLTDRARIRTYLGELL 299 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv 299 (347)
+ ..+|++++ |++|+++
T Consensus 205 ~-~~~d~v~~-l~~G~i~ 220 (221)
T TIGR02211 205 A-KKLDRVLE-MKDGQLF 220 (221)
T ss_pred H-hhcCEEEE-EeCCEec
Confidence 5 45899975 9999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=292.14 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=142.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.++... . ...++.++|++|+...+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~----~-~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVRE----P-RKVRRSIGIVPQYASVD 78 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccC----H-HHHHhhcEEecCCCCCC
Confidence 666999999999999999999999999999999999 9999999999987510 0 11133567777776554
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHH
Q 019048 173 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (347)
Q Consensus 173 ~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGq 251 (347)
..+ +.+|+.+.. .. .........+++.++++.++|.+ ..++++.+|||||
T Consensus 79 ~~~tv~e~l~~~~-----------~~-~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 129 (302)
T TIGR01188 79 EDLTGRENLEMMG-----------RL-YGLPKDEAEERAEELLELFELGE-----------------AADRPVGTYSGGM 129 (302)
T ss_pred CCCcHHHHHHHHH-----------HH-cCCCHHHHHHHHHHHHHHcCChh-----------------HhCCchhhCCHHH
Confidence 443 555543321 11 12223455667889999999987 4588999999999
Q ss_pred HHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 252 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 252 rQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
|||++||||| ||||++||. |+|||++|| +++..+||++++ |++|+++..|++
T Consensus 130 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~-l~~G~i~~~g~~ 208 (302)
T TIGR01188 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAI-IDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEECCH
Confidence 9999999999 999999984 799999999 678899999975 999999999999
Q ss_pred ccccCC
Q 019048 305 KQIFDI 310 (347)
Q Consensus 305 ~~l~~~ 310 (347)
+++...
T Consensus 209 ~~l~~~ 214 (302)
T TIGR01188 209 EELKRR 214 (302)
T ss_pred HHHHHh
Confidence 887643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=314.49 Aligned_cols=226 Identities=13% Similarity=0.119 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk 121 (347)
+....|+.++++.+++.... ....|+++|++|+|+.++ ..+ |+++||+|++|++++|+||||||||||++
T Consensus 284 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~-~~~---l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ 359 (569)
T PRK10789 284 SAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTD-HPA---LENVNFTLKPGQMLGICGPTGSGKSTLLS 359 (569)
T ss_pred HHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCC-Ccc---ccCeeEEECCCCEEEEECCCCCCHHHHHH
Confidence 34556777777554331110 123599999999997532 234 66699999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC
Q 019048 122 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 201 (347)
Q Consensus 122 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~ 201 (347)
+|+|+++ |++|+|.++|+++. .+...+.+...++++|++.++..++.+|+.++.. .
T Consensus 360 ll~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~---~- 415 (569)
T PRK10789 360 LIQRHFD-----VSEGDIRFHDIPLT---------------KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP---D- 415 (569)
T ss_pred HHhcccC-----CCCCEEEECCEEHh---------------hCCHHHHHhheEEEccCCeeccccHHHHHhcCCC---C-
Confidence 9999999 99999999999875 1222333334445556666666677777765422 1
Q ss_pred ChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC--
Q 019048 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 270 (347)
Q Consensus 202 ~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 270 (347)
...+++.++++.+++.+.+...|+++.+.+++. ...||||||||++||||| ||||++||.
T Consensus 416 ---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~------g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 416 ---ATQQEIEHVARLASVHDDILRLPQGYDTEVGER------GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 123456677888888876667778887777665 457999999999999999 999999984
Q ss_pred -------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 271 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 271 -------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
++|+|+||| ......||++++ |++|++++.|++++++...
T Consensus 487 ~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 487 EHQILHNLRQWGEGRTVIISAHRLSALTEASEILV-MQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEE-EeCCEEEEecCHHHHHHcC
Confidence 799999999 455567999965 9999999999999988653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=283.26 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=148.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|+++.|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~- 69 (258)
T PRK13548 2 MLEARNLSVRLGG-R--TL---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADW- 69 (258)
T ss_pred eEEEEeEEEEeCC-e--ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccC-
Confidence 6899999999974 2 34 666999999999999999999999999999999999 9999999999886411
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.... .++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 --~~~~-~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 126 (258)
T PRK13548 70 --SPAE-LARRRAVLPQHSSLSFPF----------TVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAH--------- 126 (258)
T ss_pred --CHHH-hhhheEEEccCCcCCCCC----------CHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHh---------
Confidence 0000 122456666654332221 3444444332111 1112334456788999999986
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC-----------------CCeEEEEe
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVVT 278 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 127 --------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 127 --------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45889999999999999999986 999999873 68999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 199 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 199 HDLNLAARYADRIVL-LHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCHHHHHHhcCEEEE-EECCEEEeeCCHHHHhC
Confidence 9 567789999975 99999999998877754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=274.80 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=136.6
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
+++|+++.|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~~-~~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~--- 68 (211)
T cd03225 1 ELKNLSFSYPDGA-RPA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKL--- 68 (211)
T ss_pred CceeEEEecCCCC-eee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccC---
Confidence 4789999996421 134 666999999999999999999999999999999999 9999999999887411
Q ss_pred cccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 153 QEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~-~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. ....++.++|++|+... +... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ~-~~~~~~~i~~~~q~~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 126 (211)
T cd03225 69 S-LKELRRKVGLVFQNPDDQFFGP----------TVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG---------- 126 (211)
T ss_pred C-HHHHHhhceEEecChhhhcCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh----------
Confidence 0 01112345666666421 2111 3334443322111 1123344567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| ..+..
T Consensus 127 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 127 -------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred -------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45889999999999999999999 999999984 789999999 57788
Q ss_pred cccEEEEEeeCCe
Q 019048 285 LTDRARIRTYLGE 297 (347)
Q Consensus 285 ~aDri~v~l~~G~ 297 (347)
+||++++ |++|+
T Consensus 200 ~~d~i~~-l~~G~ 211 (211)
T cd03225 200 LADRVIV-LEDGK 211 (211)
T ss_pred hCCEEEE-EeCCC
Confidence 8999975 98884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=314.34 Aligned_cols=227 Identities=11% Similarity=0.128 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhhhhhhh-----c-c---CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 47 QRRRDAVFREVLQSYDQLR-----T-R---IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~-----~-~---~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
.+....|+.++++.+++.. . . ....|+++||+|+|+.+....+ |+|+||+|++||.++|+|+||||||
T Consensus 304 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG~sGsGKS 380 (576)
T TIGR02204 304 AAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVGPSGAGKS 380 (576)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEECCCCCCHH
Confidence 3445567777765433211 0 0 1134999999999964321234 6669999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+|+|+|+++ |++|+|.+||.++. .+...+.+...++++|++.++..++.+|+.++..
T Consensus 381 TLlklL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~- 439 (576)
T TIGR02204 381 TLFQLLLRFYD-----PQSGRILLDGVDLR---------------QLDPAELRARMALVPQDPVLFAASVMENIRYGRP- 439 (576)
T ss_pred HHHHHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHHhceEEccCCccccccHHHHHhcCCC-
Confidence 99999999999 99999999999886 2233334444555666666666677777765432
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
. ...+++.++++.+++.+.+...++++.+.|.+. ...||||||||++||||+ ||||++|
T Consensus 440 --~----~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~------g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l 507 (576)
T TIGR02204 440 --D----ATDEEVEAAARAAHAHEFISALPEGYDTYLGER------GVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507 (576)
T ss_pred --C----CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCC------CCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc
Confidence 1 123567788999998776666677777766654 457999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+ ++|+|+||| ......||++++ |++|++++.|++++++..
T Consensus 508 D~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~-l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 508 DAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV-MDQGRIVAQGTHAELIAK 564 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE-EECCEEEeeecHHHHHHc
Confidence 84 799999999 566678999964 999999999999887653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=268.13 Aligned_cols=189 Identities=17% Similarity=0.230 Sum_probs=159.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++++.+.+++.+|+... ..+ |+|+|++|.+||+++++||||||||||+|+++|+.+ |..|+|.++|+.++.
T Consensus 1 M~~l~~~~~sl~y~g~~-~~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g 71 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP-RSA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG 71 (259)
T ss_pred CceeehhheEEecCCcc-hhh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC
Confidence 35688999999997533 345 555999999999999999999999999999999999 999999999998861
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
+..-.+.||||..+++. ++.+|+++|+.. ++.++....+.+.+++..+||++
T Consensus 72 --------------------PgaergvVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~------ 124 (259)
T COG4525 72 --------------------PGAERGVVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEG------ 124 (259)
T ss_pred --------------------CCccceeEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCccc------
Confidence 11123446777777777 888999999884 46677888889999999999998
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||+.||||| |||+++||. |+.+++|||
T Consensus 125 -----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 125 -----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred -----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 44899999999999999999999 999999873 999999999
Q ss_pred hHHHhcccEEEEEee--CCeEeecCCcc
Q 019048 280 GDLLSLTDRARIRTY--LGELLGIPPAK 305 (347)
Q Consensus 280 ~~~~~~aDri~v~l~--~G~iv~~g~~~ 305 (347)
+++.-+|+|++| |. .|++++.-+++
T Consensus 194 eEAlflatrLvv-lsp~pgRvv~~~~~d 220 (259)
T COG4525 194 EEALFLATRLVV-LSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHhhhheeEE-ecCCCceeeEecCCC
Confidence 688899999965 87 47888876653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=292.68 Aligned_cols=196 Identities=15% Similarity=0.226 Sum_probs=151.6
Q ss_pred eeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccccc
Q 019048 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 155 (347)
Q Consensus 76 nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~ 155 (347)
||+++|+. .. + ++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 4 ~l~~~~~~--~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~~~~ 70 (354)
T TIGR02142 4 RFSKRLGD--FS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKGIFL 70 (354)
T ss_pred EEEEEECC--EE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCcccccc
Confidence 89999964 12 4 5999999999999999999999999999999999 9999999999987411000001
Q ss_pred ccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeec
Q 019048 156 TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVD 235 (347)
Q Consensus 156 ~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd 235 (347)
...++.++|++|+...+..+ ++.+|+.++... .......+++.++++.++|.+
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~---~~~~~~~~~~~~~l~~~gL~~-------------- 123 (354)
T TIGR02142 71 PPEKRRIGYVFQEARLFPHL----------SVRGNLRYGMKR---ARPSERRISFERVIELLGIGH-------------- 123 (354)
T ss_pred chhhCCeEEEecCCccCCCC----------cHHHHHHHHhhc---cChhHHHHHHHHHHHHcCChh--------------
Confidence 11233456666665444332 344454443321 112334566889999999987
Q ss_pred hhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhccc
Q 019048 236 GLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTD 287 (347)
Q Consensus 236 ~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aD 287 (347)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +.+..+||
T Consensus 124 ---~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 124 ---LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred ---HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 56899999999999999999999 999999873 789999999 57888999
Q ss_pred EEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 288 RARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 288 ri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
++++ |++|+++..|++++++..+..++
T Consensus 201 ~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 201 RVVV-LEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EEEE-EeCCEEEEECCHHHHhcCcCccc
Confidence 9975 99999999999999998877654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=274.75 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=144.0
Q ss_pred CCcEEEeeeEEEeCCCce-eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~-~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++|+++|++++|+.+.. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 367999999999964321 134 666999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
...........++.++|++|+...+... +.+|+ .++.... .......++++.++++.+++.+
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 138 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV-----------ELPALLR-GESSRQSRNGAKALLEQLGLGK----- 138 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH-----------HHHHHhc-CCCHHHHHHHHHHHHHHcCCHh-----
Confidence 2110000011123466777765443332 44443 3221111 1223445677889999999986
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 139 ------------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 139 ------------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred ------------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888999999999999999999 999999873 689999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeec
Q 019048 280 -GDLLSLTDRARIRTYLGELLGI 301 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~ 301 (347)
+.+ ..||++++ |++|++++.
T Consensus 207 ~~~~-~~~d~i~~-l~~g~i~~~ 227 (228)
T PRK10584 207 LQLA-ARCDRRLR-LVNGQLQEE 227 (228)
T ss_pred HHHH-HhCCEEEE-EECCEEEec
Confidence 344 56999975 999998754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=342.13 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=175.2
Q ss_pred HHHHHHHHHHhhhhhhhc------c-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 49 RRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
...+|+.++++.+++... + ....|+++||+|+|..+.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEECCCCCCHH
Confidence 345577777654433110 0 1135999999999954321 34 6669999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.|+. .+...+.|...++|+|++.++..++.+|+..+.
T Consensus 1277 TL~~lL~rl~~-----p~~G~I~IdG~di~---------------~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-- 1334 (1495)
T PLN03232 1277 SMLNALFRIVE-----LEKGRIMIDDCDVA---------------KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-- 1334 (1495)
T ss_pred HHHHHHhCCCc-----CCCceEEECCEEhh---------------hCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--
Confidence 99999999999 99999999999986 233344444455555555555556666665321
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
....+++.++++.+++.+.+..+|+++.+.|++.+ .+||||||||++||||| |||||+|
T Consensus 1335 ------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G------~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1335 ------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG------ENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC------CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 11235678889999998877778888888887763 47999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
|. ++|+|+||| -.....||||++ |++|++++.|+|++++.++...+
T Consensus 1403 D~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV-L~~G~ivE~Gt~~eLl~~~~~~f 1464 (1495)
T PLN03232 1403 DVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV-LSSGQVLEYDSPQELLSRDTSAF 1464 (1495)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHH
Confidence 83 799999999 345556999975 99999999999999998755334
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=273.01 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=140.9
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. . ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~---~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~~-- 65 (211)
T cd03298 1 VRLDKIRFSYGE---Q-----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTAA-- 65 (211)
T ss_pred CEEEeEEEEeCC---E-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCcC--
Confidence 478999999964 2 125999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
...++.++|++|+...+... ++.+|+.++...... .....++++.++++.+++.+
T Consensus 66 ----~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---------- 120 (211)
T cd03298 66 ----PPADRPVSMLFQENNLFAHL----------TVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG---------- 120 (211)
T ss_pred ----CHhHccEEEEecccccCCCC----------cHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH----------
Confidence 11123456777765443322 344444433211001 11234567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 121 -------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred -------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5778
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
.+||++++ |++|++++.|
T Consensus 194 ~~~d~i~~-l~~G~i~~~~ 211 (211)
T cd03298 194 RLAQRVVF-LDNGRIAAQG 211 (211)
T ss_pred hhhCEEEE-EECCEEeecC
Confidence 89999975 9999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=283.34 Aligned_cols=219 Identities=15% Similarity=0.185 Sum_probs=158.0
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~---~~~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG---FLA---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCC---eEE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 3468999999999974 234 6669999999999999999999999999999999861100025899999998874
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
... . .....++.++|++|+...+ ..++.+|+.++.... .. .....+.+.++++.+++...+
T Consensus 91 ~~~-~-~~~~~~~~i~~v~q~~~l~-----------~~tv~~nl~~~~~~~-~~-~~~~~~~~~~~l~~~~l~~~l---- 151 (274)
T PRK14265 91 DSQ-I-NSVKLRRQVGMVFQRPNPF-----------PKSIYENIAFAPRAN-GY-KGNLDELVEDSLRRAAIWEEV---- 151 (274)
T ss_pred ccc-c-hhHHHhhcEEEEccCCccc-----------cccHHHHHHhHHHhc-Cc-hHHHHHHHHHHHHHcccchhh----
Confidence 100 0 0111133456666654332 223445554432211 11 112334566778888875321
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
...+++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 152 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 152 ---------KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred ---------HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 1135788999999999999999999 999999873 689999999 57
Q ss_pred HHhcccEEEEEee---------CCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+.++||++++ |+ +|++++.|++++++..+.++.++.++.
T Consensus 223 ~~~~~d~i~~-l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (274)
T PRK14265 223 ASRVADWTAF-FNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYIS 270 (274)
T ss_pred HHHhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCCHHHHHHhh
Confidence 8899999975 87 899999999999998888777665543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=275.84 Aligned_cols=203 Identities=17% Similarity=0.233 Sum_probs=158.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.. .+ |+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGSF---QA---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECCe---ee---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 5799999999742 34 667999999999999999999999999999999999 999999999988751
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++++...+..+ +.+|+ .+..... ........+.+.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~t~~enl-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (237)
T TIGR00968 67 ---VHARDRKIGFVFQHYALFKHLTVRDNI-----------AFGLEIR-KHPKAKIKARVEELLELVQLEG--------- 122 (237)
T ss_pred ---CChhhcCEEEEecChhhccCCcHHHHH-----------HhHHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 111233566777665444332 44444 3222111 1122334466788999999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+.++.+.+||+||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 123 --------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999873 689999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.++||++++ |++|++++.|++++++..+.++++..++.
T Consensus 195 ~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 195 MEVADRIVV-MSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred HhhcCEEEE-EECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 899999975 99999999999999988777676655543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=310.10 Aligned_cols=215 Identities=12% Similarity=0.168 Sum_probs=160.2
Q ss_pred CCcEEEeeeEEEeCCC--------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 69 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
.++|+++|+++.|+.+ ....+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i~ 343 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIW 343 (529)
T ss_pred CCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEEE
Confidence 4689999999999521 01235 566999999999999999999999999999999974 689999
Q ss_pred ECCEeCCCCccccccccCCCccceeecccc--ccccchhhhhHhhHHHHHhhhhhhhhhcc-CCChHHHHHHHHHHHHHC
Q 019048 141 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKI 217 (347)
Q Consensus 141 ~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~v~qn~~~~~~~v~~~v~~~~~~~~-~~~~~~~~~~i~~~l~~~ 217 (347)
++|+++..... ......++.++|++|+.. .+... ++.+|+.++..... ..+....++++.++++.+
T Consensus 344 ~~g~~i~~~~~-~~~~~~~~~i~~v~q~~~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (529)
T PRK15134 344 FDGQPLHNLNR-RQLLPVRHRIQVVFQDPNSSLNPRL----------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412 (529)
T ss_pred ECCEEccccch-hhHHHhhhceEEEEeCchhhcCCcc----------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHc
Confidence 99998751100 000011234677777642 22221 34444444322111 122344556788999999
Q ss_pred CCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------C
Q 019048 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 271 (347)
Q Consensus 218 gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 271 (347)
++.+. ..++++.+||||||||++||||| ||||++||. |
T Consensus 413 ~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 476 (529)
T PRK15134 413 GLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476 (529)
T ss_pred CCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC
Confidence 99732 35889999999999999999999 999999873 7
Q ss_pred CeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 272 ~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+|||+||| +.+..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 477 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 477 LAYLFISHDLHVVRALCHQVIV-LRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CEEEEEeCCHHHHHHhcCeEEE-EECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 89999999 578889999975 9999999999999999888888766554
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=273.27 Aligned_cols=184 Identities=15% Similarity=0.229 Sum_probs=142.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
++++||++.|+. . ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 3 567999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~v~q~~~~~~~~----------t~~en~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 120 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNLFAHL----------TVRQNIGLGLHPG-LKLNAEQQEKVVDAAQQVGIAD---------- 120 (213)
T ss_pred ---CChhccceEEEeccCccCCCC----------cHHHHHHhHhhcc-CCccHHHHHHHHHHHHHcCcHH----------
Confidence 111233456776665443322 3444443322111 0111223556788999999976
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 121 -------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred -------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5678
Q ss_pred hcccEEEEEeeCCeEeecCC
Q 019048 284 SLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~ 303 (347)
.+||++++ |++|++++.|.
T Consensus 194 ~~~d~v~~-l~~g~i~~~~~ 212 (213)
T TIGR01277 194 AIASQIAV-VSQGKIKVVSD 212 (213)
T ss_pred hhcCeEEE-EECCeEEEecC
Confidence 89999975 99999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=274.89 Aligned_cols=196 Identities=17% Similarity=0.278 Sum_probs=152.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~-~-~-----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKE-F-K-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCC-c-e-----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 578999999964 2 3 677999999999999999999999999999999999 999999999998752
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.+++++|+...+... ++.+|+.++... ......+..+++.++++.++|.+
T Consensus 66 ---~~~~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---------- 121 (235)
T cd03299 66 ---LPPEKRDISYVPQNYALFPHM----------TVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDH---------- 121 (235)
T ss_pred ---CChhHcCEEEEeecCccCCCc----------cHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChh----------
Confidence 111234567777765444322 233343332211 11223445567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+.
T Consensus 122 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 122 -------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred -------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5678
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 314 (347)
.+||++++ |++|++++.|+++++...+..+
T Consensus 195 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~ 224 (235)
T cd03299 195 ALADKVAI-MLNGKLIQVGKPEEVFKKPKNE 224 (235)
T ss_pred HhCCEEEE-EECCEEEEecCHHHHHhCcccH
Confidence 89999975 9999999999988887665433
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=271.13 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=157.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+.+|++++..++ ++ |+++||++++||++||+||||||||||+|.|+|-+. |++|++.++|.++.
T Consensus 1 mi~a~nls~~~~Gr---~l---l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~--- 66 (259)
T COG4559 1 MIRAENLSYSLAGR---RL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLN--- 66 (259)
T ss_pred CeeeeeeEEEeecc---ee---ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChh---
Confidence 58999999998652 34 566999999999999999999999999999999999 99999999999876
Q ss_pred cccccccCCCccceeeccccccccchhhhhHh-hHHHHHhhhhhhhhhccCC-ChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~-~~~~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+.+.+........+|+..+ |+.++.+-|.+|...++.. ...+..+.+.++|...++..
T Consensus 67 ------------~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~------- 127 (259)
T COG4559 67 ------------SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG------- 127 (259)
T ss_pred ------------hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-------
Confidence 23333333333334444433 3446777777776655332 22344555778899999988
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC----------------CCeEEEE
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tiIii 277 (347)
+..+...+|||||||||.+||+| |||||+||- |..|+.|
T Consensus 128 ----------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~V 197 (259)
T COG4559 128 ----------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197 (259)
T ss_pred ----------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 66888899999999999999999 999999872 8899999
Q ss_pred ec--hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 278 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
-| +.++.|||||++ |++|+++..|+|++++..
T Consensus 198 LHDLNLAA~YaDrivl-l~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 198 LHDLNLAAQYADRIVL-LHQGRVIASGSPQDVLTD 231 (259)
T ss_pred EccchHHHHhhheeee-eeCCeEeecCCHHHhcCH
Confidence 99 789999999965 999999999999998764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=301.68 Aligned_cols=192 Identities=17% Similarity=0.285 Sum_probs=159.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|++|+|+. +++|++ |||++.+||++||+|+||||||||+|+|+|.++ |++|+|+++|+....
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~---v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~ 74 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDG---VSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAF 74 (500)
T ss_pred cceeeeecceEEcCC---ceeecc---ceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccC
Confidence 468999999999986 677555 999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeecccccc-ccchhhhhHhhHH-HHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSL-SDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~-~~~v~qn~~~~~~-~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
..+.+.... +.+|+|++.++++ +|.+|+.++.... ...+.....+++.++|+.+++...
T Consensus 75 ---------------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~- 138 (500)
T COG1129 75 ---------------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID- 138 (500)
T ss_pred ---------------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-
Confidence 122222222 2336666776666 7778887776543 235778889999999999998631
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiT 278 (347)
.+.+..+||.||||.|+||||| ||||++|.. |.++|+||
T Consensus 139 ----------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~IS 202 (500)
T COG1129 139 ----------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS 202 (500)
T ss_pred ----------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 2778999999999999999999 999999852 99999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
| +++.++|||+.| |.+|+.+...+.
T Consensus 203 Hrl~Ei~~i~DritV-lRDG~~v~~~~~ 229 (500)
T COG1129 203 HRLDEVFEIADRITV-LRDGRVVGTRPT 229 (500)
T ss_pred CcHHHHHHhcCEEEE-EeCCEEeeeccc
Confidence 9 899999999976 999999998873
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=281.96 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=148.2
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 l~~~~l~~~~~~-~--~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 69 (256)
T TIGR03873 2 LRLSRVSWSAGG-R--LI---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLS- 69 (256)
T ss_pred ceEEeEEEEECC-E--EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCC-
Confidence 689999999974 2 34 666999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. ...++.++|++|+...+... +.+|+.+.... .............+++.++++.+++.+
T Consensus 70 --~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 129 (256)
T TIGR03873 70 --R-RARARRVALVEQDSDTAVPLTVRDVVALGRIP--------HRSLWAGDSPHDAAVVDRALARTELSH--------- 129 (256)
T ss_pred --H-HHHhhheEEecccCccCCCCCHHHHHHhcchh--------hhhhccCCCHHHHHHHHHHHHHcCcHh---------
Confidence 0 01122456777665332222 44444331100 000001112233456788999999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
+.++++.+|||||+||++||||| ||||++||. +.|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 130 --------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred --------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999873 789999999 5777
Q ss_pred hcccEEEEEeeCCeEeecCCcccccC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+||++++ |++|++++.|++++++.
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 202 SYCDHVVV-LDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhCCEEEE-EeCCCEEEecCHHHhhC
Confidence 89999975 99999999998877643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=307.12 Aligned_cols=222 Identities=12% Similarity=0.128 Sum_probs=158.0
Q ss_pred CCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.++|+++|++++|+.+ ....+ |+++||+|++||++||+||||||||||+|+|+|+++.....|++|+|.++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3589999999999632 11245 5669999999999999999999999999999999981101127999999999875
Q ss_pred CCccccccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~-~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
...........++.++|++|+... +.. ..++.+++.+........+.....+++.++++.+||.+..
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--- 147 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNP---------LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--- 147 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCc---------hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---
Confidence 111000001122356777776421 111 0123333332211111223445667889999999997510
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
..+++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 148 -----------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 148 -----------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred -----------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 024889999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 317 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 317 (347)
+.+..+||||++ |++|++++.|++++++..+.+..++
T Consensus 217 ~~~~~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~ 254 (529)
T PRK15134 217 LSIVRKLADRVAV-MQNGRCVEQNRAATLFSAPTHPYTQ 254 (529)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCHHHHhhCCCCHHHH
Confidence 578889999975 9999999999999988766544433
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=312.17 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHhhhhhhhc-----c-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 48 RRRDAVFREVLQSYDQLRT-----R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
+....|+.++++.+++... . ....|+++||+|+|++++. + |+|+||+|++|+.+||+||||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~--v---L~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 301 RAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPP--V---LDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCc--e---eecceEEEcCCCEEEEECCCCCCHH
Confidence 4455677777755432110 0 1124999999999975443 4 6679999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+|+|+|+++ |++|+|.+||.++. .+ ..+.+...++|+|++.++..++.+|+.++..
T Consensus 376 TLl~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~- 433 (529)
T TIGR02868 376 TLLMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP- 433 (529)
T ss_pred HHHHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHHHHhccCC-
Confidence 99999999999 99999999999987 35 5566666777788888888888888876532
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
...++++.++++.+++++.+..+|+++.+.|++.+ ..||||||||++||||| |||||+|
T Consensus 434 ------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G------~~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 434 ------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGG------ARLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc------CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 12345678899999999888888999999988764 37999999999999999 9999999
Q ss_pred CC---------------CCeEEEEech
Q 019048 269 RD---------------DKPVVVVTHG 280 (347)
Q Consensus 269 d~---------------g~tiIiiTH~ 280 (347)
|. ++|+|+|||+
T Consensus 502 D~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 502 DAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 83 7999999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=280.76 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=158.0
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|++++|+. ..+ |+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.-..
T Consensus 7 ~~~~i~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~ 75 (257)
T PRK14246 7 AEDVFNISRLYLYIND---KAI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLY 75 (257)
T ss_pred hhhheeeeeEEEecCC---cee---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEE
Confidence 3578999999999975 234 666999999999999999999999999999999999 99987777764211
Q ss_pred CCccccccc--cCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 148 GTYFLQEYT--IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 148 ~~~~~~~~~--~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
......... ..++.++|++|+...+.+. ++.+|+.++..........+.++++.++++.+++.+.+
T Consensus 76 ~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 143 (257)
T PRK14246 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHL----------SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-- 143 (257)
T ss_pred CCcccccCCHHHHhcceEEEccCCccCCCC----------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--
Confidence 000000000 1133456666655443332 33444443322111112345556788899999996411
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-- 279 (347)
.+..++.+..||+|||||++||||| ||||++||. +.|||++||
T Consensus 144 -----------~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 144 -----------YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred -----------hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 0134778999999999999999999 999999873 689999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+.+..+||++++ |++|++++.|++++++..+.+++++.+
T Consensus 213 ~~~~~~~d~v~~-l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 213 QQVARVADYVAF-LYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 577789999975 999999999999999988887776555
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=300.56 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=180.8
Q ss_pred HHHHHHhhhhhhhccC--------CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 53 VFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 53 ~~~~~~~~~~~~~~~~--------~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
+..+++.++++..+.+ ..-|+++||+|.|..++++ |+||||++.+|+.+|||||||+||||++|+|.
T Consensus 511 nmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v-----l~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV-----LSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce-----eecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 5667777777654432 2349999999999877666 77799999999999999999999999999999
Q ss_pred hcccCCCCCCCCcEEEECCEeCCCCcccccccc--CCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCC
Q 019048 125 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 202 (347)
Q Consensus 125 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~ 202 (347)
++++ .++|.|.+||+|+. .... -|+.+|.++||... +..++..|+.++..
T Consensus 586 Rffd-----v~sGsI~iDgqdIr------nvt~~SLRs~IGVVPQDtvL-----------FNdTI~yNIryak~------ 637 (790)
T KOG0056|consen 586 RFFD-----VNSGSITIDGQDIR------NVTQSSLRSSIGVVPQDTVL-----------FNDTILYNIRYAKP------ 637 (790)
T ss_pred HHhh-----ccCceEEEcCchHH------HHHHHHHHHhcCcccCccee-----------ecceeeeheeecCC------
Confidence 9999 99999999999986 1111 14445555555554 44455566654432
Q ss_pred hHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---
Q 019048 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 270 (347)
Q Consensus 203 ~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 270 (347)
....+++.++++..++.+.+..-|+++.+-|.|+++ .|||||||||||||++ ||.||+||.
T Consensus 638 -~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL------kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tE 710 (790)
T KOG0056|consen 638 -SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL------KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTE 710 (790)
T ss_pred -CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc------ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccH
Confidence 223456777788888888888888999999999876 6999999999999998 999999983
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+.|-|+|.| -...-.||.|.+ +++|+|+|.|.|++++.+..-.|.+++-
T Consensus 711 R~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv-i~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 711 RAIQAALARLCANRTTIVVAHRLSTIVNADLILV-ISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred HHHHHHHHHHhcCCceEEEeeeehheecccEEEE-EeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 889999999 456667999975 9999999999999999987777766663
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=310.56 Aligned_cols=225 Identities=15% Similarity=0.170 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcc-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk 121 (347)
.+....|+.++++.+++.... ....++++|++|+|+.+. ..+ |+|+||+|++|++++|+||||||||||++
T Consensus 287 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 287 ARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGK-KPT---LRGISFRLQAGEALAIIGPSGSGKSTLAR 362 (544)
T ss_pred HHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 344566777777554332111 123599999999996432 134 66699999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC
Q 019048 122 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 201 (347)
Q Consensus 122 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~ 201 (347)
+|+|+++ |++|+|.++|.++.. +.....+...++++|++.++..++.+|+..+.. ..
T Consensus 363 ll~g~~~-----~~~G~i~~~g~~i~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~---~~ 419 (544)
T TIGR01842 363 LIVGIWP-----PTSGSVRLDGADLKQ---------------WDRETFGKHIGYLPQDVELFPGTVAENIARFGE---NA 419 (544)
T ss_pred HHhCCCC-----CCCceEEECCEehhh---------------CCHHHHhhheEEecCCcccccccHHHHHhccCC---CC
Confidence 9999999 999999999998751 111222223334444455555556666653211 11
Q ss_pred ChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC--
Q 019048 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 270 (347)
Q Consensus 202 ~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 270 (347)
..+++.++++..++++.+...|+++.+.+++ ....||||||||++||||| ||||++||.
T Consensus 420 ----~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~------~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 420 ----DPEKIIEAAKLAGVHELILRLPDGYDTVIGP------GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred ----CHHHHHHHHHHhChHHHHHhCccccccccCC------CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 1234555667777665555555666555554 4568999999999999999 999999873
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
++|+|+||| ......||++++ |++|++++.|+++++..
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVITHRPSLLGCVDKILV-LQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE-EECCEEEeeCCHHHHhh
Confidence 689999999 445678999965 99999999999987753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=273.15 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=154.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~---~i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~-- 67 (232)
T cd03300 1 IELENVSKFYGGF---VA---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITNL-- 67 (232)
T ss_pred CEEEeEEEEeCCe---ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCcC--
Confidence 4789999999742 34 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
...++.+++++|+...+.++ +.+|+ .++.... ........+++.++++.+|+++
T Consensus 68 ----~~~~~~i~~~~q~~~~~~~~t~~~nl-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 68 ----PPHKRPVNTVFQNYALFPHLTVFENI-----------AFGLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ----ChhhcceEEEecccccCCCCcHHHHH-----------HHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 11133567777765544332 44443 3222111 1123344567788999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++.+.+||+||+||++||||| ||||++||. |.|||++|| ..+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999873 689999999 467
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCCh
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 316 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 316 (347)
.++||++++ |++|++++.|++++++..+.++.+
T Consensus 195 ~~~~d~i~~-l~~G~~~~~~~~~~~~~~~~~~~~ 227 (232)
T cd03300 195 LTMSDRIAV-MNKGKIQQIGTPEEIYEEPANRFV 227 (232)
T ss_pred HHhcCEEEE-EECCEEEecCCHHHHHhCCchHHH
Confidence 889999975 999999999999888776544443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=339.86 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=176.8
Q ss_pred HHHHHHHHHHhhhhhhh---c---c-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 49 RRDAVFREVLQSYDQLR---T---R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 49 ~~~~~~~~~~~~~~~~~---~---~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
...+|+.++++.+++.. + + ....|+++||+|+|..+.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCCCCCHH
Confidence 45567777765443321 0 0 1235999999999964321 34 6669999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.|+. .+...+.|...++|+|++.++..++.+|+..+.
T Consensus 1280 TLl~lL~rl~~-----p~~G~I~IDG~dI~---------------~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1280 SMLNALFRIVE-----LERGRILIDGCDIS---------------KFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred HHHHHHhCcCC-----CCCceEEECCEecc---------------cCCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 99999999999 99999999999987 234445555555566666666666777765321
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
....+++.++++.+++.+.+..+|+++.+.|.+. ..+||||||||++||||| |||||+|
T Consensus 1338 ------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~------G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1338 ------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA------GENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred ------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC------CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 1124567889999999887777888888888776 458999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
|. ++|+|+|+| -.....||||+| |++|++++.|+|++++.++...+
T Consensus 1406 D~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlV-Ld~G~IvE~Gt~~eLl~~~~g~f 1467 (1622)
T PLN03130 1406 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV-LDAGRVVEFDTPENLLSNEGSAF 1467 (1622)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHH
Confidence 83 899999999 345556999975 99999999999999998754434
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=313.13 Aligned_cols=224 Identities=12% Similarity=0.160 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhhhhhh---c---c--CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 48 RRRDAVFREVLQSYDQLR---T---R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~---~---~--~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
+....|+.++++..++.. . . ....++++||+|+|+++.. + |+++||+|++|++++|+||||||||||
T Consensus 303 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~i~~~i~~G~~~~ivG~sGsGKSTL 377 (585)
T TIGR01192 303 RAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ--G---VFDVSFEAKAGQTVAIVGPTGAGKTTL 377 (585)
T ss_pred HHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceeEEEcCCCEEEEECCCCCCHHHH
Confidence 345557777665432211 1 0 1235999999999975433 3 666999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+++|+|+++ |++|+|.++|.++.. +.....+...++++|++.++..++.+|+.++..
T Consensus 378 ~~ll~g~~~-----~~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--- 434 (585)
T TIGR01192 378 INLLQRVYD-----PTVGQILIDGIDINT---------------VTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--- 434 (585)
T ss_pred HHHHccCCC-----CCCCEEEECCEEhhh---------------CCHHHHHhheEEEccCCccCcccHHHHHhcCCC---
Confidence 999999999 999999999998751 122222333344555555555567777765422
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
.. ..+++.++++.+++.+.+...|+++.+.++ .....||||||||++||||| ||||++||.
T Consensus 435 ~~----~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~------~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~ 504 (585)
T TIGR01192 435 GA----TDEEVYEAAKAAAAHDFILKRSNGYDTLVG------ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504 (585)
T ss_pred CC----CHHHHHHHHHHhCcHHHHHhccccccchhc------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 11 123445566666666544444555554444 44668999999999999999 999999983
Q ss_pred ---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| ......||++++ |++|++++.|+++++...
T Consensus 505 ~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 505 ETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLF-LDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEE-EECCEEEEECCHHHHHHC
Confidence 799999999 344467999965 999999999999988765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=278.23 Aligned_cols=214 Identities=16% Similarity=0.198 Sum_probs=155.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
-+++|+++.|+. ..+ |+++||+|.+|++++|+|+||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 6 ~~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~-- 77 (251)
T PRK14244 6 ASVKNLNLWYGS---KQI---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV-- 77 (251)
T ss_pred EEeeeEEEEECC---eee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhc--
Confidence 468999999964 234 666999999999999999999999999999999975110003699999999876411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC-CChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~-~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.......++.++|++|+...+...+. +|+.++...... ......++.+.++++.+++.+.+
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~tv~-----------~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------- 139 (251)
T PRK14244 78 DTNVVLLRAKVGMVFQKPNPFPKSIY-----------DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL------- 139 (251)
T ss_pred ccchHHHhhhEEEEecCcccccCCHH-----------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------
Confidence 00000113346677766543332334 444332211111 11234456678899999996521
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHh
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~ 284 (347)
.+..++.+.+||||||||++||||| ||||++||. ++|||++|| .++..
T Consensus 140 ------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 140 ------GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred ------hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 0124678899999999999999999 999999883 799999999 57788
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
+||++++ |++|++++.|++++++..+.+++++.
T Consensus 214 ~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14244 214 VSDRVAF-FQSGRIVEYNTTQEIFKNPQSSKTKR 246 (251)
T ss_pred hcCEEEE-EECCEEEEeCCHHHHhcCCCChHHHH
Confidence 9999975 99999999999999998887776544
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=279.53 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=148.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC---CcEEEECCEeC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 146 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~---~G~I~~~g~~i 146 (347)
++|+++||++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 3 ~~l~~~nl~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 3 TIIRVEKLAKTFNQ---HQA---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTV 71 (262)
T ss_pred cEEEEeeEEEEeCC---eEE---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEec
Confidence 57999999999974 234 666999999999999999999999999999999998 65 59999999887
Q ss_pred CCCcc-ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhc-------cCCChHHHHHHHHHHHHHC
Q 019048 147 DGTYF-LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKI 217 (347)
Q Consensus 147 ~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~-------~~~~~~~~~~~i~~~l~~~ 217 (347)
..... .......++.++|++|+...+..+ +.+|+ .++.... ........++++.++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENV-----------LIGALGSTPFWRTCFSWFTREQKQRALQALTRV 140 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHH-----------HhhhcccccchhhhcccccHHHHHHHHHHHHHc
Confidence 41100 000111133456676665444332 44444 3221100 0011233456788999999
Q ss_pred CCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------C
Q 019048 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 271 (347)
Q Consensus 218 gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 271 (347)
++.+ ..++.+.+||||||||++||||| ||||++||. |
T Consensus 141 ~l~~-----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 203 (262)
T PRK09984 141 GMVH-----------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203 (262)
T ss_pred CCHH-----------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9986 45889999999999999999999 999999873 6
Q ss_pred CeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 272 ~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+|||++|| +.+..+||++++ |++|++++.|+++++
T Consensus 204 ~tvii~tH~~~~~~~~~d~i~~-l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 204 ITVVVTLHQVDYALRYCERIVA-LRQGHVFYDGSSQQF 240 (262)
T ss_pred CEEEEEeCCHHHHHHhCCEEEE-EECCEEEEeCCHHHh
Confidence 89999999 467899999975 999999999998774
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=273.89 Aligned_cols=183 Identities=17% Similarity=0.241 Sum_probs=137.6
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~---~~~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGG---HPV---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECC---EEe---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 47899999964 234 666999999999999999999999999999999999 99999999997653
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc---CCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .++.++|++|+...... +..++.+|+.++..... ........+++.++++.+++++
T Consensus 65 -~---~~~~i~~v~q~~~~~~~--------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 124 (213)
T cd03235 65 -K---ERKRIGYVPQRRSIDRD--------FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-------- 124 (213)
T ss_pred -H---HHhheEEeccccccccC--------CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH--------
Confidence 1 12345677776432100 11134455444321110 0112334567888999999976
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 125 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 125 ---------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999984 789999999 577
Q ss_pred HhcccEEEEEeeCCeEeecC
Q 019048 283 LSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g 302 (347)
..+||++++ |++| +++.|
T Consensus 196 ~~~~d~i~~-l~~~-~~~~g 213 (213)
T cd03235 196 LEYFDRVLL-LNRT-VVASG 213 (213)
T ss_pred HHhcCEEEE-EcCc-EeecC
Confidence 889999975 8876 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=298.58 Aligned_cols=235 Identities=14% Similarity=0.163 Sum_probs=189.8
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhhhhhcc-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCC
Q 019048 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (347)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpn 112 (347)
...|-++...|....|+++.+...+...+. +...|.++++++.=+. ....+ |+++||++.+||.++|||||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg-~~~pi---l~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG-QKKPI---LKGISFALQAGEALGIIGPS 371 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCC-CCCcc---eecceeEecCCceEEEECCC
Confidence 467777777888888999988777654332 2346999999985443 33455 55599999999999999999
Q ss_pred CChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhh
Q 019048 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 192 (347)
Q Consensus 113 GsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~ 192 (347)
|||||||.|+|.|.++ |++|.|++||.++. .|.....-.+++|.+|++.+|..++.+||+
T Consensus 372 gSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~---------------qWd~e~lG~hiGYLPQdVeLF~GTIaeNIa 431 (580)
T COG4618 372 GSGKSTLARLLVGIWP-----PTSGSVRLDGADLR---------------QWDREQLGRHIGYLPQDVELFDGTIAENIA 431 (580)
T ss_pred CccHHHHHHHHHcccc-----cCCCcEEecchhhh---------------cCCHHHhccccCcCcccceecCCcHHHHHH
Confidence 9999999999999999 99999999999886 344444445556666666666666666665
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------ch
Q 019048 193 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 263 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DE 263 (347)
...++...+++.++++..|..+-+...|++|.++|.+.. ..||||||||+++|||| ||
T Consensus 432 -------Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG~P~lvVLDE 498 (580)
T COG4618 432 -------RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYGDPFLVVLDE 498 (580)
T ss_pred -------hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcCCCcEEEecC
Confidence 122234456788888999998888889999999998884 48999999999999999 99
Q ss_pred hccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 264 PYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 264 Pts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|-++||. |.|+|+||| ..+...+|+|.+ |++|++-..|+.++++.+
T Consensus 499 PNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilv-l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 499 PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILV-LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeee-ecCChHHhcCCHHHHHHH
Confidence 9999984 999999999 688888999975 999999999999998765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=274.06 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=142.2
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||++.|+. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHI---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLP- 68 (230)
T ss_pred CEEEeEEEEeCC---eEE---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCC-
Confidence 579999999974 234 666999999999999999999999999999999999 99999999998875211
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCC-CCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~~~~ 230 (347)
.....++.++|++|+...+..+ ++.+|+.++.... ... ..+.+.++++.++ +..
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~---~~~~~~~~l~~~~~l~~--------- 123 (230)
T TIGR03410 69 --PHERARAGIAYVPQGREIFPRL----------TVEENLLTGLAAL-PRR---SRKIPDEIYELFPVLKE--------- 123 (230)
T ss_pred --HHHHHHhCeEEeccCCcccCCC----------cHHHHHHHHHHhc-Ccc---hHHHHHHHHHHHHhHHH---------
Confidence 1111123456777665443322 3344443332211 111 1233456666665 444
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
..++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 124 --------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA 195 (230)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH
Confidence 35888999999999999999999 999999873 689999999 578
Q ss_pred HhcccEEEEEeeCCeEeecCCcccc
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
..+||++++ +++|++++.|+++++
T Consensus 196 ~~~~d~v~~-l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 196 RELADRYYV-MERGRVVASGAGDEL 219 (230)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHc
Confidence 889999975 999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=304.43 Aligned_cols=196 Identities=12% Similarity=0.192 Sum_probs=151.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 71 (501)
T PRK10762 3 ALLQLKGIDKAFPG---VKA---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFN 71 (501)
T ss_pred ceEEEeeeEEEeCC---eEE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 57999999999964 234 666999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
. .....++.++|++|+...+..+ ++.+|+.++.... ...+....++++.++++.+|+.+
T Consensus 72 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 133 (501)
T PRK10762 72 G---PKSSQEAGIGIIHQELNLIPQL----------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF----- 133 (501)
T ss_pred C---HHHHHhCCEEEEEcchhccCCC----------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----
Confidence 0 0111123456666664333222 4445554432211 01123344567889999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 134 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 134 ------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred ------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35889999999999999999999 999999984 789999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+.+..+||++++ |++|+++..|+++++
T Consensus 202 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 202 KEIFEICDDVTV-FRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHhCCEEEE-EeCCEEEEecCcCcC
Confidence 578899999975 999999999988765
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=304.54 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=152.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC--CCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p--~~G~I~~~g~~i~ 147 (347)
++|+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|.++.
T Consensus 4 ~~l~~~nl~~~~~~---~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKA---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEELQ 72 (506)
T ss_pred ceEEEeeeEEEeCC---eEe---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECC
Confidence 57999999999964 235 566999999999999999999999999999999998 7 7999999999875
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
.. ......++.++|++|+...+..+ ++.+|+.++.... ...+.....+++.++++.+++..
T Consensus 73 ~~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (506)
T PRK13549 73 AS---NIRDTERAGIAIIHQELALVKEL----------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI---- 135 (506)
T ss_pred CC---CHHHHHHCCeEEEEeccccCCCC----------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC----
Confidence 11 01111133467777765433322 3444444432211 01123345567889999999976
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 136 -------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 136 -------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred -------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 35889999999999999999999 999999984 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
+.+..+||++++ |++|+++..|+++++.
T Consensus 203 ~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 203 LNEVKAISDTICV-IRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHhcCEEEE-EECCEEeeecccccCC
Confidence 578889999975 9999999999887663
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=274.45 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=159.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||++.|+. . .+ |+++||+|++||+++|+||||||||||+++|+|++......|++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~-~--~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD-A--HI---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC-e--EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5899999999974 2 34 6669999999999999999999999999999998641111137899999998874110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
......++.++|++|+...+ ..++.+|+.++............++++.++++.+++...+
T Consensus 77 --~~~~~~~~~i~~~~q~~~~~-----------~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------- 136 (250)
T PRK14266 77 --VDVVELRKKVGMVFQKPNPF-----------PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV------- 136 (250)
T ss_pred --ccHHHHhhheEEEecCCccC-----------cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------
Confidence 00111233456776664433 2244455544322111112344567788899999986421
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHh
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~ 284 (347)
....++.+.+||||||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 137 ------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 137 ------KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred ------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 1135788999999999999999999 999999884 789999999 57889
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+||++++ |++|++++.|++++++..+.++.++.++
T Consensus 211 ~~~~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14266 211 VSKYTSF-FLNGEIIESGLTDQIFINPKDKRTEDYI 245 (250)
T ss_pred hcCEEEE-EECCeEEEeCCHHHHHhCCCChHHHHHh
Confidence 9999975 9999999999999998888877765544
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=277.07 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=157.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|+.. .+ |+++||+|++||+++|+|+||||||||+++|+|+++..+..+++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 3579999999999742 34 66699999999999999999999999999999998711000179999999976531
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..........++.++|++|+...+ ..++.+|+.++............++++.++++.+++...+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-----------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 151 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-----------PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV----- 151 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-----------cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-----
Confidence 000000001133456666554332 2244455544322111111223345677888888875311
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 152 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 152 --------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred --------hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 1145788999999999999999999 999999983 689999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.++||++++ |++|++++.|++++++..+.+++++.++
T Consensus 224 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 260 (265)
T PRK14252 224 ARVSDYTAY-MYMGELIEFGATDTIFIKPKNKQTEDYI 260 (265)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 789999975 9999999999999998887777765544
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=276.73 Aligned_cols=193 Identities=11% Similarity=0.146 Sum_probs=138.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 69 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALA-- 69 (237)
T ss_pred CEEEEEEEecCCCC-ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhc--
Confidence 47899999996432 234 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHH-----HHHHHHHHC--CCCcccc
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 224 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 224 (347)
.... .++.++|++|+ +.++..++.+|+.++.. ........+ .+.++++.+ +++.
T Consensus 70 -~~~~-~~~~i~~~~q~-----------~~~~~~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--- 130 (237)
T cd03252 70 -DPAW-LRRQVGVVLQE-----------NVLFNRSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDT--- 130 (237)
T ss_pred -CHHH-HhhcEEEEcCC-----------chhccchHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccc---
Confidence 0000 12234555554 33333356666654321 111111111 122333443 3333
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 196 (237)
T cd03252 131 --------------IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHR 196 (237)
T ss_pred --------------hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 34778999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+ ..||++++ |++|++++.|++++++..
T Consensus 197 ~~~~-~~~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 197 LSTV-KNADRIIV-MEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHH-HhCCEEEE-EECCEEEEEcCHHHHHhc
Confidence 455 56999975 999999999999887755
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=303.65 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=152.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~---~~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 72 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNKL 72 (510)
T ss_pred ceEEEeeeEEEcCC---eEE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCCC
Confidence 57999999999974 234 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc---cC---CChHHHHHHHHHHHHHCCCCccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RR---SDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~---~~---~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
. .....++.++|++|+...+..+ ++.+|+.++.... .. .+..+..+++.++++.+|+.+
T Consensus 73 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-- 137 (510)
T PRK09700 73 D---HKLAAQLGIGIIYQELSVIDEL----------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-- 137 (510)
T ss_pred C---HHHHHHCCeEEEeecccccCCC----------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC--
Confidence 1 1111123467777765433332 3334443322100 01 122345567889999999986
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 138 ---------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 202 (510)
T PRK09700 138 ---------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS 202 (510)
T ss_pred ---------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35889999999999999999999 999999984 79999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
| +.+..+||++++ |++|+++..|++++++
T Consensus 203 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 203 HKLAEIRRICDRYTV-MKDGSSVCSGMVSDVS 233 (510)
T ss_pred CCHHHHHHhCCEEEE-EECCEEeeecchhhCC
Confidence 9 578889999975 9999999999987764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=336.37 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhhhhhhh---c---c-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChH
Q 019048 48 RRRDAVFREVLQSYDQLR---T---R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 116 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~---~---~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGK 116 (347)
.....|+.++++.+++.. . . ....|+++||+++|+.+.. .+ |+|+||+|++||.+||||+|||||
T Consensus 1250 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaIVGrTGsGK 1325 (1522)
T TIGR00957 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGIVGRTGAGK 1325 (1522)
T ss_pred HHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEEECCCCCCH
Confidence 345667888765443321 0 0 1235999999999965422 34 666999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhh
Q 019048 117 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 196 (347)
Q Consensus 117 STLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~ 196 (347)
|||+++|.|+++ |++|+|.+||.|+. .+..++.|...++|+|++.++..++.+|+...
T Consensus 1326 STL~~lL~rl~~-----~~~G~I~IdG~dI~---------------~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-- 1383 (1522)
T TIGR00957 1326 SSLTLGLFRINE-----SAEGEIIIDGLNIA---------------KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-- 1383 (1522)
T ss_pred HHHHHHHhcCcc-----CCCCeEEECCEEcc---------------ccCHHHHHhcCeEECCCCcccCccHHHHcCcc--
Confidence 999999999999 99999999999997 34445555555666666666666677776410
Q ss_pred hccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccC
Q 019048 197 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 267 (347)
Q Consensus 197 ~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~ 267 (347)
. ....+++.++++.+++.+.+..+|+++.+.|++. ...||||||||++||||| |||||+
T Consensus 1384 --~----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~------G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSa 1451 (1522)
T TIGR00957 1384 --S----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG------GENLSVGQRQLVCLARALLRKTKILVLDEATAA 1451 (1522)
T ss_pred --c----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 0 1123567788999999888878889999888776 347999999999999999 999999
Q ss_pred CCC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 268 FRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 268 Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
||. ++|+|+|+| -.....||||+| |++|++++.|+|++++.+
T Consensus 1452 lD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlV-ld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIV-LDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 983 899999999 455666999975 999999999999999876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=302.79 Aligned_cols=194 Identities=15% Similarity=0.179 Sum_probs=152.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++|++ . .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 9 ~~~l~~~~l~~~~~~-~--~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 9 PPLLCARSISKQYSG-V--EV---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR 77 (510)
T ss_pred CceEEEEeEEEEeCC-c--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 358999999999974 2 34 666999999999999999999999999999999999 999999999988752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. .....++.++|++|+...+..+ ++.+|+.++... ....++++.++++.+++..
T Consensus 78 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~------- 132 (510)
T PRK15439 78 LT---PAKAHQLGIYLVPQEPLLFPNL----------SVKENILFGLPK-----RQASMQKMKQLLAALGCQL------- 132 (510)
T ss_pred CC---HHHHHhCCEEEEeccCccCCCC----------cHHHHhhccccc-----chHHHHHHHHHHHHcCCCc-------
Confidence 11 1111123456777765433322 344555443210 1234567888999999986
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ----------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 133 ----------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred ----------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999984 799999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+..+||++++ |++|++++.|++++++.
T Consensus 203 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 203 IRQLADRISV-MRDGTIALSGKTADLST 229 (510)
T ss_pred HHHhCCEEEE-EECCEEEEecChHHcCH
Confidence 8899999975 99999999999877653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=282.18 Aligned_cols=230 Identities=18% Similarity=0.196 Sum_probs=158.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|+.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~---~i---L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD---HA---LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCCe---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999752 34 66699999999999999999999999999999998511001479999999988741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhh--hhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~--~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
. .. .....++.++|++|+...+...+.+|+.+..... .....+. ............+++.++++.+++.+.+
T Consensus 117 ~-~~-~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 190 (305)
T PRK14264 117 D-GV-NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH-GDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--- 190 (305)
T ss_pred c-cc-cHHHHhhceEEEccCCccccccHHHHHHhHHhhc-ccccccccccccccCchHHHHHHHHHHHHHcCCchhh---
Confidence 0 00 0111133567777765433323444443321100 0000000 0000001123356788899999885311
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--h
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 280 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~ 280 (347)
.+..++++.+|||||+||++||||| ||||++||. +.|||++|| +
T Consensus 191 ----------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~ 260 (305)
T PRK14264 191 ----------NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260 (305)
T ss_pred ----------hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 1145788999999999999999999 999999873 679999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
.+..+||+++++|++|++++.|++++++..+.++.+..++
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 300 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYI 300 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 7788999975448999999999999998777666655443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.28 Aligned_cols=206 Identities=12% Similarity=0.082 Sum_probs=168.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||+|+|+.+.. .+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 4999999999965432 24 666999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.+...+.+...++|+|++.++..++.+|+.... ....+++.++++.+++.+.+..+|+++
T Consensus 1376 ------------~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ------------AYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ------------cCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 234445555566666666666667777774211 112367888999999998877888888
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh----------chhccCCCC---------------CCeEEEEec-hHHHh
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------DEPts~Ld~---------------g~tiIiiTH-~~~~~ 284 (347)
.+.|.+.+ .+||||||||++||||| |||||+||. ++|+|+|+| -....
T Consensus 1436 dt~vge~G------~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLEGG------SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccCCc------CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 88887763 47999999999999999 999999883 799999999 45667
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
.||+|++ |++|++++.|+|++++.++...+
T Consensus 1510 ~~DrIlV-Ld~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1510 QYDKIIV-MDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhCCCCHH
Confidence 7999975 99999999999999987654443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=275.60 Aligned_cols=215 Identities=19% Similarity=0.212 Sum_probs=156.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+.+.+++++++|+. ..+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGN---FMA---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCC---EEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 457999999999974 234 66699999999999999999999999999999999710000279999999998741
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
... .....++.++|++|+...+. .++.+|+.++..... . .....+++.++++.+++.+.+
T Consensus 80 ~~~--~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i----- 139 (261)
T PRK14263 80 KGV--DPVVVRRYIGMVFQQPNPFS-----------MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEV----- 139 (261)
T ss_pred ccc--chHhhhhceEEEecCCcccc-----------ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhh-----
Confidence 100 00112334567766654332 234455444322111 1 123456788899999986522
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~ 282 (347)
.+..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 140 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i 211 (261)
T PRK14263 140 --------KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211 (261)
T ss_pred --------hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 1123678899999999999999999 999999873 789999999 568
Q ss_pred HhcccEEEEEee--------CCeEeecCCcccccCCCCCCChHH
Q 019048 283 LSLTDRARIRTY--------LGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 283 ~~~aDri~v~l~--------~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
..+|||+++ |+ +|++++.|++++++..+.++.++.
T Consensus 212 ~~~~d~v~~-l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 254 (261)
T PRK14263 212 IRVADTTAF-FSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSD 254 (261)
T ss_pred HHhCCEEEE-EecccccccCCceEEEeCCHHHHHhCCCcHHHHH
Confidence 899999975 85 899999999999988776555443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=280.22 Aligned_cols=209 Identities=12% Similarity=0.116 Sum_probs=152.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|..+. ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~~-~~~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~~--- 69 (275)
T cd03289 3 MTVKDLTAKYTEGG-NAV---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWNS--- 69 (275)
T ss_pred EEEEEEEEEeCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhhh---
Confidence 78999999995322 134 666999999999999999999999999999999986 47999999998751
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
+...+.+...++++|++.++..++.+|+.... .. ..+++.++++.+||.+.....|+.+.
T Consensus 70 ------------~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~----~~----~~~~~~~~l~~~gL~~~~~~~p~~l~ 129 (275)
T cd03289 70 ------------VPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG----KW----SDEEIWKVAEEVGLKSVIEQFPGQLD 129 (275)
T ss_pred ------------CCHHHHhhhEEEECCCcccchhhHHHHhhhcc----CC----CHHHHHHHHHHcCCHHHHHhCccccc
Confidence 11112222334445555555556667764210 01 12456778889999874433344444
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
|.|.+. ...||||||||++||||| ||||++||. ++|||+||| +.+ ..
T Consensus 130 ~~~~~~------g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i-~~ 202 (275)
T cd03289 130 FVLVDG------GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM-LE 202 (275)
T ss_pred ceecCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-Hh
Confidence 444332 235999999999999999 999999873 799999999 444 45
Q ss_pred ccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
|||+++ |++|++++.|++++++..+ .+...++...
T Consensus 203 ~dri~v-l~~G~i~~~g~~~~l~~~~--~~~~~~~~~~ 237 (275)
T cd03289 203 CQRFLV-IEENKVRQYDSIQKLLNEK--SHFKQAISPS 237 (275)
T ss_pred CCEEEE-ecCCeEeecCCHHHHhhCc--HHHHHHHhhc
Confidence 999975 9999999999999998854 3445555443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=271.82 Aligned_cols=198 Identities=14% Similarity=0.220 Sum_probs=137.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.... + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~--~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 70 (229)
T cd03254 3 IEFENVNFSYDEKKP--V---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDI-- 70 (229)
T ss_pred EEEEEEEEecCCCCc--c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHc--
Confidence 789999999964322 4 666999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.. ...++.++|+ +|++.++..++.+|+.+.... .. ..++.++++.+++.......++++
T Consensus 71 -~~-~~~~~~i~~~-----------~q~~~~~~~tv~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~- 129 (229)
T cd03254 71 -SR-KSLRSMIGVV-----------LQDTFLFSGTIMENIRLGRPN---AT----DEEVIEAAKEAGAHDFIMKLPNGY- 129 (229)
T ss_pred -CH-HHHhhhEEEe-----------cCCchhhhhHHHHHHhccCCC---CC----HHHHHHHHHHhChHHHHHhCcccc-
Confidence 00 0012223444 444444444666776543221 11 122333344444332110000000
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
.+.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+ ..
T Consensus 130 -----~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~ 203 (229)
T cd03254 130 -----DTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-KN 203 (229)
T ss_pred -----cCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-hh
Confidence 0134667899999999999999999 999999983 789999999 455 45
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||++++ |++|++++.|+.++++.
T Consensus 204 ~d~i~~-l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 204 ADKILV-LDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEE-EeCCeEEEeCCHHHHHh
Confidence 999975 99999999988777654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=278.33 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=147.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC--------CcEEEEC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 142 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~--------~G~I~~~ 142 (347)
||+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHR---AI---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCE---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 58999999999642 34 666999999999999999999999999999999998 87 8999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc---CCChHHHHHHHHHHHHHCCC
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGC 219 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~~~~~~~~~~i~~~l~~~gl 219 (347)
|.++.... ... .++.++|++|+...+.. .++.+|+.++..... ........+.+.++++.+++
T Consensus 70 g~~~~~~~---~~~-~~~~~~~v~q~~~~~~~----------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (272)
T PRK13547 70 GEPLAAID---APR-LARLRAVLPQAAQPAFA----------FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135 (272)
T ss_pred CEEcccCC---HHH-HHhhcEEecccCCCCCC----------CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc
Confidence 98874110 000 11224566665432211 134455443321000 11112345567889999999
Q ss_pred CcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------------chhccCCCC-----------
Q 019048 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD----------- 270 (347)
Q Consensus 220 ~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------------DEPts~Ld~----------- 270 (347)
.. ..++++.+|||||+||++||||| ||||++||.
T Consensus 136 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 198 (272)
T PRK13547 136 TA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198 (272)
T ss_pred Hh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 87 45889999999999999999987 899999873
Q ss_pred ------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 ------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
|+|||+||| +.+..+||++++ |++|++++.|++++++.
T Consensus 199 ~~~~~~~~tviiisH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 199 RLARDWNLGVLAIVHDPNLAARHADRIAM-LADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEEE-EECCeEEEecCHHHHcC
Confidence 689999999 577789999975 99999999999887754
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=276.35 Aligned_cols=195 Identities=14% Similarity=0.190 Sum_probs=146.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~~~--i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~-- 73 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT--A---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQ-- 73 (272)
T ss_pred eEEEEeEEEEecCCcE--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHH--
Confidence 6999999999963333 3 677999999999999999999999999999999999 999999999988631
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---ccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
...++.++|++|+......+ ...+.+++..+... .........++++.++++.+|+.+
T Consensus 74 -----~~~~~~i~~v~q~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 134 (272)
T PRK15056 74 -----ALQKNLVAYVPQSEEVDWSF--------PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE------ 134 (272)
T ss_pred -----hhccceEEEeccccccccCC--------CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh------
Confidence 11122467777765321100 00122222211100 000112334556778899999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 135 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 135 -----------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45889999999999999999999 999999874 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+..+||+++ ++ +|++++.|++++++.
T Consensus 204 ~~~~~~d~v~-~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 204 SVTEFCDYTV-MV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhCCEEE-EE-CCEEEeecCHHhccC
Confidence 7889999994 36 899999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=267.61 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=142.2
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. . .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~-~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGK-Q--TA---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECC-E--EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 578999999974 2 34 666999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.. .+.++|++|+...+... +.+|+.+ ..... ... ..++.++++.+++++
T Consensus 67 ---~~--~~~~~~~~q~~~~~~~~t~~~~~~~-----------~~~~~-~~~----~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ---KD--LHKIGSLIESPPLYENLTARENLKV-----------HTTLL-GLP----DSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ---cc--cccEEEEcCCCCccccCCHHHHHHH-----------HHHHc-CCC----HHHHHHHHHHcCCcH---------
Confidence 11 12456777665443322 4444432 21111 111 245778899999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++.+.+|||||+||++||||+ ||||++||. |.|||++|| +.+.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45888999999999999999999 999999873 789999999 5677
Q ss_pred hcccEEEEEeeCCeEeecCCcc
Q 019048 284 SLTDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~ 305 (347)
.+||++++ |++|+++..|++.
T Consensus 189 ~~~d~i~~-l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIGI-ISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEEE-EeCCEEEEecChh
Confidence 89999975 9999999998874
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=270.91 Aligned_cols=190 Identities=10% Similarity=0.077 Sum_probs=141.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|+.. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~i~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---KI---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred CceEEEeccEEeeCCc---ee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 3579999999999742 34 666999999999999999999999999999999999 999999999988751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. . ...++.++|++|+...+ ..++.+|+.++..... . ....+++.++++.+++...
T Consensus 74 ~~---~-~~~~~~i~~~~q~~~l~-----------~~tv~enl~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 74 LK---P-EIYRQQVSYCAQTPTLF-----------GDTVYDNLIFPWQIRN-Q--QPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred CC---H-HHHHhccEEEecccccc-----------cccHHHHHHhHHhhcC-C--ChHHHHHHHHHHHcCCChH------
Confidence 10 0 00123456666654332 2244455443221111 1 1123457789999999632
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
..++++.+|||||+||++||||| ||||++||. |.|||++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 35889999999999999999999 999999873 789999999 4
Q ss_pred HHHhcccEEEEEe-eCCeEeecCCcc
Q 019048 281 DLLSLTDRARIRT-YLGELLGIPPAK 305 (347)
Q Consensus 281 ~~~~~aDri~v~l-~~G~iv~~g~~~ 305 (347)
.+ ..||++++ | +++..+++|+++
T Consensus 200 ~~-~~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EI-NHADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HH-HhCCEEEE-EecccchHhhhhhc
Confidence 55 46999976 7 577788888764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=271.19 Aligned_cols=193 Identities=15% Similarity=0.213 Sum_probs=139.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+... ..+ ++++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-- 69 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDY-- 69 (234)
T ss_pred CEEEEEEEEeCCCC-ccc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhC--
Confidence 57899999996532 124 667999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHH-----HHHHHHHHC--CCCcccc
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 224 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 224 (347)
... ..++.++|++|+... +..++.+|+.++... .......+ .+.++++.+ ++..
T Consensus 70 -~~~-~~~~~i~~~~q~~~~-----------~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 130 (234)
T cd03251 70 -TLA-SLRRQIGLVSQDVFL-----------FNDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDT--- 130 (234)
T ss_pred -CHH-HHHhhEEEeCCCCee-----------ccccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcce---
Confidence 000 112345566655433 223445555443211 11111111 233444444 4444
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
..++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 131 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 196 (234)
T cd03251 131 --------------VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR 196 (234)
T ss_pred --------------eeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34678999999999999999999 999999873 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..+.. ||++++ |++|++++.|++++++..
T Consensus 197 ~~~~~~-~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 197 LSTIEN-ADRIVV-LEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHhh-CCEEEE-ecCCeEeeeCCHHHHHHc
Confidence 45554 999975 999999999998877644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=267.71 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=141.7
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++|+++.|+.+. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGA 72 (220)
T ss_pred CEEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhc
Confidence 378999999996431 1235 666999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .......++.++|++|+...+..+ +.+|+.+ +.............+++.++++.+|+.+
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 133 (220)
T TIGR02982 73 S-EKELVQLRRNIGYIFQAHNLLGFLTARQNVQM-----------ALELQPNLSYQEARERARAMLEAVGLGD------- 133 (220)
T ss_pred C-HhHHHHHHhheEEEcCChhhcCCCCHHHHHHH-----------HHHhccCCCHHHHHHHHHHHHHHcCChh-------
Confidence 0 000001133456666665444322 4444433 2211111223445567889999999976
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~ 281 (347)
..++++.+||+|||||++||||| ||||++||. ++|+|++|| ..
T Consensus 134 ----------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 134 ----------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999873 799999999 34
Q ss_pred HHhcccEEEEEeeCCeEe
Q 019048 282 LLSLTDRARIRTYLGELL 299 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv 299 (347)
...+||++++ |++|+++
T Consensus 204 ~~~~~d~v~~-l~~g~~~ 220 (220)
T TIGR02982 204 ILDVADRIVH-MEDGKLL 220 (220)
T ss_pred HHhhCCEEEE-EECCEEC
Confidence 6689999975 9999863
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=268.11 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=134.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.+. ..+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 72 (220)
T cd03245 3 IEFRNVSFSYPNQE-IPA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQLD- 72 (220)
T ss_pred EEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHCC-
Confidence 78999999996422 234 666999999999999999999999999999999999 99999999998764100
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
... .++.++|++|+. .++..++.+|+.+... .. ..+.+.++++.+++.+.+...|+++-
T Consensus 73 --~~~-~~~~i~~~~q~~-----------~~~~~tv~e~l~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 73 --PAD-LRRNIGYVPQDV-----------TLFYGTLRDNITLGAP---LA----DDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred --HHH-HHhhEEEeCCCC-----------ccccchHHHHhhcCCC---CC----CHHHHHHHHHHcCcHHHHHhcccccc
Confidence 000 122345555543 3333355566654321 11 12345567788888652210111110
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhcc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~a 286 (347)
. .....+.+||||||||++||||| ||||++||. ++|||++|| ....++|
T Consensus 132 ~------~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 L------QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred c------eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 0 01223579999999999999999 999999884 579999999 2334799
Q ss_pred cEEEEEeeCCeEeecC
Q 019048 287 DRARIRTYLGELLGIP 302 (347)
Q Consensus 287 Dri~v~l~~G~iv~~g 302 (347)
|++++ |++|++++.|
T Consensus 206 d~v~~-l~~g~i~~~~ 220 (220)
T cd03245 206 DRIIV-MDSGRIVADG 220 (220)
T ss_pred CEEEE-EeCCeEeecC
Confidence 99975 9999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=269.47 Aligned_cols=194 Identities=11% Similarity=0.182 Sum_probs=137.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+......+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDL-- 70 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhc--
Confidence 478999999964321234 566999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHH-----HHHHHHHHC--CCCcccc
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 224 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~-----~i~~~l~~~--gl~~~~~ 224 (347)
.... .++.++|++ |++.++..++.+|+.++... .......+ .+.++++.+ +++.
T Consensus 71 -~~~~-~~~~i~~~~-----------q~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 131 (238)
T cd03249 71 -NLRW-LRSQIGLVS-----------QEPVLFDGTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDT--- 131 (238)
T ss_pred -CHHH-HHhhEEEEC-----------CchhhhhhhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccce---
Confidence 0000 012234444 44444444666776654221 11111111 111222222 3332
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
..++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 132 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~ 197 (238)
T cd03249 132 --------------LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHR 197 (238)
T ss_pred --------------eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 24677899999999999999999 999999983 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+. +||++++ |++|++++.|+.+++...
T Consensus 198 ~~~~~-~~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 198 LSTIR-NADLIAV-LQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HHHHh-hCCEEEE-EECCEEEEeCCHHHHhhc
Confidence 4554 8999975 999999999988777654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=301.94 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhhhhhhhc----c--CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT----R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~----~--~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk 121 (347)
+....|+.++++.+++... . ....|+++||+|+|++++ .++ |+|+||+|++|++++|+||||||||||+|
T Consensus 291 ~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ 366 (529)
T TIGR02857 291 VAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRR-APA---LRPVSFTVPPGERVALVGPSGAGKSTLLN 366 (529)
T ss_pred HHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCC-ccc---ccceeEEECCCCEEEEECCCCCCHHHHHH
Confidence 3455677777653322111 0 113599999999997543 134 66699999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCC
Q 019048 122 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 201 (347)
Q Consensus 122 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~ 201 (347)
+|+|+++ |++|+|.++|.++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 367 ll~g~~~-----~~~G~I~~~g~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~----- 421 (529)
T TIGR02857 367 LLLGFVD-----PTEGSIAVNGVPLA---------------DADADSWRDQIAWVPQHPFLFAGTIAENIRLARP----- 421 (529)
T ss_pred HHhcCCC-----CCCcEEEECCEehh---------------hCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC-----
Confidence 9999999 99999999999986 2233344444555666666666677777765432
Q ss_pred ChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC--
Q 019048 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 270 (347)
Q Consensus 202 ~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 270 (347)
...++++.++++.+++.+.+...|+++.++|++. ..+||||||||++||||| ||||++||.
T Consensus 422 --~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~------g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 --DASDAEIRRALERAGLDEFVAALPQGLDTLIGEG------GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred --CCCHHHHHHHHHHcCcHHHHHhCcccccchhccc------cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1123567788999999988888888888887775 457999999999999999 999999984
Q ss_pred -------------CCeEEEEec-hHHHhcccEEEE
Q 019048 271 -------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 271 -------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
++|+|+||| -...+.||+|++
T Consensus 494 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 494 EALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 799999999 455577999964
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=268.16 Aligned_cols=198 Identities=12% Similarity=0.193 Sum_probs=136.6
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.+..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~~-----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~-- 68 (236)
T cd03253 1 IEFENVTFAYDPGRPV-----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREV-- 68 (236)
T ss_pred CEEEEEEEEeCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhC--
Confidence 4789999999643323 677999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.....++.++|++|+ +.++..++.+|+.++... .... .+.++++.+++...+...+.
T Consensus 69 --~~~~~~~~i~~~~q~-----------~~~~~~tv~~nl~~~~~~---~~~~----~~~~~~~~~~l~~~~~~l~~--- 125 (236)
T cd03253 69 --TLDSLRRAIGVVPQD-----------TVLFNDTIGYNIRYGRPD---ATDE----EVIEAAKAAQIHDKIMRFPD--- 125 (236)
T ss_pred --CHHHHHhhEEEECCC-----------ChhhcchHHHHHhhcCCC---CCHH----HHHHHHHHcCcHHHHHhccc---
Confidence 000012234455544 334434566666554221 1111 12223333333221000000
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
.-.+..++.+.+||||||||++||||| ||||++||. |.|||++|| +.+ ..
T Consensus 126 ---~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~ 201 (236)
T cd03253 126 ---GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN 201 (236)
T ss_pred ---cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh
Confidence 001134667889999999999999999 999999873 689999999 455 45
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||++++ |++|++++.|+.+++..
T Consensus 202 ~d~~~~-l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 202 ADKIIV-LKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEEE-EECCEEEeeCCHHHHhh
Confidence 999975 99999999998877765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=268.44 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=143.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i 146 (347)
.++|+++||++.|++ ..+ |+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNE---NEI---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCC---EEe---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 468999999999974 234 6669999999999999999999999999999998 56 8999999999887
Q ss_pred CCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
.... .....+..+++++|+...+... +.++..+.... ... .............+++.++++.+++.+.
T Consensus 74 ~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~--- 142 (252)
T CHL00131 74 LDLE---PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS--KRK---FQGLPELDPLEFLEIINEKLKLVGMDPS--- 142 (252)
T ss_pred ccCC---hhhhheeeEEEEeccccccccccHHHHHHHhhhh--hhc---ccccccccHHHHHHHHHHHHHHcCCchh---
Confidence 5211 0011111245666665443332 33333221100 000 0000001122334567889999999732
Q ss_pred ccceeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH 279 (347)
..++.+. .|||||+||++||||| ||||++||. |.|||++||
T Consensus 143 -------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 143 -------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred -------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2467776 5999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEeeCCeEeecCCcccc
Q 019048 280 --GDLLSL-TDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 280 --~~~~~~-aDri~v~l~~G~iv~~g~~~~l 307 (347)
+.+..+ ||++++ |++|++++.|+++..
T Consensus 210 ~~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 210 YQRLLDYIKPDYVHV-MQNGKIIKTGDAELA 239 (252)
T ss_pred CHHHHHhhhCCEEEE-EeCCEEEEecChhhh
Confidence 456565 899975 999999999988743
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=268.36 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=134.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++... .. ..++++|+...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~------~~---~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITEP------GP---DRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCCC------Ch---hheEEecCcccC
Confidence 356999999999999999999999999999999999 9999999999987510 00 124666655443
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhh-ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDD-ASDNINMIKLWIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~-v~qn~~~~~~~v~~~v~~~~~~-~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
... +.+|+ .++... ..........+++.++++.+++.+ ..++++.+||||
T Consensus 67 ~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG 118 (230)
T TIGR01184 67 PWLTVRENI-----------ALAVDRVLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGG 118 (230)
T ss_pred CCCCHHHHH-----------HHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHH
Confidence 322 44444 332110 011223445567888999999986 458899999999
Q ss_pred HHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecC
Q 019048 251 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 251 qrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g 302 (347)
||||++||||| ||||++||. |+|||++|| +.+..+||++++ |++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~-l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM-LTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE-EeCCcEeccc
Confidence 99999999999 999999873 789999999 577889999975 9999999999
Q ss_pred Ccccc
Q 019048 303 PAKQI 307 (347)
Q Consensus 303 ~~~~l 307 (347)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 87766
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=267.85 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=142.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC----CCcEEEECCEeCCCCccccccccCCCccceeecc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 168 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p----~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~ 168 (347)
|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|+++|+++.. ....++.++|++|+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~~------~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLLP------LSIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEechh------hhhhhheeEEEecC
Confidence 556999999999999999999999999999999999 8 89999999998751 12222356778777
Q ss_pred cc-ccc-cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCC
Q 019048 169 TR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (347)
Q Consensus 169 ~~-~~~-~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~ 245 (347)
.. .+. .+ +.++. .+..... ........+++.++++.+++++. .+..++.+.
T Consensus 71 ~~~~~~~~~t~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~ 124 (230)
T TIGR02770 71 PRTAFNPLFTMGNHA-----------IETLRSL-GKLSKQARALILEALEAVGLPDP--------------EEVLKKYPF 124 (230)
T ss_pred chhhcCcccCHHHHH-----------HHHHHHc-CccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChh
Confidence 53 121 11 33332 2211111 11123345678899999999730 004588899
Q ss_pred CCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCe
Q 019048 246 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~ 297 (347)
+||||||||++||||| ||||++||. ++|||++|| +.+..+||++++ |++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~-l~~G~ 203 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV-MDDGR 203 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCE
Confidence 9999999999999999 999999873 689999999 577789999975 99999
Q ss_pred EeecCCcccccCCCCCCChHHH
Q 019048 298 LLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 298 iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
+++.|++++++..+...+.+.+
T Consensus 204 i~~~~~~~~~~~~~~~~~~~~~ 225 (230)
T TIGR02770 204 IVERGTVKEIFYNPKHETTRKL 225 (230)
T ss_pred EEEeCCHHHHHhCcCCHHHHHH
Confidence 9999999999877654444333
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=255.93 Aligned_cols=215 Identities=17% Similarity=0.137 Sum_probs=164.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe---
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~--- 145 (347)
.|++++.++++.|+... . .++|||++.+||+++|||+||||||||++||++-+. |++|+|.|.-.+
T Consensus 4 ~PLL~V~~lsk~Yg~~~---g---c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK---G---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQP 72 (258)
T ss_pred CcceeehhhhhhhCCCc---C---ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCCc
Confidence 47899999999998643 3 566999999999999999999999999999999999 999999997533
Q ss_pred --CCCCccccccccCCCccceeeccccccccchhhhhHhhHH---HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 146 --i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~---~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
+...+..+...+.|...||+- |||..... +...||..-+.......-..++..+.++|+.+.++
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~Vh-----------QnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVH-----------QNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141 (258)
T ss_pred hhHhhhchHHHHHHhhhccceee-----------cCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC
Confidence 222222222233344444444 44433222 22233332222222222346677888999999998
Q ss_pred cccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ti 274 (347)
... .+..|..+|||||||+.|||-| ||||.|||- +.++
T Consensus 142 ~~R----------------iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 142 LDR----------------IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred ccc----------------ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 754 4889999999999999999999 999999872 8899
Q ss_pred EEEech--HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 275 VVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 275 IiiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+++||+ .+.-+++|..+ |++|++++.|-++.++..|.||||.-++.+
T Consensus 206 viVTHDl~VarLla~rlmv-mk~g~vve~GLTDrvLDDP~hPYTQLLVSs 254 (258)
T COG4107 206 VIVTHDLAVARLLADRLMV-MKQGQVVESGLTDRVLDDPHHPYTQLLVSS 254 (258)
T ss_pred EEEechhHHHHHhhhccee-ecCCCEeccccccccccCCCCchHHHHHHH
Confidence 999994 56678999975 999999999999999999999999877764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=295.85 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=147.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 3 SLQISQGTFRLSDT---KT---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLS 71 (490)
T ss_pred eEEEEeEEEEcCCe---ee---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccCC
Confidence 69999999999742 34 666999999999999999999999999999999999 99999999987653110
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
... .++.+++++|+.... +..+....+..++.+++..+ ...++++.++++.+++++
T Consensus 72 ---~~~-~~~~i~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--------- 127 (490)
T PRK10938 72 ---FEQ-LQKLVSDEWQRNNTD--MLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA--------- 127 (490)
T ss_pred ---HHH-HHHHhceeccCcchh--hcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh---------
Confidence 000 122356666653211 00000001112333443211 123467888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.+.
T Consensus 128 --------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 128 --------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 45899999999999999999999 999999984 789999999 5788
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.+||++++ |++|+++..|++++++..
T Consensus 200 ~~~d~v~~-l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 200 DFVQFAGV-LADCTLAETGEREEILQQ 225 (490)
T ss_pred hhCCEEEE-EECCEEEEeCCHHHHhcc
Confidence 99999975 999999999998877654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=260.67 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=137.9
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
+.+ ||+++|++. . + |+||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~-~l~~~~~~~--~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 2 LCV-DIEKRLPDF--T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRK 66 (214)
T ss_pred cee-eeeEecCCe--e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccc
Confidence 445 999999752 2 3 49999999 9999999999999999999999999 999999999988641100
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.......++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++..
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~---------- 123 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHL----------NVRENLAFGLKRK---RNREDRISVDELLDLLGLDH---------- 123 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCC----------CHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHh----------
Confidence 000111133466777665443322 3334433322110 12334566888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +.+.
T Consensus 124 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 124 -------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred -------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence 45889999999999999999999 999999873 689999999 5677
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
.+||++++ |++|++++.|
T Consensus 197 ~~~d~i~~-l~~G~i~~~g 214 (214)
T cd03297 197 YLADRIVV-MEDGRLQYIG 214 (214)
T ss_pred HhcCEEEE-EECCEEEecC
Confidence 89999975 9999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=263.78 Aligned_cols=185 Identities=12% Similarity=0.175 Sum_probs=136.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+......+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 80 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPISQ 80 (226)
T ss_pred CceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchHH
Confidence 478999999999964321234 666999999999999999999999999999999999 999999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHH-----HHHHHHHHHHHC--CCCc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GCEP 221 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~-----~~~~i~~~l~~~--gl~~ 221 (347)
. .....++.++| ++|++.++..++.+|+.++.... .... ....+.++++.+ |++.
T Consensus 81 ~----~~~~~~~~i~~-----------~~q~~~l~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~ 142 (226)
T cd03248 81 Y----EHKYLHSKVSL-----------VGQEPVLFARSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDT 142 (226)
T ss_pred c----CHHHHHhhEEE-----------EecccHHHhhhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccc
Confidence 0 00011122344 44444455456777776543211 1111 112245677777 6766
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVV 277 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIii 277 (347)
..++++.+|||||+||++||||| ||||++||. +.|+|++
T Consensus 143 -----------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~ 205 (226)
T cd03248 143 -----------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVI 205 (226)
T ss_pred -----------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34788999999999999999999 999999873 6899999
Q ss_pred ec--hHHHhcccEEEEEeeCCeE
Q 019048 278 TH--GDLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~i 298 (347)
|| +.+ ..||++++ |++|++
T Consensus 206 sh~~~~~-~~~d~i~~-l~~g~i 226 (226)
T cd03248 206 AHRLSTV-ERADQILV-LDGGRI 226 (226)
T ss_pred ECCHHHH-HhCCEEEE-ecCCcC
Confidence 99 455 45999975 999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=294.27 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=148.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++|++++|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~---~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~~ 71 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRFA 71 (501)
T ss_pred ceEEEeeeEEEECC---EEE---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCC
Confidence 58999999999964 234 666999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh--ccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
......++.++|++|+...+... ++.+|+.++... ....+....++++.++++.+++..
T Consensus 72 ---~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 132 (501)
T PRK11288 72 ---STTAALAAGVAIIYQELHLVPEM----------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI------ 132 (501)
T ss_pred ---CHHHHHhCCEEEEEechhccCCC----------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC------
Confidence 01111234566777664433322 344444433210 011123455667889999999976
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+||||||||++||||| ||||++||. |+|||+||| +
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 133 -----------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred -----------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34788999999999999999999 999999984 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
.+..+||++++ |++|+++..++.
T Consensus 202 ~~~~~~d~i~~-l~~G~i~~~~~~ 224 (501)
T PRK11288 202 EIFALCDAITV-FKDGRYVATFDD 224 (501)
T ss_pred HHHHhCCEEEE-EECCEEEeecCc
Confidence 78899999975 999999977654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.09 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=172.5
Q ss_pred CCcEEEeeeEEEeCCC------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC
Q 019048 69 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 142 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~ 142 (347)
+++++++|+++.|... ..+.+++. |||++++|+.+||+|.||||||||.|+|+|+.+ |++|+|.+|
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 4679999999988532 12456555 999999999999999999999999999999999 999999999
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
|+.+. +.++....+.+.+++||+.... ||.+ .+..-+-.++.....+......+++.+-|+.+||-++
T Consensus 74 ~~~L~----~~Dy~~R~k~IRMiFQDpnts~-----NPRl---~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd 141 (267)
T COG4167 74 DHPLH----FGDYSFRSKRIRMIFQDPNTSL-----NPRL---RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD 141 (267)
T ss_pred Ccccc----ccchHhhhhheeeeecCCcccc-----Chhh---hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc
Confidence 98875 3334444445566677655321 2222 2222222333333455667778889999999999764
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
..+-+|+.||-|||||||+|||| ||..++||. |.+.|.
T Consensus 142 ----------------han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 142 ----------------HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred ----------------ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 35889999999999999999999 999999873 999999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|+. ..+..++|.|+| |+.|+++|.|.+.++|..|.++-|+.++.+
T Consensus 206 V~QhlG~iKHi~D~viV-M~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 206 VTQHIGMIKHISDQVLV-MHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred EechhhHhhhhcccEEE-EecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 998 688999999975 999999999999999999999998887765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=293.22 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=148.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC--CCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p--~~G~I~~~g~~i~~ 148 (347)
+|+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~---~~i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCC---eEe---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 4899999999964 235 566999999999999999999999999999999998 7 79999999998752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--c-CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~-~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. ......++.++|++|+...+..+ ++.+|+.++.... . ........+++.++++.+++.+..
T Consensus 70 ~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (500)
T TIGR02633 70 S---NIRDTERAGIVIIHQELTLVPEL----------SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN-- 134 (500)
T ss_pred C---CHHHHHhCCEEEEeeccccCCCC----------cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc--
Confidence 1 01111233467777765433332 3334443332111 0 112334556788999999997621
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
.++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 --------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 135 --------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred --------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 2567899999999999999999 999999984 789999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+.+..+||++++ |++|+++..++++++
T Consensus 201 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 201 LNEVKAVCDTICV-IRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhCCEEEE-EeCCeEeeecCcccC
Confidence 578889999975 999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=294.31 Aligned_cols=192 Identities=14% Similarity=0.213 Sum_probs=147.2
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccc
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 153 (347)
++|++++|++ ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 1 ~~nl~~~~~~---~~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~--- 66 (491)
T PRK10982 1 MSNISKSFPG---VKA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKS--- 66 (491)
T ss_pred CCceEEEeCC---EEe---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCC---
Confidence 4789999964 234 666999999999999999999999999999999999 99999999999875111
Q ss_pred ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC--CChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 154 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~--~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.....++.++|++|+...+..+ ++.+|+.++...... .......+++.++++.+++..
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 126 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQR----------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI---------- 126 (491)
T ss_pred HHHHHhCCEEEEecccccccCC----------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC----------
Confidence 1111133466777765433322 334444433211111 123344567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+..
T Consensus 127 -------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 127 -------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred -------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 34888999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEeeCCeEeecCCcccc
Q 019048 285 LTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+||++++ |++|++++.|+++++
T Consensus 200 ~~d~i~~-l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 200 LCDEITI-LRDGQWIATQPLAGL 221 (491)
T ss_pred hCCEEEE-EECCEEEeecChhhC
Confidence 9999975 999999999988765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.05 Aligned_cols=220 Identities=10% Similarity=0.088 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhhhhhhhc--c-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRT--R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~--~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
......|+.++++..++... . ....|+++||+|+|+......+ |+|+||+|++|+++||+||||||||||
T Consensus 351 a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTL 427 (1466)
T PTZ00265 351 SLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGESGCGKSTI 427 (1466)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCCCCCHHHH
Confidence 34566688888765543211 0 1125999999999975322245 566999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEE-CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 120 VNRISKVFENDKFASERAQVTY-NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~-~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
+++|+|+++ |++|+|++ +|.++. .+.....+...++|+|++.++..++.+|+.++....
T Consensus 428 l~lL~gl~~-----p~~G~I~i~~g~~i~---------------~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~ 487 (1466)
T PTZ00265 428 LKLIERLYD-----PTEGDIIINDSHNLK---------------DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSL 487 (1466)
T ss_pred HHHHHHhcc-----CCCCeEEEeCCcchh---------------hCCHHHHHHhccEecccccchhccHHHHHHhcCCCc
Confidence 999999999 99999999 567764 111222333344455555555556666666542100
Q ss_pred cC--------------------------------------------------CChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 199 RR--------------------------------------------------SDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 199 ~~--------------------------------------------------~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. .......+++.++++.+++++.+...|+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~ 567 (1466)
T PTZ00265 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567 (1466)
T ss_pred cccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcc
Confidence 00 0001123568889999999876666777
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~ 281 (347)
++.+.|++. +.+||||||||++||||| ||||++||. |+|+|+||| -.
T Consensus 568 g~dT~vg~~------g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls 641 (1466)
T PTZ00265 568 KYETLVGSN------ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS 641 (1466)
T ss_pred ccCceeCCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 777777655 568999999999999999 999999873 689999999 34
Q ss_pred HHhcccEEEEEeeCC
Q 019048 282 LLSLTDRARIRTYLG 296 (347)
Q Consensus 282 ~~~~aDri~v~l~~G 296 (347)
..+.||+|++ |++|
T Consensus 642 ~i~~aD~Iiv-l~~g 655 (1466)
T PTZ00265 642 TIRYANTIFV-LSNR 655 (1466)
T ss_pred HHHhCCEEEE-EeCC
Confidence 4578999975 9886
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=293.49 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=145.6
Q ss_pred cEEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|+++||+|+|++.+ ...+ |+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~- 407 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFA---LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVS- 407 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCce---eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-
Confidence 599999999996421 1134 666999999999999999999999999999999999 99999999999986
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+...+.+...++++|++.++..++.+|.. .....+++.++++.+++++.+..+|+
T Consensus 408 --------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 408 --------------ADSRDDYRDLFSAIFADFHLFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred --------------CCCHHHHHhhCcEEccChhhhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccc
Confidence 223334444556677777777766666531 12334567889999999875433333
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~ 281 (347)
++.+ ...||||||||++||||+ ||||++||. ++|+|+||| ..
T Consensus 464 g~~t-----------~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 464 GFST-----------TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred ccCC-----------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 3332 257999999999999999 999999873 789999999 45
Q ss_pred HHhcccEEEEEeeCCeEeec
Q 019048 282 LLSLTDRARIRTYLGELLGI 301 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~ 301 (347)
....||+|++ |++|++++.
T Consensus 533 ~~~~~d~i~~-l~~G~i~~~ 551 (555)
T TIGR01194 533 YFELADQIIK-LAAGCIVKD 551 (555)
T ss_pred HHHhCCEEEE-EECCEEEEe
Confidence 6678999975 999999865
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=293.73 Aligned_cols=200 Identities=13% Similarity=0.133 Sum_probs=148.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~~g~~i~ 147 (347)
.++|+++||++.|+.+....+ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 457999999999952111234 566999999999999999999999999999999997 6 8999999998874
Q ss_pred CCccccccccCCCccceeecccc---ccccc-hhhhhHhhHHHHHhhhhhhhhh-cc---CCChHHHHHHHHHHHHHCCC
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELV-IR---RSDSSSLRNRMRCKAHKIGC 219 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~---~~~~~-v~qn~~~~~~~v~~~v~~~~~~-~~---~~~~~~~~~~i~~~l~~~gl 219 (347)
... .....++.++|++|+.. .+..+ +.+|+ .++... .. ..+....++++.++++.+++
T Consensus 329 ~~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 329 IRN---PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI-----------TLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCC---HHHHHHCCCEEeCcchhhCCCcCCCCHHHHh-----------hhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 111 11111334677777642 22222 44443 322110 00 01223445678899999999
Q ss_pred CcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE
Q 019048 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 274 (347)
Q Consensus 220 ~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti 274 (347)
... ..++++.+||||||||++||||| ||||++||. |+||
T Consensus 395 ~~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 395 KTA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred cCC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 631 24889999999999999999999 999999984 8999
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
|++|| +.+..+|||+++ |++|+++..|+++++
T Consensus 459 i~~sHd~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSELPEVLGLSDRVLV-MHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCHHHHHHhCCEEEE-EECCEEEEEeccccC
Confidence 99999 578899999975 999999998877654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=261.34 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 71 (221)
T cd03244 3 IEFKNVSLRYRPNL-PPV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKI-- 71 (221)
T ss_pred EEEEEEEEecCCCC-ccc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhC--
Confidence 78999999996432 134 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.... .++.++|++|+.. ++..++.+|+.... ... .+++.++++.+++.+.+...+.+
T Consensus 72 -~~~~-~~~~i~~~~q~~~-----------l~~~tv~enl~~~~----~~~----~~~~~~~~~~~~l~~~~~~l~~~-- 128 (221)
T cd03244 72 -GLHD-LRSRISIIPQDPV-----------LFSGTIRSNLDPFG----EYS----DEELWQALERVGLKEFVESLPGG-- 128 (221)
T ss_pred -CHHH-HhhhEEEECCCCc-----------cccchHHHHhCcCC----CCC----HHHHHHHHHHhCcHHHHHhcccc--
Confidence 0001 1234556655543 33334555554211 011 23445556666665421000000
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
-.+..++.+.+||+||+||++||||| ||||++||. +.|||++|| +.+. .
T Consensus 129 ----l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~ 203 (221)
T cd03244 129 ----LDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII-D 203 (221)
T ss_pred ----cccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h
Confidence 00122567899999999999999999 999999873 789999999 4554 4
Q ss_pred ccEEEEEeeCCeEeecCC
Q 019048 286 TDRARIRTYLGELLGIPP 303 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~ 303 (347)
||++++ |++|++++.|+
T Consensus 204 ~d~i~~-l~~g~~~~~~~ 220 (221)
T cd03244 204 SDRILV-LDKGRVVEFDS 220 (221)
T ss_pred CCEEEE-EECCeEEecCC
Confidence 999975 99999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=282.37 Aligned_cols=190 Identities=15% Similarity=0.216 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+.+++++++|.|+. +.+.++ |||+|++||+.||+|+||||||||+++|.|+|+ |++|+|+++|+.+...
T Consensus 3 ~~l~~~~itK~f~~---~~And~---V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~~ 71 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDD---VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRIK 71 (501)
T ss_pred ceEEEeccEEEcCC---EEecCc---eeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEeccC
Confidence 56999999999984 678555 999999999999999999999999999999999 9999999999987621
Q ss_pred ccccccccCCCccceeeccc-cccccchhhhhHhhHH-HHHhhhhhhhhh--ccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~-~~~~~~v~qn~~~~~~-~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
.+.+. +.-+++|+|++.+++. ++.+|+.++... ....+....++++.++.+++||+-+.
T Consensus 72 ---------------sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-- 134 (501)
T COG3845 72 ---------------SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-- 134 (501)
T ss_pred ---------------CHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc--
Confidence 12222 2224556666666665 778888877653 23446778889999999999997532
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
+.+..+||-|+||||.|-+|| ||||+-|-+ |+|||+|||
T Consensus 135 ---------------~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 135 ---------------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred ---------------cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999 999999743 999999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~ 303 (347)
+++.++|||+.| |..|+++...+
T Consensus 200 L~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 200 LKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999986 99999877655
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=294.40 Aligned_cols=198 Identities=15% Similarity=0.165 Sum_probs=145.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc--cCCCCCCCCcEEEECCE-----
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSS----- 144 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~--~~~~~~p~~G~I~~~g~----- 144 (347)
|+++|++++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEV---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECC---eEe---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 579999999964 234 66699999999999999999999999999999996 7 89999999732
Q ss_pred ------------------eCCC--Cccc--cc--cccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhcc
Q 019048 145 ------------------VGDG--TYFL--QE--YTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR 199 (347)
Q Consensus 145 ------------------~i~~--~~~~--~~--~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~ 199 (347)
++.. .... .. ....++.++|++|+. ..++.. ++.+|+.++....
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~----------~~~~~~~tv~~~l~~~~~~~- 138 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT----------FALYGDDTVLDNVLEALEEI- 138 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccc----------cccCCCCCHHHHHHHHHHHc-
Confidence 1100 0000 00 000122344555531 222221 4455555443221
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
..+..+.++++.++++.+||++ .+++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 139 GYEGKEAVGRAVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred CCCHHHHHHHHHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 2233455678889999999987 45889999999999999999999 999999884
Q ss_pred -----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 -----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 -----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
|+|||+||| +.+..+||++++ |++|+++..|++++++.
T Consensus 202 ~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 202 QTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW-LENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE-EeCCEEeeecCHHHHHH
Confidence 789999999 577789999975 99999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=293.79 Aligned_cols=206 Identities=13% Similarity=0.176 Sum_probs=148.6
Q ss_pred CCcEEEeeeEEEeCC--CceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC-CEe
Q 019048 69 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSV 145 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~--~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~-g~~ 145 (347)
.++|+++||+++|+. +....+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~~ 348 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGDE 348 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCCc
Confidence 468999999999953 111234 666999999999999999999999999999999999 999999996 532
Q ss_pred ---CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 146 ---i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
+.... .......++.++|++|+...+..+ ++.+|+.++... ..+....++++.++++.++|.+.
T Consensus 349 ~~~~~~~~-~~~~~~~~~~i~~v~q~~~l~~~~----------tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~ 415 (520)
T TIGR03269 349 WVDMTKPG-PDGRGRAKRYIGILHQEYDLYPHR----------TVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEE 415 (520)
T ss_pred cccccccc-hhhHHHHhhhEEEEccCcccCCCC----------cHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCc
Confidence 21000 000001123456777764433222 333444332111 11223345678889999999741
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
.. ..++++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 416 ~~------------~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 483 (520)
T TIGR03269 416 KA------------EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 (520)
T ss_pred cc------------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 00 0035889999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
||| +.+..+|||+++ |++|++++.|++++++
T Consensus 484 vsHd~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 484 VSHDMDFVLDVCDRAAL-MRDGKIVKIGDPEEIV 516 (520)
T ss_pred EeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHH
Confidence 999 578889999975 9999999999887764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=261.22 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=142.3
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+.++|++++|+..+ ...+ |+++||+|++||+++|+||||||||||+|+|+|+++... |++|+|.++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~-- 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRK-- 75 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECC--
Confidence 467999999996431 1345 566999999999999999999999999999999986222 58999999998864
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH-HHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC-KAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~-~l~~~gl~~~~~~~~ 227 (347)
. ...++.++|++|+...+..+ +.+|+.+.... .............++.+ +++.+++.+
T Consensus 76 ----~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 135 (226)
T cd03234 76 ----P-DQFQKCVAYVRQDDILLPGLTVRETLTYTAIL---------RLPRKSSDAIRKKRVEDVLLRDLALTR------ 135 (226)
T ss_pred ----h-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHh---------hcccccchHHHHHHHHHHHHHhhcchh------
Confidence 1 11244567777776555443 55554432110 00000111222234455 788888876
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEech--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH~-- 280 (347)
+.++.+.+|||||+||++||||| ||||++||. +.|+|++||+
T Consensus 136 -----------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~ 204 (226)
T cd03234 136 -----------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPR 204 (226)
T ss_pred -----------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 45788999999999999999999 999999983 7899999992
Q ss_pred -HHHhcccEEEEEeeCCeEeecC
Q 019048 281 -DLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 281 -~~~~~aDri~v~l~~G~iv~~g 302 (347)
.+..+||++++ |++|++++.|
T Consensus 205 ~~~~~~~d~i~~-l~~G~i~~~g 226 (226)
T cd03234 205 SDLFRLFDRILL-LSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCEEEE-EeCCEEEecC
Confidence 68899999975 9999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=290.76 Aligned_cols=181 Identities=12% Similarity=0.139 Sum_probs=139.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++|++|+|+.+.. + |+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 322 ~i~~~~v~f~y~~~~~--~---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~--- 388 (547)
T PRK10522 322 TLELRNVTFAYQDNGF--S---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVT--- 388 (547)
T ss_pred eEEEEEEEEEeCCCCe--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC---
Confidence 5999999999974333 4 666999999999999999999999999999999999 99999999999876
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.+...+.+...++++|++.++..++.+|- .....+.+.++++.+++.....
T Consensus 389 ------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-----------~~~~~~~~~~~~~~~~l~~~~~------ 439 (547)
T PRK10522 389 ------------AEQPEDYRKLFSAVFTDFHLFDQLLGPEG-----------KPANPALVEKWLERLKMAHKLE------ 439 (547)
T ss_pred ------------CCCHHHHhhheEEEecChhHHHHhhcccc-----------CchHHHHHHHHHHHcCCchhhh------
Confidence 12222333344556666666666655440 1123445677888888876320
Q ss_pred eeeechhhhhcc--CCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hH
Q 019048 231 IFVVDGLAVLKS--MEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 281 (347)
Q Consensus 231 ~~vvd~~~~~~~--~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~ 281 (347)
..+. ...+||||||||++||||+ ||||++||. ++|+|+||| ..
T Consensus 440 --------~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 440 --------LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred --------ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 0011 1468999999999999999 999999873 689999999 46
Q ss_pred HHhcccEEEEEeeCCeEeecC
Q 019048 282 LLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g 302 (347)
..+.||+|++ |++|++++..
T Consensus 512 ~~~~~d~i~~-l~~G~i~e~~ 531 (547)
T PRK10522 512 YFIHADRLLE-MRNGQLSELT 531 (547)
T ss_pred HHHhCCEEEE-EECCEEEEec
Confidence 6778999965 9999999873
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=292.39 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=145.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 263 ~~~l~~~~l~~~~~~---~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDRK---K-----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCCC---c-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 358999999997632 3 677999999999999999999999999999999999 999999999988741
Q ss_pred CccccccccCCCccceeeccc---cccccchhhhhHhhHHHHHhhhhhhhhh----c----cCCChHHHHHHHHHHHHHC
Q 019048 149 TYFLQEYTIPRGSNSFSLYDT---RSLSDDASDNINMIKLWIMEGVRHGELV----I----RRSDSSSLRNRMRCKAHKI 217 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~---~~~~~~v~qn~~~~~~~v~~~v~~~~~~----~----~~~~~~~~~~~i~~~l~~~ 217 (347)
.. .....++.++|++|+. ..+..+ ++.+|+.++... . ........++++.++++.+
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (510)
T PRK09700 330 RS---PLDAVKKGMAYITESRRDNGFFPNF----------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396 (510)
T ss_pred CC---HHHHHHCCcEEccCccccCCCcCCC----------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhc
Confidence 10 1011123467777763 122222 233333332110 0 0011223345678899999
Q ss_pred CCC-cccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C
Q 019048 218 GCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 271 (347)
Q Consensus 218 gl~-~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 271 (347)
++. + ..++++.+||||||||++||||| ||||++||. |
T Consensus 397 ~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 397 ALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred CCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 996 4 34889999999999999999999 999999984 8
Q ss_pred CeEEEEec--hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 272 ~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
.|||++|| +.+..+|||+++ |++|++++.++..+
T Consensus 460 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 495 (510)
T PRK09700 460 KVILMVSSELPEIITVCDRIAV-FCEGRLTQILTNRD 495 (510)
T ss_pred CEEEEEcCCHHHHHhhCCEEEE-EECCEEEEEecCcc
Confidence 89999999 578899999975 99999998876633
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=267.64 Aligned_cols=201 Identities=14% Similarity=0.065 Sum_probs=138.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++|++++|+... ..+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 18 ~~i~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~~ 88 (257)
T cd03288 18 GEIKIHDLCVRYENNL-KPV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDISKL 88 (257)
T ss_pred ceEEEEEEEEEeCCCC-Ccc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhhhC
Confidence 5699999999996431 124 677999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. ...++.++|++|+. .++..++.+|+..... .. .+.+.++++.+++...+...+++
T Consensus 89 ---~~-~~~~~~i~~v~q~~-----------~l~~~tv~~nl~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~~ 145 (257)
T cd03288 89 ---PL-HTLRSRLSIILQDP-----------ILFSGSIRFNLDPECK----CT----DDRLWEALEIAQLKNMVKSLPGG 145 (257)
T ss_pred ---CH-HHHhhhEEEECCCC-----------cccccHHHHhcCcCCC----CC----HHHHHHHHHHhCcHHHHhhcccc
Confidence 00 01123345555543 3333344455432110 00 11122233333332211000001
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
+.. ..+..+.+||+||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 146 l~~------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 219 (257)
T cd03288 146 LDA------VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL 219 (257)
T ss_pred cCc------EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH
Confidence 100 23567789999999999999999 999999873 799999999 4444
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.|||+++ |++|++++.|+++++...
T Consensus 220 -~~dri~~-l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 220 -DADLVLV-LSRGILVECDTPENLLAQ 244 (257)
T ss_pred -hCCEEEE-EECCEEEEeCCHHHHHhc
Confidence 4999975 999999999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=258.86 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=133.9
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
+.++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~---~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGE---FWA---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCC---eEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 778889988875 234 667999999999999999999999999999999999 999999999987530
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.. . +..++. ...+.+|+.+ +.... .......++++.++++.+++++
T Consensus 89 ~~------~--~~~~~~----~~tv~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 LG------L--GGGFNP----ELTGRENIYL-----------NGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred hc------c--cccCCC----CCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0 011110 0113444432 21111 1123344566788899999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
.+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999983 689999999 57788
Q ss_pred cccEEEEEeeCCeEeecC
Q 019048 285 LTDRARIRTYLGELLGIP 302 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g 302 (347)
+||++++ |++|++++.|
T Consensus 208 ~~d~i~~-l~~G~i~~~g 224 (224)
T cd03220 208 LCDRALV-LEKGKIRFDG 224 (224)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999975 9999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=263.96 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=128.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecc-ccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD-TRS 171 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~-~~~ 171 (347)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.. .....++.++|++++ ...
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~-----~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK-----RRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc-----cchhhcccEEEEcCCcccc
Confidence 566999999999999999999999999999999999 999999999987531 011123345666533 222
Q ss_pred cccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 172 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 172 ~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
+..+ +.++..+ ..... ........+++.++++.+++++ ..++++.+||||
T Consensus 107 ~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G 157 (236)
T cd03267 107 WWDLPVIDSFYL-----------LAAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLG 157 (236)
T ss_pred CCCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 2222 3444332 21111 1223445566788999999986 458889999999
Q ss_pred HHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecC
Q 019048 251 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 251 qrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g 302 (347)
||||++||||| ||||++||. +.|||++|| +.+..+||++++ |++|++++.|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~-l~~G~i~~~g 236 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV-IDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE-EeCCEEEecC
Confidence 99999999999 999999873 689999999 467889999975 9999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=255.66 Aligned_cols=179 Identities=19% Similarity=0.187 Sum_probs=131.4
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccc
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 153 (347)
++||++.|++ ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 1 i~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 1 LKNISKKFGD---KII---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred CcceEEEECC---EEE---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhh
Confidence 4799999974 234 666999999999999999999999999999999999 99999999998853100000
Q ss_pred ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeee
Q 019048 154 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 233 (347)
Q Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~v 233 (347)
.....++.++|++|+...+... ++.+|+.++... .........+++.++++.+++++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~----------t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------------ 126 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIENE----------TVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNL------------ 126 (206)
T ss_pred HHHHHHhCeeEEecchhhccCC----------cHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchh------------
Confidence 0111233456666654433322 344444432221 11223445667889999999976
Q ss_pred echhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhccc
Q 019048 234 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 287 (347)
Q Consensus 234 vd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aD 287 (347)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| .....+||
T Consensus 127 -----~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 201 (206)
T TIGR03608 127 -----KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 (206)
T ss_pred -----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 45888999999999999999999 999999973 789999999 33456899
Q ss_pred EEEE
Q 019048 288 RARI 291 (347)
Q Consensus 288 ri~v 291 (347)
++++
T Consensus 202 ~i~~ 205 (206)
T TIGR03608 202 RVIE 205 (206)
T ss_pred EEEe
Confidence 9954
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=260.61 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=140.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+|+++||++.|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVEDK---AI---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 48999999999742 34 6669999999999999999999999999999999 46 899999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. ......+..++|++|+...+... .+ ..+...+.+++..... ..........+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~~i~~~~q~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~------ 136 (248)
T PRK09580 70 L---SPEDRAGEGIFMAFQYPVEIPGV--SN-QFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKMPED------ 136 (248)
T ss_pred C---CHHHHhhcceEEEecCchhccch--hH-HHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCCChh------
Confidence 1 01111123467777765433221 00 1111111122211000 0001122345667788999999642
Q ss_pred eeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++.+. +||||||||++||||| ||||++||. ++|||++|| +
T Consensus 137 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 137 ----------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred ----------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2356664 8999999999999999 999999883 789999999 4
Q ss_pred HHHhc-ccEEEEEeeCCeEeecCCccc
Q 019048 281 DLLSL-TDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 281 ~~~~~-aDri~v~l~~G~iv~~g~~~~ 306 (347)
.+..+ ||++++ |++|++++.|+++.
T Consensus 207 ~~~~~~~d~i~~-l~~g~i~~~g~~~~ 232 (248)
T PRK09580 207 ILDYIKPDYVHV-LYQGRIVKSGDFTL 232 (248)
T ss_pred HHHhhhCCEEEE-EECCeEEEeCCHHH
Confidence 56665 899965 99999999988753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=260.95 Aligned_cols=190 Identities=12% Similarity=0.197 Sum_probs=161.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|++++|+++|++ ..+++| +||++++|++++++|||||||||++|+|.|+++ |++|.|.++|.++.
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~---isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~--- 67 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDN---ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLS--- 67 (300)
T ss_pred ceEEecchhccCc---eeeecc---eeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchh---
Confidence 5899999999987 456555 999999999999999999999999999999999 99999999999875
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
...+.++||.+.+...+..+ |.+.+.++.. +.++++.++++++..||+++++..
T Consensus 68 -----~~~~~rIGyLPEERGLy~k~tv~dql~yla~------------LkGm~~~e~~~~~~~wLer~~i~~-------- 122 (300)
T COG4152 68 -----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAE------------LKGMPKAEIQKKLQAWLERLEIVG-------- 122 (300)
T ss_pred -----hhhhhhcccChhhhccCccCcHHHHHHHHHH------------hcCCcHHHHHHHHHHHHHhccccc--------
Confidence 11233578888877666555 4444433321 346778999999999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
...+++.+||.|++|++.+..|+ |||+||||+ |.|||++|| ..+
T Consensus 123 ---------~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 123 ---------KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ---------cccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 34888999999999999999988 999999985 999999999 689
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.++||++++ |++|+.|-.|+.+++-.
T Consensus 194 EeLCD~llm-L~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLLM-LKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhhe-ecCCceEEeccHHHHHH
Confidence 999999975 99999999999887765
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.66 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=140.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++..
T Consensus 3 ~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQR---RV---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECCc---eE---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 479999999999742 24 677999999999999999999999999999999999 999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.++|++|+...+..+ ..++.+++.... . ...+++.++++.+++.+
T Consensus 68 -----------~i~~v~q~~~~~~~l--------~~~~~~~~~~~~----~----~~~~~~~~~l~~~gl~~-------- 112 (251)
T PRK09544 68 -----------RIGYVPQKLYLDTTL--------PLTVNRFLRLRP----G----TKKEDILPALKRVQAGH-------- 112 (251)
T ss_pred -----------CEEEecccccccccc--------ChhHHHHHhccc----c----ccHHHHHHHHHHcCChH--------
Confidence 246777764322110 012223322110 0 11345678899999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
..++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 113 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 113 ---------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred ---------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999873 689999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+||++++ |++ ++++.|++++++..
T Consensus 184 i~~~~d~i~~-l~~-~i~~~g~~~~~~~~ 210 (251)
T PRK09544 184 VMAKTDEVLC-LNH-HICCSGTPEVVSLH 210 (251)
T ss_pred HHHhCCEEEE-ECC-ceEeeCCHHHHhCC
Confidence 7899999975 864 79999999888654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=251.42 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=121.8
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
+++|++++|+. . .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~-~--~~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~----- 64 (180)
T cd03214 1 EVENLSVGYGG-R--TV---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA----- 64 (180)
T ss_pred CeeEEEEEECC-e--ee---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-----
Confidence 47899999974 2 34 666999999999999999999999999999999999 99999999998764
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
.+.....+...++++| +++.+|+.+
T Consensus 65 ----------~~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 65 ----------SLSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred ----------cCCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 1111111111111111 677788876
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHh
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~ 284 (347)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34788999999999999999999 999999873 579999999 56778
Q ss_pred cccEEEEEeeCCeEeecC
Q 019048 285 LTDRARIRTYLGELLGIP 302 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g 302 (347)
+||++++ |++|++++.|
T Consensus 164 ~~d~~~~-l~~g~i~~~~ 180 (180)
T cd03214 164 YADRVIL-LKDGRIVAQG 180 (180)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999975 9999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=251.52 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=150.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
++++++.+.-++ . .+ |+++||++++||+++|+||||||||||+|+++.|.+ |++|.++|.|++++
T Consensus 4 le~kq~~y~a~~-a--~i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs---- 68 (223)
T COG4619 4 LELKQVGYLAGD-A--KI---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVS---- 68 (223)
T ss_pred hHHHHHHhhcCC-C--ee---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcccc----
Confidence 455666433332 2 34 666999999999999999999999999999999999 99999999999987
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.+.+...|....|+.|.+.++..+|.+|+.++...+.... .+..+..++.++++++.
T Consensus 69 -----------~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~--------- 125 (223)
T COG4619 69 -----------TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDS--------- 125 (223)
T ss_pred -----------ccChHHHHHHHHHHHcCccccccchhhccccchHHhccCC---ChHHHHHHHHHcCCchh---------
Confidence 3455556666677788888888888889888877543322 45567789999999875
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
++++...+||||++||++|+|.| |||||+||+ ..++++||| +.+.
T Consensus 126 -------~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 126 -------ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198 (223)
T ss_pred -------hhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh
Confidence 46999999999999999999999 999999984 789999999 5778
Q ss_pred hcccEEEEEeeCCeEee
Q 019048 284 SLTDRARIRTYLGELLG 300 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~ 300 (347)
+.+|+++ .+..|.+=+
T Consensus 199 rha~k~i-tl~~G~~~~ 214 (223)
T COG4619 199 RHADKVI-TLQPGHAGE 214 (223)
T ss_pred hhhheEE-EeccCcccc
Confidence 9999995 688887643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=320.27 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=157.9
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||+++|+.+. ..+ |+|+||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.++.
T Consensus 1217 ~I~f~nVs~~Y~~~~-~~v---L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~--- 1283 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG-RAV---LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN--- 1283 (1490)
T ss_pred eEEEEEEEEEeCCCC-cce---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc---
Confidence 599999999996532 234 666999999999999999999999999999999986 5799999999986
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.+...+.|...++|+|++.++..++.+|+.... ....+++.++++.+++.+.+..+|+++
T Consensus 1284 ------------~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1284 ------------SVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred ------------cCCHHHHHhceEEEeCCCccCccCHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 233334444444455555555555556653110 112456888999999988777778888
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
.+.|.+. ...||||||||++||||| ||||++||. ++|||+||| -.....
T Consensus 1344 dt~v~e~------G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1344 DFVLVDG------GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred ccccccC------CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 8888765 347999999999999999 999999983 899999999 455566
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||||++ |++|++++.|+|++++.
T Consensus 1418 ~DrIlv-L~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1418 CQQFLV-IEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCEEEE-EECCEEEEeCCHHHHHc
Confidence 999975 99999999999999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=265.04 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=140.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
++++||++. . . |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|+++....
T Consensus 1 ~~~~~l~~~----~-~-----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~~~~- 63 (248)
T PRK03695 1 MQLNDVAVS----T-R-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLEAWS- 63 (248)
T ss_pred Ccccccchh----c-e-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecCcCC-
Confidence 357888874 1 3 677999999999999999999999999999999986 5 899999999875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. .. .++.++|++|+...+... ++.+|+.+.... ........+++.++++.+++.+
T Consensus 64 ~--~~-~~~~i~~v~q~~~~~~~~----------tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~---------- 118 (248)
T PRK03695 64 A--AE-LARHRAYLSQQQTPPFAM----------PVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD---------- 118 (248)
T ss_pred H--HH-HhhheEEecccCccCCCc----------cHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh----------
Confidence 0 00 112345666654322211 344444433211 1122344567888999999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh----------------chhccCCCC----------------CCeEEEEec
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tiIiiTH 279 (347)
..++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH 191 (248)
T PRK03695 119 -------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191 (248)
T ss_pred -------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45889999999999999999876 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+.++||++++ |++|++++.|++++++.
T Consensus 192 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 192 DLNHTLRHADRVWL-LKQGKLLASGRRDEVLT 222 (248)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCHHHHhC
Confidence 568899999975 99999999998877754
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=263.15 Aligned_cols=177 Identities=20% Similarity=0.319 Sum_probs=144.5
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccccc
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 174 (347)
+++|+++...++||.|+||||||||+|+|+|+.+ |++|.|.+||+-+......-.....++.+||+|||.+.|..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 4899998867999999999999999999999999 99999999998653111100111235667888888877766
Q ss_pred c-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHH
Q 019048 175 D-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253 (347)
Q Consensus 175 ~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQ 253 (347)
| |..|+.+ |... .......++...+|+.+ +++++|..|||||||
T Consensus 91 ~tVrgNL~Y-----------G~~~-------~~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQ 135 (352)
T COG4148 91 YTVRGNLRY-----------GMWK-------SMRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQ 135 (352)
T ss_pred eEEecchhh-----------hhcc-------cchHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhh
Confidence 6 5555543 3321 13345667888999999 789999999999999
Q ss_pred HHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcc
Q 019048 254 NQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 254 Rv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 305 (347)
||+|+||| |||.++||. +..|++||| ++++++||+++ +|++|++.+.|+.+
T Consensus 136 RVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e 214 (352)
T COG4148 136 RVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLE 214 (352)
T ss_pred HHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHH
Confidence 99999999 999999983 889999999 79999999996 49999999999999
Q ss_pred cccCCCC
Q 019048 306 QIFDIPE 312 (347)
Q Consensus 306 ~l~~~~~ 312 (347)
+++..+.
T Consensus 215 ~v~~~~~ 221 (352)
T COG4148 215 EVWGSPD 221 (352)
T ss_pred HHhcCcc
Confidence 9998874
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=254.74 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=135.5
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+++|++++|+.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 8 APPLLAAHALAFSRNEE---PV---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred CcceEEEeeEEEecCCc---ee---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 34689999999999752 34 666999999999999999999999999999999999 99999999998875
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. .. .++.++|++|+...+... ++.+|+.+..... . ....+.+.++++.+++.+
T Consensus 77 ~------~~-~~~~i~~~~q~~~~~~~~----------t~~e~l~~~~~~~-~---~~~~~~~~~~l~~~~l~~------ 129 (214)
T PRK13543 77 R------GD-RSRFMAYLGHLPGLKADL----------STLENLHFLCGLH-G---RRAKQMPGSALAIVGLAG------ 129 (214)
T ss_pred c------hh-hhhceEEeecCcccccCC----------cHHHHHHHHHHhc-C---CcHHHHHHHHHHHcCChh------
Confidence 1 11 122356666654333222 2334433221111 1 112345678899999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
..++++.+||||||||++||||+ ||||++||. |.|+|++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 130 -----------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred -----------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 45888999999999999999999 999999873 799999999 5
Q ss_pred HHHhcccEEEEEeeC
Q 019048 281 DLLSLTDRARIRTYL 295 (347)
Q Consensus 281 ~~~~~aDri~v~l~~ 295 (347)
++..+||++++ +..
T Consensus 199 ~~~~~~~~i~~-l~~ 212 (214)
T PRK13543 199 AAPPVRTRMLT-LEA 212 (214)
T ss_pred hhhhhcceEEE-Eee
Confidence 78899999965 653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=252.65 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=129.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 5 GEIEVENLSVRYAPDL-PPV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDISTI 75 (207)
T ss_pred CeEEEEEEEEEeCCCC-ccc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHHC
Confidence 4699999999997432 134 666999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. ...++.++|++|+... +..++.+|+.+.. ... .+.+.++++ +
T Consensus 76 ---~~-~~~~~~i~~v~q~~~~-----------~~~tv~~~l~~~~----~~~----~~~~~~~l~---~---------- 119 (207)
T cd03369 76 ---PL-EDLRSSLTIIPQDPTL-----------FSGTIRSNLDPFD----EYS----DEEIYGALR---V---------- 119 (207)
T ss_pred ---CH-HHHHhhEEEEecCCcc-----------cCccHHHHhcccC----CCC----HHHHHHHhh---c----------
Confidence 00 0113345666666432 2224445543211 011 122333333 1
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 456889999999999999999 999999873 789999999 4554
Q ss_pred hcccEEEEEeeCCeEeecCCc
Q 019048 284 SLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~ 304 (347)
. ||++++ |++|++++.|++
T Consensus 189 ~-~d~v~~-l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKILV-MDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEEE-EECCEEEecCCC
Confidence 4 999975 999999988753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=287.74 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=155.2
Q ss_pred CcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
++|+++|++++|+.+. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 5799999999996421 1234 666999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....+.....++.++|++|+...+... +.+|+.+. ... ......+.++++.++++.+||.+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~-----------~~~-~~~~~~~~~~~~~~~l~~lgl~~------ 136 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVP-----------AVY-AGLERKQRLLRAQELLQRLGLED------ 136 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHH-----------HHH-cCCCHHHHHHHHHHHHHHCCChh------
Confidence 111111112244567888876555443 45554431 110 11223455667889999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~ 281 (347)
..++.+.+||+||+||++||||| ||||++||. +.|+|++|| ..
T Consensus 137 -----------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 137 -----------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 45889999999999999999999 999999883 799999999 34
Q ss_pred HHhcccEEEEEeeCCeEeecCCccccc
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
....|||+++ |++|++++.|++++..
T Consensus 206 ~~~~~d~i~~-l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 206 VAAQAERVIE-IRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhCCEEEE-EECCEEEeecCccccc
Confidence 4457999975 9999999999999886
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=252.45 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=130.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~---~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~- 68 (204)
T PRK13538 1 MLEARNLACERDE---RIL---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQ- 68 (204)
T ss_pred CeEEEEEEEEECC---EEE---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccc-
Confidence 5899999999974 235 566999999999999999999999999999999999 9999999999887411
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++++...+... ++.+|+.+...... ....+++.++++.+|+.+
T Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~----------tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~--------- 121 (204)
T PRK13538 69 ----RDEYHQDLLYLGHQPGIKTEL----------TALENLRFYQRLHG----PGDDEALWEALAQVGLAG--------- 121 (204)
T ss_pred ----hHHhhhheEEeCCccccCcCC----------cHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH---------
Confidence 011123445666554332222 33444443322111 123456788999999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. +.|+|++|| .++.
T Consensus 122 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 122 --------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 45888999999999999999999 999999873 789999999 5666
Q ss_pred hcccEEE
Q 019048 284 SLTDRAR 290 (347)
Q Consensus 284 ~~aDri~ 290 (347)
.+.+|++
T Consensus 194 ~~~~~~~ 200 (204)
T PRK13538 194 SDKVRKL 200 (204)
T ss_pred cCCceEE
Confidence 7777884
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=284.73 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=146.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~~g~~i~ 147 (347)
..+|+++|+++.|+.+....+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVD 326 (500)
T ss_pred CceEEEeCCcccccccccccc---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECC
Confidence 357999999999942111234 666999999999999999999999999999999998 7 7999999998874
Q ss_pred CCccccccccCCCccceeecccc---ccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~---~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
... .....++.++|++|+.. .+..+ +.+|+.+... .... ..........++++.++++.+++...
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~- 395 (500)
T TIGR02633 327 IRN---PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVL---KSFC----FKMRIDAAAELQIIGSAIQRLKVKTA- 395 (500)
T ss_pred CCC---HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhh---hhhc----cCCcCCHHHHHHHHHHHHHhcCccCC-
Confidence 110 11112335677777752 22222 4444432110 0000 00011223345678899999999642
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 396 ---------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 396 ---------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred ---------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 24789999999999999999999 999999984 88999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
| +.+..+||++++ |++|+++...+.
T Consensus 461 Hd~~~~~~~~d~v~~-l~~G~i~~~~~~ 487 (500)
T TIGR02633 461 SELAEVLGLSDRVLV-IGEGKLKGDFVN 487 (500)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEEEcc
Confidence 9 578899999975 999999987654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=253.02 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=131.8
Q ss_pred cEEEeeeEEEeCC----CceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC--E
Q 019048 71 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 144 (347)
Q Consensus 71 ~l~i~nl~~~y~~----~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g--~ 144 (347)
||+++|+++.|+. +....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 5899999999963 111245 566999999999999999999999999999999999 9999999984 2
Q ss_pred --eCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 145 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 145 --~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
++............++.++|++|+...+..+ ++.+++.++.... ........+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~ 141 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRV----------SALEVVAEPLLER-GVPREAARARARELLARLNIPER 141 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCc----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchh
Confidence 3320000000011123456777665433322 2333333322111 12233445678889999999752
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIii 277 (347)
..++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 142 ----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v 205 (224)
T TIGR02324 142 ----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGI 205 (224)
T ss_pred ----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 23678999999999999999999 999999873 7899999
Q ss_pred ec--hHHHhcccEEEE
Q 019048 278 TH--GDLLSLTDRARI 291 (347)
Q Consensus 278 TH--~~~~~~aDri~v 291 (347)
|| +.+..+||+++.
T Consensus 206 sH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 206 FHDEEVRELVADRVMD 221 (224)
T ss_pred eCCHHHHHHhcceeEe
Confidence 99 456789999953
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=282.54 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=144.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 248 ~~~i~~~~l~~~~~-----~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----PS---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC-----cc---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 35799999998752 23 677999999999999999999999999999999999 999999999988752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.. .....++.++|++|+..... ++++.....+++.+++...............++.+.++++.+++...
T Consensus 315 ~~---~~~~~~~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 383 (491)
T PRK10982 315 HN---ANEAINHGFALVTEERRSTG--IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP------ 383 (491)
T ss_pred CC---HHHHHHCCCEEcCCchhhCC--cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC------
Confidence 11 11112334677777643110 11121111112223232111100111223445677889999999532
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 384 ----------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 384 ----------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred ----------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 24889999999999999999999 999999884 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCc
Q 019048 282 LLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
+..+|||+++ |++|+++..++.
T Consensus 454 ~~~~~d~v~~-l~~g~i~~~~~~ 475 (491)
T PRK10982 454 LLGITDRILV-MSNGLVAGIVDT 475 (491)
T ss_pred HHhhCCEEEE-EECCEEEEEEcc
Confidence 8899999975 999999976654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=283.57 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=145.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 255 ~~~l~~~~l~~~------~-----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 255 EVRLKVDNLSGP------G-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318 (501)
T ss_pred CcEEEEeCcccC------C-----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 357999999841 3 667999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeecccc---ccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 223 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~---~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~ 223 (347)
.. .....++.++|++|+.. .+..+ +.+|+.+..... . ............++++.++++.+++. +
T Consensus 319 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 387 (501)
T PRK10762 319 RS---PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY---F---SRAGGSLKHADEQQAVSDFIRLFNIKTP-- 387 (501)
T ss_pred CC---HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh---h---cccccccCHHHHHHHHHHHHHhcCCCCC--
Confidence 11 11112335677777742 22222 444433211000 0 00000012234456788999999995 4
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 388 ---------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivt 452 (501)
T PRK10762 388 ---------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452 (501)
T ss_pred ---------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEc
Confidence 24889999999999999999999 999999984 78999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
| +.+..+||++++ |++|+++..++++++
T Consensus 453 Hd~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 453 SEMPEVLGMSDRILV-MHEGRISGEFTREQA 482 (501)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEEeccccC
Confidence 9 578899999975 999999998887654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=276.51 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=144.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++||++.|+.+....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee-
Confidence 468999999999976432345 666999999999999999999999999999999999 99999999996521
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
+++ .......+ ++.+|+.+.... .........+++.++++.+++.+
T Consensus 90 -------------i~~---~~~l~~~l----------TV~EnL~l~~~~-~~~~~~e~~e~i~elLe~lgL~~------- 135 (549)
T PRK13545 90 -------------IAI---SSGLNGQL----------TGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGK------- 135 (549)
T ss_pred -------------EEe---ccccCCCC----------cHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHcCChh-------
Confidence 001 00001111 233333322111 11223445566778999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 136 ----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 136 ----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45889999999999999999999 999999883 789999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+||++++ |++|++++.|++++++..
T Consensus 206 i~~l~DrIiv-L~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 206 VKSFCTKALW-LHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhh
Confidence 7889999975 999999999999887654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=313.72 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=158.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+.|+++||++.|+.++ ..+ ++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y~~~~-k~a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSG-RPA---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIET 996 (2272)
T ss_pred CceEEEEeEEEEecCCC-ceE---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcc
Confidence 35799999999995322 235 666999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.....++.+++++|+...+..+ |.+++.++. .. +..+..+.++++.++++.+||++
T Consensus 997 -----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~-----------~l-kg~~~~~~~~~v~~lL~~vgL~~------ 1053 (2272)
T TIGR01257 997 -----NLDAVRQSLGMCPQHNILFHHLTVAEHILFYA-----------QL-KGRSWEEAQLEMEAMLEDTGLHH------ 1053 (2272)
T ss_pred -----hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHH-----------Hh-cCCCHHHHHHHHHHHHHHcCCch------
Confidence 1111244578888876555444 555554422 11 12233455677899999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 1054 -----------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1054 -----------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45899999999999999999999 999999984 899999999 67
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+|||+++ |++|+++..|++..+.+.
T Consensus 1123 a~~laDrI~i-L~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1123 ADLLGDRIAI-ISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHHHh
Confidence 8889999975 999999999998877543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=249.61 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=129.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.. .+ |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (201)
T cd03231 1 LEADELTCERDGR---AL---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDF--- 66 (201)
T ss_pred CEEEEEEEEeCCc---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 5799999999752 34 666999999999999999999999999999999999 999999999988641
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.....++.++|++|+...+... ++.+|+.+... . ...+++.++++.+++.+
T Consensus 67 --~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~---~----~~~~~~~~~l~~~~l~~---------- 117 (201)
T cd03231 67 --QRDSIARGLLYLGHAPGIKTTL----------SVLENLRFWHA---D----HSDEQVEEALARVGLNG---------- 117 (201)
T ss_pred --ccHHhhhheEEeccccccCCCc----------CHHHHHHhhcc---c----ccHHHHHHHHHHcCChh----------
Confidence 0011133456666543322111 34444433211 0 12456778899999986
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. |.|+|++|| .....
T Consensus 118 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 118 -------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred -------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 45788999999999999999999 999999873 789999999 46778
Q ss_pred cccEEEE
Q 019048 285 LTDRARI 291 (347)
Q Consensus 285 ~aDri~v 291 (347)
+++++++
T Consensus 191 ~~~~~~~ 197 (201)
T cd03231 191 AGARELD 197 (201)
T ss_pred ccceeEe
Confidence 9999953
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=309.73 Aligned_cols=197 Identities=10% Similarity=0.086 Sum_probs=159.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+|+++||++.|+.+. ..+ |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~-~~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS-SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCC-ceE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 35799999999997422 235 666999999999999999999999999999999999 999999999998741
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.....++.+||++|....+..+ +.|++.++.. .++.+....++.+.++++.++|.+
T Consensus 2006 -----~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~------------l~g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 -----NISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR------------LRGVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred -----hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH------------hcCCCHHHHHHHHHHHHHHcCCHH------
Confidence 1111244678888876555444 5565544321 112334455677888999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
.+++++.+||||||||++||+|| ||||+|||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999984 899999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
++..+|||+++ |++|+++..|+++++..
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHH
Confidence 88899999976 99999999999988744
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=244.92 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=115.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+... ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 69 (178)
T cd03247 1 LSINNVSFSYPEQE-QQV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSDL-- 69 (178)
T ss_pred CEEEEEEEEeCCCC-ccc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHHH--
Confidence 57899999996532 123 777999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. ...++.++|+ +|++.++..++.+|+
T Consensus 70 ~---~~~~~~i~~~-----------~q~~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 70 E---KALSSLISVL-----------NQRPYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred H---HHHHhhEEEE-----------ccCCeeecccHHHhh----------------------------------------
Confidence 0 0011223344 333332221221111
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
+.+|||||+||++||||| ||||++||. +.|+|++|| +.+ ..
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-EH 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 457999999999999999 999999873 789999999 455 46
Q ss_pred ccEEEEEeeCCeEeecC
Q 019048 286 TDRARIRTYLGELLGIP 302 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g 302 (347)
||++++ |++|++++.|
T Consensus 163 ~d~~~~-l~~g~i~~~~ 178 (178)
T cd03247 163 MDKILF-LENGKIIMQG 178 (178)
T ss_pred CCEEEE-EECCEEEecC
Confidence 999975 9999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=279.51 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=143.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++++++|+++. .+ ++++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++...
T Consensus 256 ~~l~~~~~~~~-------~~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 256 VRLRLDGLKGP-------GL---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR 320 (501)
T ss_pred cEEEEeccccC-------Cc---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC
Confidence 46899999732 13 667999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCccceeecccc---ccccchhhhhHhhHHHHHhhhhhhhhhcc---C--CChHHHHHHHHHHHHHCCCCc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELVIR---R--SDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~---~~~~~v~qn~~~~~~~v~~~v~~~~~~~~---~--~~~~~~~~~i~~~l~~~gl~~ 221 (347)
. .....++.++|++|+.. .+..+ ++.+|+.++..... . ......++.+.++++.+++..
T Consensus 321 ~---~~~~~~~~i~~~~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 S---PRDAIRAGIMLCPEDRKAEGIIPVH----------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred C---HHHHHhCCCEEcCcCHhhCCCcCCC----------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 1 11111334567777642 22212 33344333211000 0 112233456888999999952
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
. ..++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 388 ~----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 388 P----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred C----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 1 34889999999999999999999 999999883 889999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+|| +.+..+||++++ |++|++++.|+++++
T Consensus 452 vsHd~~~~~~~~d~i~~-l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 452 VSSDLPEVLGVADRIVV-MREGRIAGELAREQA 483 (501)
T ss_pred ECCCHHHHHhhCCEEEE-EECCEEEEEEccccC
Confidence 999 578899999975 999999999887643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=278.70 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=145.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|++++|++ . .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~i~~ls~~~~~-~--~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~----- 64 (530)
T PRK15064 1 MLSTANITMQFGA-K--PL---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNE----- 64 (530)
T ss_pred CEEEEEEEEEeCC-c--Ee---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-----
Confidence 5899999999974 2 34 666999999999999999999999999999999999 999999998731
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHH------hhhhhhhh---------------hccCCChHHHHH
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRHGEL---------------VIRRSDSSSLRN 208 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~------~~v~~~~~---------------~~~~~~~~~~~~ 208 (347)
.++|++|+...+..+ +.+++.+...... +.+. ... ..........++
T Consensus 65 ----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 65 ----------RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY-ALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh-cccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 246777776554444 6666543211000 0000 000 000000112345
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 270 (347)
++.++++.+|+.+.. .++++.+||||||||++||||| ||||++||.
T Consensus 134 ~~~~~l~~~gl~~~~----------------~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 197 (530)
T PRK15064 134 RAGELLLGVGIPEEQ----------------HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV 197 (530)
T ss_pred HHHHHHHhCCCChhH----------------hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 678899999997521 2567899999999999999999 999999984
Q ss_pred ----CCeEEEEec--hHHHhcccEEEEEeeCCeE-eecCCcccccC
Q 019048 271 ----DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFD 309 (347)
Q Consensus 271 ----g~tiIiiTH--~~~~~~aDri~v~l~~G~i-v~~g~~~~l~~ 309 (347)
|.|||+||| +.+..+||++++ |++|++ +..|++++++.
T Consensus 198 l~~~~~tiiivsHd~~~~~~~~d~i~~-l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 198 LNERNSTMIIISHDRHFLNSVCTHMAD-LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEEE-EeCCEEEEecCCHHHHHH
Confidence 899999999 578899999975 999999 47888877764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=246.94 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=127.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~---~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (198)
T TIGR01189 1 LAARNLACSRGE---RML---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQ-- 67 (198)
T ss_pred CEEEEEEEEECC---EEE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccc--
Confidence 578999999974 234 666999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
. ...++.++|.+|+...+... ++.+|+.+...... .. .+++.++++.+++.+
T Consensus 68 -~--~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~---~~--~~~~~~~l~~~~l~~---------- 119 (198)
T TIGR01189 68 -R--DEPHRNILYLGHLPGLKPEL----------SALENLHFWAAIHG---GA--QRTIEDALAAVGLTG---------- 119 (198)
T ss_pred -h--HHhhhheEEeccCcccccCC----------cHHHHHHHHHHHcC---Cc--HHHHHHHHHHcCCHH----------
Confidence 0 11123455666543322221 33444433221111 11 345778899999987
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEechHHHhcc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSLT 286 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH~~~~~~a 286 (347)
..++++.+||||||||++||||+ ||||++||. |.|+|++||+...-.|
T Consensus 120 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 120 -------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred -------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 45888999999999999999999 999999873 7899999996554556
Q ss_pred cEE
Q 019048 287 DRA 289 (347)
Q Consensus 287 Dri 289 (347)
+++
T Consensus 193 ~~~ 195 (198)
T TIGR01189 193 ARE 195 (198)
T ss_pred eEE
Confidence 777
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=253.15 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=139.0
Q ss_pred cEEEeeeEEEeCCC-----------------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCC
Q 019048 71 LTDAKNKILSYTPG-----------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133 (347)
Q Consensus 71 ~l~i~nl~~~y~~~-----------------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~ 133 (347)
-++++||++.|... ....+ |+++||+|++|++++|+||||||||||+++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~----- 75 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFA---LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS----- 75 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----
Confidence 37889999988431 11235 556999999999999999999999999999999999
Q ss_pred CCCcEEEECCEeCCCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH
Q 019048 134 SERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212 (347)
Q Consensus 134 p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~ 212 (347)
|++|+|.++|... +..+.......+ +.+|+ .++.... ........+.+.+
T Consensus 76 p~~G~I~~~g~~~-----------------~~~~~~~~~~~~tv~enl-----------~~~~~~~-~~~~~~~~~~~~~ 126 (264)
T PRK13546 76 PTVGKVDRNGEVS-----------------VIAISAGLSGQLTGIENI-----------EFKMLCM-GFKRKEIKAMTPK 126 (264)
T ss_pred CCceEEEECCEEe-----------------EEecccCCCCCCcHHHHH-----------HHHHHHc-CCCHHHHHHHHHH
Confidence 9999999998521 111111111111 33333 2211111 1223444556677
Q ss_pred HHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------
Q 019048 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 270 (347)
Q Consensus 213 ~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 270 (347)
+++.+++.+ ..++++.+|||||+||++||||| ||||++||.
T Consensus 127 ~l~~~~l~~-----------------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 127 IIEFSELGE-----------------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHHHcCCch-----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 888889877 45889999999999999999999 999999883
Q ss_pred ---CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ---g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|.|+|++|| ..+..+||++++ |++|++++.|++++++..
T Consensus 190 ~~~g~tiIiisH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 190 KEQNKTIFFVSHNLGQVRQFCTKIAW-IEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHCCCEEEEEcCCHHHHHHHcCEEEE-EECCEEEEeCCHHHHHHH
Confidence 789999999 567789999975 999999999998887654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=308.98 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHhhhhhhh--cc----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 46 DQRRRDAVFREVLQSYDQLR--TR----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~--~~----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
..+....|+.+++..++... .. ..+.|+++|++|+|+......+ |+|+||+|++|+.++|+||||||||||
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTL 659 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTGEGKTSL 659 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCCCCHHHH
Confidence 34456668888775443211 11 1235999999999964321234 666999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCC-cEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 120 VNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
+++|+|.++ |++ |+|.+.+ .++|+.|++..+.+ ++.+||.++..
T Consensus 660 l~lLlG~~~-----~~~GG~I~l~~-----------------~Iayv~Q~p~Lfng-----------TIreNI~fg~~-- 704 (1622)
T PLN03130 660 ISAMLGELP-----PRSDASVVIRG-----------------TVAYVPQVSWIFNA-----------TVRDNILFGSP-- 704 (1622)
T ss_pred HHHHHHhhc-----cCCCceEEEcC-----------------eEEEEcCccccCCC-----------CHHHHHhCCCc--
Confidence 999999999 999 8998644 23566666555544 45555554432
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
..+++..++++.++|.+.+..+|++..++|++++ .+||||||||++||||+ |||||+||
T Consensus 705 ------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G------~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 705 ------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERG------VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred ------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC------CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 1246678889999998888889999999998874 37999999999999999 99999998
Q ss_pred C----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. ++|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 773 ~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~-L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 773 AHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIIL-VHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEE-EeCCEEEEeCCHHHHHhc
Confidence 3 789999999 456677999965 999999999999988753
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=246.06 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=127.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|+++.|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~---~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGG---RVL---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECC---eEE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 5899999999974 234 666999999999999999999999999999999999 999999999987531
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . .++.++|++++...+... +.+|+.+ ..... .. ..+++.++++.+|+..
T Consensus 69 -~---~-~~~~~~~~~~~~~~~~~~tv~~~l~~-----------~~~~~-~~----~~~~~~~~l~~~~l~~-------- 119 (207)
T PRK13539 69 -P---D-VAEACHYLGHRNAMKPALTVAENLEF-----------WAAFL-GG----EELDIAAALEAVGLAP-------- 119 (207)
T ss_pred -h---h-hHhhcEEecCCCcCCCCCcHHHHHHH-----------HHHhc-CC----cHHHHHHHHHHcCCHH--------
Confidence 1 1 233456666544332222 4444432 11111 11 1234778999999976
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 120 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 120 ---------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred ---------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 45788999999999999999999 999999873 899999999 344
Q ss_pred HhcccEEEEEee
Q 019048 283 LSLTDRARIRTY 294 (347)
Q Consensus 283 ~~~aDri~v~l~ 294 (347)
.. |+++ .+.
T Consensus 191 ~~--~~~~-~~~ 199 (207)
T PRK13539 191 PG--AREL-DLG 199 (207)
T ss_pred cc--CcEE-eec
Confidence 44 8884 353
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=279.34 Aligned_cols=194 Identities=11% Similarity=0.077 Sum_probs=143.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++ . . |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 266 ~~~l~~~~l~~---~---~-----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTG---E---G-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCC---C---C-----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 45899999983 1 2 667999999999999999999999999999999999 999999999998752
Q ss_pred CccccccccCCCccceeecccc---ccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 223 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~---~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~ 223 (347)
.. .....++.++|++|+.. .+..+ +.++...... ..... .......++++.++++.+++. .
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~--------~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-- 395 (510)
T PRK15439 330 LS---TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH--------NRRGF-WIKPARENAVLERYRRALNIKFN-- 395 (510)
T ss_pred CC---HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh--------hhhcc-ccChHHHHHHHHHHHHHcCCCCC--
Confidence 11 11112335677777632 12221 3333321100 00000 011223345688899999997 4
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 396 ---------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 396 ---------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred ---------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 34889999999999999999999 999999884 88999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
| +.+..+||++++ |++|+++..|+++++.
T Consensus 461 Hd~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 461 SDLEEIEQMADRVLV-MHQGEISGALTGAAIN 491 (510)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEEEccccCC
Confidence 9 588899999975 9999999988776553
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=241.66 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+.+. ..+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 69 (173)
T cd03246 1 LEVENVSFRYPGAE-PPV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQW-- 69 (173)
T ss_pred CEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccC--
Confidence 57899999996432 124 667999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
... ..++.++|+ +|++.+++.++.+|
T Consensus 70 -~~~-~~~~~i~~~-----------~q~~~~~~~tv~~~----------------------------------------- 95 (173)
T cd03246 70 -DPN-ELGDHVGYL-----------PQDDELFSGSIAEN----------------------------------------- 95 (173)
T ss_pred -CHH-HHHhheEEE-----------CCCCccccCcHHHH-----------------------------------------
Confidence 000 011223333 44332221111110
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~ 285 (347)
+ |||||+||++||||| ||||++||. |+|+|++|| .....+
T Consensus 96 -------l-------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 96 -------I-------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred -------C-------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 1 999999999999999 999999883 789999999 333368
Q ss_pred ccEEEEEeeCCeE
Q 019048 286 TDRARIRTYLGEL 298 (347)
Q Consensus 286 aDri~v~l~~G~i 298 (347)
||++++ |++|++
T Consensus 162 ~d~v~~-l~~G~i 173 (173)
T cd03246 162 ADRILV-LEDGRV 173 (173)
T ss_pred CCEEEE-EECCCC
Confidence 999975 999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-33 Score=244.18 Aligned_cols=206 Identities=15% Similarity=0.204 Sum_probs=175.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC-EeCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g-~~i~~ 148 (347)
.+|+++||+++|++ ..++++ +||+|.+||.-+|||||||||||++-+|+|--+ |++|+++|+| .++.
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~---ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~- 71 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALND---LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLT- 71 (249)
T ss_pred ceEEEeceEEEEcc---eeeeee---eEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhc-
Confidence 57999999999976 567555 999999999999999999999999999999999 9999999999 7776
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHH---HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~---~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
..+++.+.|..+|..||.+.-|..+ |+||+.+... .++..+. .....+.+.++.++|...||.++
T Consensus 72 --~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~-------~r~~~~e~~ride~La~igL~~~-- 140 (249)
T COG4674 72 --KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF-------ARLRAEERRRIDELLATIGLGDE-- 140 (249)
T ss_pred --cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhh-------hhcChhHHHHHHHHHHHcccchh--
Confidence 4557778888999999999999888 9999987654 2322222 11234556789999999999984
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC---------------CCCeEEEEec-
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH- 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---------------~g~tiIiiTH- 279 (347)
.+.....||-||||++.|++.+ |||++|+- .+++|++|.|
T Consensus 141 ---------------~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHD 205 (249)
T COG4674 141 ---------------RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHD 205 (249)
T ss_pred ---------------hhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 4888999999999999999998 99999953 3899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 314 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~ 314 (347)
.++..+|++|.| |+.|.+..+|+.+++-.+|+.-
T Consensus 206 M~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~Vi 240 (249)
T COG4674 206 MGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPKVI 240 (249)
T ss_pred HHHHHHhhheeEE-EeccceeecccHHHhhcCcceE
Confidence 589999999987 9999999999999998877643
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=263.62 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=137.0
Q ss_pred EECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHH
Q 019048 108 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWI 187 (347)
Q Consensus 108 IvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v 187 (347)
|+||||||||||+++|+|+++ |++|+|.++|+++.. ....++.++|++|+...+..+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~------~~~~~~~i~~v~q~~~l~~~~----------tv 59 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN------VPPHLRHINMVFQSYALFPHM----------TV 59 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC------CCHHHCCEEEEecCccccCCC----------cH
Confidence 689999999999999999999 999999999998751 111123456666665444332 44
Q ss_pred HhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------
Q 019048 188 MEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------ 261 (347)
Q Consensus 188 ~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------ 261 (347)
.+|+.++.... .......++++.++++.++|.+ +.++++.+||||||||++|||||
T Consensus 60 ~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 60 EENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 45555443211 2233455667889999999987 56899999999999999999999
Q ss_pred ---chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 262 ---NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 262 ---DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
||||++||. |+|+|+||| +++..+||++++ |++|+++..|++++++..|...++..+
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI-MRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 999999873 789999999 578899999975 999999999999999998877766665
Q ss_pred HHH
Q 019048 320 LII 322 (347)
Q Consensus 320 ~~~ 322 (347)
+..
T Consensus 201 ~~~ 203 (325)
T TIGR01187 201 IGE 203 (325)
T ss_pred cCc
Confidence 553
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-32 Score=244.76 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=121.6
Q ss_pred EEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++||+++|+.... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g-~---- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG-S---- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC-E----
Confidence 579999999975320 124 667999999999999999999999999999999999 9999999998 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++|++|+...+ ..++.+|+.++... .. +...++++.+++...+...+.+
T Consensus 68 ------------i~~~~q~~~l~-----------~~t~~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~ 116 (204)
T cd03250 68 ------------IAYVSQEPWIQ-----------NGTIRENILFGKPF----DE----ERYEKVIKACALEPDLEILPDG 116 (204)
T ss_pred ------------EEEEecCchhc-----------cCcHHHHhccCCCc----CH----HHHHHHHHHcCcHHHHHhccCc
Confidence 25666665433 22444555443211 11 1222334444432211000000
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
. .+..++.+.+||+|||||++||||| ||||++||. +.|||++|| ..
T Consensus 117 ~------~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 117 D------LTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred c------cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 0 1123566889999999999999999 999999873 689999999 45
Q ss_pred HHhcccEEEEEeeCCe
Q 019048 282 LLSLTDRARIRTYLGE 297 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~ 297 (347)
+.. ||++++ |++|+
T Consensus 191 ~~~-~d~i~~-l~~G~ 204 (204)
T cd03250 191 LPH-ADQIVV-LDNGR 204 (204)
T ss_pred Hhh-CCEEEE-EeCCC
Confidence 555 999975 99884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-32 Score=278.01 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=146.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~~--~i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~---- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKK--QI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG---- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCC--ee---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 35899999999997222 34 666999999999999999999999999999999999 99999998741
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHH------hhhhh--hhh----------------hccCCCh
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRH--GEL----------------VIRRSDS 203 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~------~~v~~--~~~----------------~~~~~~~ 203 (347)
..++|++|+...+..+ +.+|+.+....+. ..... ... .......
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1347888887655444 6777654221100 00000 000 0000000
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 270 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 270 (347)
.+..+++.++++.+|+.. .++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred cchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 123456788899999953 2778999999999999999999 999999984
Q ss_pred ---------CCeEEEEec--hHHHhcccEEEEEeeCCeEe-ecCCcccccC
Q 019048 271 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 309 (347)
Q Consensus 271 ---------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 309 (347)
+.|||+||| +.+..+||++++ |++|+++ ..|+.+++..
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~-l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EeCCEEEEecCCHHHHHH
Confidence 569999999 578899999975 9999986 7788776543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-32 Score=277.30 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=141.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDNG---PL---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 479999999999742 34 666999999999999999999999999999999999 999999998732
Q ss_pred ccccccccCCCccceeecccc-ccc-cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~-~~~-~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.++|++|+.. .+. .+ +.+++..+ .. ....++++.++++.+++...
T Consensus 383 -----------~i~~~~q~~~~~~~~~~t~~~~~~~~---------------~~--~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 -----------NIGYYAQDHAYDFENDLTLFDWMSQW---------------RQ--EGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred -----------EEEEEcccccccCCCCCcHHHHHHHh---------------cc--CCccHHHHHHHHHHcCCChh----
Confidence 2467777653 121 12 33332110 00 01124567889999999531
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHH
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 282 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35889999999999999999999 999999984 569999999 578
Q ss_pred HhcccEEEEEeeCCeEe-ecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELL-GIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv-~~g~~~~l~~~ 310 (347)
..+||++++ |++|+++ ..|++.+++..
T Consensus 499 ~~~~d~i~~-l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRIIE-ITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEEE-EECCeEEEcCCCHHHHHHH
Confidence 889999975 9999998 77888776543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=243.48 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=119.3
Q ss_pred cEEEeeeEEEeCCCc---eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc--cCCCCCCCCcEEEECCEe
Q 019048 71 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV 145 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~---~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~--~~~~~~p~~G~I~~~g~~ 145 (347)
.|+++||+++|+... ...+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEe
Confidence 489999999996420 1234 66699999999999999999999999999999999 8 999999999998
Q ss_pred CCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 146 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
+.. . ..++.++|++|+...+... ++.+|+.++. .
T Consensus 75 ~~~------~-~~~~~i~~~~q~~~~~~~~----------t~~~~i~~~~--------------------~--------- 108 (194)
T cd03213 75 LDK------R-SFRKIIGYVPQDDILHPTL----------TVRETLMFAA--------------------K--------- 108 (194)
T ss_pred Cch------H-hhhheEEEccCcccCCCCC----------cHHHHHHHHH--------------------H---------
Confidence 751 0 1122345555543322111 3323322100 0
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
. . +|||||+||++||||| ||||++||. ++|+|++||
T Consensus 109 -------------~-~----~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 109 -------------L-R----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred -------------h-c----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 0 1 7999999999999999 999999873 789999999
Q ss_pred -h-HHHhcccEEEEEeeCCeEeecC
Q 019048 280 -G-DLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 280 -~-~~~~~aDri~v~l~~G~iv~~g 302 (347)
. .+..+||++++ |++|++++.|
T Consensus 171 ~~~~~~~~~d~v~~-l~~G~i~~~~ 194 (194)
T cd03213 171 PSSEIFELFDKLLL-LSQGRVIYFG 194 (194)
T ss_pred chHHHHHhcCEEEE-EeCCEEEecC
Confidence 3 46788999975 9999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=239.64 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=111.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
++++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (173)
T cd03230 1 IEVRNLSKRYGKK---TA---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKE-- 67 (173)
T ss_pred CEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccc--
Confidence 4789999999642 34 666999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. ...++.++|++|+ +.++.. ++.+|
T Consensus 68 -~--~~~~~~i~~~~q~-----------~~~~~~~tv~~~---------------------------------------- 93 (173)
T cd03230 68 -P--EEVKRRIGYLPEE-----------PSLYENLTVREN---------------------------------------- 93 (173)
T ss_pred -h--HhhhccEEEEecC-----------CccccCCcHHHH----------------------------------------
Confidence 0 0112234455554 322211 11111
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~ 283 (347)
+ . |||||+||++||||| ||||++||. |.|+|++|| ..+.
T Consensus 94 --------~-~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 94 --------L-K-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred --------h-h-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 0 0 999999999999999 999999973 689999999 4677
Q ss_pred hcccEEEEEeeCCeE
Q 019048 284 SLTDRARIRTYLGEL 298 (347)
Q Consensus 284 ~~aDri~v~l~~G~i 298 (347)
.+||++++ |++|++
T Consensus 160 ~~~d~i~~-l~~g~i 173 (173)
T cd03230 160 RLCDRVAI-LNNGRI 173 (173)
T ss_pred HhCCEEEE-EeCCCC
Confidence 79999975 999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=274.44 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=137.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~~g~~i~ 147 (347)
.++|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+|+|+|+.+ + ++|+|+++|+++.
T Consensus 258 ~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR---PI---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRRG 326 (490)
T ss_pred CceEEEeceEEEECCe---eE---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccCC
Confidence 4689999999999742 34 666999999999999999999999999999999876 5 6999999997653
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh---ccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~---~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
... .....++.++|++|+...+... ..++.+++..+... .........++++.++++.+++.+.
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 393 (490)
T PRK10938 327 SGE---TIWDIKKHIGYVSSSLHLDYRV--------STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-- 393 (490)
T ss_pred CCC---CHHHHHhhceEECHHHHhhccc--------CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh--
Confidence 100 0000123456666543221100 00122222211100 0001112335678899999999752
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C-CeEEEEe
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVT 278 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. + .|||++|
T Consensus 394 --------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 394 --------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred --------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 24788999999999999999999 999999984 4 4699999
Q ss_pred c--hHHHh-cccEEEEEeeCCeEeecCC
Q 019048 279 H--GDLLS-LTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 279 H--~~~~~-~aDri~v~l~~G~iv~~g~ 303 (347)
| +++.. +||++++ |++|++++...
T Consensus 460 Hd~~~~~~~~~d~v~~-l~~G~i~~~~~ 486 (490)
T PRK10938 460 HHAEDAPACITHRLEF-VPDGDIYRYVQ 486 (490)
T ss_pred cchhhhhhhhheeEEE-ecCCceEEeec
Confidence 9 46666 5999975 99999987643
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=245.56 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=127.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHDQ---PL---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCCe---eE---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 48899999999742 34 667999999999999999999999999999999999 999999999987641
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.....++.++|++|+...+... ++.+|+.++... . . ....+.++++.+++..
T Consensus 68 ---~~~~~~~~i~~~~q~~~~~~~~----------tv~~~~~~~~~~--~--~--~~~~~~~~l~~~~l~~--------- 119 (200)
T PRK13540 68 ---DLCTYQKQLCFVGHRSGINPYL----------TLRENCLYDIHF--S--P--GAVGITELCRLFSLEH--------- 119 (200)
T ss_pred ---CHHHHHhheEEeccccccCcCC----------CHHHHHHHHHhc--C--c--chHHHHHHHHHcCCch---------
Confidence 0011123456666654433222 333444332210 0 1 1235778899999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHh
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~ 284 (347)
..++++.+|||||+||++||||+ ||||++||. +.|+|++|| .....
T Consensus 120 --------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 120 --------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred --------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 34778899999999999999999 999999873 789999999 45556
Q ss_pred cccEE
Q 019048 285 LTDRA 289 (347)
Q Consensus 285 ~aDri 289 (347)
.||.-
T Consensus 192 ~~d~~ 196 (200)
T PRK13540 192 KADYE 196 (200)
T ss_pred ccchh
Confidence 68765
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=244.28 Aligned_cols=171 Identities=14% Similarity=0.095 Sum_probs=123.7
Q ss_pred CcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+.+.++||+|.|+.+ ....+ |+++||+|++|++++|+||||||||||+++|+|+++... |++|+|.++|.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~ 76 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKE 76 (202)
T ss_pred ceEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECcc
Confidence 358899999999653 22345 566999999999999999999999999999999987211 479999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. ....++.++|++|+...+..+ ++.+|+.+... . .
T Consensus 77 ~-----~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~---------~--------~------------- 111 (202)
T cd03233 77 F-----AEKYPGEIIYVSEEDVHFPTL----------TVRETLDFALR---------C--------K------------- 111 (202)
T ss_pred c-----hhhhcceEEEEecccccCCCC----------cHHHHHhhhhh---------h--------c-------------
Confidence 1 011233456666654333221 33344332110 0 0
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec---
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--- 279 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--- 279 (347)
.++.+..||+||+||++||||| ||||++||. +.|+|+++|
T Consensus 112 -----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~ 180 (202)
T cd03233 112 -----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAS 180 (202)
T ss_pred -----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence 1556789999999999999999 999999873 456666654
Q ss_pred hHHHhcccEEEEEeeCCeEeecC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g 302 (347)
+.+.++||++++ |++|++++.|
T Consensus 181 ~~~~~~~d~i~~-l~~G~i~~~g 202 (202)
T cd03233 181 DEIYDLFDKVLV-LYEGRQIYYG 202 (202)
T ss_pred HHHHHhCCeEEE-EECCEEEecC
Confidence 467889999975 9999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=305.71 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
..+....|+.+++..+++.... ....++++|++|+|+......+ |+|+||+|++|+.++|+||||||||||
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTL 659 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTGEGKTSL 659 (1495)
T ss_pred HHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCCCcHHHH
Confidence 3445666888887654321110 1235999999999964221234 667999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+++|+|+++ |++|.+.. + +..++|+.|+ +.++..++.+|+.++..
T Consensus 660 l~lLlG~~~-----~~~G~i~~----~------------~~~Iayv~Q~-----------p~Lf~gTIreNI~fg~~--- 704 (1495)
T PLN03232 660 ISAMLGELS-----HAETSSVV----I------------RGSVAYVPQV-----------SWIFNATVRENILFGSD--- 704 (1495)
T ss_pred HHHHhCCCc-----ccCCCEEE----e------------cCcEEEEcCc-----------cccccccHHHHhhcCCc---
Confidence 999999999 99886531 1 1123455554 44555566666665432
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
..+++..++++.+++.+++..+|++..+.|++++. +||||||||++||||+ |||||+||.
T Consensus 705 -----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~------~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 705 -----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV------NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred -----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc------ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 12456777888899988888889999999988853 7999999999999999 999999983
Q ss_pred ----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
++|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~-L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIIL-VSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEE-EeCCEEEEecCHHHHHhc
Confidence 789999999 456677999965 999999999999988753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-32 Score=266.75 Aligned_cols=201 Identities=11% Similarity=0.131 Sum_probs=169.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.+.+.|++|.|....++ |+++||+++.|+.+|+|||||+||||++++|.++|+ +++|.|.+||+++.
T Consensus 262 ~v~F~~V~F~y~~~r~i-----L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qdir--- 328 (497)
T COG5265 262 AVAFINVSFAYDPRRPI-----LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQDIR--- 328 (497)
T ss_pred eEEEEEEEeeccccchh-----hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchhHH---
Confidence 37899999999766555 777999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....+..+..+++|+|+.-++..+++.|+.++-. ..-.+.+..+++...+.+.+...|+++
T Consensus 329 ------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-------~at~eev~aaa~~aqi~~fi~~lP~gy 389 (497)
T COG5265 329 ------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-------DATAEEVGAAAEAAQIHDFIQSLPEGY 389 (497)
T ss_pred ------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-------cccHHHHHHHHHHhhhhHHHHhCchhh
Confidence 3444555666666777777777777788876543 223455667788888888888889999
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
.+-|.|..+ -|||||||||+|||++ ||.||+||. |.|-++|.| -...--
T Consensus 390 ~t~Vgergl------klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~ 463 (497)
T COG5265 390 DTGVGERGL------KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID 463 (497)
T ss_pred hcccchhee------eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC
Confidence 999999876 5999999999999998 999999983 899999999 355556
Q ss_pred ccEEEEEeeCCeEeecCCcccccCC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
||.|+| |++|+|+|.|+|++++..
T Consensus 464 adeiiv-l~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 464 ADEIIV-LDNGRIVERGTHEELLAA 487 (497)
T ss_pred CceEEE-eeCCEEEecCcHHHHHHc
Confidence 999975 999999999999999876
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=239.05 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=114.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++++| + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (182)
T cd03215 2 EPVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR 66 (182)
T ss_pred CcEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc
Confidence 3579999999998 3 777999999999999999999999999999999999 999999999988751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.. .....++.++|++|+... ..++. .++.+|+.+.
T Consensus 67 ~~---~~~~~~~~i~~~~q~~~~--------~~~~~~~t~~e~l~~~--------------------------------- 102 (182)
T cd03215 67 RS---PRDAIRAGIAYVPEDRKR--------EGLVLDLSVAENIALS--------------------------------- 102 (182)
T ss_pred cC---HHHHHhCCeEEecCCccc--------CcccCCCcHHHHHHHH---------------------------------
Confidence 10 001112334555554210 01111 1222222100
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
. .||||||||++||||| ||||++||. +.|+|++|| +
T Consensus 103 -------------~----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 103 -------------S----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred -------------h----hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 0 1999999999999999 999999984 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeE
Q 019048 281 DLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~i 298 (347)
++.++||++++ |++|++
T Consensus 166 ~~~~~~d~v~~-l~~G~i 182 (182)
T cd03215 166 ELLGLCDRILV-MYEGRI 182 (182)
T ss_pred HHHHhCCEEEE-ecCCcC
Confidence 78899999975 999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=241.66 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=118.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeCCCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
|+++|++++|++ . .+ |+++||+|++|++++|+|+||||||||+++|+|+ ++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~-~--~~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 1 LEIKDLHVSVGG-K--EI---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITDL 69 (200)
T ss_pred CeEEEEEEEeCC-E--Ee---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCcC
Confidence 578999999974 2 34 6669999999999999999999999999999999 46 8999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. .....+..++|++| ++.+++. ++ .+.+
T Consensus 70 ~---~~~~~~~~i~~v~q-----------~~~~~~~~~~-----------------------~~~l-------------- 98 (200)
T cd03217 70 P---PEERARLGIFLAFQ-----------YPPEIPGVKN-----------------------ADFL-------------- 98 (200)
T ss_pred C---HHHHhhCcEEEeec-----------ChhhccCccH-----------------------HHHH--------------
Confidence 0 00011112344444 3332211 11 0111
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
+..+.+|||||+||++||||| ||||++||. +.|+|++|| +.
T Consensus 99 ------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 99 ------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred ------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 123458999999999999999 999999873 789999999 45
Q ss_pred HHh-cccEEEEEeeCCeEeecCCc
Q 019048 282 LLS-LTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 282 ~~~-~aDri~v~l~~G~iv~~g~~ 304 (347)
+.. +||++++ |++|++++.|+.
T Consensus 167 ~~~~~~d~i~~-l~~G~i~~~~~~ 189 (200)
T cd03217 167 LDYIKPDRVHV-LYDGRIVKSGDK 189 (200)
T ss_pred HHHhhCCEEEE-EECCEEEEEccH
Confidence 666 7999975 999999999854
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=247.94 Aligned_cols=171 Identities=16% Similarity=0.230 Sum_probs=130.1
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchh
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 177 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~ 177 (347)
|+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++. . .++.++|++|+...+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~------~---~~~~i~~v~q~~~~~~~--- 63 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG------K---GWRHIGYVPQRHEFAWD--- 63 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch------H---hhCcEEEecccccccCC---
Confidence 5789999999999999999999999999999 99999999998753 1 12346777776532110
Q ss_pred hhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHH
Q 019048 178 DNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (347)
Q Consensus 178 qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQR 254 (347)
+..++.+++.++.... .........+++.++++.+++.+ ..++++.+||||||||
T Consensus 64 -----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~qr 121 (223)
T TIGR03771 64 -----FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQRQR 121 (223)
T ss_pred -----CCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHHHHH
Confidence 0113334443321100 00112234456888999999986 4588899999999999
Q ss_pred HHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 255 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 255 v~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
++||||| ||||++||. |.|+|++|| +.+.++||++++ + +|+++..|+++++
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~-l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL-L-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE-E-CCEEEeecCHHHh
Confidence 9999999 999999873 789999999 568889999975 8 7999999998887
Q ss_pred cC
Q 019048 308 FD 309 (347)
Q Consensus 308 ~~ 309 (347)
+.
T Consensus 200 ~~ 201 (223)
T TIGR03771 200 QD 201 (223)
T ss_pred cC
Confidence 55
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=241.09 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=118.8
Q ss_pred CcEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..|+++|+++.|+... ...+ |+++||+|++|++++|+||||||||||+++|+|++... |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~- 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD- 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH-
Confidence 4689999999996421 1234 66699999999999999999999999999999986210 78999999998763
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...++.++|++|+...+.. .++.+|+.++..
T Consensus 75 -------~~~~~~i~~~~q~~~~~~~----------~tv~~~l~~~~~-------------------------------- 105 (192)
T cd03232 75 -------KNFQRSTGYVEQQDVHSPN----------LTVREALRFSAL-------------------------------- 105 (192)
T ss_pred -------HHhhhceEEecccCccccC----------CcHHHHHHHHHH--------------------------------
Confidence 0112234555554332221 133333321100
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h-
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G- 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~- 280 (347)
. + +|||||+||++||||| ||||++||. |+|+|++|| +
T Consensus 106 ----------~-~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 106 ----------L-R----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred ----------H-h----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 0 1 7999999999999999 999999873 799999999 3
Q ss_pred HHHhcccEEEEEeeC-CeEeecC
Q 019048 281 DLLSLTDRARIRTYL-GELLGIP 302 (347)
Q Consensus 281 ~~~~~aDri~v~l~~-G~iv~~g 302 (347)
.+..+||++++ |++ |++++.|
T Consensus 171 ~~~~~~d~i~~-l~~~g~i~~~g 192 (192)
T cd03232 171 SIFEKFDRLLL-LKRGGKTVYFG 192 (192)
T ss_pred HHHhhCCEEEE-EcCCCeEEeCC
Confidence 36789999975 998 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-32 Score=241.60 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=114.1
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.. ........++.++|++|+....
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDY--SRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccc--cccchHHHHhhEEEEecChhhc
Confidence 666999999999999999999999999999999999 999999999988741 0001111133456666664210
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
++..++.+|+.++.... ........+++.++++.+++.+ ..++++.+||||||
T Consensus 81 ---------~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~ 133 (190)
T TIGR01166 81 ---------LFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGGEK 133 (190)
T ss_pred ---------cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHHHH
Confidence 11123444444332211 1223445567888999999986 45889999999999
Q ss_pred HHHHHHHHh---------chhccCCCC----------------CCeEEEEech
Q 019048 253 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 280 (347)
Q Consensus 253 QRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH~ 280 (347)
||++||||| ||||++||. |+|||++||+
T Consensus 134 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 134 KRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999999 999999983 7899999994
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=243.83 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=126.5
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
.+.|+.+.|+.+. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 2 ~~~~~~~~~~~~~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 2 QVTNGYFSWGSGL--AT---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeeEEecCCCC--cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccccccccc
Confidence 5789999997543 34 667999999999999999999999999999999999 9999999999876411100
Q ss_pred cccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
......++.++|++|+.. ++..++.+|+.++.. ... +++.++++.+++.+.+...+
T Consensus 72 ~~~~~~~~~i~~~~q~~~-----------~~~~t~~~nl~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~----- 127 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPW-----------LLNATVEENITFGSP----FNK----QRYKAVTDACSLQPDIDLLP----- 127 (218)
T ss_pred ccchhhcceEEEEcCCCc-----------cccccHHHHHhhcCc----CCH----HHHHHHHHHhCcHHHHHhCc-----
Confidence 000111234555555543 222245556554321 111 12334555556543110000
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------------CCeEEEEec--hHHH
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tiIiiTH--~~~~ 283 (347)
....+.++.++..|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 128 -~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 128 -FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred -CccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 0000123567899999999999999999 999999873 689999999 344
Q ss_pred hcccEEEEEeeCCe
Q 019048 284 SLTDRARIRTYLGE 297 (347)
Q Consensus 284 ~~aDri~v~l~~G~ 297 (347)
..||++++ |++|+
T Consensus 206 ~~~d~i~~-l~~G~ 218 (218)
T cd03290 206 PHADWIIA-MKDGS 218 (218)
T ss_pred hhCCEEEE-ecCCC
Confidence 57999965 98874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=238.44 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=110.5
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|++++|+. . .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~-~--~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (178)
T cd03229 1 LELKNVSKRYGQ-K--TV---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDLE- 68 (178)
T ss_pred CEEEEEEEEECC-e--EE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc-
Confidence 578999999964 2 34 666999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
+.....++.++|++|+ +.++.. ++.+|+.
T Consensus 69 -~~~~~~~~~i~~~~q~-----------~~~~~~~t~~~~l~-------------------------------------- 98 (178)
T cd03229 69 -DELPPLRRRIGMVFQD-----------FALFPHLTVLENIA-------------------------------------- 98 (178)
T ss_pred -hhHHHHhhcEEEEecC-----------CccCCCCCHHHhee--------------------------------------
Confidence 0000112233444443 222111 1111110
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+ .|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 99 --------~------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 99 --------L------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred --------e------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0 1999999999999999 999999873 589999999 467
Q ss_pred HhcccEEEEEeeCCe
Q 019048 283 LSLTDRARIRTYLGE 297 (347)
Q Consensus 283 ~~~aDri~v~l~~G~ 297 (347)
..+||++++ |++|+
T Consensus 165 ~~~~d~i~~-l~~g~ 178 (178)
T cd03229 165 ARLADRVVV-LRDGK 178 (178)
T ss_pred HHhcCEEEE-EeCCC
Confidence 779999975 98874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=236.13 Aligned_cols=145 Identities=16% Similarity=0.234 Sum_probs=108.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+... ..+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 69 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDL-- 69 (171)
T ss_pred CEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhc--
Confidence 57899999997532 134 666999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.... .++.++|+ +|++.++..++.+|
T Consensus 70 -~~~~-~~~~i~~~-----------~~~~~~~~~t~~e~----------------------------------------- 95 (171)
T cd03228 70 -DLES-LRKNIAYV-----------PQDPFLFSGTIREN----------------------------------------- 95 (171)
T ss_pred -CHHH-HHhhEEEE-----------cCCchhccchHHHH-----------------------------------------
Confidence 0000 01122333 33332211111000
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~ 285 (347)
+ ||+||+||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 96 -------l-------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 96 -------I-------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred -------h-------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 1 999999999999999 999999883 789999999 46655
Q ss_pred ccEEEEEeeCCe
Q 019048 286 TDRARIRTYLGE 297 (347)
Q Consensus 286 aDri~v~l~~G~ 297 (347)
||++++ |++|+
T Consensus 161 ~d~~~~-l~~g~ 171 (171)
T cd03228 161 ADRIIV-LDDGR 171 (171)
T ss_pred CCEEEE-EcCCC
Confidence 999975 98874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=250.31 Aligned_cols=205 Identities=19% Similarity=0.133 Sum_probs=140.2
Q ss_pred HHHHHHHHHhhhhhhhcc-----CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 50 RDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~-----~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
+...+++++...+++... ..+.|+++|+++. + . .+ |+++||+|++|++++|+||||||||||+++|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~-~--~--~v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 13 WDEGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV-G--A--PV---LKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred HHHHHHHHHhcccccccccccCCCCCeEEEEEEEEe-c--c--cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344566766655443221 2356999999985 2 2 23 67799999999999999999999999999999
Q ss_pred hcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChH
Q 019048 125 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 204 (347)
Q Consensus 125 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~ 204 (347)
|+++ |++|+|.++|. ++|++|+...+.. ++.+|+.++... ..
T Consensus 85 Gl~~-----p~~G~I~i~g~-----------------i~yv~q~~~l~~~-----------tv~enl~~~~~~----~~- 126 (282)
T cd03291 85 GELE-----PSEGKIKHSGR-----------------ISFSSQFSWIMPG-----------TIKENIIFGVSY----DE- 126 (282)
T ss_pred CCCC-----CCCcEEEECCE-----------------EEEEeCccccccc-----------CHHHHhhccccc----CH-
Confidence 9999 99999999882 2566666443322 233444332110 00
Q ss_pred HHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----
Q 019048 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 270 (347)
Q Consensus 205 ~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----- 270 (347)
..+.++++.+++.+.+..++... .+.....+.+||||||||++||||| ||||++||.
T Consensus 127 ---~~~~~~l~~~~l~~~l~~~~~~~------~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~ 197 (282)
T cd03291 127 ---YRYKSVVKACQLEEDITKFPEKD------NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKE 197 (282)
T ss_pred ---HHHHHHHHHhCCHHHHHhccccc------cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 11223344444432111010000 0122455789999999999999999 999999873
Q ss_pred -----------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 -----------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.|||++|| ......||++++ |++|++++.|+++++...
T Consensus 198 l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 198 IFESCVCKLMANKTRILVTSKMEHLKKADKILI-LHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 789999999 223357999975 999999999999888654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=272.05 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=142.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+++. .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~--~i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~----- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK--EI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG----- 67 (552)
T ss_pred EEEEEeeEEEecCCCC--ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-----
Confidence 4799999999997222 34 666999999999999999999999999999999999 99999998751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHh---hhhhhhhhccCCCh---------------------H
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIME---GVRHGELVIRRSDS---------------------S 204 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~---~v~~~~~~~~~~~~---------------------~ 204 (347)
..++|++|+...+..+ +.+|+.+....... .+............ .
T Consensus 68 ----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (552)
T TIGR03719 68 ----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137 (552)
T ss_pred ----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence 1357888876555443 66666542110000 00000000000000 0
Q ss_pred HHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----
Q 019048 205 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 270 (347)
Q Consensus 205 ~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----- 270 (347)
....++.++++.+++.. .++++.+||||||||++||||| ||||++||.
T Consensus 138 ~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~ 199 (552)
T TIGR03719 138 DLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199 (552)
T ss_pred hhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHH
Confidence 12345566777777743 2678899999999999999999 999999984
Q ss_pred --------CCeEEEEec--hHHHhcccEEEEEeeCCeEe-ecCCcccccC
Q 019048 271 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 309 (347)
Q Consensus 271 --------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 309 (347)
+.|||+||| +.+..+||++++ |++|+++ ..|+.++++.
T Consensus 200 l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~-l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 200 LEQHLQEYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EECCEEEEecCCHHHHHH
Confidence 679999999 578889999975 9999976 6788876654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=231.47 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=108.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.. ++ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---~v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGGV---KA---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECCe---EE---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 5789999999742 34 666999999999999999999999999999999999 999999999987640
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.... ... -..++
T Consensus 67 ------------~~~~------------------------------------~~~-------~~~i~------------- 78 (163)
T cd03216 67 ------------ASPR------------------------------------DAR-------RAGIA------------- 78 (163)
T ss_pred ------------CCHH------------------------------------HHH-------hcCeE-------------
Confidence 0000 000 00010
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHh
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~ 284 (347)
+..+|||||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 79 -----------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 79 -----------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred -----------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 1112999999999999999 999999883 789999999 46788
Q ss_pred cccEEEEEeeCCeEee
Q 019048 285 LTDRARIRTYLGELLG 300 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~ 300 (347)
+||++++ |++|++++
T Consensus 148 ~~d~~~~-l~~g~i~~ 162 (163)
T cd03216 148 IADRVTV-LRDGRVVG 162 (163)
T ss_pred hCCEEEE-EECCEEEe
Confidence 9999975 99999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=278.18 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=145.0
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC--CcEEEECCEeCCCCc
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTY 150 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~--~G~I~~~g~~i~~~~ 150 (347)
.++|++++|+++ .+ |+|+||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|+++..
T Consensus 70 ~~~~l~~~~~~~---~i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~~-- 136 (659)
T PLN03211 70 KISDETRQIQER---TI---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPTK-- 136 (659)
T ss_pred ccccccccCCCC---ee---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECch--
Confidence 356777788642 34 666999999999999999999999999999999998 64 8999999988641
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. .++.++|++|+...+..+ |.|++.+ ..... .....++..+++.++++.+||.+...
T Consensus 137 -----~-~~~~i~yv~Q~~~l~~~lTV~E~l~~-----------~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 196 (659)
T PLN03211 137 -----Q-ILKRTGFVTQDDILYPHLTVRETLVF-----------CSLLRLPKSLTKQEKILVAESVISELGLTKCEN--- 196 (659)
T ss_pred -----h-hccceEEECcccccCCcCCHHHHHHH-----------HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC---
Confidence 1 123467777765554433 5555443 21111 11233455677889999999975210
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
+. +.++.+.+||||||||++||++| ||||+|||. |+|||++|| +
T Consensus 197 ----t~-----vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 197 ----TI-----IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred ----ce-----eCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 00 12456789999999999999999 999999883 899999999 3
Q ss_pred -HHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 281 -DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 281 -~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
.+.+++|++++ |++|+++..|+++++.
T Consensus 268 ~~i~~~~D~iil-L~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 268 SRVYQMFDSVLV-LSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHHHHhhceEEE-ecCCcEEEECCHHHHH
Confidence 57899999975 9999999999988774
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=236.51 Aligned_cols=166 Identities=10% Similarity=0.076 Sum_probs=123.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++|++++|+. .. +.++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ~l~~~~l~~~~~~-~~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQ-KN------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECC-cE------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 4889999999964 22 344999999999999999999999999999999999 999999999987641
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
. .++.++|++++...+.. .++.+|+.+..... ...+++.++++.+++.+
T Consensus 67 ----~--~~~~~~~~~~~~~~~~~----------~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~--------- 115 (195)
T PRK13541 67 ----I--AKPYCTYIGHNLGLKLE----------MTVFENLKFWSEIY------NSAETLYAAIHYFKLHD--------- 115 (195)
T ss_pred ----h--hhhhEEeccCCcCCCcc----------CCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh---------
Confidence 0 01123455544322211 13344443322111 01345677889999976
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHh
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~ 284 (347)
..++.+.+|||||+||++||||+ ||||++||. +.|+|++|| .....
T Consensus 116 --------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 116 --------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred --------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 45888999999999999999999 999999873 799999999 34455
Q ss_pred cccEE
Q 019048 285 LTDRA 289 (347)
Q Consensus 285 ~aDri 289 (347)
.||.+
T Consensus 188 ~~~~~ 192 (195)
T PRK13541 188 SAQIL 192 (195)
T ss_pred hhhee
Confidence 57766
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=248.27 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=130.0
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE-----------ECC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~-----------~~g 143 (347)
.||+++|+.+. .+ |+++|+ +++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 4 ~~~~~~y~~~~--~~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNS--FK---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcc--hh---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 47899996532 34 566994 99999999999999999999999999999 9999996 667
Q ss_pred EeCCCCccccccccCC--CccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 144 SVGDGTYFLQEYTIPR--GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 144 ~~i~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+++... . ....+ ..+++.++ ++...+.++.+++.... ......+.+.++++.+|+.+
T Consensus 73 ~~~~~~--~--~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~ 131 (255)
T cd03236 73 SELQNY--F--TKLLEGDVKVIVKPQ-----------YVDLIPKAVKGKVGELL------KKKDERGKLDELVDQLELRH 131 (255)
T ss_pred chhhhh--h--HHhhhcccceeeecc-----------hhccCchHHHHHHHHHh------chhHHHHHHHHHHHHcCCch
Confidence 665310 0 00000 01223333 22222222223333221 12234466788999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
..++.+.+||||||||++||||| ||||++||. ++|||+
T Consensus 132 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 132 -----------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred -----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45888999999999999999999 999999873 789999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCC
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 313 (347)
+|| ..+..+||++++ | +|++.+.| ++..|.+
T Consensus 195 iSHd~~~~~~~ad~i~~-l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 195 VEHDLAVLDYLSDYIHC-L-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred EECCHHHHHHhCCEEEE-E-CCCCCcce----eeecCcc
Confidence 999 567779999964 7 56676554 5556655
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=274.50 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=137.3
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+.. .+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 1 ~i~i~nls~~~g~~---~~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~---- 65 (638)
T PRK10636 1 MIVFSSLQIRRGVR---VL---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ---- 65 (638)
T ss_pred CEEEEEEEEEeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE----
Confidence 58999999999752 34 666999999999999999999999999999999999 9999999987421
Q ss_pred cccccccCCCccceeeccc----cccccchhhhhHhhHH-HHHh------h--hhhhhhh--ccCCChHHHHHHHHHHHH
Q 019048 151 FLQEYTIPRGSNSFSLYDT----RSLSDDASDNINMIKL-WIME------G--VRHGELV--IRRSDSSSLRNRMRCKAH 215 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~----~~~~~~v~qn~~~~~~-~v~~------~--v~~~~~~--~~~~~~~~~~~~i~~~l~ 215 (347)
++|+.|+. ....+++++....+.. +... + ..++... .........+.++.++++
T Consensus 66 -----------i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 134 (638)
T PRK10636 66 -----------LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134 (638)
T ss_pred -----------EEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 12332221 1112223333222111 0000 0 0000000 000111234567889999
Q ss_pred HCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCe
Q 019048 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKP 273 (347)
Q Consensus 216 ~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~t 273 (347)
.+|+.+. ..++++.+||||||||++||||| ||||++||. +.|
T Consensus 135 ~lgl~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~t 198 (638)
T PRK10636 135 GLGFSNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGT 198 (638)
T ss_pred hCCCCch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCe
Confidence 9999732 24889999999999999999999 999999984 789
Q ss_pred EEEEec--hHHHhcccEEEEEeeCCeEee-cCCccccc
Q 019048 274 VVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 308 (347)
Q Consensus 274 iIiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~ 308 (347)
||+||| .++..+||++++ |++|+++. .|+.....
T Consensus 199 viivsHd~~~l~~~~d~i~~-L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 199 LILISHDRDFLDPIVDKIIH-IEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEeCCHHHHHHhcCEEEE-EeCCEEEEecCCHHHHH
Confidence 999999 578899999975 99999974 56655443
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=234.21 Aligned_cols=201 Identities=15% Similarity=0.211 Sum_probs=149.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+.+-.+.+ ++ |++|||+|++||+.+|+||||||||||.++|+|.-. +.+++|+|.|+|++|..
T Consensus 2 ~~L~I~dLhv~v~~~k--eI---LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~- 72 (251)
T COG0396 2 MMLEIKDLHVEVEGKK--EI---LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILE- 72 (251)
T ss_pred ceeEEeeeEEEecCch--hh---hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCccccc-
Confidence 5799999999986532 34 666999999999999999999999999999999764 22899999999999972
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+..+..|..+...+|.+..+.+. +.+.+... -|...+.. .. ..+..+++.++++.+++++.
T Consensus 73 --l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a-----~n~~~~~~---~~-~~~~~~~~~e~~~~l~~~~~------ 135 (251)
T COG0396 73 --LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA-----MNARRGAR---GI-LPEFIKELKEKAELLGLDEE------ 135 (251)
T ss_pred --CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH-----HHhhhccc---cc-cHHHHHHHHHHHHHcCCCHH------
Confidence 222223344555666666666555 22222111 11111000 01 23556788899999999984
Q ss_pred eeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCC----------------CCCeEEEEec-hH
Q 019048 229 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH-GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tiIiiTH-~~ 281 (347)
+++++.+ .+|||+|+|..|+.++ |||-|||| +|.++++||| ..
T Consensus 136 ----------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 136 ----------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred ----------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 4677775 5999999999999998 99999987 2899999999 55
Q ss_pred HHhcc--cEEEEEeeCCeEeecCCccccc
Q 019048 282 LLSLT--DRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 282 ~~~~a--Dri~v~l~~G~iv~~g~~~~l~ 308 (347)
+..+. |++.| |.+|+|+..|.+ ++.
T Consensus 206 ll~~i~pD~vhv-l~~GrIv~sG~~-el~ 232 (251)
T COG0396 206 LLDYIKPDKVHV-LYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHhhcCCCEEEE-EECCEEEecCCH-HHH
Confidence 55554 99986 999999999998 554
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=228.42 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=109.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.+.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~~--~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGRV--L---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCCe--e---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 478999999964333 4 666999999999999999999999999999999999 99999999873
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
+.++|++|+...+ ..++.+|+.++
T Consensus 64 --------~~i~~~~q~~~~~-----------~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 --------EDLLFLPQRPYLP-----------LGTLREQLIYP------------------------------------- 87 (166)
T ss_pred --------ceEEEECCCCccc-----------cccHHHHhhcc-------------------------------------
Confidence 1336666654311 11333443210
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec-hHHHhcccE
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH-~~~~~~aDr 288 (347)
.+.+||||||||++||||| ||||++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 2458999999999999999 999999984 789999999 345579999
Q ss_pred EEEEeeCC
Q 019048 289 ARIRTYLG 296 (347)
Q Consensus 289 i~v~l~~G 296 (347)
+++ |+++
T Consensus 157 i~~-l~~~ 163 (166)
T cd03223 157 VLD-LDGE 163 (166)
T ss_pred EEE-EcCC
Confidence 975 7765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=269.55 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=135.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.. .+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.. ..
T Consensus 2 ~~l~i~~ls~~~~~~---~i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~-~~- 68 (635)
T PRK11147 2 SLISIHGAWLSFSDA---PL---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDL-IV- 68 (635)
T ss_pred cEEEEeeEEEEeCCc---ee---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCC-EE-
Confidence 479999999999752 34 666999999999999999999999999999999999 999999998731 10
Q ss_pred ccccccccCCCccceeeccc-cccccchhhhhHhhH-----H-HH-------------Hhhhhhhhhh---ccCCChHHH
Q 019048 150 YFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIK-----L-WI-------------MEGVRHGELV---IRRSDSSSL 206 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~-~~~~~~v~qn~~~~~-----~-~v-------------~~~v~~~~~~---~~~~~~~~~ 206 (347)
++..|.. .....+++|++.... . .. .+++...... .........
T Consensus 69 -------------~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 135 (635)
T PRK11147 69 -------------ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQL 135 (635)
T ss_pred -------------EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccH
Confidence 1111111 011122233221000 0 00 0111110000 000111234
Q ss_pred HHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------
Q 019048 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------- 270 (347)
Q Consensus 207 ~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------- 270 (347)
..++.++++.+|+.. ++++.+||||||||++||||| ||||++||.
T Consensus 136 ~~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~ 196 (635)
T PRK11147 136 ENRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE 196 (635)
T ss_pred HHHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH
Confidence 567888999999964 678899999999999999999 999999984
Q ss_pred ------CCeEEEEec--hHHHhcccEEEEEeeCCeEee-cCCcccccC
Q 019048 271 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 309 (347)
Q Consensus 271 ------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~~ 309 (347)
+.|||+||| .++..+||+|++ |++|+++. .|+..+++.
T Consensus 197 ~~L~~~~~tvlivsHd~~~l~~~~d~i~~-L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 197 GFLKTFQGSIIFISHDRSFIRNMATRIVD-LDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhcCeEEE-EECCEEEEecCCHHHHHH
Confidence 679999999 578889999975 99999984 577665543
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=242.25 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=113.0
Q ss_pred ceeeEEEec-----CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeec
Q 019048 93 MTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 167 (347)
Q Consensus 93 L~~isl~i~-----~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~ 167 (347)
+.+++|++. +|++++|+||||||||||+++|+|+++ |++|+|.++|..+ +|.+|
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i----------------~~~~q 68 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV----------------SYKPQ 68 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE----------------EEecc
Confidence 455777776 799999999999999999999999999 9999999998533 46666
Q ss_pred ccccccc-chhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCC
Q 019048 168 DTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (347)
Q Consensus 168 ~~~~~~~-~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~ 246 (347)
+...... .+.+++.... ... . .....+.++++.+++.. ..++++.+
T Consensus 69 ~~~~~~~~tv~e~l~~~~-----------~~~-~----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~ 115 (246)
T cd03237 69 YIKADYEGTVRDLLSSIT-----------KDF-Y----THPYFKTEIAKPLQIEQ-----------------ILDREVPE 115 (246)
T ss_pred cccCCCCCCHHHHHHHHh-----------hhc-c----ccHHHHHHHHHHcCCHH-----------------HhhCChhh
Confidence 5433222 2444432211 000 0 01123567888999976 45889999
Q ss_pred CCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEeeCC
Q 019048 247 SDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 247 LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l~~G 296 (347)
||||||||++||||| ||||++||. ++|||+||| +.+..+||++++ |+.+
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~-l~~~ 192 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGE 192 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EcCC
Confidence 999999999999999 999999873 789999999 567789999965 7554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=271.43 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||++.|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~~--i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV--L---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCCe--e---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 46999999999964433 4 666999999999999999999999999999999999 9999998764
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++.++|++|+...+.+. +.+|+.++.............+++.++++.+++++.+ +++.+
T Consensus 514 ---------~~~i~~v~Q~~~l~~~t-----------v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~-~~~~g 572 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLGT-----------LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL-EREGG 572 (659)
T ss_pred ---------CCcEEEECCCCCCCCcC-----------HHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHH-hhcCC
Confidence 12346777776544333 3444443321100000111234577889999997632 12222
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec-hHHHhcc
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH-~~~~~~a 286 (347)
+.++. ..+.+||||||||++||||| ||||++||. |+|+|+||| ....++|
T Consensus 573 ~~~~~-------~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAVQ-------DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred ccccc-------ccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 22221 13468999999999999999 999999984 899999999 4566889
Q ss_pred cEEEEEee
Q 019048 287 DRARIRTY 294 (347)
Q Consensus 287 Dri~v~l~ 294 (347)
|++++ |+
T Consensus 646 d~il~-l~ 652 (659)
T TIGR00954 646 EYLLY-MD 652 (659)
T ss_pred CEEEE-Ee
Confidence 99965 75
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=291.64 Aligned_cols=211 Identities=13% Similarity=0.129 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHhhhhhhhc-----c---C-CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 47 QRRRDAVFREVLQSYDQLRT-----R---I-GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-----~---~-~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
......|+.+++..++.... . . ...++++|++|.|+... ..+ |+|+||+|++|++++|+||||||||
T Consensus 603 a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---l~~isl~i~~G~~v~IvG~~GsGKS 678 (1522)
T TIGR00957 603 ASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDL-PPT---LNGITFSIPEGALVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCC-Cce---eeeeEEEEcCCCEEEEECCCCCCHH
Confidence 34566688887754432111 0 1 12699999999996432 123 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|+|+++ |++|+|.++|. ++|++|+...+.+ ++.+|+.++..
T Consensus 679 TLl~~l~g~~~-----~~~G~i~~~g~-----------------i~yv~Q~~~l~~~-----------Ti~eNI~~g~~- 724 (1522)
T TIGR00957 679 SLLSALLAEMD-----KVEGHVHMKGS-----------------VAYVPQQAWIQND-----------SLRENILFGKA- 724 (1522)
T ss_pred HHHHHHhCCCc-----cCCcEEEECCE-----------------EEEEcCCccccCC-----------cHHHHhhcCCc-
Confidence 99999999999 99999999872 2567766544333 45556554432
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
.+. ++..++++.+++.+.+..++++..+.|+ ..+.+||||||||++||||+ ||||++|
T Consensus 725 ---~~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig------~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 725 ---LNE----KYYQQVLEACALLPDLEILPSGDRTEIG------EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred ---cCH----HHHHHHHHHhCCHHHHHhcCCCCCceec------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 111 2233444555554433333444444444 44678999999999999999 9999998
Q ss_pred CC------------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 269 RD------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 269 d~------------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
|. ++|+|+||| ......||+|++ |++|++++.|++++++.
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~-l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV-MSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE-ecCCeEEeeCCHHHHHh
Confidence 73 589999999 344455999965 99999999999988864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=269.12 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=137.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|++ ..+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.+++. .
T Consensus 310 ~~~l~~~~l~~~y~~---~~i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~-- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RII---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-I-- 375 (638)
T ss_pred CceEEEEeeEEEeCC---eee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-E--
Confidence 457999999999974 234 566999999999999999999999999999999999 99999999641 1
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.++|.+|+.... + ..+ .++.+++.. .......+++.+++..+++...
T Consensus 376 ------------~igy~~Q~~~~~--l-~~~-----~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~------ 422 (638)
T PRK10636 376 ------------KLGYFAQHQLEF--L-RAD-----ESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD------ 422 (638)
T ss_pred ------------EEEEecCcchhh--C-Ccc-----chHHHHHHH-------hCchhhHHHHHHHHHHcCCChh------
Confidence 235666642110 0 000 012222210 0012234567889999999642
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
..++++..||||||||++|||+| ||||++||. +.|||+||| +++..
T Consensus 423 ----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 423 ----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 24789999999999999999999 999999984 559999999 57888
Q ss_pred cccEEEEEeeCCeEe-ecCCcccc
Q 019048 285 LTDRARIRTYLGELL-GIPPAKQI 307 (347)
Q Consensus 285 ~aDri~v~l~~G~iv-~~g~~~~l 307 (347)
+||++++ |++|+++ ..|+.++.
T Consensus 493 ~~d~i~~-l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 493 TTDDLYL-VHDGKVEPFDGDLEDY 515 (638)
T ss_pred hCCEEEE-EECCEEEEcCCCHHHH
Confidence 9999975 9999997 67777665
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=264.25 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=136.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 323 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~--- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDR---LL---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV--- 387 (556)
T ss_pred eEEEEEeEEEEECCe---ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce---
Confidence 589999999999752 34 666999999999999999999999999999999999 9999999854 21
Q ss_pred ccccccccCCCccceeeccc-cccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDT-RSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~-~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.++|++|+. ..+..+ +.+++ .++..... .... ...+.++++.+++...
T Consensus 388 -----------~i~~v~q~~~~~~~~~tv~e~l-----------~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 437 (556)
T PRK11819 388 -----------KLAYVDQSRDALDPNKTVWEEI-----------SGGLDIIK-VGNR--EIPSRAYVGRFNFKGG----- 437 (556)
T ss_pred -----------EEEEEeCchhhcCCCCCHHHHH-----------Hhhccccc-cccc--HHHHHHHHHhCCCChh-----
Confidence 246777764 222222 44443 32211110 1111 1234568999999642
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+.
T Consensus 438 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 438 -----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLD 506 (556)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999984 458999999 5788
Q ss_pred hcccEEEEEeeC-CeEe-ecCCcccccCC
Q 019048 284 SLTDRARIRTYL-GELL-GIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~-G~iv-~~g~~~~l~~~ 310 (347)
.+||++++ |++ |++. ..|+.++++++
T Consensus 507 ~~~d~i~~-l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 507 RIATHILA-FEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhCCEEEE-EECCCeEEEecCCHHHHHHH
Confidence 99999975 985 7876 46666555443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=269.68 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=135.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|+++.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 507 ~~L~~~~ls~~y~~~~~--i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~~---- 572 (718)
T PLN03073 507 PIISFSDASFGYPGGPL--L---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAKV---- 572 (718)
T ss_pred ceEEEEeeEEEeCCCCe--e---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCce----
Confidence 68999999999964332 4 666999999999999999999999999999999999 999999986521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.++|++|+... .+ +.++..+.... . ... ...+++.++++.+++.+.
T Consensus 573 -----------~igyv~Q~~~~--~l~~~~~~~~~~~~---------~-~~~----~~~~~i~~~L~~~gl~~~------ 619 (718)
T PLN03073 573 -----------RMAVFSQHHVD--GLDLSSNPLLYMMR---------C-FPG----VPEQKLRAHLGSFGVTGN------ 619 (718)
T ss_pred -----------eEEEEeccccc--cCCcchhHHHHHHH---------h-cCC----CCHHHHHHHHHHCCCChH------
Confidence 24677775321 11 22222111000 0 001 113567789999999742
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| ..+..
T Consensus 620 ----------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 620 ----------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 34788999999999999999999 999999983 459999999 57888
Q ss_pred cccEEEEEeeCCeEe-ecCCcc
Q 019048 285 LTDRARIRTYLGELL-GIPPAK 305 (347)
Q Consensus 285 ~aDri~v~l~~G~iv-~~g~~~ 305 (347)
+||++++ |++|+++ ..|+.+
T Consensus 690 ~~drv~~-l~~G~i~~~~g~~~ 710 (718)
T PLN03073 690 SVDELWV-VSEGKVTPFHGTFH 710 (718)
T ss_pred hCCEEEE-EECCEEEEeCCCHH
Confidence 9999975 9999998 566554
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=234.68 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=117.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE-ECCEeCCCCccccccccCCCccceeeccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~ 171 (347)
|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|. ++|..+. ++ +....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~--------------~~---~~~~l 60 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP--------------LG---ANSFI 60 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec--------------cc---ccccc
Confidence 566999999999999999999999999999999999 9999997 7764331 01 11112
Q ss_pred cccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 172 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 172 ~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
+..+ +.+|+.++ .... ..+..... ..+.+..+++. ..++++.+||+|
T Consensus 61 ~~~ltv~enl~~~-----------~~~~-~~~~~~~~---~~~~~~~~l~~-----------------~~~~~~~~lS~G 108 (213)
T PRK15177 61 LPGLTGEENARMM-----------ASLY-GLDGDEFS---HFCYQLTQLEQ-----------------CYTDRVSEYSVT 108 (213)
T ss_pred CCcCcHHHHHHHH-----------HHHc-CCCHHHHH---HHHHHHhChhH-----------------HhhchHhhcCHH
Confidence 2222 44444332 1111 11222222 23344566665 457889999999
Q ss_pred HHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCc
Q 019048 251 KQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 251 qrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
||||++||||| ||||+++|. +.|+|++|| ..+..+||++++ |++|++++.++.
T Consensus 109 ~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~-l~~G~i~~~~~~ 187 (213)
T PRK15177 109 MKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGV-LLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEE-EECCeEEEeCCH
Confidence 99999999999 999999873 678999999 567789999975 999999998887
Q ss_pred ccc
Q 019048 305 KQI 307 (347)
Q Consensus 305 ~~l 307 (347)
++.
T Consensus 188 ~~~ 190 (213)
T PRK15177 188 AQA 190 (213)
T ss_pred HHH
Confidence 655
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=233.84 Aligned_cols=192 Identities=14% Similarity=0.132 Sum_probs=143.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++|+++.|++ .++ |++||++|++||..+|+||||||||||+++++|-++ |++|.+.+.|+..-.
T Consensus 29 ~~li~l~~v~v~r~g---k~i---L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~ 97 (257)
T COG1119 29 EPLIELKNVSVRRNG---KKI---LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGK 97 (257)
T ss_pred cceEEecceEEEECC---Eee---ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccC
Confidence 467999999999986 344 666999999999999999999999999999999999 999999999987641
Q ss_pred CccccccccCCCccceeeccccccccchhhhhH--hhHH-HHHhhhhhhhhh----ccCCChHHHHHHHHHHHHHCCCCc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELV----IRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~--~~~~-~v~~~v~~~~~~----~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
.. .. .+.+..+++|.-.+. +... ++.+-|..|.-. .+........+++..+++.+|+.+
T Consensus 98 ~~-------------~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~ 163 (257)
T COG1119 98 GE-------------TI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163 (257)
T ss_pred Cc-------------ch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh
Confidence 11 11 333433444321111 1111 233333333211 111223566778899999999998
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------------CCeE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPV 274 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~ti 274 (347)
+++++..+||-|||||+.||||| |||++|||. +.++
T Consensus 164 -----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~l 226 (257)
T COG1119 164 -----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPAL 226 (257)
T ss_pred -----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceE
Confidence 56999999999999999999999 999999873 6889
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCC
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 303 (347)
|+||| +++....+++.. +++|+++..|.
T Consensus 227 l~VtHh~eEi~~~~th~ll-l~~g~v~~~g~ 256 (257)
T COG1119 227 LFVTHHAEEIPPCFTHRLL-LKEGEVVAQGK 256 (257)
T ss_pred EEEEcchhhcccccceEEE-eeCCceeeccc
Confidence 99999 677777788855 99999998873
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=282.17 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=162.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++|++.+|..+.+ .| |++|||+|++||.+||||.+|||||||+++|-++.. |.+|+|.+||.|+.
T Consensus 1137 G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-----~~~G~I~IDgvdI~-- 1205 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-----PAEGEILIDGVDIS-- 1205 (1381)
T ss_pred CeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-----ccCCeEEEcCeecc--
Confidence 35999999999965532 34 666999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccC--CCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIP--RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~--r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
...+. |++++..+||+..|.|.+..|+..+. +-..+++.++|+.++|.+.+..+|
T Consensus 1206 ----~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-------------------e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1206 ----KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-------------------EYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred ----cccHHHHHhcCeeeCCCCceecCccccccCccc-------------------ccCHHHHHHHHHHhChHHHHhhCC
Confidence 22221 45566666666666666666654432 223456778888888877665666
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 281 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~ 281 (347)
.++...|-|. ..++|-||||.+++|||| ||+|++.|. ++|||.|.| +.
T Consensus 1263 ~~Ld~~v~eg------G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1263 GGLDSEVSEG------GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT 1336 (1381)
T ss_pred cCCCceecCC------CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch
Confidence 6655555554 458999999999999999 999999984 999999999 44
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
+. -||||+| |++|+++|.++|.+++.++..-.
T Consensus 1337 Vm-d~DrVlV-ld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1337 VM-DSDRVLV-LDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred hh-hcCeEEE-eeCCeEeecCChHHHHhCCcchH
Confidence 44 4899975 99999999999999998866444
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=265.33 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=133.0
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++ +
T Consensus 338 ~~~l~~~~ls~~~~~--~~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~-- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--FS-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---L-- 400 (590)
T ss_pred ceEEEEcceEEEECC--EE-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---e--
Confidence 468999999999964 23 666999999999999999999999999999999999 999999985 1
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.++|.+|+....... |.+++ .++.. ... ....+.++++.+++.+
T Consensus 401 ------------~i~y~~Q~~~~~~~~tv~e~l-----------~~~~~---~~~---~~~~~~~~L~~l~l~~------ 445 (590)
T PRK13409 401 ------------KISYKPQYIKPDYDGTVEDLL-----------RSITD---DLG---SSYYKSEIIKPLQLER------ 445 (590)
T ss_pred ------------eEEEecccccCCCCCcHHHHH-----------HHHhh---hcC---hHHHHHHHHHHCCCHH------
Confidence 135677765432222 44443 32111 001 1124678899999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 446 -----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 446 -----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred -----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999873 789999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~ 303 (347)
+++..+|||+++ |+ |++...|.
T Consensus 515 ~~~~~~aDrviv-l~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLMV-FE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEEE-Ec-Ccceeeee
Confidence 578889999965 75 57777765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=262.22 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=133.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|+++.|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---LL---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 3589999999999642 34 666999999999999999999999999999999999 9999999854 21
Q ss_pred CccccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.++|++|+.. .+..+ ++.+++.++.... ..... ..++.++++.+++...
T Consensus 386 ------------~i~~v~q~~~~~~~~~----------tv~e~l~~~~~~~-~~~~~--~~~~~~~l~~~~l~~~----- 435 (552)
T TIGR03719 386 ------------KLAYVDQSRDALDPNK----------TVWEEISGGLDII-QLGKR--EVPSRAYVGRFNFKGS----- 435 (552)
T ss_pred ------------EEEEEeCCccccCCCC----------cHHHHHHhhcccc-ccCcc--hHHHHHHHHhCCCChh-----
Confidence 2467777642 22222 2333333322111 11111 2235578999999642
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~ 283 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+.
T Consensus 436 -----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~ 504 (552)
T TIGR03719 436 -----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLD 504 (552)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 24789999999999999999999 999999984 458999999 5788
Q ss_pred hcccEEEEEeeC-CeEe-ecCCc
Q 019048 284 SLTDRARIRTYL-GELL-GIPPA 304 (347)
Q Consensus 284 ~~aDri~v~l~~-G~iv-~~g~~ 304 (347)
.+||++++ |++ |+++ ..|+.
T Consensus 505 ~~~d~i~~-l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 505 RIATHILA-FEGDSHVEWFEGNY 526 (552)
T ss_pred HhCCEEEE-EECCCeEEEeCCCH
Confidence 89999975 986 5776 34544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-30 Score=229.58 Aligned_cols=192 Identities=17% Similarity=0.154 Sum_probs=140.9
Q ss_pred cEEEeeeEEEeCCCce--eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~--~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|+++.|+.+.|..+.. .+++++ +||+|.+|+|+.|+|.||||||||+|+|+|-+. |++|+|+++|.+++.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~---~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk 72 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG---LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTK 72 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc---CceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceeccc
Confidence 4678888888754432 356555 999999999999999999999999999999999 999999999999972
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhH--H-HHHhhhhhhhhhc--cCCCh---HHHHHHHHHHHHHCC--
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK--L-WIMEGVRHGELVI--RRSDS---SSLRNRMRCKAHKIG-- 218 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~--~-~v~~~v~~~~~~~--~~~~~---~~~~~~i~~~l~~~g-- 218 (347)
. .......+..-|||+|.... . ++.+|+....... +.... ...++..++.+..++
T Consensus 73 ~---------------~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg 137 (263)
T COG1101 73 K---------------SVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137 (263)
T ss_pred C---------------CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc
Confidence 2 22222222333455554321 2 5666665543321 11111 223333444556554
Q ss_pred CCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CC
Q 019048 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 272 (347)
Q Consensus 219 l~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 272 (347)
+++ .++.+..-|||||||-+++++|. ||-|++||+ +.
T Consensus 138 Len-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 138 LEN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred hhh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 455 45888899999999999999997 999999996 88
Q ss_pred eEEEEec--hHHHhcccEEEEEeeCCeEeecCC
Q 019048 273 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 273 tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 303 (347)
|.+|||| .++..|.+|.++ |++|+|+-+-.
T Consensus 201 TtlMVTHnm~~Al~yG~RlIm-Lh~G~IvlDv~ 232 (263)
T COG1101 201 TTLMVTHNMEDALDYGNRLIM-LHSGKIVLDVT 232 (263)
T ss_pred ceEEEeccHHHHHhhCCeEEE-EeCCeEEEEcc
Confidence 9999999 689999999964 99999997744
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=264.18 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=133.5
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+|+++||++.|++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~---~~i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~-- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQL---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKL-- 382 (635)
T ss_pred CceEEEeeeEEEECC---eEE---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCc--
Confidence 357999999999974 234 566999999999999999999999999999999999 99999998 4332
Q ss_pred CccccccccCCCccceeecccc-ccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTR-SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~-~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.++|++|+.. .+... +.+++ .++.... ... .....+.+++..+++...
T Consensus 383 ------------~i~y~~q~~~~l~~~~tv~e~l-----------~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~---- 432 (635)
T PRK11147 383 ------------EVAYFDQHRAELDPEKTVMDNL-----------AEGKQEV-MVN--GRPRHVLGYLQDFLFHPK---- 432 (635)
T ss_pred ------------EEEEEeCcccccCCCCCHHHHH-----------Hhhcccc-ccc--chHHHHHHHHHhcCCCHH----
Confidence 2366666542 22222 34443 3221100 001 113457788999999642
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHH
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 282 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| .++
T Consensus 433 ------------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~ 500 (635)
T PRK11147 433 ------------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFV 500 (635)
T ss_pred ------------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 24788999999999999999999 999999983 569999999 578
Q ss_pred HhcccEEEEEee-CCeEeec
Q 019048 283 LSLTDRARIRTY-LGELLGI 301 (347)
Q Consensus 283 ~~~aDri~v~l~-~G~iv~~ 301 (347)
..+||++++ |+ +|+++..
T Consensus 501 ~~~~d~i~~-l~~~g~i~~~ 519 (635)
T PRK11147 501 DNTVTECWI-FEGNGKIGRY 519 (635)
T ss_pred HHhcCEEEE-EeCCCeEEEc
Confidence 889999975 97 8998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=263.96 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=134.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+|++|++||++||+||||||||||+++|+|..+.+. ..+|+|.++|.++. ... .++.++|++|+...+
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~~------~~~-~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPID------AKE-MRAISAYVQQDDLFI 111 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC------HHH-HhhhceeeccccccC
Confidence 566999999999999999999999999999999987110 13799999998864 111 123456666665444
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCC------
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME------ 244 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~------ 244 (347)
..+ ++.+|+.++.... ......+..+++.++++.+||.+ .++..+
T Consensus 112 ~~l----------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------------~~~t~vg~~~~~ 164 (617)
T TIGR00955 112 PTL----------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-----------------CANTRIGVPGRV 164 (617)
T ss_pred ccC----------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-----------------cCcCccCCCCCC
Confidence 332 4444444433211 12234556678999999999976 234444
Q ss_pred CCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h-HHHhcccEEEEEeeCC
Q 019048 245 GDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DLLSLTDRARIRTYLG 296 (347)
Q Consensus 245 ~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~-~~~~~aDri~v~l~~G 296 (347)
..||||||||++|||+| ||||+|||. |+|+|+++| . .+..++|++++ |++|
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l-l~~G 243 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL-MAEG 243 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE-eeCC
Confidence 36999999999999999 999999883 899999999 2 67899999975 9999
Q ss_pred eEeecCCcccc
Q 019048 297 ELLGIPPAKQI 307 (347)
Q Consensus 297 ~iv~~g~~~~l 307 (347)
++++.|+++++
T Consensus 244 ~~v~~G~~~~~ 254 (617)
T TIGR00955 244 RVAYLGSPDQA 254 (617)
T ss_pred eEEEECCHHHH
Confidence 99999999877
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=280.66 Aligned_cols=194 Identities=13% Similarity=0.121 Sum_probs=145.5
Q ss_pred CcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 70 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+++++||++.|+.+ ....+ |+|||++|++|+++||+||||||||||+++|+|+.+.+. |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLDS 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECCh
Confidence 358999999999521 11345 566999999999999999999999999999999986322 678999999998741
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhcc--CCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~--~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. .++.++|++|+...+... |.+++. ++..... ..+..+..++++++++.++|.+
T Consensus 833 -------~-~~~~i~yv~Q~~~~~~~~Tv~E~L~-----------~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~---- 889 (1394)
T TIGR00956 833 -------S-FQRSIGYVQQQDLHLPTSTVRESLR-----------FSAYLRQPKSVSKSEKMEYVEEVIKLLEMES---- 889 (1394)
T ss_pred -------h-hhcceeeecccccCCCCCCHHHHHH-----------HHHHhCCCCCCCHHHHHHHHHHHHHHcCChh----
Confidence 1 234567777765433322 444443 3322111 1234455678899999999986
Q ss_pred ccceeeeeechhhhhccCCC----CCCHHHHHHHHHHHHh----------chhccCCCC----------------CCeEE
Q 019048 226 KVNFVIFVVDGLAVLKSMEG----DSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVV 275 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~----~LSgGqrQRv~IArAL----------DEPts~Ld~----------------g~tiI 275 (347)
.+++.+. +||||||||++||++| ||||+|||. |+|||
T Consensus 890 -------------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI 956 (1394)
T TIGR00956 890 -------------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAIL 956 (1394)
T ss_pred -------------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 3455554 7999999999999998 999999984 89999
Q ss_pred EEec--hH-HHhcccEEEEEeeCC-eEeecCCcc
Q 019048 276 VVTH--GD-LLSLTDRARIRTYLG-ELLGIPPAK 305 (347)
Q Consensus 276 iiTH--~~-~~~~aDri~v~l~~G-~iv~~g~~~ 305 (347)
++|| .. +...+|++++ |++| ++++.|++.
T Consensus 957 ~t~H~~~~~~~~~~D~vl~-L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 957 CTIHQPSAILFEEFDRLLL-LQKGGQTVYFGDLG 989 (1394)
T ss_pred EEecCCCHHHHHhcCEEEE-EcCCCEEEEECCcc
Confidence 9999 33 4577999975 9987 999999874
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=235.51 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=145.9
Q ss_pred CcEEEeeeEEEeCCC------------------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCC
Q 019048 70 SLTDAKNKILSYTPG------------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~------------------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~ 131 (347)
.++.++||++.|... ..+.++.| |||+|++|++++++|+|||||||++|+|+|++.
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--- 75 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--- 75 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---
Confidence 356777777777421 01356555 999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHH
Q 019048 132 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 211 (347)
Q Consensus 132 ~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~ 211 (347)
|++|.|.++|.+... ..+-.-+.+++++-... ++.+..+.+-...+...| ...+.+..+++..
T Consensus 76 --p~~G~v~V~G~~Pf~-----~~~~~~~~~~~v~gqk~---ql~Wdlp~~ds~~v~~~I-------y~Ipd~~F~~r~~ 138 (325)
T COG4586 76 --PTSGKVRVNGKDPFR-----RREEYLRSIGLVMGQKL---QLWWDLPALDSLEVLKLI-------YEIPDDEFAERLD 138 (325)
T ss_pred --cCCCeEEecCcCcch-----hHHHHHHHHHHHhhhhh---eeeeechhhhhHHHHHHH-------HhCCHHHHHHHHH
Confidence 999999999976431 00000011222221111 112333322111222222 1345677788899
Q ss_pred HHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------
Q 019048 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------ 270 (347)
Q Consensus 212 ~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------ 270 (347)
.+-+.+++++ +++++.+.||-|||.|+.||.|| ||||-+||-
T Consensus 139 ~l~eiLdl~~-----------------~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 139 FLTEILDLEG-----------------FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred HHHHHhcchh-----------------hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence 9999999998 56999999999999999999999 999999982
Q ss_pred -----CCeEEEEec--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 -----g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
++||++.|| +++..+||||++ |+.|+++.+|+.+++..
T Consensus 202 ~n~~~~aTVllTTH~~~di~~lc~rv~~-I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 202 YNEERQATVLLTTHIFDDIATLCDRVLL-IDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHhhCceEEEEecchhhHHHhhhheEE-eeCCcEeecccHHHHHH
Confidence 899999999 799999999965 99999999988776643
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=214.22 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=102.4
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++|+++.|+.. .+ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+.
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK---LL---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc---eE---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 4789999999752 24 677999999999999999999999999999999999 999999998731
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.++|+++
T Consensus 64 ---------~i~~~~~---------------------------------------------------------------- 70 (144)
T cd03221 64 ---------KIGYFEQ---------------------------------------------------------------- 70 (144)
T ss_pred ---------EEEEEcc----------------------------------------------------------------
Confidence 0112111
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHhccc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 287 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~~aD 287 (347)
||+||+||++||||| ||||++||. +.|+|++|| +.+..+||
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 999999984 789999999 57778999
Q ss_pred EEEEEeeCCe
Q 019048 288 RARIRTYLGE 297 (347)
Q Consensus 288 ri~v~l~~G~ 297 (347)
++++ |++|+
T Consensus 136 ~v~~-l~~g~ 144 (144)
T cd03221 136 KIIE-LEDGK 144 (144)
T ss_pred EEEE-EeCCC
Confidence 9975 99885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=270.99 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhc--------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRT--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
.......|+.+.+..++.... .....++++|.+++++....... |+||||+|++|+.+||+|+.|||||
T Consensus 485 qa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKS 561 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKS 561 (1381)
T ss_pred HHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHH
Confidence 344566688887655532111 12346999999999965333234 6669999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+.+|.|-++ ..+|.|.++|. ++|++|.+..+.+. +.+||.+|..
T Consensus 562 SLL~AiLGEm~-----~~sG~v~v~gs-----------------iaYv~Q~pWI~ngT-----------vreNILFG~~- 607 (1381)
T KOG0054|consen 562 SLLSAILGEMP-----KLSGSVAVNGS-----------------VAYVPQQPWIQNGT-----------VRENILFGSP- 607 (1381)
T ss_pred HHHHHHhcCcc-----cccceEEEcCe-----------------EEEeccccHhhCCc-----------HHHhhhcCcc-
Confidence 99999999999 99999999983 25677666555444 4555555443
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
-.+++.+++++.+.|++++...|++=.++|.|++. +||||||||+++|||+ |.|.|++
T Consensus 608 -------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi------nLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 608 -------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI------NLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred -------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc------CCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 33567778899999999888888888888888865 8999999999999999 9999998
Q ss_pred CC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 269 RD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 269 d~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
|. ++|+|++|| -.....||.|++ |++|+|++.|+.++++.
T Consensus 675 Dahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv-l~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV-LKDGKIVESGTYEELLK 731 (1381)
T ss_pred hHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE-ecCCeEecccCHHHHHh
Confidence 73 799999999 577788999975 99999999999999984
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=277.74 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhhhhhhhc---cCCCcEEEeeeEEEeCCCc-------------------------------eeeecCC
Q 019048 47 QRRRDAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGA-------------------------------WIENVGG 92 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~nl~~~y~~~~-------------------------------~~~~l~~ 92 (347)
......|+.+++..++.... .....++++|++|.|+... ...+
T Consensus 365 a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--- 441 (1490)
T TIGR01271 365 SLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPV--- 441 (1490)
T ss_pred HHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcc---
Confidence 34456688888765432211 1123489999999994210 0124
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ++|++|+...+
T Consensus 442 l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-----------------iayv~Q~~~l~ 499 (1490)
T TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-----------------ISFSPQTSWIM 499 (1490)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE-----------------EEEEeCCCccC
Confidence 666999999999999999999999999999999999 99999999872 25777765544
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
.+ ++.+|+.++... +. ++..++++.++|...+...+++..+ .....+..||||||
T Consensus 500 ~~-----------Ti~eNI~~g~~~----~~----~~~~~~~~~~~L~~~l~~l~~g~~t------~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 500 PG-----------TIKDNIIFGLSY----DE----YRYTSVIKACQLEEDIALFPEKDKT------VLGEGGITLSGGQR 554 (1490)
T ss_pred Cc-----------cHHHHHHhcccc----ch----HHHHHHHHHHhHHHHHHhccccccc------cccCcCCCcCHHHH
Confidence 33 455555544321 11 1122333333443322222222222 23455779999999
Q ss_pred HHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 253 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 253 QRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
||++||||+ ||||++||. ++|+|++|| ......||++++ |++|++++.|++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~-l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILL-LHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEE-EECCEEEEEcCHHH
Confidence 999999999 999999884 789999999 334456999975 99999999999988
Q ss_pred ccC
Q 019048 307 IFD 309 (347)
Q Consensus 307 l~~ 309 (347)
+..
T Consensus 634 l~~ 636 (1490)
T TIGR01271 634 LQA 636 (1490)
T ss_pred HHh
Confidence 864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=255.93 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=127.2
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE-----------ECC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 143 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~-----------~~g 143 (347)
++++++|+.+.. + |++++ .+++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~~--~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNGF--K---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCce--e---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 348999975333 4 66699 899999999999999999999999999999 9999997 888
Q ss_pred EeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 144 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 144 ~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
.++.. + .+.....+..+++.+ .++.+.+.++..++.+++.. ....+++.++++.++|..
T Consensus 146 ~~l~~-~-~~~~~~~~~~~~~~~-------q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-Y-FKKLYNGEIKVVHKP-------QYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-H-HHHHhccCcceeecc-------cchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 77641 0 000000000111222 22333333333355555431 123457888999999986
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 279 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH 279 (347)
.+++.+.+||||||||++||+|| ||||++||. |+|||+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCC
Q 019048 280 --GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G 296 (347)
+.+..+||++++ |+++
T Consensus 270 d~~~l~~~~D~v~v-l~~~ 287 (590)
T PRK13409 270 DLAVLDYLADNVHI-AYGE 287 (590)
T ss_pred CHHHHHHhCCEEEE-EeCC
Confidence 578899999965 8763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=271.88 Aligned_cols=193 Identities=9% Similarity=0.064 Sum_probs=142.5
Q ss_pred cEEEeeeEEEeCCC----------ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 71 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 71 ~l~i~nl~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
.+.++||++..+.. ...++ |+|||++|++|+++||+||||||||||+++|+|..+.+ +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48999999987421 11245 56699999999999999999999999999999987522 3689999
Q ss_pred ECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCC
Q 019048 141 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIG 218 (347)
Q Consensus 141 ~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~g 218 (347)
++|.+.. ... .++.++|++|+...+..+ ++.+++.++.... ...+..+..+.++++++.++
T Consensus 941 inG~~~~------~~~-~~~~igyv~Q~d~~~~~l----------TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 941 ISGFPKK------QET-FARISGYCEQNDIHSPQV----------TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred ECCccCC------hHH-hhhheEEEccccccCCCC----------cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 9997753 111 123456776664433332 3444444332211 11233445567899999999
Q ss_pred CCcccccccceeeeeechhhhhccCC-----CCCCHHHHHHHHHHHHh---------chhccCCCC--------------
Q 019048 219 CEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 270 (347)
Q Consensus 219 l~~~~~~~~~~~~~vvd~~~~~~~~~-----~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------- 270 (347)
|.+ ..+..+ ..||||||||++||++| ||||+|||.
T Consensus 1004 L~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~ 1066 (1470)
T PLN03140 1004 LDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066 (1470)
T ss_pred Chh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 986 345554 58999999999999999 999999983
Q ss_pred --CCeEEEEec--h-HHHhcccEEEEEeeC-CeEeecCCc
Q 019048 271 --DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPA 304 (347)
Q Consensus 271 --g~tiIiiTH--~-~~~~~aDri~v~l~~-G~iv~~g~~ 304 (347)
|+|||++|| . .+...+|++++ |++ |+++..|++
T Consensus 1067 ~~g~tVI~t~Hq~~~~i~~~~D~vll-L~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1067 DTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGQVIYSGPL 1105 (1470)
T ss_pred HCCCEEEEEeCCCCHHHHHhCCEEEE-EcCCCEEEEECCc
Confidence 899999999 3 46789999975 986 899999986
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-28 Score=219.90 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=135.3
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceee
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~ 166 (347)
+++| +||||++++||.++|||+||||||||+|+|+|.++ |++|+|.++|+-.. ...+ ..||.+
T Consensus 40 ~~aL---~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~------li~l---g~Gf~p 102 (249)
T COG1134 40 FWAL---KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP------LIEL---GAGFDP 102 (249)
T ss_pred EEEe---cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh------hhhc---ccCCCc
Confidence 4674 55999999999999999999999999999999999 99999999996422 0000 012222
Q ss_pred ccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCC
Q 019048 167 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (347)
Q Consensus 167 ~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~ 246 (347)
+-. ..+|+.+.. .. .++.+.++++++.++.+..+|.+ +++.+...
T Consensus 103 elT------GreNi~l~~-----------~~-~G~~~~ei~~~~~eIieFaELG~-----------------fi~~Pvkt 147 (249)
T COG1134 103 ELT------GRENIYLRG-----------LI-LGLTRKEIDEKVDEIIEFAELGD-----------------FIDQPVKT 147 (249)
T ss_pred ccc------hHHHHHHHH-----------HH-hCccHHHHHHHHHHHHHHHHHHH-----------------HhhCchhh
Confidence 211 244444322 11 14457889999999999999988 67999999
Q ss_pred CCHHHHHHHHHHHHh---------chhccCCC----------------CCCeEEEEec--hHHHhcccEEEEEeeCCeEe
Q 019048 247 SDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDLLSLTDRARIRTYLGELL 299 (347)
Q Consensus 247 LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tiIiiTH--~~~~~~aDri~v~l~~G~iv 299 (347)
+|.||+-|++.|-|. ||-.+.-| .+.|+|+||| +.+.++|||+++ |++|++.
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~-l~~G~i~ 226 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW-LEHGQIR 226 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEE-EeCCEEE
Confidence 999999999999998 88887744 2899999999 689999999976 9999999
Q ss_pred ecCCcccccCC
Q 019048 300 GIPPAKQIFDI 310 (347)
Q Consensus 300 ~~g~~~~l~~~ 310 (347)
..|++++++..
T Consensus 227 ~~G~~~~vi~~ 237 (249)
T COG1134 227 MEGSPEEVIPA 237 (249)
T ss_pred EcCCHHHHHHH
Confidence 99999888654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=258.07 Aligned_cols=211 Identities=9% Similarity=-0.032 Sum_probs=134.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++|++++|++. .+ |+|+||+|.+|+++||||+||||||||+|+|+|....+ .|++|+|.+.++++..
T Consensus 176 ~~I~i~nls~~y~~~---~l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g- 246 (718)
T PLN03073 176 KDIHMENFSISVGGR---DL---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVG- 246 (718)
T ss_pred eeEEEceEEEEeCCC---EE---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCC-
Confidence 469999999999742 24 66699999999999999999999999999999975211 3889999876655321
Q ss_pred cccccccc-CCCccceeeccccccccchhhhhHhhHHHHHhh-----------------hhhhhhhccCCChHHHHHHHH
Q 019048 150 YFLQEYTI-PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG-----------------VRHGELVIRRSDSSSLRNRMR 211 (347)
Q Consensus 150 ~~~~~~~~-~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~-----------------v~~~~~~~~~~~~~~~~~~i~ 211 (347)
........ ...... .........++++|++.+.......+ +..-.......+......++.
T Consensus 247 ~~~t~~~~v~~~~~~-~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIE-RTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00000000 000000 00000000122233222111000000 000000000111123456677
Q ss_pred HHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------
Q 019048 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------ 270 (347)
Q Consensus 212 ~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------ 270 (347)
++|..+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 326 ~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 326 SILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred HHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 88888888642 34788999999999999999999 999999984
Q ss_pred -CCeEEEEec--hHHHhcccEEEEEeeCCeEe-ecCCcccc
Q 019048 271 -DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 307 (347)
Q Consensus 271 -g~tiIiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l 307 (347)
+.|+|+||| +.+..+||++++ |++|+++ ..|+.+.+
T Consensus 390 ~~~tviivsHd~~~l~~~~d~i~~-l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 390 WPKTFIVVSHAREFLNTVVTDILH-LHGQKLVTYKGDYDTF 429 (718)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEeCCCHHHH
Confidence 789999999 577889999975 9999996 56665444
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=270.90 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=133.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+|+++++||+++|+||||||||||+|+|+|+.... ..|++|+|.++|+++... ....++.++|++|+...+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~-----~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEI-----KKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHH-----HhhcCceeEEeccccccC
Confidence 56699999999999999999999999999999986310 016899999999886410 011233467777765444
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhhcc------CCChHHHHHH-HHHHHHHCCCCcccccccceeeeeechhhhhccCC
Q 019048 173 SDD-ASDNINMIKLWIMEGVRHGELVIR------RSDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (347)
Q Consensus 173 ~~~-v~qn~~~~~~~v~~~v~~~~~~~~------~~~~~~~~~~-i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~ 244 (347)
..+ |.|++. ++..... ...+.+..++ ++++++.+||.+....+ +.+.++
T Consensus 151 ~~lTV~E~l~-----------f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~------------vg~~~~ 207 (1394)
T TIGR00956 151 PHLTVGETLD-----------FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK------------VGNDFV 207 (1394)
T ss_pred CCCCHHHHHH-----------HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCce------------eCCCcC
Confidence 433 455444 3322110 1223333333 45689999997622000 124456
Q ss_pred CCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec---hHHHhcccEEEEEeeC
Q 019048 245 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYL 295 (347)
Q Consensus 245 ~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH---~~~~~~aDri~v~l~~ 295 (347)
..||||||||++||++| ||||+|||. |+|+|+++| ..+..++|++++ |++
T Consensus 208 ~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~-L~~ 286 (1394)
T TIGR00956 208 RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV-LYE 286 (1394)
T ss_pred CCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE-EeC
Confidence 78999999999999999 999999983 789999999 368889999975 999
Q ss_pred CeEeecCCcccc
Q 019048 296 GELLGIPPAKQI 307 (347)
Q Consensus 296 G~iv~~g~~~~l 307 (347)
|+++..|+++++
T Consensus 287 G~iv~~G~~~~~ 298 (1394)
T TIGR00956 287 GYQIYFGPADKA 298 (1394)
T ss_pred CeEEEECCHHHH
Confidence 999999999877
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=206.76 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=133.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
++.++||+...+++ +. |-++||+|.+||++.|+||||||||||+.-+.|.+...- ..+|+++++++++.
T Consensus 2 ~l~l~nvsl~l~g~---cL---La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGS---CL---LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCc---eE---EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 57899999887653 34 667999999999999999999999999999999997332 45799999999986
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.....++++|+.+||...|..+ |.||+.+... . ..+....+..+..+|++.||+.
T Consensus 71 ---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp-----------~--~~KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 ---MLPAAQRQIGILFQDALLFPHLSVGQNLLFALP-----------A--TLKGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred ---ccchhhhheeeeecccccccccccccceEEecC-----------c--ccccHHHHhhHHHHHHHhccch--------
Confidence 2333456778888888877766 7777654321 0 1112344566778999999998
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEech
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 280 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH~ 280 (347)
+.++.|.+||||||-||++-|+| |||+|.||. |...|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 56999999999999999999998 999999873 9999999994
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=213.04 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=101.9
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccc
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 154 (347)
.||+++|++ ..+ ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~---~~~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGV---FFL---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECC---EEE---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 689999975 344 4444 9999999999999999999999999999999 9999999998542
Q ss_pred cccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeee
Q 019048 155 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 234 (347)
Q Consensus 155 ~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vv 234 (347)
++.+|+
T Consensus 64 --------~~~~q~------------------------------------------------------------------ 69 (177)
T cd03222 64 --------VYKPQY------------------------------------------------------------------ 69 (177)
T ss_pred --------EEEccc------------------------------------------------------------------
Confidence 122110
Q ss_pred chhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C-CeEEEEec--hHHHhcc
Q 019048 235 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 286 (347)
Q Consensus 235 d~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tiIiiTH--~~~~~~a 286 (347)
. .||||||||++||||| ||||++||. + .|+|++|| +.+..+|
T Consensus 70 ----~------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 70 ----I------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred ----C------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 0 0999999999999999 999999873 3 89999999 5777899
Q ss_pred cEEEEEeeCCeEeecCCcccccCCCC
Q 019048 287 DRARIRTYLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 287 Dri~v~l~~G~iv~~g~~~~l~~~~~ 312 (347)
|++++ |+++-. ..+++..|.
T Consensus 140 d~i~~-l~~~~~-----~~~~~~~~~ 159 (177)
T cd03222 140 DRIHV-FEGEPG-----VYGIASQPK 159 (177)
T ss_pred CEEEE-EcCCCc-----cceeccCCc
Confidence 99965 876633 234555554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=242.01 Aligned_cols=190 Identities=16% Similarity=0.103 Sum_probs=135.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+.+|+++|++++|+.. .+ |+++||+|.+|+++||||+||||||||||+|+|.+. |++|+|...+. .
T Consensus 1 m~~i~~~~ls~~~g~~---~l---~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~-- 66 (530)
T COG0488 1 MSMITLENLSLAYGDR---PL---LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-L-- 66 (530)
T ss_pred CceEEEeeeEEeeCCc---ee---ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-c--
Confidence 3579999999999652 33 677999999999999999999999999999999999 99999998752 1
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHH------Hhhhhh----------hh--hhccCCChHHHHHH
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWI------MEGVRH----------GE--LVIRRSDSSSLRNR 209 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v------~~~v~~----------~~--~~~~~~~~~~~~~~ 209 (347)
.+++..|+....... |.+.+......+ ++.+.. .. ......+.-..+.+
T Consensus 67 ------------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 67 ------------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred ------------eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 124556655444321 322221111000 000000 00 00001111234567
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------- 270 (347)
+..+|..+|+.+ . +++..+||||||.|++||+|| ||||+.||-
T Consensus 135 ~~~~L~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 135 AEEALLGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred HHHHHhcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 788899999987 2 678899999999999999999 999999982
Q ss_pred ----CCeEEEEec--hHHHhcccEEEEEeeCCeEeec-CCc
Q 019048 271 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGI-PPA 304 (347)
Q Consensus 271 ----g~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~-g~~ 304 (347)
| |+|+||| .++-..|++|+ .++.|++... |.-
T Consensus 197 ~~~~g-tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny 235 (530)
T COG0488 197 KRYPG-TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNY 235 (530)
T ss_pred HhCCC-cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCH
Confidence 6 9999999 58889999995 6999987654 443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=204.35 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=102.7
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccc
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 153 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 153 (347)
++|+++.|+.. .+ ++++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~~~~~~~~~~~---~~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~----- 65 (157)
T cd00267 2 IENLSFRYGGR---TA---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK----- 65 (157)
T ss_pred eEEEEEEeCCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc-----
Confidence 68999999653 34 666999999999999999999999999999999999 999999999977640
Q ss_pred ccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeee
Q 019048 154 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 233 (347)
Q Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~v 233 (347)
... .. ....++
T Consensus 66 ----------~~~-------------------------------------~~-------~~~~i~--------------- 76 (157)
T cd00267 66 ----------LPL-------------------------------------EE-------LRRRIG--------------- 76 (157)
T ss_pred ----------CCH-------------------------------------HH-------HHhceE---------------
Confidence 000 00 000011
Q ss_pred echhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHHHhcc
Q 019048 234 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLT 286 (347)
Q Consensus 234 vd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~~~~a 286 (347)
+..+||+||+||++||||+ ||||++||. +.|+|++|| ..+..+|
T Consensus 77 ---------~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~ 147 (157)
T cd00267 77 ---------YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAA 147 (157)
T ss_pred ---------EEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 1112999999999999999 999999983 589999999 5777889
Q ss_pred cEEEEEeeCCe
Q 019048 287 DRARIRTYLGE 297 (347)
Q Consensus 287 Dri~v~l~~G~ 297 (347)
|++++ |++|+
T Consensus 148 d~i~~-l~~g~ 157 (157)
T cd00267 148 DRVIV-LKDGK 157 (157)
T ss_pred CEEEE-EeCcC
Confidence 99975 88874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=267.80 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=122.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+.+ .++|++|+...+
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~-----------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER-----------------SIAYVPQQAWIM 733 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----------------eEEEEeCCCccC
Confidence 666999999999999999999999999999999999 9999998642 246777776544
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
.+.+.+|+ .++.. ...+++.++++.++++..+...++++. +..++.+.+||||||
T Consensus 734 ~~Tv~enI-----------~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~------t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 734 NATVRGNI-----------LFFDE--------EDAARLADAVRVSQLEADLAQLGGGLE------TEIGEKGVNLSGGQK 788 (1560)
T ss_pred CCcHHHHH-----------HcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccch------HHhcCCCCCCCHHHH
Confidence 33344444 33211 001112223333333221111111111 134677889999999
Q ss_pred HHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 253 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 253 QRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
||++||||| ||||++||. |+|+|++|| ......||+|++ |++|++++.|++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~-l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVA-LGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE-EECCEEEEecCHHH
Confidence 999999999 999999983 789999999 344567999975 99999999999998
Q ss_pred ccCC
Q 019048 307 IFDI 310 (347)
Q Consensus 307 l~~~ 310 (347)
++..
T Consensus 868 l~~~ 871 (1560)
T PTZ00243 868 FMRT 871 (1560)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=206.26 Aligned_cols=131 Identities=20% Similarity=0.189 Sum_probs=97.7
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceee
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~ 166 (347)
+.+ |+++||+|++|++++|+||||||||||+|+|. +++|++.++|..-. + .+..+.|
T Consensus 8 ~~~---l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~-------~--~~~~~~~-- 64 (176)
T cd03238 8 VHN---LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK-------F--SRNKLIF-- 64 (176)
T ss_pred eee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc-------c--ccccEEE--
Confidence 456 45599999999999999999999999999983 35799998764211 0 0000111
Q ss_pred ccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCC
Q 019048 167 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (347)
Q Consensus 167 ~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~ 246 (347)
++| .++++.+++... .+++++.+
T Consensus 65 ---------~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~ 87 (176)
T cd03238 65 ---------IDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLST 87 (176)
T ss_pred ---------EhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCc
Confidence 111 246777888652 13788999
Q ss_pred CCHHHHHHHHHHHHh-----------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeE
Q 019048 247 SDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 247 LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~i 298 (347)
||||||||++||||| ||||++||. |.|||++|| ......||++++ |.+|+.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~-l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIID-FGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE-ECCCCC
Confidence 999999999999998 999999873 899999999 333467999965 976544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=265.00 Aligned_cols=202 Identities=13% Similarity=0.170 Sum_probs=142.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC---CcEEEECCEeCCCCccccccccCCCccceeeccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~ 169 (347)
|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.++|+++.. .. .++.++|+.|+.
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~~------~~-~~~~i~yv~Q~d 248 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLNE------FV-PRKTSAYISQND 248 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEechh------hc-ccceeEEecccc
Confidence 556999999999999999999999999999999998 77 9999999988741 11 134567888876
Q ss_pred cccccc-hhhhhHhhHHHHHhhhhhhhhhccCCCh----------HH--------------HHHHHHHHHHHCCCCcccc
Q 019048 170 RSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDS----------SS--------------LRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 170 ~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~----------~~--------------~~~~i~~~l~~~gl~~~~~ 224 (347)
..+..+ |.|++.+.... ..............+ .+ ....+.++++.+||++..
T Consensus 249 ~~~~~lTV~EtL~f~a~~--~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~- 325 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARC--QGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK- 325 (1470)
T ss_pred cCCCcCcHHHHHHHHHHh--cCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc-
Confidence 555544 66666553221 000000000000000 00 012356789999997521
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEe
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 278 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiT 278 (347)
.+. +.++++..||||||||++||++| ||||+|||. |+|+|+++
T Consensus 326 ------~t~-----vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~ 394 (1470)
T PLN03140 326 ------DTI-----VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSL 394 (1470)
T ss_pred ------Cce-----eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 000 23667889999999999999999 999999984 78999999
Q ss_pred c---hHHHhcccEEEEEeeCCeEeecCCccccc--------CCCCCCChHHHHH
Q 019048 279 H---GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELI 321 (347)
Q Consensus 279 H---~~~~~~aDri~v~l~~G~iv~~g~~~~l~--------~~~~~~~~~~~~~ 321 (347)
| ..+..++|++++ |++|+++..|+.+++. ..|.+..+..++.
T Consensus 395 Hqp~~~i~~lfD~vil-L~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 395 LQPAPETFDLFDDIIL-LSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cCCCHHHHHHhheEEE-eeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 9 378899999975 9999999999998774 3455555544444
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=210.22 Aligned_cols=228 Identities=13% Similarity=0.185 Sum_probs=168.9
Q ss_pred CCcEEEeeeEEEeC-CCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 69 GSLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 69 ~~~l~i~nl~~~y~-~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++++.++|++..+. ....+++++. +|+++.+||+-+|||+||||||-..|+|+|..++ .+..+.-...|++.++.
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL 76 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLL 76 (330)
T ss_pred CCcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhh
Confidence 46789999999984 3344778666 9999999999999999999999999999999873 23346677788888776
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cC--C-ChHHHHHHHHHHHHHCCCCcc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RR--S-DSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~--~-~~~~~~~~i~~~l~~~gl~~~ 222 (347)
.....+.+.+-.+.+++.+|++..-. ..+..+...+....... .+ + .-...+.++.++|.++|+.+
T Consensus 77 ~L~Pr~RRk~ig~~isMIFQeP~sCL--------DPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd- 147 (330)
T COG4170 77 RLSPRERRKLVGHNVSMIFQEPQSCL--------DPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD- 147 (330)
T ss_pred cCChHHhhhhhccchhhhhcCchhhc--------ChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc-
Confidence 44443333333334445555443211 01113333322211110 00 0 01234567889999999964
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
+++++.+||.+|..|+-|+|+||.|+ ||||.++++ |.||++
T Consensus 148 -------------HkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL 214 (330)
T COG4170 148 -------------HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILL 214 (330)
T ss_pred -------------HHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEE
Confidence 24478999999999999999999999 999999653 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHH
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 323 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 323 (347)
++| ..+.++||++.| |+-|+-++.++.++++..|.|+||..++.++
T Consensus 215 ~s~Dl~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 215 ISHDLQMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred EcccHHHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 999 478899999986 9999999999999999999999998887654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=240.48 Aligned_cols=198 Identities=16% Similarity=0.188 Sum_probs=153.3
Q ss_pred cEEEeeeEEEeCCCc--eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~--~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.+.+++++..-.... ..++ |++||.++++||++||+||||||||||+++|+|....+. ..+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD- 98 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc-
Confidence 478899998875442 2345 566999999999999999999999999999999987432 57899999996543
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....++..+|+.|+...+..+ |.|.+.+... + +..+..+..+.+++++++++.+||..
T Consensus 99 ------~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~-----l----rlp~~~~~~~k~~~V~~vi~~LgL~~------ 157 (613)
T KOG0061|consen 99 ------SRSFRKISGYVQQDDVLLPTLTVRETLRFSAL-----L----RLPSSLSKEEKRERVEEVISELGLEK------ 157 (613)
T ss_pred ------hhhhhheeEEEcccccccccccHHHHHHHHHH-----h----cCCCCCCHHHHHHHHHHHHHHcCChh------
Confidence 122234457777776665554 5555543221 1 11222356788899999999999985
Q ss_pred ceeeeeechhhhhccCC-----CCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEE
Q 019048 228 NFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~-----~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIii 277 (347)
..+... ..+|||||+|++||.-| ||||+|||. |+|||++
T Consensus 158 -----------~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 158 -----------CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred -----------hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 334444 46999999999999998 999999984 9999999
Q ss_pred ec---hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 278 TH---GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 278 TH---~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
-| ..+..+-|++++ |.+|+++..|+++++
T Consensus 227 IHQPss~lf~lFD~l~l-Ls~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLL-LSEGEVVYSGSPREL 258 (613)
T ss_pred EeCCcHHHHHHHhHhhh-hcCCcEEEecCHHHH
Confidence 99 488899999975 999999999998755
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-27 Score=205.45 Aligned_cols=162 Identities=12% Similarity=0.172 Sum_probs=116.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+++.+|++..-+.. .. +.++||++.+||++-|.||||||||||+|+|+|+.+ |++|+|+++|..+...
T Consensus 2 ~L~a~~L~~~R~e~---~l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~~- 69 (209)
T COG4133 2 MLEAENLSCERGER---TL---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQNV- 69 (209)
T ss_pred cchhhhhhhccCcc---ee---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCccc-
Confidence 47788998877542 34 566999999999999999999999999999999999 9999999999877510
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
...+ .+..-|.--.......+ ++.+|+.|-...+.. .....+.+++..+||..
T Consensus 70 -~~~~---~~~l~yLGH~~giK~eL----------Ta~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g--------- 122 (209)
T COG4133 70 -RESY---HQALLYLGHQPGIKTEL----------TALENLHFWQRFHGS----GNAATIWEALAQVGLAG--------- 122 (209)
T ss_pred -hhhH---HHHHHHhhccccccchh----------hHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc---------
Confidence 0000 00001111111111122 344444433222221 12356778999999988
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH 279 (347)
+.+-+..+||-|||+|++|||-+ |||+++||. |-.||..||
T Consensus 123 --------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 --------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred --------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56889999999999999999998 999999984 667899999
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=200.71 Aligned_cols=188 Identities=16% Similarity=0.142 Sum_probs=138.5
Q ss_pred cEEEeeeEEEeCC----CceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 71 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 71 ~l~i~nl~~~y~~----~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.|.++|++|+|.- +-...++ +++||+++.||+++|-||||||||||+|+|.+-|. |++|+|++.-..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~---~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVL---RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeecCCEEeeee---eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 5889999999842 2223564 45999999999999999999999999999999999 9999999975432
Q ss_pred CCCc-cccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 147 DGTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 147 ~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
+... ....+. ++.-.+.-.+||.|.+...+. ...+-++.++. -++.+.+..+.++..+|.++++++++
T Consensus 76 ~vdl~~a~pr~--------vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a~~Ll~rLnlperL- 145 (235)
T COG4778 76 WVDLVTAEPRE--------VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKAADLLTRLNLPERL- 145 (235)
T ss_pred hhhhhccChHH--------HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCCHHH-
Confidence 1000 011111 111122334555555555554 33455555554 34566788889999999999999865
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH 279 (347)
.+-.|..+|||+||||.|||.+ ||||++||. |.++|=|=|
T Consensus 146 ---------------W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH 210 (235)
T COG4778 146 ---------------WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210 (235)
T ss_pred ---------------hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec
Confidence 4668999999999999999998 999999984 899999999
Q ss_pred h-HH-HhcccEEEE
Q 019048 280 G-DL-LSLTDRARI 291 (347)
Q Consensus 280 ~-~~-~~~aDri~v 291 (347)
| .+ ...|||+.-
T Consensus 211 Deevre~vadR~~~ 224 (235)
T COG4778 211 DEEVREAVADRLLD 224 (235)
T ss_pred cHHHHHHHhhheee
Confidence 3 44 357999953
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=194.99 Aligned_cols=128 Identities=14% Similarity=0.187 Sum_probs=91.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.++.. ......++.+++++++...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~ 71 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD----IDIEELRRRIGYVPQDPQLF 71 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT----SHHHHHHHTEEEEESSHCHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc----cccccccccccccccccccc
Confidence 567999999999999999999999999999999999 999999999999862 00111122334444443322
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
..+ ++.++ ...+++.++++.+++.... ....++.+.+||+|||
T Consensus 72 ~~~----------tv~~~--------------~~~~~~~~~l~~l~~~~~~-------------~~~~~~~~~~LS~Ge~ 114 (137)
T PF00005_consen 72 PGL----------TVREN--------------ESDERIEEVLKKLGLEDLL-------------DRKIGQRASSLSGGEK 114 (137)
T ss_dssp TTS----------BHHHH--------------HHHHHHHHHHHHTTHGGGT-------------GSBGTSCGGGSCHHHH
T ss_pred ccc----------ccccc--------------ccccccccccccccccccc-------------ccccccccchhhHHHH
Confidence 222 12222 2344577788888876511 0123555599999999
Q ss_pred HHHHHHHHh---------chhcc
Q 019048 253 YNQIVATTF---------NCPYL 266 (347)
Q Consensus 253 QRv~IArAL---------DEPts 266 (347)
||++||||| ||||+
T Consensus 115 ~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 115 QRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 999999999 99995
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=205.78 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred HHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC---------
Q 019048 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 270 (347)
Q Consensus 211 ~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~--------- 270 (347)
.++++.+++.+. .+++++.+|||||+||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 567999999752 24889999999999999999987 999999873
Q ss_pred -------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecC
Q 019048 271 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 302 (347)
Q Consensus 271 -------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g 302 (347)
|.|+|+||| .....+||++++ | ++|+|+++|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~~-l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVID-IGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEEE-eCCCccccCCEEEecC
Confidence 889999999 333468999975 9 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=243.24 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=160.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..+.++|+++.|+.... ++++ +||.|++||+.++.|+|||||||++|+|.|..+ |++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~- 631 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITV- 631 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCcccc-
Confidence 46899999999976432 6555 999999999999999999999999999999999 999999999988751
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.......++.+||++|.-.....+ ..|...++.. .++.++.++.+.++++++.++|.+
T Consensus 632 --~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar------------lrG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 632 --STDFQQVRKQLGYCPQFDALWEELTGREHLEFYAR------------LRGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred --ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHH------------HcCCChhHHHHHHHHHHHHcCChh-------
Confidence 111111355678888875544444 4444444322 235566788888999999999988
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
.+++....+|||+|+|+++|.|+ ||||+|+|+ |+.+|+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 45888999999999999999999 999999985 559999999 78
Q ss_pred HHhcccEEEEEeeCCeEeecCCccccc
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 9999999987 9999999999998774
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=219.72 Aligned_cols=178 Identities=13% Similarity=0.161 Sum_probs=134.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
..+++++|+++.|+++..+ ++++||.|.+|+.+|||||||+|||||+|+|+|... |.+|.|.+.-. +.
T Consensus 319 ~~vl~~~~~~~~y~~~~~l-----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~~-v~- 386 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGET-VK- 386 (530)
T ss_pred CeeEEEeccccccCCCcee-----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCCc-eE-
Confidence 4579999999999765333 666999999999999999999999999999999999 99999998642 32
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
++|..|+..... . ..++.+.+..... ......++.+|..+++..+.
T Consensus 387 -------------igyf~Q~~~~l~----~-----~~t~~d~l~~~~~-------~~~e~~~r~~L~~f~F~~~~----- 432 (530)
T COG0488 387 -------------IGYFDQHRDELD----P-----DKTVLEELSEGFP-------DGDEQEVRAYLGRFGFTGED----- 432 (530)
T ss_pred -------------EEEEEehhhhcC----c-----cCcHHHHHHhhCc-------cccHHHHHHHHHHcCCChHH-----
Confidence 255555542211 0 0022233321110 11156788899999998743
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
..+++..||||||-|+.+|+.+ ||||+.||- .-|||+||| .++..
T Consensus 433 -----------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 433 -----------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred -----------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 3788999999999999999998 999999982 678999999 58899
Q ss_pred cccEEEEEeeCCeEeec-CCcc
Q 019048 285 LTDRARIRTYLGELLGI-PPAK 305 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~-g~~~ 305 (347)
+|+++++ +.+ ++... |..+
T Consensus 502 va~~i~~-~~~-~~~~~~g~y~ 521 (530)
T COG0488 502 VATRIWL-VED-KVEEFEGGYE 521 (530)
T ss_pred hcceEEE-EcC-ceeEcCCCHH
Confidence 9999975 776 55544 5443
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=208.12 Aligned_cols=182 Identities=14% Similarity=0.219 Sum_probs=134.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
-||++|+.|.|...... +.-||++|++||++-|+|.||||||||+++|.|+++ |++|+|++||+++.
T Consensus 322 ~lelrnvrfay~~~~Fh-----vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~--- 388 (546)
T COG4615 322 TLELRNVRFAYQDNAFH-----VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS--- 388 (546)
T ss_pred ceeeeeeeeccCcccce-----ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC---
Confidence 49999999999765433 444999999999999999999999999999999999 99999999999886
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
+-.+.+.|....-||.+..++...+ +.+.....+.+..+|+++.+.++..
T Consensus 389 ------------~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~kts------ 438 (546)
T COG4615 389 ------------AEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTS------ 438 (546)
T ss_pred ------------CCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhc------
Confidence 3456666766666777776665432 1111122345666777776655321
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh--chhccCCC------------------------CCCeEEEEec-hHHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFR------------------------DDKPVVVVTH-GDLL 283 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL--DEPts~Ld------------------------~g~tiIiiTH-~~~~ 283 (347)
|.|. +-.+-.||-|||+|+++--|+ |-|.--|| .|+||+.||| +.-.
T Consensus 439 --l~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 --LNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred --ccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 1111 113457999999999999998 44443333 1999999999 5566
Q ss_pred hcccEEEEEeeCCeEeecC
Q 019048 284 SLTDRARIRTYLGELLGIP 302 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g 302 (347)
..|||+. .|.+|++++.-
T Consensus 513 ~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 513 IHADRLL-EMRNGQLSELT 530 (546)
T ss_pred hhHHHHH-HHhcCceeecc
Confidence 7899995 59999999874
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=196.30 Aligned_cols=183 Identities=17% Similarity=0.076 Sum_probs=113.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHh-----hcccCCCCCCCCc-----------EEEECCEeCCCCccccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERA-----------QVTYNSSVGDGTYFLQEYT 156 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~-----gl~~~~~~~p~~G-----------~I~~~g~~i~~~~~~~~~~ 156 (347)
|+|+|++|+.|.+++|.|+||||||||++.+. ..+......|..+ -|.++..++....-.....
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 78899999999999999999999999999662 2111100002222 2444544442110000000
Q ss_pred cCCCccceeeccccc----------------cccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCC
Q 019048 157 IPRGSNSFSLYDTRS----------------LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 219 (347)
Q Consensus 157 ~~r~~~~~~~~~~~~----------------~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl 219 (347)
+..++++.|. ...+..+++..... ++.+++.+-.. . .. ..++.++++.+||
T Consensus 91 -----y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~----~--~~-~~~~~~~L~~vgL 158 (261)
T cd03271 91 -----YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN----I--PK-IARKLQTLCDVGL 158 (261)
T ss_pred -----HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh----h--hh-HHHHHHHHHHcCC
Confidence 0011111111 11122233333222 44444432111 0 11 2456778999999
Q ss_pred CcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC----------------C
Q 019048 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------D 271 (347)
Q Consensus 220 ~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g 271 (347)
... .+++.+.+|||||+||++|||+| ||||++||. |
T Consensus 159 ~~l----------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g 222 (261)
T cd03271 159 GYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG 222 (261)
T ss_pred chh----------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 762 14888999999999999999998 999999873 8
Q ss_pred CeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCc
Q 019048 272 KPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPA 304 (347)
Q Consensus 272 ~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~ 304 (347)
.|+|+||| ......||++++ | ++|++++.|++
T Consensus 223 ~tvIiitH~~~~i~~aD~ii~-Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 223 NTVVVIEHNLDVIKCADWIID-LGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEEeCCHHHHHhCCEEEE-ecCCcCCCCCEEEEeCCC
Confidence 99999999 334467999965 9 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-25 Score=193.15 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=140.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+++++||...- . |--+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.++..
T Consensus 3 l~qln~v~~~t-----R-----L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l~~-- 64 (248)
T COG4138 3 LMQLNDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPLEA-- 64 (248)
T ss_pred eeeeccccccc-----c-----ccccccccccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcchhH--
Confidence 57788887642 1 444899999999999999999999999999999984 89999999998851
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.| .-.|.-|.-.....+ |||.+.+. .+.+.....+.++..+++++++
T Consensus 65 -~~~~eLAr-hRAYLsQqq~p~f~mpV~~YL~L~-----------------qP~~~~a~~i~~i~~~L~l~DK------- 118 (248)
T COG4138 65 -WSATELAR-HRAYLSQQQTPPFAMPVWHYLTLH-----------------QPDKTRTELLNDVAGALALDDK------- 118 (248)
T ss_pred -HhHhHHHH-HHHHHhhccCCcchhhhhhhhhhc-----------------CchHHHHHHHHHHHhhhcccch-------
Confidence 11111111 112333322222222 44444331 1234556678888999999984
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh----------------chhccCCCC----------------CCeEEEE
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tiIii 277 (347)
+.+..++||||+.|||-+|-.. |||.++||- |.+|||.
T Consensus 119 ----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 119 ----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4889999999999999999876 999999872 9999999
Q ss_pred ec--hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 278 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+| +...+.||++++ ++.|+++..|..++++..
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTP 222 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcCh
Confidence 99 678889999987 999999999999988764
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-23 Score=188.05 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=96.6
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCC----CCCCcEEEECCEeCCCCccccccccCCCccceeeccc
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF----ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~----~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~ 169 (347)
++++|++++| +++|+||||||||||+++|++++..... .+..|++.+.|+++. . ...++.+++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~v~~----- 80 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR------K-PANFAEVTL----- 80 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC------C-CCceEEEEE-----
Confidence 4599999999 9999999999999999999999861100 012345666555432 0 001123344
Q ss_pred cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCH
Q 019048 170 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (347)
Q Consensus 170 ~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSg 249 (347)
++|++..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 81 ------vfq~~~~~---------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 81 ------TFDNSDGR---------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred ------EEEcCCCc---------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 44444332 0000 12345556665 22 24778899999
Q ss_pred HHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEee
Q 019048 250 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTY 294 (347)
Q Consensus 250 GqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~ 294 (347)
|||||++||++| ||||++||. +.|||++|| .....+||+++. ++
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~-~~ 189 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG-VT 189 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE-EE
Confidence 999999999974 999999873 789999999 344578999965 54
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-22 Score=189.36 Aligned_cols=182 Identities=10% Similarity=-0.018 Sum_probs=106.3
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECCE-eCCCCccccccccCCCccceeeccccccccch
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g~-~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v 176 (347)
.+.+| +++||||||||||||+++|++++. +. .|++.+.+. ++.. ........+..+++.+|+..... +
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~--~~~~~~~~~~~v~~~fq~~~~~~--~ 91 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIY--KRGQAGITKASVTIVFDNSDKSQ--S 91 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhh--cCCCCCCcEEEEEEEEEcCCccc--C
Confidence 33444 999999999999999999999998 65 457887765 3210 00001112224556666532100 0
Q ss_pred hhhhHhhHH-HHHhhhhhhhhhccCC-ChHHHHHHHHHHHHHCCCCcccc---cccceeeeeechhhhhccCCCCCCHHH
Q 019048 177 SDNINMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVI---RKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (347)
Q Consensus 177 ~qn~~~~~~-~v~~~v~~~~~~~~~~-~~~~~~~~i~~~l~~~gl~~~~~---~~~~~~~~vvd~~~~~~~~~~~LSgGq 251 (347)
+....+.+. ++.+++..+....... .+....+++.++|+.+++...-. -.-.-+.-+++..+..+.++.+||+||
T Consensus 92 ~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~ 171 (251)
T cd03273 92 PIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQ 171 (251)
T ss_pred cccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHH
Confidence 000000000 2222232221110001 12234477888999999862100 000000111222235578899999999
Q ss_pred HHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEE
Q 019048 252 QYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 290 (347)
Q Consensus 252 rQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~ 290 (347)
|||++||||| ||||++||. |.|+|+||| ..+...||+++
T Consensus 172 ~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 172 RSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 9999999965 999999873 889999999 67777899995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=193.76 Aligned_cols=196 Identities=14% Similarity=0.131 Sum_probs=146.7
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..+.++++|++..- . ++|+||++++||+++|.|--|||+|-|+++|.|..+ +.+|+|.++|+++.
T Consensus 260 ~~~~l~v~~l~~~~-----~-----~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~ 324 (500)
T COG1129 260 GEPVLEVRNLSGGG-----K-----VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVR 324 (500)
T ss_pred CCcEEEEecCCCCC-----c-----eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEcc
Confidence 35678999987532 2 666999999999999999999999999999999888 89999999999886
Q ss_pred CCccccccccCCCccceeeccccccc---cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLS---DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~---~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
..++. ...+..++|++.|..... .+ +.+|+.+... .... .....+....++.+.++.+.+++....
T Consensus 325 ~~sp~---~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l---~~~~----~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 325 IRSPR---DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL---RRFS----RRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred CCCHH---HHHHcCCEeCCcccccCcCcCCCcHHHheehHhh---hhhc----cccccChHHHHHHHHHHHHhcCcccCC
Confidence 33321 122346788888865321 22 4455444310 0000 000234555566788889999886422
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC----------------CCCeEEEEe
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 278 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tiIiiT 278 (347)
.+.....||||-||+|.|||.| ||||.|.| +|++|||||
T Consensus 395 ----------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iS 458 (500)
T COG1129 395 ----------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458 (500)
T ss_pred ----------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEe
Confidence 2678899999999999999999 99999976 299999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcc
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~ 305 (347)
- .++..+||||+| |++|+++..-+.+
T Consensus 459 SElpEll~~~DRIlV-m~~Gri~~e~~~~ 486 (500)
T COG1129 459 SELPELLGLSDRILV-MREGRIVGELDRE 486 (500)
T ss_pred CChHHHHhhCCEEEE-EECCEEEEEeccc
Confidence 9 689999999975 9999999865443
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=194.26 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=122.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
...|+++|++..-+++... |++.||+|++|+.+.|.||||||||||+|+|+|+.+ .-+|+|.+-...
T Consensus 390 ~~~i~~~nl~l~~p~~~~l-----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~--- 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTL-----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS--- 456 (604)
T ss_pred cceeEEeeeeEECCCCCee-----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC---
Confidence 4679999999999876544 677999999999999999999999999999999999 777887764111
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+-|.+| .|.+...+..+.++++..... ...+.+.++|.++||.+-.
T Consensus 457 ------------~~lflpQ-----------~PY~p~GtLre~l~YP~~~~~-----~~d~~l~~vL~~vgL~~L~----- 503 (604)
T COG4178 457 ------------ALLFLPQ-----------RPYLPQGTLREALCYPNAAPD-----FSDAELVAVLHKVGLGDLA----- 503 (604)
T ss_pred ------------ceEEecC-----------CCCCCCccHHHHHhCCCCCCC-----CChHHHHHHHHHcCcHHHH-----
Confidence 0123444 333333345555665443211 2345677889999998621
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 283 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~ 283 (347)
.-+|+. ++--..||+|||||+++||.| ||.|++||+ ++|||-|+| ..+.
T Consensus 504 ---~rl~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 504 ---ERLDEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred ---HHHhcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 111222 233446999999999999999 999999984 899999999 5666
Q ss_pred hcccEE
Q 019048 284 SLTDRA 289 (347)
Q Consensus 284 ~~aDri 289 (347)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666665
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=175.43 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=102.3
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEec-CCeEEEEECCCCChHHHHHHHHhhcc-cCCCCCCCCcEEEECC-EeCCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVF-ENDKFASERAQVTYNS-SVGDG 148 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~-~Ge~~aIvGpnGsGKSTLlk~L~gl~-~~~~~~p~~G~I~~~g-~~i~~ 148 (347)
|+++|+. +|... ++++|+.. +|++++|+||||||||||+++|++.+ . +..+....+. .+..
T Consensus 6 i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~~~~- 69 (213)
T cd03279 6 LELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLRSVF- 69 (213)
T ss_pred EEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHHHHh-
Confidence 7888888 66432 22677654 58999999999999999999999644 3 3444443321 0100
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
........+++.++...... .+...+ ..+.....+.+ .+...++..
T Consensus 70 -----~~~~~~~~v~~~f~~~~~~~-~~~r~~-------------------gl~~~~~~~~~--~l~~g~l~~------- 115 (213)
T cd03279 70 -----APGEDTAEVSFTFQLGGKKY-RVERSR-------------------GLDYDQFTRIV--LLPQGEFDR------- 115 (213)
T ss_pred -----cCCCccEEEEEEEEECCeEE-EEEEec-------------------CCCHHHHHHhh--hhhhcchHH-------
Confidence 00011222344554432111 011111 11112111111 233333444
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-------------------chhccCCCC----------------CCe
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKP 273 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~t 273 (347)
++++++..||+||+||++||||| ||||++||. +.|
T Consensus 116 ----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 116 ----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 56888999999999999999854 999999873 789
Q ss_pred EEEEec--hHHHhcccEEEEEeeCCe
Q 019048 274 VVVVTH--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 274 iIiiTH--~~~~~~aDri~v~l~~G~ 297 (347)
+|+||| +.+..+||++++ +++|-
T Consensus 186 ii~itH~~~~~~~~~~~i~~-~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLEV-IKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEEE-EecCC
Confidence 999999 578889999975 98874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-21 Score=192.21 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=129.6
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+.|.+.++|++|.|.++.. . +++++|-|..++.+|+|||||||||||||+++|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~--i---y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPM--I---YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcch--h---hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 3578999999999976543 3 667999999999999999999999999999999999 99998875432211
Q ss_pred CCccccccccCCCccceeeccccccccchhhhhH---hhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~---~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
+ .+ .|+.. .+..+..+++.. ..+.....+.++.++.++||..+.
T Consensus 456 ---------------~-------~y----~Qh~~e~ldl~~s~le~~~~------~~~~~~~~e~~r~ilgrfgLtgd~- 502 (614)
T KOG0927|consen 456 ---------------P-------RY----NQHLAEQLDLDKSSLEFMMP------KFPDEKELEEMRSILGRFGLTGDA- 502 (614)
T ss_pred ---------------h-------hh----hhhhHhhcCcchhHHHHHHH------hccccchHHHHHHHHHHhCCCccc-
Confidence 0 00 01100 001122222221 111123456788899999998643
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--h
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 280 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~ 280 (347)
...+..+||+|||.||..|+.+ ||||++||- .-+||++|| .
T Consensus 503 ---------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 503 ---------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFR 567 (614)
T ss_pred ---------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhh
Confidence 3778899999999999999998 999999982 557999999 4
Q ss_pred HHHhcccEEEEEeeCCeEee-cCCc
Q 019048 281 DLLSLTDRARIRTYLGELLG-IPPA 304 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~-~g~~ 304 (347)
.+..+|+++++ ..+|.+.. .|..
T Consensus 568 lI~qVaeEi~~-c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 568 LISQVAEEIWV-CENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHHHhHh-hccCceeecCccH
Confidence 78899999986 77766543 4543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=183.65 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=155.4
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC-
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG- 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i- 146 (347)
..++|++++|+..-..+ ... +++|||+|++||+++|.|=.|-|-+-|+.+|+|+.+ +.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~--~~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG--VTA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCC--Cce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 45789999999876433 344 556999999999999999999999999999999998 8889999999997
Q ss_pred CCCccccccccCCCccceeeccccccc---cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLS---DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
... ......+..++|++.|..... .+ +.+|..+.... . .++...+..+...+.+.+.++.+.+++...
T Consensus 324 ~~~---~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~---~--~~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 324 GRL---SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD---K--KPFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred ccC---CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc---c--cccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 211 122233456789998875432 22 44554332110 0 001112234567888889999999988632
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIii 277 (347)
- ...+...||||.+||+-+||-| ..||-|||- |++|++|
T Consensus 396 ~----------------~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 396 S----------------PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred C----------------CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1 2566789999999999999999 899999872 9999999
Q ss_pred ec--hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 278 TH--GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
|- +++..+||||+| |++|+++...++++
T Consensus 460 S~dLDEil~lsDrIaV-i~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAV-IYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeee-eeCCceeccccccc
Confidence 99 799999999986 99999999887754
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=174.35 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=46.5
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEE
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 290 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~ 290 (347)
.+..+.+||||||||++||||| ||||++||. +.|+|++|| ..+.++||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3678899999999999999976 999999873 778898899 67889999997
Q ss_pred EEee
Q 019048 291 IRTY 294 (347)
Q Consensus 291 v~l~ 294 (347)
+ |.
T Consensus 232 ~-l~ 234 (243)
T cd03272 232 G-VK 234 (243)
T ss_pred E-EE
Confidence 5 54
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=185.30 Aligned_cols=205 Identities=14% Similarity=0.092 Sum_probs=131.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE--CCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~--~g~~i~ 147 (347)
.-+.+.|+++.|.+ +.. ++|++|++.+|+.++|+|+|||||||+|++|.|-.. |..-.+.+ -.+++.
T Consensus 74 ~dvk~~sls~s~~g---~~l---~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~ 142 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VEL---IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIE 142 (614)
T ss_pred ccceeeeeeeccCC---cee---eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCC
Confidence 34999999999975 344 666999999999999999999999999999999887 65444432 222221
Q ss_pred CCccccccccCCCccceee---ccccccccchhhhhHhh-HHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 148 GTYFLQEYTIPRGSNSFSL---YDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~---~~~~~~~~~v~qn~~~~-~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
++... .+..++ ...+....+..++.... ...-.+....-.......+......++..+|.-+|...+
T Consensus 143 ----ps~~~----av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~- 213 (614)
T KOG0927|consen 143 ----PSEKQ----AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE- 213 (614)
T ss_pred ----CchHH----HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh-
Confidence 00000 000111 00111111111111110 000000000001111122344556677778888888764
Q ss_pred ccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CC-eEEEEec-
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-PVVVVTH- 279 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~-tiIiiTH- 279 (347)
...+....||||+|.|+++||+| ||||++||- .. ++|+++|
T Consensus 214 ---------------m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~ 278 (614)
T KOG0927|consen 214 ---------------MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHS 278 (614)
T ss_pred ---------------HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecc
Confidence 35788899999999999999999 999999983 44 8999999
Q ss_pred -hHHHhcccEEEEEeeCCe-EeecCCcccccCC
Q 019048 280 -GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 310 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~-iv~~g~~~~l~~~ 310 (347)
+.+-.+|..|+ .|+.++ +...|+-++....
T Consensus 279 QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 279 QDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred hhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 78889999995 699999 5667777665544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=193.89 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=78.3
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------- 270 (347)
..++++.+||... .+++.+.+|||||+||+.||++| ||||++||.
T Consensus 810 ~l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~ 873 (943)
T PRK00349 810 KLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL 873 (943)
T ss_pred HHHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH
Confidence 4567889999752 14788999999999999999998 999999873
Q ss_pred ---------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 ---------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| ......||++++ | ++|++++.|++++++..+. ++|..++.
T Consensus 874 ~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~-Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l~ 938 (943)
T PRK00349 874 EVLHRLVDKGNTVVVIEHNLDVIKTADWIID-LGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYLK 938 (943)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-ecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHHH
Confidence 899999999 344467999965 9 7999999999999988766 66777664
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=200.59 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhh-hccCCCCCCHHHHHHHHHHHHh------------chhccCCCC
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD 270 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~-~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~ 270 (347)
....+++ ++++.+||.. + +++.+.+|||||+||++||||| ||||++||.
T Consensus 784 ~~i~~~l-~~L~~vGL~~-----------------l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~ 845 (1809)
T PRK00635 784 PSIHEKI-HALCSLGLDY-----------------LPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT 845 (1809)
T ss_pred HHHHHHH-HHHHHcCCcc-----------------hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCH
Confidence 4555666 5789999976 3 4889999999999999999998 999999873
Q ss_pred ----------------CCeEEEEec--hHHHhcccEEEEEee------CCeEeecCCcccccC
Q 019048 271 ----------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQIFD 309 (347)
Q Consensus 271 ----------------g~tiIiiTH--~~~~~~aDri~v~l~------~G~iv~~g~~~~l~~ 309 (347)
|.|||+||| +.+ .+||++++ |. +|+++..|++++++.
T Consensus 846 ~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~-L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 846 HDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLE-LGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEE-EccCCCCCCCEEEEeCCHHHHHh
Confidence 899999999 445 89999965 95 799999999999875
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=178.07 Aligned_cols=187 Identities=16% Similarity=0.063 Sum_probs=125.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|++++|++.-+.++. .. ++|+||+|+.|+.+.|.||||||||+|+|+|.||++ ..+|.+..-.....
T Consensus 432 n~i~~e~v~l~tPt~g~-~l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~-- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGD-LL---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP-- 500 (659)
T ss_pred ceEEeeeeeecCCCCCc-ee---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC--
Confidence 57999999999876322 23 566999999999999999999999999999999998 78999876432210
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
+.+-|++|.+- +...+..+++.++........+....+++.+.|+.++|.+-+ ++..+
T Consensus 501 ----------~~lfflPQrPY-----------mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~-~r~gg 558 (659)
T KOG0060|consen 501 ----------KDLFFLPQRPY-----------MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL-EREGG 558 (659)
T ss_pred ----------CceEEecCCCC-----------ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH-HHhCC
Confidence 01224555443 333344455555433221212222345566667777665411 11111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec-hHHHhcc
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH-~~~~~~a 286 (347)
+.--+ -..-...||+||+||+++||.+ ||-||+++. |+|.|-|+| ..+.++-
T Consensus 559 ld~~~-----~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 559 LDQQV-----DWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred CCchh-----hccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 11000 0122346999999999999998 999999873 999999999 6888888
Q ss_pred cEEEEEeeC
Q 019048 287 DRARIRTYL 295 (347)
Q Consensus 287 Dri~v~l~~ 295 (347)
|.+. .|+.
T Consensus 634 d~~L-~~~g 641 (659)
T KOG0060|consen 634 DYVL-RMDG 641 (659)
T ss_pred hEEE-EecC
Confidence 9884 4654
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=169.59 Aligned_cols=190 Identities=15% Similarity=0.060 Sum_probs=103.7
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe--CCCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--GDGT 149 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~--i~~~ 149 (347)
|+++|. +.|.. . .+|...++ +++|+||||||||||+.+|++++. +..|.+...+.+ +...
T Consensus 4 i~l~nf-~~~~~---~--------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~r~~~~~~~i~~~ 65 (247)
T cd03275 4 LELENF-KSYKG---R--------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-----EKSSHLRSKNLKDLIYRA 65 (247)
T ss_pred EEEECc-cccCC---C--------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-----CCcccccccchhhhcccC
Confidence 667775 45642 1 23444455 999999999999999999999997 666776554321 1000
Q ss_pred ccccccccCCCccceee--ccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSL--YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~--~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.... .......+...+ ++.... +... .+.++.. .+. ...+....+.+.++++.+|++... .
T Consensus 66 ~~~~-~~~~~~~v~~~f~~~~~~~~---~~~~------~~~~~~~-~~~---ingk~~s~~~~~~~l~~~gi~~~~---~ 128 (247)
T cd03275 66 RVGK-PDSNSAYVTAVYEDDDGEEK---TFRR------IITGGSS-SYR---INGKVVSLKEYNEELEKINILVKA---R 128 (247)
T ss_pred cccc-CCCceEEEEEEEEcCCCcEE---EEEE------EEECCce-EEE---ECCEEecHHHHHHHHHHhCCCCCC---C
Confidence 0000 000000111111 111000 0000 0000000 000 001112234556788889986421 1
Q ss_pred ceeeeeechhhhhcc--------CCCCCCHHHHHHHHHHHHh-------------chhccCCCC----------------
Q 019048 228 NFVIFVVDGLAVLKS--------MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------- 270 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~--------~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------- 270 (347)
+.++.-=+-..+.+. ++.+||+|||||++||+|+ ||||++||.
T Consensus 129 ~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~ 208 (247)
T cd03275 129 NFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP 208 (247)
T ss_pred eEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC
Confidence 222210000122233 3489999999999999976 999999873
Q ss_pred CCeEEEEec-hHHHhcccEEEEEeeCC
Q 019048 271 DKPVVVVTH-GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 271 g~tiIiiTH-~~~~~~aDri~v~l~~G 296 (347)
|.|+|+||| ..+..+||+++++.+++
T Consensus 209 g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 209 NFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred CcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 789999999 56678899997744454
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-20 Score=172.10 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=48.0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEE
Q 019048 239 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 289 (347)
Q Consensus 239 ~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri 289 (347)
..++++..||+|||||++||||+ ||||++||+ +.|+|++|| ..+.++|||+
T Consensus 120 ~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v 199 (212)
T cd03274 120 KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRL 199 (212)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEE
Confidence 34778899999999999999854 999999874 678999999 7888999999
Q ss_pred EEEeeC
Q 019048 290 RIRTYL 295 (347)
Q Consensus 290 ~v~l~~ 295 (347)
++ |..
T Consensus 200 ~~-~~~ 204 (212)
T cd03274 200 VG-IYK 204 (212)
T ss_pred EE-EEe
Confidence 65 764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-19 Score=194.51 Aligned_cols=178 Identities=10% Similarity=0.068 Sum_probs=129.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+||+=-++||-.+||+|+|||||||||++|+|-...+ ..+|+|+++|.+.. . .-.++..||+-|+
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~------q-~tF~R~~GYvqQ~---- 872 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKD------Q-ETFARVSGYVEQQ---- 872 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCc------h-hhhccccceeecc----
Confidence 55599999999999999999999999999999976533 56899999998764 1 1112234555443
Q ss_pred ccchhhhhHhhHH-HHHhhhhhhhhh--ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCH
Q 019048 173 SDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (347)
Q Consensus 173 ~~~v~qn~~~~~~-~v~~~v~~~~~~--~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSg 249 (347)
....+. +|.+-+.+.... ....+.++..+.++++++.++|++-. ..+...+...||.
T Consensus 873 -------DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------------daiVG~~G~GLs~ 932 (1391)
T KOG0065|consen 873 -------DIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------------DALVGLPGSGLST 932 (1391)
T ss_pred -------cccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------------hhhccCCCCCCCH
Confidence 322222 555555544321 22334556668899999999998611 0022334455999
Q ss_pred HHHHHHHHHHHh----------chhccCCCC----------------CCeEEEEec---hHHHhcccEEEEEee-CCeEe
Q 019048 250 EKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRTY-LGELL 299 (347)
Q Consensus 250 GqrQRv~IArAL----------DEPts~Ld~----------------g~tiIiiTH---~~~~~~aDri~v~l~-~G~iv 299 (347)
.||+|+.||--| ||||||||. |.||+..-| .++.+.-|++.+ |+ .|+.|
T Consensus 933 eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-LkrGGqtV 1011 (1391)
T KOG0065|consen 933 EQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LKRGGQTV 1011 (1391)
T ss_pred HHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-HhcCCeEE
Confidence 999999999877 999999984 999999999 477888899976 76 57999
Q ss_pred ecCCcc
Q 019048 300 GIPPAK 305 (347)
Q Consensus 300 ~~g~~~ 305 (347)
..|+.-
T Consensus 1012 Y~G~lG 1017 (1391)
T KOG0065|consen 1012 YFGPLG 1017 (1391)
T ss_pred EecCcc
Confidence 988864
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=154.93 Aligned_cols=192 Identities=14% Similarity=0.074 Sum_probs=128.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
...|++.++.|.|+...+. +-|+|++++.|....+||.||||||||+|+|+|-.- .-.|.|.+.|++--.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 3469999999999766655 677999999999999999999999999999999765 556999999976310
Q ss_pred CccccccccC-CCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIP-RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~-r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.-.+. .....|.--++....+...+-|......+ +...++.. + ... ++-+++.+.+.++-
T Consensus 81 -----Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~---g-~dp---~Rre~LI~iLDIdl------ 141 (291)
T KOG2355|consen 81 -----DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVG---G-DDP---ERREKLIDILDIDL------ 141 (291)
T ss_pred -----cccccccCceeEecccccccccccccccccccccH-HHHHhhcc---C-CCh---hHhhhhhhheeccc------
Confidence 11110 00112222222221111111111100011 11111111 1 111 33444556665553
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+..+.+|-|||+||.|++.| ||-|--||- |.||+..||
T Consensus 142 -------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 142 -------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred -------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 667889999999999999998 999988761 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~ 303 (347)
+-++.++.+++ .|+.|+++..-+
T Consensus 209 DGLe~Wpthl~-yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 209 DGLETWPTHLV-YIKSGKLVDNLK 231 (291)
T ss_pred cchhhcchhEE-EecCCeeeeccc
Confidence 78899999996 599999987433
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=183.57 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=67.7
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------- 270 (347)
..++++.+||... .+++.+.+|||||+||++||++| ||||++||.
T Consensus 808 ~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~ 871 (924)
T TIGR00630 808 KLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL 871 (924)
T ss_pred HHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 4567888999752 24788999999999999999998 999999873
Q ss_pred ---------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccc
Q 019048 271 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 307 (347)
Q Consensus 271 ---------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l 307 (347)
|.|||+||| ......||++++ | ++|++++.|+++++
T Consensus 872 ~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~-Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 872 EVLQRLVDQGNTVVVIEHNLDVIKTADYIID-LGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE-ecCCccCCCCEEEEeCCHHHh
Confidence 899999999 344467999965 9 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=157.21 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=91.1
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHh----hcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~----gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~ 171 (347)
.++++.+| +++|+||||||||||+++|. |... |+.|.+..+...+. ....+..+++.+++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~-------~~~~~~~v~~~f~~~~- 81 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIR-------EGEVRAQVKLAFENAN- 81 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHh-------CCCCcEEEEEEEEeCC-
Confidence 45667778 99999999999999999995 6666 66676652221111 0111223455565542
Q ss_pred cccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 172 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 172 ~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
...+ +.... ++++++.+.. ++++.+ .+++.+..||+|
T Consensus 82 ~~~~~v~r~~-----~~~~~~~~~~-----------~~~~~~--------------------------~~~~~~~~LS~G 119 (204)
T cd03240 82 GKKYTITRSL-----AILENVIFCH-----------QGESNW--------------------------PLLDMRGRCSGG 119 (204)
T ss_pred CCEEEEEEEh-----hHhhceeeec-----------hHHHHH--------------------------HHhcCccccCcc
Confidence 1111 22221 4455554321 111221 225678899999
Q ss_pred HHHH------HHHHHHh---------chhccCCCC------------------CCeEEEEec-hHHHhcccEEEEEeeCC
Q 019048 251 KQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 251 qrQR------v~IArAL---------DEPts~Ld~------------------g~tiIiiTH-~~~~~~aDri~v~l~~G 296 (347)
|+|| ++||||+ ||||++||. +.|+|++|| ......||+++.+-++|
T Consensus 120 ~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 9996 6788888 999999872 569999999 44556799997523444
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=169.83 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=106.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+++...+++.|++ -...+ -.=+|..||+++++||||-|||||+++|+|.++ |++|. ..++.
T Consensus 341 ~lv~y~~~~k~~g~-F~L~V------~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~-- 402 (591)
T COG1245 341 TLVEYPDLKKTYGD-FKLEV------EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLK-- 402 (591)
T ss_pred eeeecchheeecCc-eEEEe------cCCeeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----Cccce--
Confidence 34556666666653 11112 222677889999999999999999999999999 99997 23332
Q ss_pred ccccccccCCCccceeeccccc-cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~-~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
++|.+|-... +.+.|.|-+...... . .... ..-.++++-+.|+.
T Consensus 403 ------------vSyKPQyI~~~~~gtV~~~l~~~~~~---~----------~~~s---~~~~ei~~pl~l~~------- 447 (591)
T COG1245 403 ------------VSYKPQYISPDYDGTVEDLLRSAIRS---A----------FGSS---YFKTEIVKPLNLED------- 447 (591)
T ss_pred ------------EeecceeecCCCCCcHHHHHHHhhhh---h----------cccc---hhHHhhcCccchHH-------
Confidence 1344443322 222343322211100 0 0011 11234566777777
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEech--
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG-- 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH~-- 280 (347)
++++...+||||+.|||+||.|| |||++.||- ++|.++|.||
T Consensus 448 ----------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 448 ----------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred ----------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee
Confidence 67999999999999999999999 999999982 8999999995
Q ss_pred HHHhcccEEEE
Q 019048 281 DLLSLTDRARI 291 (347)
Q Consensus 281 ~~~~~aDri~v 291 (347)
.+-.++||++|
T Consensus 518 ~~dyvsDr~iv 528 (591)
T COG1245 518 MIDYVSDRLIV 528 (591)
T ss_pred hhhhhhceEEE
Confidence 55678999953
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-18 Score=167.49 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=130.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|.+++.+|+|.|+.+.+ +. +.+++++++--..++++|+||+||||++|++.+-+. |.+|.+.+.++-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~--- 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL--- 427 (582)
T ss_pred CCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc---
Confidence 467999999999987663 33 666999999999999999999999999999999888 899988776532
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
++++..|-...+.. +... ..+-.. ....+ ..++.+++.+..+||+.++
T Consensus 428 ------------ri~~f~Qhhvd~l~-------~~v~-~vd~~~---~~~pG----~~~ee~r~hl~~~Gl~g~l----- 475 (582)
T KOG0062|consen 428 ------------RIKYFAQHHVDFLD-------KNVN-AVDFME---KSFPG----KTEEEIRRHLGSFGLSGEL----- 475 (582)
T ss_pred ------------eecchhHhhhhHHH-------HHhH-HHHHHH---HhCCC----CCHHHHHHHHHhcCCCchh-----
Confidence 22344332222110 0000 000000 11111 1456778889999999864
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
.......||||||=||++|... ||||+.||. +-.|||||| +++..
T Consensus 476 -----------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 476 -----------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred -----------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 4555889999999999999987 999999983 556999999 58889
Q ss_pred cccEEEEEeeCCeEee
Q 019048 285 LTDRARIRTYLGELLG 300 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~ 300 (347)
.|+.+++ .++|++..
T Consensus 545 ~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 545 LCKELWV-VEDGKVTP 559 (582)
T ss_pred cCceeEE-EcCCcEEe
Confidence 9999986 99999876
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-18 Score=167.17 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=115.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
-|.+.+.+..|+.+ .. |.+-++++..|..++|+|+||+|||||||+|+.-.-... |++-++. |-+
T Consensus 80 Di~~~~fdLa~G~k---~L---L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f--~veqE~~--g~~----- 144 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---IL---LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGF--HVEQEVR--GDD----- 144 (582)
T ss_pred ceeeeeeeeeecch---hh---hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCcc--Cchhhee--ccc-----
Confidence 38889999999853 23 666999999999999999999999999999986111000 2222221 100
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
+. ..+.......++.+-+.......... ...+...++|.-+|+.++.
T Consensus 145 --------------t~---------~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 145 --------------TE---------ALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred --------------hH---------HHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHH-------
Confidence 00 00000000001111111111100000 1222233388999998754
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHhcc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 286 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~~a 286 (347)
..++..+||||=|-|+++|||| ||||+.||- +.|+|+||| .++-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 5778899999999999999999 999999982 789999999 4777888
Q ss_pred cEEEEEeeCCeE-eecCCcccccCC
Q 019048 287 DRARIRTYLGEL-LGIPPAKQIFDI 310 (347)
Q Consensus 287 Dri~v~l~~G~i-v~~g~~~~l~~~ 310 (347)
.-| |.+++-++ ...|+-+++...
T Consensus 263 tdI-IH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDI-IHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHH-HHHhhhhhhhhcCcHHHHHHh
Confidence 888 44665554 345666555443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-17 Score=147.80 Aligned_cols=147 Identities=10% Similarity=0.029 Sum_probs=88.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..+. ... ........+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~--~~i-~~~~~~~~i~--------- 72 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLK--DLI-KDGESSAKIT--------- 72 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHH--HHh-hCCCCeEEEE---------
Confidence 45588898888 789999999999999999985554 2211 111121110 000 0000000111
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
..+++..+.. | ......+.++.++++. .. ..++++.+||+|||
T Consensus 73 --~~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 73 --VTLKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred --EEEEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 1233322111 0 0011223456666666 32 24788999999999
Q ss_pred HHHHHHHHh-------------chhccCCCC-------------------CCeEEEEec--hHHHhcccEEEEEeeCCe
Q 019048 253 YNQIVATTF-------------NCPYLSFRD-------------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 253 QRv~IArAL-------------DEPts~Ld~-------------------g~tiIiiTH--~~~~~~aDri~v~l~~G~ 297 (347)
||++||+|+ ||||++||. +.|||++|| +.+..+ |+|.| |..++
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~~ 192 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEecC
Confidence 999999876 999999863 148999999 466665 99976 87653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-17 Score=160.70 Aligned_cols=174 Identities=11% Similarity=0.063 Sum_probs=104.2
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|.++|+-.--+.++. + ...++|+|++|-.+.|+||||||||+|+|+|.|+++ ...|...+--.
T Consensus 482 I~lenIpvItP~~~v--v---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~~------- 544 (728)
T KOG0064|consen 482 IILENIPVITPAGDV--L---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPRP------- 544 (728)
T ss_pred eEEecCceeccCcce--e---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCCC-------
Confidence 778888777665543 3 555999999999999999999999999999999998 65554433210
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
..+-|.+|.+ .+...+..++|.++...-....+.-.++....+|+.+.|+.-+ .+=.+..
T Consensus 545 --------~~mFYIPQRP-----------Yms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~d 604 (728)
T KOG0064|consen 545 --------NNIFYIPQRP-----------YMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWD 604 (728)
T ss_pred --------cceEeccCCC-----------ccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChh
Confidence 0122344433 3222233333333211000000011122344455555554311 0000000
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC-------------CCCeEEEEec-hHHHhcccE
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld-------------~g~tiIiiTH-~~~~~~aDr 288 (347)
- + ..-...||||+|||+++||.+ ||-|++.. .|.+.|-||| ..+-++-..
T Consensus 605 a------~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 A------V-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred h------h-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 0 1 122346999999999999998 99999953 2999999999 555555555
Q ss_pred E
Q 019048 289 A 289 (347)
Q Consensus 289 i 289 (347)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 5
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=142.84 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=52.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHh--------chhccCCCC-----------------CCeEEEEec-hHHHhcccEEEEEee
Q 019048 241 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 294 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tiIiiTH-~~~~~~aDri~v~l~ 294 (347)
......+|+||+|+..|++++ |||++++|. +.|+|++|| ..+..+||++.+ |+
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~-l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREG-VE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCC-eE
Confidence 445678999999999999987 999999873 789999999 577789999965 99
Q ss_pred CCeEeecC
Q 019048 295 LGELLGIP 302 (347)
Q Consensus 295 ~G~iv~~g 302 (347)
+|+++.++
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-16 Score=153.28 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|+|-+.+|+|.|++..+. +++++|-|.--.++|||||||.||||||++|.|-+. |+.|+..-+.+ +
T Consensus 584 PPvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnhr-L-- 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNHR-L-- 650 (807)
T ss_pred CCeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccce-e--
Confidence 4679999999999765444 777999999999999999999999999999999999 99998765432 1
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.+||--|...- .+ ..+.+..+... ..+.+ .+.++..|-.+||....
T Consensus 651 ------------~iG~FdQh~~E--~L~~Eetp~EyLqr-----------~FNlp----yq~ARK~LG~fGL~sHA---- 697 (807)
T KOG0066|consen 651 ------------RIGWFDQHANE--ALNGEETPVEYLQR-----------KFNLP----YQEARKQLGTFGLASHA---- 697 (807)
T ss_pred ------------eeechhhhhHH--hhccccCHHHHHHH-----------hcCCC----hHHHHHHhhhhhhhhcc----
Confidence 12332222111 11 12222222111 01122 24456678889987532
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEech
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTHG 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH~ 280 (347)
. .-.+..|||||+-||++|-.- ||||.+||- .-.||||||+
T Consensus 698 ---------H---TikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHD 760 (807)
T KOG0066|consen 698 ---------H---TIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHD 760 (807)
T ss_pred ---------c---eEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecc
Confidence 1 234668999999999999753 999999972 5679999993
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=148.52 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=107.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccC---CCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN---DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~---~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~ 169 (347)
|+|+||+|++|++++|+|+||||||||+++|+|.... ..+.|++|.|.+--..+. ...+-..
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~---------------a~iPge~ 463 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---------------ALIPGEY 463 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh---------------hccCccc
Confidence 5559999999999999999999999999999997652 224588888876432221 0111110
Q ss_pred cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCH
Q 019048 170 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (347)
Q Consensus 170 ~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSg 249 (347)
++.+-..++.+++.. ...+-..+.++|.++|+.+.. +..+..++||-
T Consensus 464 ---------Ep~f~~~tilehl~s---------~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 464 ---------EPEFGEVTILEHLRS---------KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred ---------ccccCchhHHHHHhh---------ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 001111122233221 111223466789999998755 66788999999
Q ss_pred HHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHHhc-ccEEEEEeeCCeE
Q 019048 250 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGEL 298 (347)
Q Consensus 250 GqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~-aDri~v~l~~G~i 298 (347)
||+.|+.||+++ ||-.|.||+ |.|++++|| +....+ -|++++ ..-|..
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v 587 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKV 587 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eecccc
Confidence 999999999999 888888874 999999999 445555 688865 554543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-16 Score=152.24 Aligned_cols=174 Identities=16% Similarity=0.157 Sum_probs=111.3
Q ss_pred eeEEEeCCCceeeecCCceeeEE-EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccc
Q 019048 76 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154 (347)
Q Consensus 76 nl~~~y~~~~~~~~l~~L~~isl-~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 154 (347)
++..+|+.+... --.| ..++|.+++|+|+||-||||.+|+|+|-+. |.=|+- ++.+-+
T Consensus 79 e~vHRYg~NgFk-------L~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~--~~pp~w------- 137 (591)
T COG1245 79 EVVHRYGVNGFK-------LYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRY--EDPPSW------- 137 (591)
T ss_pred cceeeccCCceE-------EecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCC--CCCCCH-------
Confidence 467788755422 2334 467899999999999999999999999999 776642 121100
Q ss_pred cccCCCccceeeccccc-------cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 155 YTIPRGSNSFSLYDTRS-------LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 155 ~~~~r~~~~~~~~~~~~-------~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
-.+-+..-|-.+|+... ..-.-.|.+...+..+...+..-+. +....-...++.+.++|..
T Consensus 138 deVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n------ 205 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN------ 205 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh------
Confidence 00000000111221110 0011255555555544333332111 1112234667888899988
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEech--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH~-- 280 (347)
++++-.++||||+.||++||.|+ |||+|-||- +++||+|.||
T Consensus 206 -----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 206 -----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred -----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 67999999999999999999999 999999871 7999999995
Q ss_pred HHHhcccEEEEEee
Q 019048 281 DLLSLTDRARIRTY 294 (347)
Q Consensus 281 ~~~~~aDri~v~l~ 294 (347)
.+-.++|-|.| ++
T Consensus 275 vLD~lsD~vhI-~Y 287 (591)
T COG1245 275 VLDYLSDFVHI-LY 287 (591)
T ss_pred HHHHhhheeEE-Ee
Confidence 34467898865 54
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-16 Score=167.73 Aligned_cols=190 Identities=12% Similarity=0.143 Sum_probs=139.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+|+|.-+++|+.+.++||.|||||||+++|+|-+.... -..|+|.+||.+.+... .++...|..|.-.-+
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e~~-------~~~~~aY~~e~DvH~ 201 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKEFV-------PKKTVAYNSEQDVHF 201 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccccc-------cCceEEecccccccc
Confidence 566999999999999999999999999999999887443 34579999998875211 133446676665556
Q ss_pred ccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHH-HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~-~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
..+ |.|-+.+.... .... .+.. ...+.+ .....+.+++.+||+. |..++|. +......|||
T Consensus 202 p~lTVreTldFa~rc--k~~~--~r~~-~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VG-----nd~~RGvSGG 264 (1391)
T KOG0065|consen 202 PELTVRETLDFAARC--KGPG--SRYD-EVSRREKLAAMTDYLLKILGLDH-------CADTLVG-----NDMVRGVSGG 264 (1391)
T ss_pred ceeEEeehhhHHHhc--cCCc--cccc-cccHHHHHHHHHHHHHHHhCchh-------hccceec-----ccccccccCc
Confidence 666 78877765431 0100 0000 111111 1124567899999985 4444444 4567789999
Q ss_pred HHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec---hHHHhcccEEEEEeeCCeEeec
Q 019048 251 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYLGELLGI 301 (347)
Q Consensus 251 qrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH---~~~~~~aDri~v~l~~G~iv~~ 301 (347)
||+||++|-++ ||+|.|||. +.|++++-| .++..+-|.|++ |++|+++..
T Consensus 265 erKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l-L~eG~~iy~ 343 (1391)
T KOG0065|consen 265 ERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL-LSEGYQIYQ 343 (1391)
T ss_pred ccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee-eeccceEEe
Confidence 99999999998 999999984 888888888 688899999976 999999999
Q ss_pred CCcccccC
Q 019048 302 PPAKQIFD 309 (347)
Q Consensus 302 g~~~~l~~ 309 (347)
|+.++++.
T Consensus 344 Gp~d~~~~ 351 (1391)
T KOG0065|consen 344 GPRDEVLP 351 (1391)
T ss_pred ccHHHHHH
Confidence 99987743
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=151.49 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=78.7
Q ss_pred HHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCC----------
Q 019048 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSF---------- 268 (347)
Q Consensus 211 ~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~L---------- 268 (347)
.+.|..+||.-- .+.++...|||||.||+-+|.-| ||||.||
T Consensus 803 LqtL~dVGLgYi----------------~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~ 866 (935)
T COG0178 803 LQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE 866 (935)
T ss_pred HHHHHHcCcceE----------------ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 456777888641 24788999999999999999999 9999996
Q ss_pred ------CCCCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 269 ------RDDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 269 ------d~g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|.|.|||+|.| -++.+.||.| +-| ..|+|++.|+|+++...+ .++|..++..
T Consensus 867 VL~rLvd~GnTViVIEHNLdVIk~AD~I-IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk~ 931 (935)
T COG0178 867 VLHRLVDKGNTVIVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLKK 931 (935)
T ss_pred HHHHHHhCCCEEEEEecccceEeecCEE-EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHHH
Confidence 35999999999 4888999999 444 568999999999999976 7888888764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=159.08 Aligned_cols=94 Identities=16% Similarity=0.027 Sum_probs=77.0
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCC--------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR-------- 269 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld-------- 269 (347)
..+.|..+||.-- -+.+....|||||.||+-||..| ||||.||.
T Consensus 1679 ~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll 1742 (1809)
T PRK00635 1679 PLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL 1742 (1809)
T ss_pred HHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 4567888999752 24888899999999999999998 99999975
Q ss_pred --------CCCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 270 --------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 270 --------~g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
.|.|||+|.| -++.+.||.|+ -| +.|+|++.|+|+++..++ .++|..++.
T Consensus 1743 ~~l~~L~~~g~tvivieH~~~~i~~aD~ii-dlgp~gG~~GG~iva~Gtp~~i~~~~-~S~t~~~l~ 1807 (1809)
T PRK00635 1743 VQLRTLVSLGHSVIYIDHDPALLKQADYLI-EMGPGSGKTGGKILFSGPPKDISASK-DSLLKTYMC 1807 (1809)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhCCEEE-EcCCCcccCCCEEEEEeCHHHHhhCC-CCcHHHHhc
Confidence 3999999999 47777799994 45 458999999999998875 356666654
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=132.67 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=43.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC-----------------C-CeEEEEec--hHHHhcc
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD-----------------D-KPVVVVTH--GDLLSLT 286 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~-----------------g-~tiIiiTH--~~~~~~a 286 (347)
.+..+.+||+|||||+.+|++| ||||++||. | .|+|++|| .....+|
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3667889999999999887552 999999873 3 47999999 3566666
Q ss_pred c--EEEEEeeCCe
Q 019048 287 D--RARIRTYLGE 297 (347)
Q Consensus 287 D--ri~v~l~~G~ 297 (347)
| ++++ |++|+
T Consensus 200 ~~~~v~~-l~~g~ 211 (213)
T cd03277 200 EKMTVLC-VYNGP 211 (213)
T ss_pred CceEEEE-EecCc
Confidence 6 6654 88876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-15 Score=143.26 Aligned_cols=194 Identities=14% Similarity=0.081 Sum_probs=123.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|.++|.+.+-.+.. . +.+-||.|-.|.+++||||||-||||||+.|+.--- -.|..=.|++.-+++...+.
T Consensus 265 IKiEnF~ISA~Gk~-L-----FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral---aIPpnIDvLlCEQEvvad~t 335 (807)
T KOG0066|consen 265 IKIENFDISAQGKL-L-----FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL---AIPPNIDVLLCEQEVVADST 335 (807)
T ss_pred ceeeeeeeecccce-e-----eeccceEEEecceecccCCCCCchHHHHHHHHhhhc---cCCCCCceEeeeeeeeecCc
Confidence 88999988875432 2 566999999999999999999999999999974221 11445566666655421000
Q ss_pred ccccccCCCccceee-ccccccccchhhhhHhhHH------HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccc
Q 019048 152 LQEYTIPRGSNSFSL-YDTRSLSDDASDNINMIKL------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~-~~~~~~~~~v~qn~~~~~~------~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~ 224 (347)
+. +.-++ .+... ..+..+...+... ++.+.+.....-++.......+.+++++|.-+|++.+.
T Consensus 336 -~A-------i~tvl~aD~kR-l~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM- 405 (807)
T KOG0066|consen 336 -SA-------IDTVLKADKKR-LALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM- 405 (807)
T ss_pred -HH-------HHHHHHhhHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH-
Confidence 00 00011 11110 0111111111110 11111111111111222334566788899999998753
Q ss_pred cccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--h
Q 019048 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 280 (347)
Q Consensus 225 ~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~ 280 (347)
-+++...+|||-|.||++|||| ||||..||- .+|+++||| .
T Consensus 406 ---------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 406 ---------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQG 470 (807)
T ss_pred ---------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccc
Confidence 5778889999999999999999 999999872 799999999 4
Q ss_pred HHHhcccEEEEEeeCCeEee
Q 019048 281 DLLSLTDRARIRTYLGELLG 300 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~ 300 (347)
++-..|.-|+ .+++-++-.
T Consensus 471 FLD~VCtdII-HLD~qkLhy 489 (807)
T KOG0066|consen 471 FLDSVCTDII-HLDNQKLHY 489 (807)
T ss_pred hHHHHHHHHh-hhhhhhhhh
Confidence 7888898884 688776643
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=130.97 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 245 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 245 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
..|||||+||+++|+++ ||||++||. +.|+|++|| ..+..+||++++ |.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~-l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL-VEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE-EEE
Confidence 34999999999999742 999999873 789999999 456789999975 776
Q ss_pred Ce
Q 019048 296 GE 297 (347)
Q Consensus 296 G~ 297 (347)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 54
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-13 Score=121.42 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHh-------------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 247 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 247 LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
||+||+||++|||++ |||+++||. |.|+|++|| ......+|+++. ++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EEE
Confidence 999999999999975 999999873 689999999 455678999975 543
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-13 Score=122.73 Aligned_cols=62 Identities=8% Similarity=-0.092 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHh--------chhccCCCC-----------------CCeEEEEec-hHHHhcccEEEEEeeCCeE
Q 019048 245 GDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 245 ~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~i 298 (347)
+.++.+++|...++..+ |||++++|+ +.++|++|| ..+...++++.. +..+++
T Consensus 90 s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~-l~~~~~ 168 (202)
T cd03243 90 STFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPG-VKNLHM 168 (202)
T ss_pred eeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCC-eEEEEE
Confidence 34566666655555443 888888663 789999999 566777888754 888898
Q ss_pred eecCCcccc
Q 019048 299 LGIPPAKQI 307 (347)
Q Consensus 299 v~~g~~~~l 307 (347)
...+...++
T Consensus 169 ~~~~~~~~~ 177 (202)
T cd03243 169 EELITTGGL 177 (202)
T ss_pred EEEecCCee
Confidence 888765433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-13 Score=126.57 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHHHHHHh-----------chh---ccCCCC---------------CCeEEEEec-hHHHhcccEEEEEe
Q 019048 244 EGDSDVEKQYNQIVATTF-----------NCP---YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT 293 (347)
Q Consensus 244 ~~~LSgGqrQRv~IArAL-----------DEP---ts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l 293 (347)
...+|.|++|+..+|+++ ||| |++||. +.++|++|| ..+..+||++.. +
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~-i 165 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPN-V 165 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCC-e
Confidence 457899999988888888 999 777652 789999999 678889999964 9
Q ss_pred eCCeEeecCC
Q 019048 294 YLGELLGIPP 303 (347)
Q Consensus 294 ~~G~iv~~g~ 303 (347)
++|++...+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999876654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=114.34 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHh-------------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 246 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
+||+||+||+++|++| |||++++|. +.++|++|| ......+|+++. |+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~-l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIH-IKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEE-EEE
Confidence 4999999999999988 999999873 579999999 455667999964 654
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=123.23 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=93.4
Q ss_pred ceeeEEEecCC-----eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECCEeCCCCccccccccCCCccceee
Q 019048 93 MTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (347)
Q Consensus 93 L~~isl~i~~G-----e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~r~~~~~~~ 166 (347)
+-+..|.|..| |++..+|+||.|||||+++++|.++ |++| +|-.-. ++|-+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~ln------------------VSykp 408 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLN------------------VSYKP 408 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccc------------------eeccc
Confidence 34488888887 4688999999999999999999999 8876 232211 12333
Q ss_pred cccccc-ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCC
Q 019048 167 YDTRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (347)
Q Consensus 167 ~~~~~~-~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~ 245 (347)
|..... .+.|.|-+.- .+.+. -.....+.+.++-+.+++ .+++-..
T Consensus 409 qkispK~~~tvR~ll~~---kIr~a-------------y~~pqF~~dvmkpL~ie~-----------------i~dqevq 455 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHT---KIRDA-------------YMHPQFVNDVMKPLQIEN-----------------IIDQEVQ 455 (592)
T ss_pred cccCccccchHHHHHHH---HhHhh-------------hcCHHHHHhhhhhhhHHH-----------------HHhHHhh
Confidence 332221 1112221111 11000 011123344455555555 4577788
Q ss_pred CCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEechH--HHhcccEEEE
Q 019048 246 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGD--LLSLTDRARI 291 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH~~--~~~~aDri~v 291 (347)
+||||++||+++|..| |||.+-||. ++|-.+|.|++ +-.+|||+++
T Consensus 456 ~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 456 GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 9999999999999999 999999873 88999999964 4467999953
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=113.86 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 45578888887 788999999999999999976654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-12 Score=113.82 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++|+. |++++|+||||||||||+|+|++...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 44466665 79999999999999999999998663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-12 Score=135.98 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++. +|+.+||... .+++.+.+|||||+||++||+|| ||||++||+
T Consensus 466 i~~rl~-~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~ 528 (943)
T PRK00349 466 IRERLK-FLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDND 528 (943)
T ss_pred HHHHHH-HhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHH
Confidence 344443 6888888751 14889999999999999999998 999999874
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~ 311 (347)
|.|||+|+| ......||++++ | ++|+++..|++++++..+
T Consensus 529 ~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~-LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 529 RLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD-IGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE-eccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 233456999975 9 999999999999886653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-12 Score=103.36 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=39.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|++++|++++|++++|+||||||||||++++. +|.+.++|.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~ 48 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV 48 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH
Confidence 55699999999999999999999999999975 488999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-12 Score=134.88 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=62.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEE
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
+++.+.+|||||+||+.||++| ||||++||. |.|||+|+| ......||++++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 4889999999999999999998 999999873 899999999 344458999975
Q ss_pred Ee------eCCeEeecCCcccccCCC
Q 019048 292 RT------YLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 292 ~l------~~G~iv~~g~~~~l~~~~ 311 (347)
| ++|+|++.|++++++..+
T Consensus 561 -LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 561 -IGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred -ecccccCCCCEEeeccCHHHHhcCc
Confidence 9 999999999998886543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=116.16 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=36.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999999874
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=110.89 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.1
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|++|++++|++++|+||||||||||+++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-10 Score=103.56 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=30.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|++.+ ++++|+||||||||||+|+|+++.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 5569999987 899999999999999999998755
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=97.58 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEE
Q 019048 246 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
.||||||-+++||-.| ||+.++||+ ...+|++|| ......||+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIG 210 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999776 999999984 588999999 678888898754
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-10 Score=104.27 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=35.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHh--------chhccCCCC------------------CCeEEEEec-hHHHhcccE
Q 019048 241 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~------------------g~tiIiiTH-~~~~~~aDr 288 (347)
.+..+.+|+|++|...+++.. |||++++|. +.++|++|| .++.+++++
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 445667888888877776663 888888652 678999999 566667764
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-10 Score=113.72 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g~~i~ 147 (347)
|++|||+|++||+++|+|||||||||||+ +|+.. |++| +|.++|.++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 45599999999999999999999999999 67777 7788 7999999986
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=98.19 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
=+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34789999999999999999999999999887
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-10 Score=120.29 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=29.9
Q ss_pred eEEEecCC-eEEEEECCCCChHHHHHHHHhhc-cc
Q 019048 96 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV-FE 128 (347)
Q Consensus 96 isl~i~~G-e~~aIvGpnGsGKSTLlk~L~gl-~~ 128 (347)
+|+++..+ ++++|+||||+|||||+|+|++. +.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~ 348 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM 348 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH
Confidence 68888877 89999999999999999999998 44
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=106.60 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++ |.+.+|++++|+|+||+|||||+++|+++.+ ++.|.|.+.|+.
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Ger 195 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGER 195 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecC
Confidence 5559 9999999999999999999999999999999 999999986654
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.6e-09 Score=102.94 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=52.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.++-+.++..|..+ +.++ +.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG--iraI---D~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG--IKSI---DSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC--CEEE---ecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 46777788777644 3454 434 9999999999999999999999999999998 889988877754
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-09 Score=104.15 Aligned_cols=155 Identities=16% Similarity=0.102 Sum_probs=94.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE--CCEeCCCCccccccccCCCccceeeccccc------
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS------ 171 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~--~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~------ 171 (347)
-.+|+++++||.||-||||-+++++|-++ |.-|.-.. +++++- + .. | |--+|....
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il-~-~f------r---gselq~yftk~le~~ 160 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEIL-T-YF------R---GSELQNYFTKILEDN 160 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHh-h-hh------h---hHHHhhhhhhhcccc
Confidence 35799999999999999999999999999 76663211 011110 0 00 0 111111100
Q ss_pred cccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 172 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 172 ~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
+-.. -+|.+...+..+...+..-+. +...++...++...+.|+. ++++-..+||||
T Consensus 161 lk~~~kpQyvd~ipr~~k~~v~~~l~------~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsgg 217 (592)
T KOG0063|consen 161 LKAIIKPQYVDQIPRAVKGTVGSLLD------RKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGG 217 (592)
T ss_pred ccCcCChHHHHHHHHHHHHHHHHHHH------HHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccc
Confidence 0011 255555554433333221111 1122223445666677766 557888999999
Q ss_pred HHHHHHHHHHh---------chhccCCC----------------CCCeEEEEech--HHHhcccEEEEEee
Q 019048 251 KQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTHG--DLLSLTDRARIRTY 294 (347)
Q Consensus 251 qrQRv~IArAL---------DEPts~Ld----------------~g~tiIiiTH~--~~~~~aDri~v~l~ 294 (347)
+.||.+||.+- |||.+.|| +..-||+|.|+ .+-.++|-+.+ ++
T Consensus 218 elqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc-LY 287 (592)
T KOG0063|consen 218 ELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC-LY 287 (592)
T ss_pred hhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE-Ee
Confidence 99999999997 99999976 16679999993 45566787754 54
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.9e-08 Score=94.41 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++++.+| +.+|+||||||||||+.+|..+..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 56689999988 889999999999999999987654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-08 Score=103.31 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=69.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEE
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
+++....|||||.||+-||.-| |||+.||-+ |.|+|+|.| .++.+.||++ |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 4888999999999999999998 999999742 999999999 6899999999 4
Q ss_pred E------eeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 292 R------TYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 292 ~------l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
- .+.|+|++.|++++++.+++ +-|..++..
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~-SlTG~YLsg 589 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPE-SLTGQYLSG 589 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCc-chhhHhhcC
Confidence 4 46799999999999999875 455666654
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-08 Score=100.28 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
.+.++.++++..|..+ +.+++ .++ .|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~TG--i~aID---~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liG 200 (450)
T PRK06002 137 PPAMTRARVETGLRTG--VRVID---IFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVG 200 (450)
T ss_pred CCCeEeecceEEcCCC--cEEee---eec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecc
Confidence 3569999999999755 45544 475 999999999999999999999999999998 9999988865
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=106.92 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=43.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHh--------chhccCCCC-----------------CCeEEEEec--hHHHhcccEEEEEe
Q 019048 241 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRT 293 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tiIiiTH--~~~~~~aDri~v~l 293 (347)
.+..+.+|+||+|++.|++++ |||++|+|+ |.++|++|| +.+...+++.. +
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~--v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG--V 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC--e
Confidence 456678999999999999996 999999763 889999999 34444555553 3
Q ss_pred eCCeEee
Q 019048 294 YLGELLG 300 (347)
Q Consensus 294 ~~G~iv~ 300 (347)
.++.+..
T Consensus 463 ~~~~~~~ 469 (782)
T PRK00409 463 ENASVEF 469 (782)
T ss_pred EEEEEEE
Confidence 3445444
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=86.32 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=23.8
Q ss_pred EEEecCC--eEEEEECCCCChHHHHHHHHhh
Q 019048 97 DYDVPKT--TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 97 sl~i~~G--e~~aIvGpnGsGKSTLlk~L~g 125 (347)
++.+.++ .+++|+||||+|||||+|.|..
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3444444 7899999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=85.03 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=38.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh-cccCCCCCCCCcEEEEC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYN 142 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g-l~~~~~~~p~~G~I~~~ 142 (347)
.++++|++.+|++++|+||||+|||||+++|++ .+. +..|.....
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~a 66 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVPA 66 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEEc
Confidence 666999999999999999999999999999999 555 677765543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=93.73 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhhhhc---cCCCcEEEeeeEEEeCCCceeeecCCce-----------eeEEEecCCeEEEEECCCCChH
Q 019048 51 DAVFREVLQSYDQLRT---RIGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKGSGK 116 (347)
Q Consensus 51 ~~~~~~~~~~~~~~~~---~~~~~l~i~nl~~~y~~~~~~~~l~~L~-----------~isl~i~~Ge~~aIvGpnGsGK 116 (347)
..|+.+++...+.... ....-++|+||++.|+....+ |+ |+++.|.+|++++|+||+||||
T Consensus 107 ~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~-----Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GK 181 (415)
T TIGR00767 107 GERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERLR-----LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGK 181 (415)
T ss_pred HhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccce-----eecCccccceeeeeeEEEeCCCCEEEEECCCCCCh
Confidence 4477777666543221 122359999999999765433 54 6999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 019048 117 SSLVNRISKVFE 128 (347)
Q Consensus 117 STLlk~L~gl~~ 128 (347)
|||++.|...+.
T Consensus 182 TtL~~~i~~~I~ 193 (415)
T TIGR00767 182 TVLLQKIAQAIT 193 (415)
T ss_pred hHHHHHHHHhhc
Confidence 999999999876
|
Members of this family differ in the specificity of RNA binding. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-08 Score=87.35 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.5
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+.+.+++|+.++|+||||||||||+++|+++++ ++.|.|.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 667899999999999999999999999999999 89999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-08 Score=85.67 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCeEEEEec-hHHHhcccEEEEEeeCCeEeec
Q 019048 270 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 301 (347)
Q Consensus 270 ~g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~ 301 (347)
.+.++|+++| ..+..++|+|. .+.+|++++.
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 3678999999 66778899996 4999999776
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-07 Score=93.67 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=75.5
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC---EeCCCCccccccccC--CCc
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS---SVGDGTYFLQEYTIP--RGS 161 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g---~~i~~~~~~~~~~~~--r~~ 161 (347)
+.++++ + |.+.+|++++|+|+||||||||+++|+++.+. .+.|.|.+.| +++.. +. ...+. ...
T Consensus 152 i~aID~---~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~--~~-~~~l~~~g~~ 220 (442)
T PRK06315 152 VRCIDG---M-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVRE--FI-EGDLGEEGMK 220 (442)
T ss_pred EEEEec---c-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHH--HH-HHHHHhcCCc
Confidence 566555 7 99999999999999999999999999998851 3446677644 44320 00 00010 011
Q ss_pred cceeeccccccccchhhhhHhhHH--HHHhhhhhhhhhccCC--ChHHHHHHHHHHHHHCCCC-cccccccceeeeeech
Q 019048 162 NSFSLYDTRSLSDDASDNINMIKL--WIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCE-PSVIRKVNFVIFVVDG 236 (347)
Q Consensus 162 ~~~~~~~~~~~~~~v~qn~~~~~~--~v~~~v~~~~~~~~~~--~~~~~~~~i~~~l~~~gl~-~~~~~~~~~~~~vvd~ 236 (347)
.++++. ...+|++..-.+ .+...++..+..+... ...+...++.++++.+++. .+.
T Consensus 221 ~svvvv------ats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gep------------- 281 (442)
T PRK06315 221 RSVIVV------STSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEP------------- 281 (442)
T ss_pred eEEEEE------eCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCC-------------
Confidence 122211 001444432211 2344444444433211 1245667888999999994 100
Q ss_pred hhhhccCCCCCC
Q 019048 237 LAVLKSMEGDSD 248 (347)
Q Consensus 237 ~~~~~~~~~~LS 248 (347)
.+....+|+.||
T Consensus 282 p~~~gypP~~fS 293 (442)
T PRK06315 282 PARAGYTPSVFS 293 (442)
T ss_pred ccccCCCCchhh
Confidence 114588999988
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=77.77 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=28.0
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++++++|+. .|+++.- ++.|+|+||||||||+..|+-..
T Consensus 23 lPa~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 23 LPAFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred chHHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhc
Confidence 345444442 4555544 88999999999999999997443
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-07 Score=94.89 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=49.4
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh-------------------chhc-cCCCC--------------CCeEEEE
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD--------------DKPVVVV 277 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPt-s~Ld~--------------g~tiIii 277 (347)
.++...+.....+..|||||+||++||+|| |||| ++||. +.|||+|
T Consensus 454 ~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiii 533 (562)
T PHA02562 454 ETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVI 533 (562)
T ss_pred hHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEE
Confidence 444444444556789999999999999652 9998 67763 7899999
Q ss_pred ec-hHHHhcccEEEEEeeC-CeE
Q 019048 278 TH-GDLLSLTDRARIRTYL-GEL 298 (347)
Q Consensus 278 TH-~~~~~~aDri~v~l~~-G~i 298 (347)
|| ......+|++++ |.+ |..
T Consensus 534 sh~~~~~~~~d~~~~-l~~~~~~ 555 (562)
T PHA02562 534 SHKDHDPQKFDRHLK-MEKVGRF 555 (562)
T ss_pred ECchhchhhhhcEEE-EEEECCe
Confidence 99 556677999965 665 543
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.5e-07 Score=100.73 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=53.6
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh-------------------chhccCCCC----------------CCeEEE
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~tiIi 276 (347)
+|+|..+...+.+..|||||++|++||+|| ||||++||+ |++|+|
T Consensus 936 ~~~~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~i 1015 (1042)
T TIGR00618 936 LVADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGI 1015 (1042)
T ss_pred EEEeCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445555566788999999999999999886 999999984 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCC
Q 019048 277 VTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G 296 (347)
||| .....++|+|.| ++.+
T Consensus 1016 isH~~~~~~~~~~~i~v-~~~~ 1036 (1042)
T TIGR00618 1016 ISHVPEFRERIPHRILV-KKTN 1036 (1042)
T ss_pred EeCcHHHHHhhCCEEEE-EECC
Confidence 999 578899999975 7654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=79.45 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHH-HHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLV-NRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLl-k~L~gl~~ 128 (347)
.++|+|++|||||||+ +.+.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 68888765
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-07 Score=93.77 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 245 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 245 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
..|||||+||++||+++ |||+++||. +.|||+||| .....+||++++ |++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~-l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFK-VEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEE-EEE
Confidence 57999999999999886 999999873 899999999 455568999975 888
Q ss_pred Ce
Q 019048 296 GE 297 (347)
Q Consensus 296 G~ 297 (347)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-07 Score=91.30 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=34.7
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++ + |+|.+|++++|+|+||||||||+++|+|+.+
T Consensus 143 i~aID~---l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAING---L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccc---e-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 456554 9 9999999999999999999999999999988
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=78.36 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=29.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHh------------chhccCCCC----------------CCeEEEEec
Q 019048 241 KSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g~tiIiiTH 279 (347)
.-....+|.|++|.+.++.+| |||-++|.+ +..+|++||
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred EEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 445667899999998888776 999999753 578999999
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-06 Score=84.18 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=40.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 4448 9999999999999999999999999999988 888877665543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.6e-07 Score=66.34 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.2
Q ss_pred ceeeEEEecC-CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~-Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.++++.+ |.+++|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3446778875 56999999999999999999988776
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=78.44 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=32.7
Q ss_pred EecCCeEEEEECCCCChHHHH-HHHHhhcccCCCCCCCCcEEEECC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTL-lk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
-+++|++++|+|++||||||| +++++++.+ +....+++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeC
Confidence 478999999999999999999 699999877 4445566553
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-07 Score=78.42 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+|++++|+|+||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999987 5 578886653
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-06 Score=74.42 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=39.2
Q ss_pred hccCCCCCCHHHHH-----HHHHHHHh----------chhccCCC---C----------------CCeEEEEec--hH--
Q 019048 240 LKSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR---D----------------DKPVVVVTH--GD-- 281 (347)
Q Consensus 240 ~~~~~~~LSgGqrQ-----Rv~IArAL----------DEPts~Ld---~----------------g~tiIiiTH--~~-- 281 (347)
.+..+..+|+|++| +..+.+++ |||++.++ . |.|+|+++| ..
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 36677889999988 34444332 99998865 1 899999999 22
Q ss_pred -------HHhcccEEEEEee
Q 019048 282 -------LLSLTDRARIRTY 294 (347)
Q Consensus 282 -------~~~~aDri~v~l~ 294 (347)
+..+||.++. |+
T Consensus 145 ~~~~~~~~~~~aD~ii~-l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIR-LR 163 (187)
T ss_pred cccCcCceeEeeeEEEE-EE
Confidence 5788999964 65
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.23 E-value=7e-06 Score=69.67 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=29.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+++|.||+|+|||||++.+++... +..+.+.+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEEC
Confidence 378999999999999999999987 66677766543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-06 Score=88.09 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=54.2
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
+.++.++++..|..+ +.+ ++++ |+|.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|+.
T Consensus 128 ~~~~r~~v~~~l~tG--i~a---ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRA---IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--cee---eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 357788888888544 456 4559 9999999999999999999999999999998 888888776653
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=8e-06 Score=75.14 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-+|++|++++|++++|.||||+|||||++.++...
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 56699999999999999999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-06 Score=79.17 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.3
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-06 Score=79.95 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||+++|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=76.90 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|++++|+||||||||||+++|++.+. + .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEECC
Confidence 78999999999999999999999876 4 5777776654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=83.62 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=37.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++|++++|+|||||||||++..|++.+. +..++|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCcc
Confidence 5789999999999999999999999998 77789998887753
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=89.36 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEeeCC
Q 019048 246 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G 296 (347)
.|||||+||++||+++ |||+++||. +.+||+||| ..++.+||+.++ +.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~-v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFF-VSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE-Eecc
Confidence 5899999999999997 999999873 789999999 566689999965 7765
Q ss_pred e
Q 019048 297 E 297 (347)
Q Consensus 297 ~ 297 (347)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-06 Score=86.83 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=43.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC---cEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~---G~I~~~g~~i~ 147 (347)
++++ |++.+|++++|+|+||||||||+++|++... ++. |.|..+|+++.
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 5559 9999999999999999999999999999887 665 88888888764
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-06 Score=82.67 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=42.4
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+++ ++.+ |.+.+|++++|+|+||+|||||+++|++... ++.|.+..-|+
T Consensus 57 i~a---iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGe 105 (326)
T cd01136 57 VRA---IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGE 105 (326)
T ss_pred cEE---Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEec
Confidence 456 4448 9999999999999999999999999999998 88887776554
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-06 Score=88.09 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=53.7
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+.|++..|+.. .+ ++++++.+..|+.++|+||||||||||+++|.|+++ |.+|++.+....+
T Consensus 187 ~~d~~~v~Gq~---~~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQE---QG---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcH---HH---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchh
Confidence 45888888652 34 455999999999999999999999999999999999 9999999887665
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-06 Score=82.75 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++-+.++..|..+ +.+++. + |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+...|+.
T Consensus 112 ~~R~~~~~~~~tG--i~~id~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVG--VRAING---L-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeee--EEeecc---e-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 4445566666433 556544 8 9999999999999999999999999999998 887776655543
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-06 Score=78.25 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=29.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I 139 (347)
+..+++|.||||||||||+++|+++++ +..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 457999999999999999999999999 888873
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-06 Score=95.00 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=52.0
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH 279 (347)
.++.+.++..+..+.++..|||||+||++||+++ ||||++||. +.++|||||
T Consensus 1071 ~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh 1150 (1179)
T TIGR02168 1071 AGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITH 1150 (1179)
T ss_pred cCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEc
Confidence 3455556666667789999999999999999984 999999884 678999999
Q ss_pred -hHHHhcccEEEE
Q 019048 280 -GDLLSLTDRARI 291 (347)
Q Consensus 280 -~~~~~~aDri~v 291 (347)
.....+||+++.
T Consensus 1151 ~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1151 NKGTMEVADQLYG 1163 (1179)
T ss_pred ChhHHHHhhhHee
Confidence 455678999964
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.8e-06 Score=91.98 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=50.3
Q ss_pred eeechhhh-hccCCCCCCHHHHHHHHHHHHh-----------------chhccCCCC----------------CCeEEEE
Q 019048 232 FVVDGLAV-LKSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 232 ~vvd~~~~-~~~~~~~LSgGqrQRv~IArAL-----------------DEPts~Ld~----------------g~tiIii 277 (347)
.|+|..+. ..+++..|||||+++++||+|| ||||++||. |+||+||
T Consensus 934 ~~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~ii 1013 (1047)
T PRK10246 934 EVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVI 1013 (1047)
T ss_pred eeeehhccCCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45665432 3578999999999999999996 999999984 8999999
Q ss_pred ec--hHHHhcccEEEEEeeC
Q 019048 278 TH--GDLLSLTDRARIRTYL 295 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~ 295 (347)
|| ....++..+|.| -+.
T Consensus 1014 sH~~~l~~~i~~qi~V-~k~ 1032 (1047)
T PRK10246 1014 SHVEAMKERIPVQIKV-KKI 1032 (1047)
T ss_pred ecHHHHHHhccceEEE-EEC
Confidence 99 466678888865 443
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-06 Score=84.58 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=41.4
Q ss_pred ceeeEEEe---cCCeE-----EEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i---~~Ge~-----~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++++++.+ ++|+. +||+|++|||||||++.|.+++.... ...|.|.+||..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 44588877 56776 99999999999999999999998211 13588899986653
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.4e-06 Score=83.75 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=42.5
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+|++.+|++++|+|+||+|||||+++|++..+ |+.|.|.+.|+..
T Consensus 133 ~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 133 TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 699999999999999999999999999999998 8999988888653
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-06 Score=82.17 Aligned_cols=43 Identities=14% Similarity=0.367 Sum_probs=38.1
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+++.++.|+.++|+||+|||||||+++|+++++ +..|.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEcC
Confidence 446788999999999999999999999999998 8888888753
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.1e-06 Score=83.19 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer 200 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGER 200 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccC
Confidence 4459 9999999999999999999999999999998 888988888754
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-06 Score=88.47 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=30.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHH--hhcccCCCCCCCCcEEEECC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L--~gl~~~~~~~p~~G~I~~~g 143 (347)
=+++|..+.|.|++|||||||...+ .|+.+ ..+.-+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEE
Confidence 5889999999999999999999876 45554 3345555543
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-06 Score=82.51 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=43.3
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 5558 9999999999999999999999999999998 8889888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.4e-06 Score=83.42 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=42.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|..
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~ 182 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGER 182 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccC
Confidence 5559 9999999999999999999999999999998 888888775543
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=83.69 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=26.0
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+||.+.....+.|+|++|||||||++.|+..+.
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~ 481 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 444444434799999999999999999988765
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.5e-06 Score=80.36 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999885
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=85.66 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCCccccc-ccceeeeeechhhhhccCCCCCCHHHHHHHHHH------HHh---------chhccCCCC
Q 019048 207 RNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD 270 (347)
Q Consensus 207 ~~~i~~~l~~~gl~~~~~~-~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~ 270 (347)
...+.+++..+++...-+. ..+.-+.|... .....+..|||||++|++|| +++ ||||++||+
T Consensus 763 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~ 840 (895)
T PRK01156 763 TSLTRKYLFEFNLDFDDIDVDQDFNITVSRG--GMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDE 840 (895)
T ss_pred HHHHHHHHHHhCCCccceeecCCeeEEEEeC--CccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCH
Confidence 3345567777777521100 11111222221 23557889999999999765 666 999999874
Q ss_pred ------------------C-CeEEEEec-hHHHhcccEEEEEee
Q 019048 271 ------------------D-KPVVVVTH-GDLLSLTDRARIRTY 294 (347)
Q Consensus 271 ------------------g-~tiIiiTH-~~~~~~aDri~v~l~ 294 (347)
+ .|+|+||| ......||+++. +.
T Consensus 841 ~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~-~~ 883 (895)
T PRK01156 841 DRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYE-VK 883 (895)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEE-EE
Confidence 2 38999999 455678999975 54
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.9e-06 Score=72.00 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999876
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.1e-06 Score=89.02 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=43.1
Q ss_pred ccCCCCCCHHHHHHHHHH------HHh---------chhccCCCC----------------CCeEEEEec-hHHHhcccE
Q 019048 241 KSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDr 288 (347)
..++..|||||+|+++|| +++ ||||++||. +.|||+||| ..+...||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 567889999999966555 454 999999874 578999999 566788999
Q ss_pred EEEEeeC
Q 019048 289 ARIRTYL 295 (347)
Q Consensus 289 i~v~l~~ 295 (347)
+++ |..
T Consensus 863 ~~~-l~~ 868 (880)
T PRK03918 863 VIR-VSL 868 (880)
T ss_pred EEE-EEe
Confidence 965 763
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.1e-06 Score=90.67 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=52.0
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
++.+.|..+......+..||||||++++||++| |||+++||. +.++|+|||
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 455566555555678899999999999999988 999999884 678999999
Q ss_pred hHHHhcccEEEE
Q 019048 280 GDLLSLTDRARI 291 (347)
Q Consensus 280 ~~~~~~aDri~v 291 (347)
..+..+||+++.
T Consensus 1137 ~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1137 SPMIEYADRAIG 1148 (1164)
T ss_pred HHHHHhcceeEe
Confidence 566789999975
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.5e-06 Score=82.50 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=41.6
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC---cEEEECCEeCC
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 147 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~---G~I~~~g~~i~ 147 (347)
|++.+|++++|+|+||+|||||+++|+++.+ ++. |.|.+.|+++.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 9999999999999999999999999999988 765 89999998874
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=67.26 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|++|+|||||++.|.+-
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35899999999999999999983
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=80.41 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=42.2
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+++++. + |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|.
T Consensus 145 Ir~ID~---l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGe 193 (434)
T PRK05922 145 IKAIDA---F-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGE 193 (434)
T ss_pred ceeecc---e-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCC
Confidence 456554 5 9999999999999999999999999999988 88888866554
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.4e-06 Score=71.73 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
|+++++..+++.+ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5558999888755 9999999999999999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.8e-06 Score=75.23 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++||.|+||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999997
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=1e-05 Score=79.72 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=41.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++.+.-.+++|++++|+|+||+|||||+++|+|... +..|.|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 344555788999999999999999999999999999 999999998643
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.9e-06 Score=77.92 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=31.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.++||.|+||||||||+++|.+++.. .|.+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~---~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSR---WPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh---cCCCCceEEEecc
Confidence 58999999999999999999999862 1457787765544
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=71.62 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=35.3
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~~g~~i 146 (347)
++|.+++|+|+||||||||++.|.+.+. + ..|.+.++|.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeH
Confidence 6789999999999999999999999775 3 346899998665
|
|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=71.18 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++++.+| +++|+||||+||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56688888887 999999999999999999987775
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.2e-05 Score=81.27 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=34.5
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.++++ + |.|.+|++++|+|+||+|||||+++|+++..
T Consensus 156 i~aID~---l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSING---L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecc---e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566555 8 9999999999999999999999999999877
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1e-05 Score=71.19 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999775
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.6e-06 Score=79.38 Aligned_cols=52 Identities=27% Similarity=0.270 Sum_probs=44.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCe-------EEEEECCCCChHHHHHHHHhhc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge-------~~aIvGpnGsGKSTLlk~L~gl 126 (347)
..+++++++++|+... .+ ++.++|+++.|+ .++|+|.+|+|||||++.|.|-
T Consensus 17 g~~~~~~~~~~~~~~~--~~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 17 GDTEALAAAVREDAST--GS---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred CccccccccccCCCCc--cc---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 4588999999998443 34 555999999999 9999999999999999999874
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=63.76 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||+|.|+|--
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 48999999999999999999854
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=80.21 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=42.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|+..
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGerg 195 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERG 195 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccc
Confidence 4458 9999999999999999999999999999887 7788888777654
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=68.26 Aligned_cols=33 Identities=12% Similarity=0.389 Sum_probs=25.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
-.++|+|++|||||||++.|.+..... ..|+.|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g 47 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITPTQG 47 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC
Confidence 468999999999999999999963210 116666
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.2e-05 Score=89.30 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=42.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
+.+..|++.+| +++|+|+|||||||++++|++++. |..|.+.|++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578899887 999999999999999999999998 888999998764
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=75.71 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=28.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+++|+|+||||||||+++|+++++ +..|.+...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~~D 34 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVICLD 34 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEECc
Confidence 489999999999999999999998 7767655543
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.8e-06 Score=82.59 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.6
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcE
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~ 138 (347)
++.++.+++|.+++|||||||||||++..|++.+. ...|.
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 34777888999999999999999999999999886 56553
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.2e-05 Score=85.32 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=37.5
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
++++..++.+++|+|++|+|||||++++.+-+.. ...|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeecc
Confidence 5678889999999999999999999999665541 56899998763
|
syringae 6; Provisional |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.3e-05 Score=71.83 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+||||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999984
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.80 E-value=3e-05 Score=88.22 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=42.1
Q ss_pred EEEeeeEEEeCC--CceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHh----hcccCCCCCCC-CcEEEECCE
Q 019048 72 TDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASE-RAQVTYNSS 144 (347)
Q Consensus 72 l~i~nl~~~y~~--~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~----gl~~~~~~~p~-~G~I~~~g~ 144 (347)
|.++|+- +|+. +.. .-|.|. +| +++|+|||||||||++.+|. |..+ |. .|.+++.+.
T Consensus 6 l~i~g~r-Sf~~~~~~~-------~~I~F~--~~-~~~I~G~NGaGKTTil~ai~~al~G~~~-----~~~~g~~~i~~~ 69 (1311)
T TIGR00606 6 MSILGVR-SFGIEDKDK-------QIIDFF--SP-LTILVGPNGAGKTTIIECLKYICTGDFP-----PGTKGNTFVHDP 69 (1311)
T ss_pred eeeecee-cCCCccccc-------eeeecc--cc-eEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCceEecCC
Confidence 6677764 6753 111 114553 44 99999999999999999994 8887 74 688888765
Q ss_pred eC
Q 019048 145 VG 146 (347)
Q Consensus 145 ~i 146 (347)
++
T Consensus 70 ~~ 71 (1311)
T TIGR00606 70 KV 71 (1311)
T ss_pred Cc
Confidence 44
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.2e-05 Score=79.00 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=33.7
Q ss_pred eeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 87 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 87 ~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+++. + |.+.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINA---M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecc---e-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 455444 6 9999999999999999999999999999876
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.7e-06 Score=76.44 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=41.0
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.+++..|.+..+.....+..|.+++| +++|+.+.|+||+|+|||+|+.+|+....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346667777643322222333555899 99999999999999999999999976654
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.4e-05 Score=70.85 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+++|.|+||||||||++.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 7e-11
Identities = 56/381 (14%), Positives = 119/381 (31%), Gaps = 78/381 (20%)
Query: 3 GEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYD 62
E+ +F EE++ F + + + ++QR R ++ + Q +
Sbjct: 75 QEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDN-QVFA 127
Query: 63 QL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 121
+ +R+ + +L P + + G+ GSGK+ +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV-LIDGV------------------LGSGKTWVAL 168
Query: 122 RISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DDASDN 179
V + K + ++ + + E + D S D S N
Sbjct: 169 ---DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 180 INMIKLWIMEGVRHGELVIRRSDSSSL------RNRMRCKAHKIGCEPSVIRKVNFVIFV 233
I + I +R L+ + + L +N A + C+ + + V
Sbjct: 223 IKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 234 VDGLAVLK-SMEGDSDV--EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL------S 284
+ S++ S + ++ +C D P V+T S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAES 336
Query: 285 LTDR-ARIRTY-------LGELLG-----IPPA--KQIFD----IPESSD-PENELIIV- 323
+ D A + L ++ + PA +++FD P S+ P L ++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 324 -DMLRYCLEHADRNLSCKSCA 343
D+++ + L S
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 128/374 (34%)
Query: 38 RDSWDSLVDQRRRDAVFREVLQSYD-QLR----TRIGSLTDAKNKILSYTPGAWIENVGG 92
+ ++ + +++ + TR +TD + + T + +
Sbjct: 251 LNVQNA------------KAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMT 297
Query: 93 MT-------LSDY------DVP---KTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFAS 134
+T L Y D+P TT+ + + K DK +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 135 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNIN-----MIKLW 186
SS+ N + R + D S + + + +W
Sbjct: 358 -----IIESSL----------------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 187 ----------IMEGVRHGELVIRRSDSS-----SLRNRMRCKAHKIGCEPSVIRKVNFVI 231
++ + LV ++ S S+ ++ K E ++ R +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSI---- 449
Query: 232 FVVDGLAVLKSMEGDS---DVEKQY--NQIV-----------ATTFNCPYLSF------- 268
VD + K+ + D QY + I T F +L F
Sbjct: 450 --VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 269 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRY 328
R D + L +L ++ Y I D +DP+ E ++ +L +
Sbjct: 508 RHDSTAWNASGSILNTLQQ---LKFYK---------PYICD----NDPKYERLVNAILDF 551
Query: 329 CLEHADRNLSCKSC 342
+ + + K
Sbjct: 552 LPKIEENLICSKYT 565
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 106 LLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 163
+L++G G GKSS VN I +V F SE + + R +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-------------VMVSRSRAGFT 88
Query: 164 FSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSL 206
++ DT L + N +N+IK ++++ L + R D+ +
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.94 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.85 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.79 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.75 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.73 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.72 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.71 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.7 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.69 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.67 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.67 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.63 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.58 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.57 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.55 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.54 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.53 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.49 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.49 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.48 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.45 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.44 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.42 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.4 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.39 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.38 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.38 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.35 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.35 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.35 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.34 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.33 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.33 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.33 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.32 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.31 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.31 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.26 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.23 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.22 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.22 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.21 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.19 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.17 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.17 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.16 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.16 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.08 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.08 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.06 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.05 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.05 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.04 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.98 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.96 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.95 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.91 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.89 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.89 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.88 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.86 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.85 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.85 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.85 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.84 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.78 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.73 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.69 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.63 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.61 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.55 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.55 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.52 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.5 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.49 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.44 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.43 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.38 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.37 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.35 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.3 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.3 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.26 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.25 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.24 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.21 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.18 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.16 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.15 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.14 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.14 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.13 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.1 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.09 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.07 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.05 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.04 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.03 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.02 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.01 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.97 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.93 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.91 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.91 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.89 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.88 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.88 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.87 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.85 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.85 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.73 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.71 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.68 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.64 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.61 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.61 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.61 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.6 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.59 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.59 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.57 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.56 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.53 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.49 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.44 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.42 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.42 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.4 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.39 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.3 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.28 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.27 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.24 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.2 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.2 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.2 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.16 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.16 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.15 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.13 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.11 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.04 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.04 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.02 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.0 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.99 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.99 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.98 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.95 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.91 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.9 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.9 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.88 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.88 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.88 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.87 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.85 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.85 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.85 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.85 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.83 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.82 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.81 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.79 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.77 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.77 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.75 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.75 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.73 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.73 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.73 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.72 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.71 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.7 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.68 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.68 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.68 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.68 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.67 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.63 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.63 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.62 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.61 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.6 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.56 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.55 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.55 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.54 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.54 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.53 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.53 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.53 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.52 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.52 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.52 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.5 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.5 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.5 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.5 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.5 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.49 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.48 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.47 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.46 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.46 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.46 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.45 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.45 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.44 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.44 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.43 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.43 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.42 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.42 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.42 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.41 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.41 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.41 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.4 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.39 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.38 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.37 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.37 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.37 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.37 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.36 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.36 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.35 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.35 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.34 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.34 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.33 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.33 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.32 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.32 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.29 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.29 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.29 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.28 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.28 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.27 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.26 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.26 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.25 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.25 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.24 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.24 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.24 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.23 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.22 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.22 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.2 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.2 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.19 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.18 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.17 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.16 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.16 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.15 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.15 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.14 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.14 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.14 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.14 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.13 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.13 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.13 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.12 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.1 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.1 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.09 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.09 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.09 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.09 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.09 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.08 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.04 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.03 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.03 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.03 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.02 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.02 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.02 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.02 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.01 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.0 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.99 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.98 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.98 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.97 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.96 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.95 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.95 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.94 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.94 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.91 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.91 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.91 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.91 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.9 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.89 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.88 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.88 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.86 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.86 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.85 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.85 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.85 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.84 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.82 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.82 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.8 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.78 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.78 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.77 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.75 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.74 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.72 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.72 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.72 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.7 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.7 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.69 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.68 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.65 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.63 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.62 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.62 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.61 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.6 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.6 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.6 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.59 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.58 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.58 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.53 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.51 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.51 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.51 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.5 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.5 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.5 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.49 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.47 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.47 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.47 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.47 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.46 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.44 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.39 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.37 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.28 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.26 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.21 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.18 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.14 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.13 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.12 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.12 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.11 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.09 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.09 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.08 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.03 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.85 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.83 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 94.8 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.77 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.76 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.75 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.74 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.74 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.72 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.71 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.71 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.69 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 94.69 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.68 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.67 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.66 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.63 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.6 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.58 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.53 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.51 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.51 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.51 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.46 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.43 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.4 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.37 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.29 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 94.22 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.2 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.2 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.19 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.17 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.13 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.11 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.1 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.09 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 94.08 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.01 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.01 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 94.01 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=364.65 Aligned_cols=217 Identities=14% Similarity=0.153 Sum_probs=174.1
Q ss_pred CCCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 68 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+++|+++||+++|+.+ ..+.+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 35789999999999643 22456 566999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
...... .....|+.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~----------TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~----- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGD----- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTS----------CHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGG-----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCC----------CHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCch-----
Confidence 622111 1111134567777765544333 444555544332 23456677888999999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+++++|.+|||||||||+||||| ||||++||. |+|||+|||
T Consensus 156 ------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 156 ------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp ------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
+.+..+|||+++ |++|++++.|++++++.+|.+++++.++..
T Consensus 224 l~~~~~~aDrv~v-l~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 224 MDVVKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp HHHHHHHCSEEEE-EETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 578899999975 999999999999999999999988887765
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=355.84 Aligned_cols=206 Identities=12% Similarity=0.161 Sum_probs=170.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999975 345 666999999999999999999999999999999999 999999999999862
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 125 (381)
T 3rlf_A 70 -----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAH-------- 125 (381)
T ss_dssp -----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 111223456666665544333 455555555432 23456777889999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred ---------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||||++ |++|++++.|++++++..|.+.++..++.
T Consensus 197 a~~~aDri~v-l~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 197 AMTLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHhCCEEEE-EECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 8899999975 99999999999999999988777665554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=355.76 Aligned_cols=208 Identities=13% Similarity=0.210 Sum_probs=167.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQN---TPV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 37999999999975 345 666999999999999999999999999999999999 9999999999987310
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
. ......++.++|++|+.. +++. ++.+|+.++... +..++.+.++++.++++.++|.+
T Consensus 72 ~--~~~~~~~r~ig~vfQ~~~-----------l~p~ltV~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 N--TNLPVRERRLGYLVQEGV-----------LFPHLTVYRNIAYGLGN-GKGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp S--CBCCGGGSCCEEECTTCC-----------CCTTSCHHHHHHTTSTT-SSCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred c--cccchhhCCEEEEeCCCc-----------CCCCCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHHcCCch-------
Confidence 0 011112334556655544 3333 566777766543 23345677788999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999984 899999999 5
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
++..+||||++ |++|+++..|++++++..|...+...++
T Consensus 201 ea~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~~a~~~ 239 (359)
T 3fvq_A 201 EALQYADRIAV-MKQGRILQTASPHELYRQPADLDAALFI 239 (359)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred HHHHHCCEEEE-EECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence 78899999975 9999999999999999988765544443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=340.19 Aligned_cols=201 Identities=13% Similarity=0.202 Sum_probs=158.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+.+.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...
T Consensus 6 ~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCCS
T ss_pred cEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCcc
Confidence 57999999999975433 4 777999999999999999999999999999999999 9999999999997410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.. .....++.++|++|+.... ++..++.+|+.++... ...+..+..+++.++++.++|.+
T Consensus 76 -~~-~~~~~~~~ig~v~Q~~~~~---------~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~-------- 135 (275)
T 3gfo_A 76 -RK-GIMKLRESIGIVFQDPDNQ---------LFSASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEH-------- 135 (275)
T ss_dssp -HH-HHHHHHHSEEEECSSGGGT---------CCSSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred -cc-cHHHHhCcEEEEEcCcccc---------cccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 00 0011123456666654211 1112444555554432 23345677788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+.++++.+||||||||++||||| ||||++||. |+|||+||| +.
T Consensus 136 ---------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 136 ---------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp ---------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 56899999999999999999999 999999984 889999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+..+|||+++ |++|++++.|++++++..
T Consensus 207 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 207 VPLYCDNVFV-MKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp GGGGCSEEEE-EETTEEEEEECHHHHTHH
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHhcC
Confidence 8889999975 999999999999998764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=343.88 Aligned_cols=205 Identities=15% Similarity=0.226 Sum_probs=165.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. . .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (362)
T 2it1_A 2 VEIKLENIVKKFGN-F--TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE- 69 (362)
T ss_dssp CCEEEEEEEEESSS-S--EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEeEEEEECC-E--EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 36999999999964 2 34 677999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 -----LPPKDRNVGLVFQNWALYPHM----------TVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp -----SCGGGTTEEEECTTCCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred -----CCHhHCcEEEEecCcccCCCC----------CHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 111124567777766554443 344444444322 12345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|++++.|++++++..|...++..++
T Consensus 197 a~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 197 ALAMADRIAV-IREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 8899999975 9999999999999999888765544444
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=346.36 Aligned_cols=212 Identities=14% Similarity=0.211 Sum_probs=166.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.. ...+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~i~~l~~~y~~~-~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKG-KVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASN 72 (353)
T ss_dssp CCEEEEEEEEEEGGG-TEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEET
T ss_pred cEEEEEeEEEEECCE-eeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECccc
Confidence 469999999999642 2004 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. .......++.++|++|+...+..+ ++.+|+.++... ...+..+.++++.++++.++|.+
T Consensus 73 ~-~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 132 (353)
T 1oxx_K 73 G-KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHH-------- 132 (353)
T ss_dssp T-EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred c-cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch--------
Confidence 0 000111133456666655443322 555666665432 23345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 133 ---------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 133 ---------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 204 ~~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 241 (353)
T 1oxx_K 204 IFAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (353)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 8899999975 9999999999999999888766554444
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=343.13 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=167.4
Q ss_pred CCCcEEEeeeEEEe-CCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 68 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 68 ~~~~l~i~nl~~~y-~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..++|+++||+++| +. . .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~-~--~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG-A--RS---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTS-T--TC---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCC-C--EE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 45789999999999 54 2 23 777999999999999999999999999999999999 9999999999998
Q ss_pred CCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.. ....++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 80 ~~------~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 80 TD------LPPQKRNVGLVFQNYALFQHM----------TVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp TT------CCGGGSSEEEECGGGCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred Cc------CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChh-----
Confidence 52 111234566777665544433 344454444332 12345566788999999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH- 279 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+++..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 206 ~~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 206 QEEALEVADRVLV-LHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 578899999975 9999999999999999887766544444
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=332.48 Aligned_cols=212 Identities=17% Similarity=0.137 Sum_probs=162.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC-
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 148 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~- 148 (347)
++|+++||+++|+. ..+ |+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 47999999999964 234 667999999999999999999999999999999999 999999999998741
Q ss_pred ----C----ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC
Q 019048 149 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (347)
Q Consensus 149 ----~----~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 220 (347)
. .........++.++|++|+...+..+ ++.+|+.++.......+....++++.++++.+||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 143 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCC----------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 0 00000000123456777665444333 33444443221111223445567889999999998
Q ss_pred cccccccceeeeeechhhh-hccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE
Q 019048 221 PSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 274 (347)
Q Consensus 221 ~~~~~~~~~~~~vvd~~~~-~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti 274 (347)
+ . +++++.+||||||||++||||| ||||++||. |+||
T Consensus 144 ~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 144 E-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp H-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred c-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 7 5 6899999999999999999999 999999984 8999
Q ss_pred EEEec--hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 275 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 275 IiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
|+||| +.+..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 207 i~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp EEECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 99999 577889999975 9999999999999998876655544443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=332.23 Aligned_cols=207 Identities=14% Similarity=0.194 Sum_probs=160.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~---~~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 47999999999964 234 677999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
... .....++.++|++|+...+..+ ++.+|+.++.............+++.++++.++|.+
T Consensus 91 ~~~-~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------- 151 (263)
T 2olj_A 91 KDT-NLNKVREEVGMVFQRFNLFPHM----------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-------- 151 (263)
T ss_dssp TTC-CHHHHHHHEEEECSSCCCCTTS----------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG--------
T ss_pred ccc-cHHHHhCcEEEEeCCCcCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch--------
Confidence 000 0001123456777765444332 333444432211112234455677889999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 152 ---------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 152 ---------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 45899999999999999999999 999999984 899999999 577
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 317 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 317 (347)
..+||++++ |++|++++.|++++++..+..++++
T Consensus 223 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~ 256 (263)
T 2olj_A 223 REVGDRVLF-MDGGYIIEEGKPEDLFDRPQHERTK 256 (263)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHH
Confidence 889999975 9999999999999998776554433
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=345.85 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=163.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECC---EEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 456999999999964 334 666999999999999999999999999999999999 999999999999851
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
....++.++|++| ++.+++. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 78 ------~~~~~r~ig~v~Q-----------~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ------LPPKDRNISMVFQ-----------SYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ------SCGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ------CChhhCcEEEEec-----------CcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1111223455554 4444443 6667777665422 3345566788999999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+++..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 203 ~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 203 VEAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 578899999975 9999999999999999887765544444
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=343.41 Aligned_cols=205 Identities=13% Similarity=0.201 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGK---VKA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 36999999999964 344 666999999999999999999999999999999999 999999999999852
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 -----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (359)
T 2yyz_A 70 -----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN-------- 125 (359)
T ss_dssp -----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG--------
T ss_pred -----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111123456666665444332 4556666554321 2223445678899999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 126 ---------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 126 ---------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp ---------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 197 ~~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 197 AMTMASRIAV-FNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 8899999975 9999999999999999888765544444
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=324.59 Aligned_cols=203 Identities=18% Similarity=0.148 Sum_probs=152.7
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+|+++||+++|+.+. ...+ |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 2345 666999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.........++.++|++|+...+..+ ++.+|+.++.... ......+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCC----------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh-----
Confidence 11111111122356666665443332 4445555443211 123455667788999999999862
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~ 280 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+||| -
T Consensus 138 -----------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 23889999999999999999999 999999984 899999999 3
Q ss_pred HHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
.+..+|||+++ |++|++++.++++++.
T Consensus 207 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 207 NVARFGERIIY-LKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTSSEEEE-EETTEEEEEEECC---
T ss_pred HHHHhCCEEEE-EECCEEEEEcChhhhc
Confidence 45689999975 9999999998877653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=341.55 Aligned_cols=201 Identities=13% Similarity=0.190 Sum_probs=162.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999752 3 777999999999999999999999999999999999 999999999999752
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+..+ ++.+|+.++.... ..++. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~enl~~~~~~~-~~~~~---~~v~~~l~~~~L~~--------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMK-KIKDP---KRVLDTARDLKIEH--------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHH-CCCCH---HHHHHHHHHTTCTT---------
T ss_pred ----CchhhCcEEEEecCcccCCCC----------CHHHHHHHHHHHc-CCCHH---HHHHHHHHHcCCch---------
Confidence 111123456777665554443 3444444443221 11222 67889999999988
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +++
T Consensus 120 --------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~ 191 (348)
T 3d31_A 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (348)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999984 899999999 578
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
..+|||+++ |++|+++..|++++++..|...++..++.
T Consensus 192 ~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 192 RIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 899999975 99999999999999999988777665554
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=342.67 Aligned_cols=211 Identities=13% Similarity=0.172 Sum_probs=165.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 36999999999964 344 666999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.........++.++|++|+...+..+ ++.+|+.++... ...++.+.++++.++++.++|.+
T Consensus 71 ~~~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~-------- 131 (372)
T 1g29_1 71 EKGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGLTE-------- 131 (372)
T ss_dssp GGTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTCGG--------
T ss_pred cccccCCHhHCCEEEEeCCCccCCCC----------CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCch--------
Confidence 00000111134566777665544433 344455444332 12345566788999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 281 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~ 281 (347)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 132 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 132 ---------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+..+|||+++ |++|+++..|++++++..|...++..++
T Consensus 203 a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~ 240 (372)
T 1g29_1 203 AMTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (372)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 8899999975 9999999999999999887765544443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=337.09 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=152.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++||+|+|+.+..+ |++|||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 52 ~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQV 121 (306)
T ss_dssp CCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-----CSEEEEEETTEETTSB
T ss_pred CeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCcEEEECCEEcccC
Confidence 359999999999654434 777999999999999999999999999999999999 9999999999998611
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. . ...|+.++|++|+.. ++..++.+|+.++... .. .+++.++++.+++.+.+...|++
T Consensus 122 ~---~-~~~r~~i~~v~Q~~~-----------lf~~Tv~eNi~~~~~~---~~----~~~~~~~~~~~~l~~~i~~lp~g 179 (306)
T 3nh6_A 122 T---Q-ASLRSHIGVVPQDTV-----------LFNDTIADNIRYGRVT---AG----NDEVEAAAQAAGIHDAIMAFPEG 179 (306)
T ss_dssp C---H-HHHHHTEEEECSSCC-----------CCSEEHHHHHHTTSTT---CC----HHHHHHHHHHHTCHHHHHHSTTG
T ss_pred C---H-HHHhcceEEEecCCc-----------cCcccHHHHHHhhccc---CC----HHHHHHHHHHhCcHHHHHhccch
Confidence 0 0 001233455555544 4433555666654321 11 23456677777776655445555
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec--hHHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH--~~~~ 283 (347)
+.+.++ +.+.+||||||||++||||| ||||++||. ++|+|+||| ..+.
T Consensus 180 l~t~~~------~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 180 YRTQVG------ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253 (306)
T ss_dssp GGCEES------TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHH
T ss_pred hhhHhc------CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHH
Confidence 555554 44679999999999999999 999999984 899999999 4554
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.||+|++ |++|++++.|++++++..
T Consensus 254 -~aD~i~v-l~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 254 -NADQILV-IKDGCIVERGRHEALLSR 278 (306)
T ss_dssp -TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred -cCCEEEE-EECCEEEEECCHHHHHhc
Confidence 4999975 999999999999998864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=316.20 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=161.7
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+. + |+++||+|++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4789999999963 4 7779999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+|+.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH---------
Confidence 111234567777765443332 3445554433211 11223567889999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+.++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999984 799999999 567
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 325 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 325 (347)
..+||++++ |++|++++.|++++++..+ ++++..++...+.
T Consensus 191 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 889999975 9999999999999999887 7777666654433
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=326.00 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=154.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||++.|+. ..+ |++|||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~---~~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ---QAL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCC---eeE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 468999999999975 344 667999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.... . .++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~~~---~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQPK---A-LARTRAVMRQYSELAFPF----------SVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SCHH---H-HHHHEEEECSCCCCCSCC----------BHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CCHH---H-HhheEEEEecCCccCCCC----------CHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 1110 0 112345666654332222 4555555543321 22345677889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC-----------------CCeEEE
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tiIi 276 (347)
+.++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45889999999999999999997 999999984 579999
Q ss_pred Eec--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 277 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||| +.+..+|||+++ |++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~v-l~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIML-LAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEEE-EECCEEEEEcCHHHHhC
Confidence 999 578889999975 99999999999998865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=324.45 Aligned_cols=196 Identities=13% Similarity=0.197 Sum_probs=152.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+++|+++||+++|+. .++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC---Eee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 457999999999964 234 667999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh-ccC-----------CChHHHHHHHHHHHHH
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 216 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~-~~~-----------~~~~~~~~~i~~~l~~ 216 (347)
.. .....++.++|++|+...+..+ ++.+|+.++... ... ......++++.++++.
T Consensus 74 ~~---~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 KE---PAELYHYGIVRTFQTPQPLKEM----------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGS----------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred CC---HHHHHhCCEEEEccCCccCCCC----------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 10 0011122345555554332221 455666554321 001 2234556778899999
Q ss_pred CCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------C
Q 019048 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 271 (347)
Q Consensus 217 ~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 271 (347)
+||++ .+++++.+||||||||++||||| ||||++||. |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 45899999999999999999999 999999984 8
Q ss_pred CeEEEEec--hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 272 ~tiIiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
+|||++|| +.+..+||++++ |++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLYV-MFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEEE-EETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEEE-EECCEEEEEeCHHH
Confidence 99999999 578889999975 99999999998887
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=320.48 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=157.7
Q ss_pred CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 68 ~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~---~~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECC---EEE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 5789999999999964 234 667999999999999999999999999999999999 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.. . ...++.++|++|+...+..+ +.+|+.+.. ... .......++++.++++.+||.+
T Consensus 81 ~~----~-~~~~~~i~~v~q~~~l~~~ltv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 EE----P-HEVRKLISYLPEEAGAYRNMQGIEYLRFVA-----------GFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp TC----H-HHHHTTEEEECTTCCCCTTSBHHHHHHHHH-----------HHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred cc----H-HHHhhcEEEEcCCCCCCCCCcHHHHHHHHH-----------HHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 20 0 11134567888876555443 566654422 111 2223445567889999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45889999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+..+||++++ |++|++++.|++++++..
T Consensus 207 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIAL-IHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEEE-EETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEEE-EECCEEEEecCHHHHHHh
Confidence 577889999975 999999999999888654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=312.41 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=148.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~---~~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC---Eee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999974 234 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...+.....++.++|++|+...+..+ +.+|+. ++.... .......++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVI-----------VPMLKM-GKPKKEAKERGEYLLSELGLGD------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH-----------hHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10000001113456777765444333 455443 332211 2233455677889999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDL 282 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~ 282 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| ...
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 133 ----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 45899999999999999999999 999999984 899999999 233
Q ss_pred HhcccEEEEEeeCCeEeecCC
Q 019048 283 LSLTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~ 303 (347)
..+||++++ |++|++++.|+
T Consensus 203 ~~~~d~v~~-l~~G~i~~~g~ 222 (224)
T 2pcj_A 203 AELTHRTLE-MKDGKVVGEIT 222 (224)
T ss_dssp HTTSSEEEE-EETTEEEEEEE
T ss_pred HHhCCEEEE-EECCEEEEEee
Confidence 489999975 99999998875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=316.81 Aligned_cols=197 Identities=16% Similarity=0.239 Sum_probs=153.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC---eeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 357999999999974 234 677999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCC-CCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~g-l~~~~~~~~ 227 (347)
.. .....++.++|++|+...+..+ ++.+|+.++... ........+.+.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 11 1111123466777765444332 344444443211 1123345567788899994 876
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45889999999999999999999 999999984 899999999 4
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+..+||++++ |++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGYV-LETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHhc
Confidence 78899999975 99999999999888764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=319.75 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=154.3
Q ss_pred cEEEeeeEEEeC-CCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~-~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+|+++||+++|+ ++. ...+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 589999999996 221 0234 677999999999999999999999999999999999 999999999998751
Q ss_pred CccccccccCCCccceeeccc-cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC--ccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~-~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~~~ 225 (347)
.. .++.++|++|+. ..+.. .++.+|+.++.... ......++++.++++.+||. +
T Consensus 74 ------~~-~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YE-IRRNIGIAFQYPEDQFFA----------ERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HH-HGGGEEEECSSGGGGCCC----------SSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HH-hhhhEEEEeccchhhcCC----------CcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 11 123456776653 22211 14445555443211 11223346788899999998 7
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec-
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH- 279 (347)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56899999999999999999999 999999983 899999999
Q ss_pred -hHHHhcccEEEEEeeCCeEeecCCcccccCCCCC
Q 019048 280 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313 (347)
Q Consensus 280 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 313 (347)
+.+..+||++++ |++|++++.|++++++..+.+
T Consensus 198 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVVV-LEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEEE-EETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCccc
Confidence 577789999975 999999999999998866543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=314.49 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=148.1
Q ss_pred cEEEeeeEEEeC-CCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~-~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
-|+++||+++|+ .+. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 389999999993 233 34 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ... .++.++|++|+... +..++.+|+.++.. ... .+++.++++.+++.+.+...|++
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l-----------~~~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVL-----------LNRSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCC-----------TTSBHHHHHTTTCT---TCC----HHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCcc-----------ccccHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcch
Confidence 0 000 12234555555433 22345566655321 111 23456677777776522111111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~ 284 (347)
+ .+..++++.+||||||||++||||| ||||++||. |+|||+||| .....
T Consensus 135 l------~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 Y------NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp G------GCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred h------hhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 1 1123455789999999999999999 999999984 899999999 23335
Q ss_pred cccEEEEEeeCCeEeecCCcccccCCCCCCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 315 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 315 (347)
.||++++ |++|++++.|++++++..|...+
T Consensus 209 ~~d~v~~-l~~G~i~~~g~~~~l~~~~~~~~ 238 (247)
T 2ff7_A 209 NADRIIV-MEKGKIVEQGKHKELLSEPESLY 238 (247)
T ss_dssp TSSEEEE-EETTEEEEEECHHHHHTSTTCHH
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhCCchHH
Confidence 6999975 99999999999999987764333
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=309.25 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=147.2
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++|+.+. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~- 69 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE--QI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (243)
T ss_dssp CEEEEEEEECSSSSS--CS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEEeCCCC--ce---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC-
Confidence 489999999994223 23 777999999999999999999999999999999999 9999999999987521
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.. ...++.++|++|+...+. .++.+|+.++.. .... .+++.++++.+++.+.+...|+++
T Consensus 70 --~~-~~~~~~i~~v~q~~~l~~-----------~tv~enl~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 70 --SL-ENWRSQIGFVSQDSAIMA-----------GTIRENLTYGLE--GDYT----DEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp --SC-SCCTTTCCEECCSSCCCC-----------EEHHHHTTSCTT--SCSC----HHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred --CH-HHHHhhEEEEcCCCcccc-----------ccHHHHHhhhcc--CCCC----HHHHHHHHHHhChHHHHHhCccch
Confidence 11 112345677777654332 244555554321 0111 245677888888876331111111
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEech-HHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH~-~~~~~ 285 (347)
. +..++++.+||||||||++||||| ||||++||. |+|||++||+ .....
T Consensus 130 ~------~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 130 N------TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp G------CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred h------chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 1 122455789999999999999999 999999984 8999999992 33346
Q ss_pred ccEEEEEeeCCeEeecCCcccccC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
||++++ |++|++++.|++++++.
T Consensus 204 ~d~v~~-l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 204 ADKIYF-IEKGQITGSGKHNELVA 226 (243)
T ss_dssp CSEEEE-EETTEECCCSCHHHHHH
T ss_pred CCEEEE-EECCEEEEeCCHHHHHh
Confidence 999975 99999999999887764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=315.86 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=151.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~y~~---~~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECC---EEE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 357999999999974 234 677999999999999999999999999999999999 999999999987630
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc---cCCChHHHHHHHHHHHHHCCCCccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~---~~~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
. ...... .++.++|++|+...+.. ...++.+|+.++.... .........+++.++++.+||.+
T Consensus 88 ~-~~~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 153 (279)
T 2ihy_A 88 V-GYSAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA---- 153 (279)
T ss_dssp ---CCHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG----
T ss_pred c-cCCHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh----
Confidence 0 000000 12345566655432110 0014555555432110 01112344577889999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeE--EEEe
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVVT 278 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~ti--IiiT 278 (347)
.+++++.+||||||||++||||| ||||++||. |+|| |+||
T Consensus 154 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 154 -------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 45899999999999999999999 999999984 7899 9999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 221 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 221 HFIEEITANFSKILL-LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp SCGGGCCTTCCEEEE-EETTEEEEEEEHHHHCS
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEECCHHHHhc
Confidence 9 567789999975 99999999999888764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=307.41 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=144.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDG---ETI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECC---EEE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 37999999999964 234 6779999999999999999999999999999998 78 99999999999875
Q ss_pred CCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccccc
Q 019048 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 225 (347)
Q Consensus 148 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~ 225 (347)
... .....+..++|++|+...+..+ +.+|+.+..... ...........+++.++++.+|++ +
T Consensus 71 ~~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~gl~~~---- 134 (250)
T 2d2e_A 71 ELS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK---------LGREVGVAEFWTKVKKALELLDWDES---- 134 (250)
T ss_dssp TSC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH---------HTSCCCHHHHHHHHHHHHHHHTCCGG----
T ss_pred CCC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh---------ccccCCHHHHHHHHHHHHHHcCCChh----
Confidence 211 1111123456777776655544 555554322110 000112234456788899999995 5
Q ss_pred ccceeeeeechhhhhccCCCC-CCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~-LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH 279 (347)
+.++++.+ ||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 -------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 135 -------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp -------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45888999 999999999999999 999999873 799999999
Q ss_pred --hHHHhc-ccEEEEEeeCCeEeecCCcc
Q 019048 280 --GDLLSL-TDRARIRTYLGELLGIPPAK 305 (347)
Q Consensus 280 --~~~~~~-aDri~v~l~~G~iv~~g~~~ 305 (347)
+.+..+ ||++++ |++|++++.|+++
T Consensus 202 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRILNYIQPDKVHV-MMDGRVVATGGPE 229 (250)
T ss_dssp SSGGGGTSCCSEEEE-EETTEEEEEESHH
T ss_pred CHHHHHHhcCCEEEE-EECCEEEEEeCHH
Confidence 567777 599975 9999999998875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=331.84 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=156.6
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
...|+++||+|+|+.+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 35699999999995322 234 677999999999999999999999999999999986 57999999998862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
... . ..++.++|++|+...+ +.++.+|+.+.. . ..++++.++++.++|.+
T Consensus 87 ~~~---~-~~rr~ig~v~Q~~~lf-----------~~tv~enl~~~~----~----~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 87 ITL---E-QWRKAFGVIPQKVFIF-----------SGTFRKNLDPNA----A----HSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp SCH---H-HHHHTEEEESCCCCCC-----------SEEHHHHHCTTC----C----SCHHHHHHHHHHTTCHH-------
T ss_pred CCh---H-HHhCCEEEEcCCcccC-----------ccCHHHHhhhcc----c----cCHHHHHHHHHHhCCHH-------
Confidence 110 0 0123455666655443 334555554211 1 12356778999999987
Q ss_pred eeeeeechhhhhccCCCC-----------CCHHHHHHHHHHHHh---------chhccCCCC---------------CCe
Q 019048 229 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 273 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~-----------LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~t 273 (347)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 45777777 999999999999999 999999883 899
Q ss_pred EEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 274 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 274 iIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+|+||| ..+...||||++ |++|+|++.|++++++..|.+.++..++.
T Consensus 207 vi~vtHd~e~~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFLV-IEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEEE-EETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 456677999975 99999999999999999998777666654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=313.92 Aligned_cols=198 Identities=10% Similarity=0.103 Sum_probs=145.3
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+....+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 15 ~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~ 86 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLVQY 86 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGGB
T ss_pred ceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcccC
Confidence 57999999999964211123 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHH-----HHHHHHHHHHHC--CCCcc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GCEPS 222 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~-----~~~~i~~~l~~~--gl~~~ 222 (347)
... ..++.++|++|+...+. .++.+|+.++.... ..... ....+.++++.+ |++.
T Consensus 87 ---~~~-~~~~~i~~v~Q~~~l~~-----------~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~- 148 (271)
T 2ixe_A 87 ---DHH-YLHTQVAAVGQEPLLFG-----------RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDT- 148 (271)
T ss_dssp ---CHH-HHHHHEEEECSSCCCCS-----------SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGS-
T ss_pred ---CHH-HHhccEEEEecCCcccc-----------ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhh-
Confidence 000 01224566666554332 24455555432210 01011 112345567777 5655
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 276 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIi 276 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 149 ----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 149 ----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp ----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred ----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 34788999999999999999999 999999873 789999
Q ss_pred Eech-HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 277 VTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 277 iTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|||+ .....||++++ |++|++++.|++++++..
T Consensus 213 vtHd~~~~~~~d~v~~-l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 213 ITQQLSLAERAHHILF-LKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp ECSCHHHHTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred EeCCHHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 9992 33345999975 999999999999888754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=336.99 Aligned_cols=227 Identities=12% Similarity=0.178 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhhhhhhhc---c---CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRT---R---IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~---~---~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
......|+.++++.+++... . ....|+++||+|+|+++. ..+ |+|+||+|++||++||+||||||||||+
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 311 GMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCCCCHHHHH
Confidence 33456677887765433211 1 124699999999997431 234 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.. +...+.+...++|+|++.++..++.+|+.++.. ..
T Consensus 387 ~~l~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~ 444 (582)
T 3b5x_A 387 NLFTRFYD-----VDSGSICLDGHDVRD---------------YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE--GE 444 (582)
T ss_pred HHHhcCCC-----CCCCEEEECCEEhhh---------------CCHHHHhcCeEEEcCCCccccccHHHHHhccCC--CC
Confidence 99999999 999999999998751 111222333444555555555577788776531 01
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
..++++.++++.+++.+.+...|+++.+.+++ .+.+||||||||++||||| ||||++||.
T Consensus 445 ----~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~------~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 445 ----YTREQIEQAARQAHAMEFIENMPQGLDTVIGE------NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred ----CCHHHHHHHHHHCCCHHHHHhCcccccchhcC------CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 12356778899999987665666666665544 4679999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||++++ |++|++++.|++++++..
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 515 SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV-VDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 334457999975 999999999999999865
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=303.89 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=151.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc--ccCCCCCCCCcEEEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl--~~~~~~~p~~G~I~~~g~~i 146 (347)
+++|+++||+++|+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|+++
T Consensus 18 ~~~l~~~~l~~~y~~---~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEECC---EEE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 458999999999964 234 6679999999999999999999999999999999 46 8999999999987
Q ss_pred CCCccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhh--hhhhhccCCChHHHHHHHHHHHHHCCCCccc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVR--HGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~--~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ 223 (347)
.... .....+..++|++|+...+..+ +.+++.+... +.. .+. ......+..+++.++++.+|+...
T Consensus 87 ~~~~---~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~~- 155 (267)
T 2zu0_C 87 LALS---PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALN----AVRSYRGQ---ETLDRFDFQDLMEEKIALLKMPED- 155 (267)
T ss_dssp GGSC---HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHH----HHHHGGGC---CCCCHHHHHHHHHHHHHHTTCCTT-
T ss_pred CcCC---HHHHhhCCEEEEccCccccccccHHHHHHHHHH----hhhhhhcc---ccCCHHHHHHHHHHHHHHcCCChh-
Confidence 4111 1111122467888877665554 5666543211 111 010 012234456678899999999642
Q ss_pred ccccceeeeeechhhhhccCCC-CCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEE
Q 019048 224 IRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 224 ~~~~~~~~~vvd~~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIii 277 (347)
+.++++. +||||||||++||||| ||||++||. |+|||++
T Consensus 156 ---------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 156 ---------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp ---------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred ---------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3477887 5999999999999999 999999873 7899999
Q ss_pred ec--hHHHhc-ccEEEEEeeCCeEeecCCccccc
Q 019048 278 TH--GDLLSL-TDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 278 TH--~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
|| +.+..+ ||++++ |++|++++.|++++++
T Consensus 221 tHd~~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 221 THYQRILDYIKPDYVHV-LYQGRIVKSGDFTLVK 253 (267)
T ss_dssp CSSGGGGGTSCCSEEEE-EETTEEEEEECTTHHH
T ss_pred eeCHHHHHhhcCCEEEE-EECCEEEEEcCHHHHh
Confidence 99 456665 899975 9999999999887654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=367.71 Aligned_cols=231 Identities=15% Similarity=0.134 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 46 DQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
.......|+.++++..++.... ...-|+++||+|+|+.+...++ |+|+||+|++||.+|||||||||||
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKS 1119 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTT
T ss_pred HHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHH
Confidence 3444566788877655442111 1235999999999975433344 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.|+. .+...+.|...++|+|++.++..++.+|+.+|...
T Consensus 1120 TL~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1120 TVVALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp SHHHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred HHHHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 99999999999 99999999999997 34445555555556666666666677777655321
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
.....+++.++++.+++.+.+...|+++.+.|.+. ..+||||||||++||||| |||||+|
T Consensus 1180 -----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~------G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1180 -----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR------GTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp -----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT------SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred -----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC------CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 12234668889999999988888899999999887 358999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
|. ++|+|+||| -.....||||+| |++|+|+|.|+|+++++..
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V-ld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV-VSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE-ESSSSEEEEECHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 84 899999999 355667999975 9999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=338.35 Aligned_cols=226 Identities=11% Similarity=0.109 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
......|+.++++.+++.... ....|+++||+|+|+.+. ..+ |+|+||+|++||++||+|||||||||
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCChHHH
Confidence 344566888887665432111 123599999999997532 234 77799999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++... .. ...|+.+++++|+.. ++..++.+|+.++..
T Consensus 383 ll~~l~g~~~-----p~~G~i~~~g~~~~~~---~~-~~~r~~i~~v~Q~~~-----------l~~~tv~eni~~~~~-- 440 (578)
T 4a82_A 383 LINLIPRFYD-----VTSGQILIDGHNIKDF---LT-GSLRNQIGLVQQDNI-----------LFSDTVKENILLGRP-- 440 (578)
T ss_dssp HHTTTTTSSC-----CSEEEEEETTEEGGGS---CH-HHHHHTEEEECSSCC-----------CCSSBHHHHHGGGCS--
T ss_pred HHHHHhcCCC-----CCCcEEEECCEEhhhC---CH-HHHhhheEEEeCCCc-----------cCcccHHHHHhcCCC--
Confidence 9999999999 9999999999998611 00 001233455555544 443455566655432
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
.. ..+++.++++.+++.+.+...|+++.+.+++. +.+||||||||++||||| ||||++||
T Consensus 441 -~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~------g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 441 -TA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGER------GVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp -SC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG------GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred -CC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 11 12456677888888776666667777666654 568999999999999999 99999998
Q ss_pred C---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. ++|+|+||| -.....||||++ |++|++++.|++++++..
T Consensus 510 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~-l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV-IENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEE-EETTEEEEEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 4 899999999 334456999975 999999999999999865
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=335.48 Aligned_cols=225 Identities=10% Similarity=0.084 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhhhhhhhc---c---CCCcEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---R---IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---~---~~~~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++... . ....|+++||+|+|+++ ..+ |+|+||+|++||++||+||||||||||+
T Consensus 312 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp HHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 3456677887765443211 1 12469999999999743 333 7779999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.... .. ..++.+++++|+...+ ..++.+|+.++.. ..
T Consensus 387 ~~l~g~~~-----p~~G~i~~~g~~~~~~~---~~-~~~~~i~~v~Q~~~l~-----------~~tv~eni~~~~~--~~ 444 (582)
T 3b60_A 387 SLITRFYD-----IDEGHILMDGHDLREYT---LA-SLRNQVALVSQNVHLF-----------NDTVANNIAYART--EE 444 (582)
T ss_dssp HHHTTTTC-----CSEEEEEETTEETTTBC---HH-HHHHTEEEECSSCCCC-----------SSBHHHHHHTTTT--SC
T ss_pred HHHhhccC-----CCCCeEEECCEEccccC---HH-HHHhhCeEEccCCcCC-----------CCCHHHHHhccCC--CC
Confidence 99999999 99999999999986110 00 0122345555554443 3345566655431 01
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
. .++++.++++.+++.+.+...|+++.+.+++ .+.+||||||||++||||| ||||++||.
T Consensus 445 ~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~------~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 445 Y----SREQIEEAARMAYAMDFINKMDNGLDTIIGE------NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp C----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT------TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred C----CHHHHHHHHHHcCCHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 1 1356778899999987665566666665544 4679999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -...+.||++++ |++|++++.|++++++..
T Consensus 515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV-VEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-EECCEEEEecCHHHHHHc
Confidence 899999999 344457999975 999999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=336.32 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhhhhhhhcc--------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 119 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTL 119 (347)
.....|+.++++.+++..+. ....|+++||+|+|+.+. ..+ |+|+||+|++||++||+||||||||||
T Consensus 310 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp HHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 34566888887655432111 123599999999996432 234 777999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhcc
Q 019048 120 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 199 (347)
Q Consensus 120 lk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~ 199 (347)
+++|+|+++ |++|+|.++|+++... +. ...|+.+++++|+. .++..++.+|+.++..
T Consensus 386 l~~l~g~~~-----~~~G~i~i~g~~i~~~---~~-~~~r~~i~~v~Q~~-----------~lf~~tv~eni~~~~~--- 442 (587)
T 3qf4_A 386 MNLIPRLID-----PERGRVEVDELDVRTV---KL-KDLRGHISAVPQET-----------VLFSGTIKENLKWGRE--- 442 (587)
T ss_dssp HHTTTTSSC-----CSEEEEEESSSBGGGB---CH-HHHHHHEEEECSSC-----------CCCSEEHHHHHTTTCS---
T ss_pred HHHHhCCcc-----CCCcEEEECCEEcccC---CH-HHHHhheEEECCCC-----------cCcCccHHHHHhccCC---
Confidence 999999999 9999999999987510 00 00122345555554 4443355566654432
Q ss_pred CCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC
Q 019048 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 270 (347)
Q Consensus 200 ~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 270 (347)
... .+++.++++..++.+.+...|+++.+.++ +.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~------~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 443 DAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVE------RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp SCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEEC------SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred CCC----HHHHHHHHHHhCcHHHHHhcccchhhHhc------CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 111 23455667777776655555555555544 45789999999999999999 999999983
Q ss_pred ---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 ---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||||++ |++|++++.|++++++..
T Consensus 513 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v-l~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 513 ITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV-LHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 344568999975 999999999999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=298.66 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=145.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+.+.. + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 3 ~~l~i~~l~~~y~~~~~--v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~------- 65 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF--L---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEVY------- 65 (253)
T ss_dssp EEEEEEEEEEEETTTTE--E---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEEC-------
T ss_pred ceEEEeeEEEEeCCCCe--E---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEe-------
Confidence 36999999999972233 4 777999999999999999999999999999999999 999999821
Q ss_pred ccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccC---CChHHHHHHHHHHHHHCCCCccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIR 225 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~---~~~~~~~~~i~~~l~~~gl~~~~~~ 225 (347)
+.++|++|+...+..+ +.+|+. ++...... .......+++.++++.+|+.+
T Consensus 66 ----------~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 120 (253)
T 2nq2_C 66 ----------QSIGFVPQFFSSPFAYSVLDIVL-----------MGRSTHINTFAKPKSHDYQVAMQALDYLNLTH---- 120 (253)
T ss_dssp ----------SCEEEECSCCCCSSCCBHHHHHH-----------GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG----
T ss_pred ----------ccEEEEcCCCccCCCCCHHHHHH-----------HhhhhhcccccCCCHHHHHHHHHHHHHcCChH----
Confidence 2357888876544332 455443 33211100 112344577889999999987
Q ss_pred ccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec
Q 019048 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 279 (347)
Q Consensus 226 ~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH 279 (347)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 121 -------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 121 -------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889999999999999999999 999999873 789999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+..+||++++ |++|+ ++.|++++++.
T Consensus 188 d~~~~~~~~d~v~~-l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 188 QPNQVVAIANKTLL-LNKQN-FKFGETRNILT 217 (253)
T ss_dssp CHHHHHHHCSEEEE-EETTE-EEEEEHHHHCC
T ss_pred CHHHHHHhCCEEEE-EeCCe-EecCCHHHHhC
Confidence 567789999975 99999 99999888763
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=339.19 Aligned_cols=224 Identities=15% Similarity=0.181 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhhhhhhcc-------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHH
Q 019048 48 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLl 120 (347)
.....|+.++++.+++.... ....|+++||+|+|+.+. .+ |+|+||+|++||++||+||||||||||+
T Consensus 324 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PV---LKDITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp HHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS--CS---CCSEEEECCTTCEEEEECCTTSSTTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceEEEEcCCCEEEEECCCCCcHHHHH
Confidence 44666888887655432111 123599999999997543 34 6669999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccC
Q 019048 121 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 200 (347)
Q Consensus 121 k~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~ 200 (347)
|+|+|+++ |++|+|.++|+++.... . ...|+.+++++|+. .++..++.+|+.++.. .
T Consensus 399 ~~l~g~~~-----p~~G~i~~~g~~i~~~~---~-~~~r~~i~~v~Q~~-----------~lf~~tv~eni~~~~~---~ 455 (598)
T 3qf4_B 399 NLLMRFYD-----VDRGQILVDGIDIRKIK---R-SSLRSSIGIVLQDT-----------ILFSTTVKENLKYGNP---G 455 (598)
T ss_dssp HHHTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECTTC-----------CCCSSBHHHHHHSSST---T
T ss_pred HHHhcCcC-----CCCeEEEECCEEhhhCC---H-HHHHhceEEEeCCC-----------ccccccHHHHHhcCCC---C
Confidence 99999999 99999999999986110 0 00122345555554 4444455566655422 1
Q ss_pred CChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-
Q 019048 201 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 270 (347)
Q Consensus 201 ~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 270 (347)
.. .+++.++++.+++.+.+...|+++.+.+++. +.+||||||||++||||| ||||++||.
T Consensus 456 ~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~------g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 456 AT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTDN------GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp CC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH------HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred CC----HHHHHHHHHHhCCHHHHHhccccccchhcCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 11 2345667778888776656666776666655 358999999999999999 999999984
Q ss_pred --------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 271 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 271 --------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|+|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 526 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV-LRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEE-ECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 233455999975 999999999999999865
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=302.53 Aligned_cols=203 Identities=11% Similarity=0.139 Sum_probs=145.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||+++|+......+ |+++||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|+++...
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~~ 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNKY 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGGB
T ss_pred CeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhhc
Confidence 57999999999975321124 677999999999999999999999999999999998 7 79999999987411
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.... .++.++|++|+...+. .++.+|+.++.. ... .+++.++++.+++.+.+...++.
T Consensus 87 ---~~~~-~~~~i~~v~Q~~~l~~-----------~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~ 144 (260)
T 2ghi_A 87 ---NRNS-IRSIIGIVPQDTILFN-----------ETIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKK 144 (260)
T ss_dssp ---CHHH-HHTTEEEECSSCCCCS-----------EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred ---CHHH-HhccEEEEcCCCcccc-----------cCHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhcccc
Confidence 0001 1234566666654332 244455554321 111 23456677777775421001111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEech-HHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH~-~~~~ 284 (347)
+. +..++++.+||||||||++||||| ||||++||. ++|||+|||+ ....
T Consensus 145 ~~------~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 145 WD------TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp GG------CEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred cc------ccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 10 113467889999999999999999 999999984 7999999992 3335
Q ss_pred cccEEEEEeeCCeEeecCCcccccCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.||++++ |++|++++.|++++++..
T Consensus 219 ~~d~i~~-l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 219 SAESIIL-LNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhc
Confidence 6999975 999999999999888753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=300.19 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=145.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
+|+++||+++ .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++...
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~- 66 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAW- 66 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGS-
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcC-
Confidence 6999999986 14 788999999999999999999999999999999999 99 9999999987410
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.... .++.++|++|+...+..+ ++.+|+.++... ... .+++.++++.+|+.+
T Consensus 67 --~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 67 --SATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KTR----TELLNDVAGALALDD--------- 118 (249)
T ss_dssp --CHHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGG---------
T ss_pred --CHHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CCc----HHHHHHHHHHcCChh---------
Confidence 0000 122345666654433222 455555543211 111 566888999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh----------------chhccCCCC----------------CCeEEEEe
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 278 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tiIiiT 278 (347)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999999998 799999984 89999999
Q ss_pred c--hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 279 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAWL-LKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEEE-EETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhc
Confidence 9 567789999975 99999999999888764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=359.59 Aligned_cols=227 Identities=13% Similarity=0.138 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcc---------CCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHH
Q 019048 47 QRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 117 (347)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKS 117 (347)
......|+.++++.++..... ...-|+++||+|+|+.....++ |+|+||+|++|+.+|||||||||||
T Consensus 382 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKS 458 (1321)
T 4f4c_A 382 AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKS 458 (1321)
T ss_dssp HHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHH
T ss_pred HHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHH
Confidence 344566888888765442111 1124999999999975432344 6779999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhh
Q 019048 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 197 (347)
Q Consensus 118 TLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~ 197 (347)
||+++|.|+++ |++|+|.+||.++. .+.....+...++|.|++.++..++.+|+.+|..
T Consensus 459 Tll~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~- 517 (1321)
T 4f4c_A 459 TIISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENISLGKE- 517 (1321)
T ss_dssp HHHHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-
T ss_pred HHHHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHHhhhcc-
Confidence 99999999999 99999999999987 2344444555555666666666667777766542
Q ss_pred ccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCC
Q 019048 198 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 268 (347)
Q Consensus 198 ~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 268 (347)
...++++.++++.+++++.+..+|+++.++|.+++ .+||||||||++||||+ |||||+|
T Consensus 518 ------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaL 585 (1321)
T 4f4c_A 518 ------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG------TQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585 (1321)
T ss_dssp ------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS------CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred ------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCC------CCCCHHHHHHHHHHHHHccCCCEEEEecccccC
Confidence 11246788899999999888889999999998874 48999999999999999 9999999
Q ss_pred CC---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 269 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 269 d~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
|. |+|+|+||| -...+.||+|++ |++|+|++.|+|++++..
T Consensus 586 D~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iiv-l~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 586 DAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIIS-CKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp CTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEE-EETTEEEEEECHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEE-eeCCeeeccCCHHHHHHh
Confidence 94 899999999 466788999975 999999999999999875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=296.69 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=145.2
Q ss_pred cEEEeeeEEEeCCC-ceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~-~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+++|+.+ ....+ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~~- 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVRK- 69 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGGG-
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECcc-
Confidence 58999999999631 00234 677999999 9999999999999999999999987 478999999998741
Q ss_pred ccccccccCCCccc-eeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCC-ccccccc
Q 019048 150 YFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~-~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~~~~~~~ 227 (347)
... ++.++ |++|+... ...+.+|+.+. .... . ...+++.++++.+++. +
T Consensus 70 -----~~~-~~~i~~~v~Q~~~l-~~tv~enl~~~-----------~~~~-~----~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 70 -----IRN-YIRYSTNLPEAYEI-GVTVNDIVYLY-----------EELK-G----LDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp -----CSC-CTTEEECCGGGSCT-TSBHHHHHHHH-----------HHHT-C----CCHHHHHHHHHHTTCCGG------
T ss_pred -----hHH-hhheEEEeCCCCcc-CCcHHHHHHHh-----------hhhc-c----hHHHHHHHHHHHcCCChh------
Confidence 111 34566 77666543 22255554432 2111 1 1135678899999998 6
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~ 283 (347)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45889999999999999999999 999999984 239999999 5677
Q ss_pred hccc-EEEEEeeCCeEeecCCcccccC
Q 019048 284 SLTD-RARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 284 ~~aD-ri~v~l~~G~iv~~g~~~~l~~ 309 (347)
.+|| ++++ |++|++++.|++++++.
T Consensus 190 ~~~d~~i~~-l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 190 LYKEYKAYF-LVGNRLQGPISVSELLE 215 (263)
T ss_dssp GCTTSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HhcCceEEE-EECCEEEEecCHHHHHh
Confidence 8999 9975 99999999999988874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=288.79 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=139.9
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++||+++|+. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 468999999999964 34 777999999999999999999999999999999999 99999999998863
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. .++.++|++|+...+..+ +.+|+.+.. ..... . .. ++++.++++.+|+++
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~~-----------~~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAVA-----------SLYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHHH-----------HHTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHHH-----------HhcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 134567888876655443 566654421 11111 1 12 456788999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~ 280 (347)
. ++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 778999999999999999999 999999985 789999999 5
Q ss_pred HHHhcccEEEEEeeCCeE
Q 019048 281 DLLSLTDRARIRTYLGEL 298 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~i 298 (347)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 788899999 4 777765
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=282.36 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=135.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4699999999996322 234 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++|++|+...+...+.+| +.++.. ... .++.++++.+++.+.+...++
T Consensus 71 ------------i~~v~q~~~~~~~tv~en-----------l~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~- 118 (229)
T 2pze_A 71 ------------ISFCSQFSWIMPGTIKEN-----------IIFGVS----YDE----YRYRSVIKACQLEEDISKFAE- 118 (229)
T ss_dssp ------------EEEECSSCCCCSBCHHHH-----------HHTTSC----CCH----HHHHHHHHHTTCHHHHTTSTT-
T ss_pred ------------EEEEecCCcccCCCHHHH-----------hhccCC----cCh----HHHHHHHHHhCcHHHHHhCcc-
Confidence 367777765443334444 433221 011 112334444554321100000
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
...+..++.+.+||||||||++||||| ||||++||. ++|||++|| +.+
T Consensus 119 -----~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 119 -----KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp -----GGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred -----cccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 001123455789999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
..||++++ |++|++++.|++++++..
T Consensus 194 -~~~d~v~~-l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 -KKADKILI-LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp -HHCSEEEE-EETTEEEEEECHHHHHTC
T ss_pred -HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 45999975 999999999999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=282.93 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=133.2
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++|+.+. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3699999999996321 234 777999999999999999999999999999999999 99999999982
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH---HHHHCCCCcccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 226 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~---~l~~~gl~~~~~~~ 226 (347)
++|++|+...+...+.+| +.++... ..... +++.+ +++.+++.+.-
T Consensus 68 ------------i~~v~Q~~~~~~~tv~en-----------l~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLREN-----------ILFGCQL----EEPYY-RSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHHHH-----------HHTTSCC----CTTHH-HHHHHHTTCHHHHTTSTTG---
T ss_pred ------------EEEEcCCCcCCCcCHHHH-----------hhCcccc----CHHHH-HHHHHHHhhHHHHHhcccc---
Confidence 367777754322224444 4332210 11111 11111 12223322100
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC------------------CCeEEEEec
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tiIiiTH 279 (347)
..+.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00124678899999999999999999 999999652 689999999
Q ss_pred --hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 280 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 280 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
+.+ ..||++++ |++|++++.|++++++..
T Consensus 188 ~~~~~-~~~d~v~~-l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYL-PQVDVIIV-MSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTG-GGSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred ChHHH-HhCCEEEE-EeCCEEEEeCCHHHHhhc
Confidence 344 57999975 999999999999887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=340.12 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhhhhhhhc---------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
.....|+.++++..++... .....|+++||+|+|+.+...++ |+|+||+|++||++||||||||||||
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHH
Confidence 3455677777765543211 01235999999999975332234 67799999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++. .+...+.+...++|+|++.++..++.+|+.++..
T Consensus 432 l~~ll~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 432 TVQLMQRLYD-----PLDGMVSIDGQDIR---------------TINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-- 489 (1284)
T ss_dssp HHHHTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--
T ss_pred HHHHHhCCCC-----CCCeEEEECCEEHH---------------hCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--
Confidence 9999999999 99999999999986 1222233333444455554444456666665532
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
... .+++.++++..++.+.+...++++.+.|++ .+.+||||||||++||||| ||||++||
T Consensus 490 -~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~------~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 490 -DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGE------RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp -SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSS------SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred -CCC----HHHHHHHHHHhCcHHHHHhccccccccccC------CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 111 234566677777766555555666555544 4679999999999999999 99999998
Q ss_pred C---------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. |+|+|+||| -.....||+|++ |++|++++.|++++++..
T Consensus 559 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v-l~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG-FDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEE-CSSSCCCCEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 3 899999999 334455999975 999999999999998765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=334.87 Aligned_cols=228 Identities=11% Similarity=0.105 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhhhhhhc---------cCCCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHH
Q 019048 48 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 118 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKST 118 (347)
.....|+.++++..++... .....|+++||+|+|+.+....+ |+|+||+|++||++||+|||||||||
T Consensus 998 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKST 1074 (1284)
T 3g5u_A 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKST 1074 (1284)
T ss_dssp HHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHH
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHH
Confidence 3455677777665443211 01235999999999975432345 55599999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc
Q 019048 119 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 198 (347)
Q Consensus 119 Llk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~ 198 (347)
|+++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++....
T Consensus 1075 l~~~l~g~~~-----p~~G~I~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~-----------~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1075 VVQLLERFYD-----PMAGSVFLDGKEIKQLN---V-QWLRAQLGIVSQEPILFD-----------CSIAENIAYGDNSR 1134 (1284)
T ss_dssp HHHHHTTSSC-----CSEEEEESSSSCTTSSC---H-HHHTTSCEEEESSCCCCS-----------SBHHHHHTCCCSSC
T ss_pred HHHHHhcCcC-----CCCCEEEECCEEcccCC---H-HHHHhceEEECCCCcccc-----------ccHHHHHhccCCCC
Confidence 9999999999 99999999999986211 0 112445666666654443 34555655443210
Q ss_pred cCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC
Q 019048 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 269 (347)
Q Consensus 199 ~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 269 (347)
... .+++.++++..++.+.+...++++.+.|++. +.+||||||||++||||| ||||++||
T Consensus 1135 -~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~------G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD 1203 (1284)
T 3g5u_A 1135 -VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK------GTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203 (1284)
T ss_dssp -CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT------SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCC
T ss_pred -CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC------CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111 2345566777787766666677777777654 568999999999999999 99999998
Q ss_pred C---------------CCeEEEEech-HHHhcccEEEEEeeCCeEeecCCcccccCC
Q 019048 270 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 270 ~---------------g~tiIiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
. |+|+|+|||+ .....||||++ |++|++++.|++++++..
T Consensus 1204 ~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~v-l~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV-IQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEE-EETBEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHHhC
Confidence 3 8999999992 33466999975 999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=276.92 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=119.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++|+++||++.|. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 39 ~~l~~~~l~~~~~-----~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~----- 100 (290)
T 2bbs_A 39 DSLSFSNFSLLGT-----PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 100 (290)
T ss_dssp -----------CC-----CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC-----
T ss_pred ceEEEEEEEEcCc-----eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE-----
Confidence 5799999998642 23 777999999999999999999999999999999999 99999999872
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
++|++|+...+...+.+| +. +.. ... ..+.++++.+++...+...++.
T Consensus 101 ------------i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~~----~~~~~~~~~~~l~~~l~~~~~~ 148 (290)
T 2bbs_A 101 ------------ISFCSQNSWIMPGTIKEN-----------II-GVS----YDE----YRYRSVIKACQLEEDISKFAEK 148 (290)
T ss_dssp ------------EEEECSSCCCCSSBHHHH-----------HH-TTC----CCH----HHHHHHHHHTTCHHHHHTSTTG
T ss_pred ------------EEEEeCCCccCcccHHHH-----------hh-Ccc----cch----HHHHHHHHHhChHHHHHhcccc
Confidence 367777654443234444 33 211 011 1223344555554311000000
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..+.+++.+.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 149 ------~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 149 ------DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222 (290)
T ss_dssp ------GGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ------ccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 00112445689999999999999999 999999763 789999999 344
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
..||++++ |++|++++.|++++++.
T Consensus 223 -~~~d~i~~-l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 223 -KKADKILI-LHEGSSYFYGTFSELQN 247 (290)
T ss_dssp -HHSSEEEE-EETTEEEEEECHHHHHH
T ss_pred -HcCCEEEE-EECCeEEEeCCHHHHhh
Confidence 46999975 99999999999988764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=276.57 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=140.3
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~--~~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS--FK-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSS--CE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecc--eE-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 357999999999964 13 677999999999999999999999999999999999 999998762
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..++|++|+......+ |.++...... . .....+++.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~----------~------~~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDS----------S------KLNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H------HHHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhc----------c------CCCHHHHHHHHHHHcCCch------
Confidence 1347888876443322 4443322100 0 0011345778899999986
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 789999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 533 ~~~~~~adrv~v-l~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIV-FEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EcCCcceEEecCCHHHHHh
Confidence 578889999975 886 78888899887754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=273.41 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=139.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--FR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--EE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 357999999999964 22 677999999999999999999999999999999999 999999751
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
..++|++|+......+ |.++...... . . ....+.+.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~----------~-~-----~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDA----------S-K-----LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHH----------H-H-----HTCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhc----------c-C-----CCHHHHHHHHHHHcCChh------
Confidence 1347888876443222 4333221100 0 0 001245677899999976
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 889999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~v-l~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMV-FEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EeCCcceEeecCCHHHHHh
Confidence 578889999975 886 78888899887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=274.14 Aligned_cols=176 Identities=10% Similarity=0.064 Sum_probs=134.1
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++++++|+++.|++ .. |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 357999999999964 23 666899999999999999999999999999999999 9999999876543
Q ss_pred CccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~-~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
++.+|+..... ..|.+++... .. .... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~-----------~~--~~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENA-----------SK--DALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHH-----------CS--STTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHh-----------hh--hccc--hhHHHHHHHHHHcCCHH------
Confidence 45665543322 2255544321 00 0000 11234677888899876
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
.+++++.+|||||||||+||||| ||||++||. |+|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999983 899999999
Q ss_pred hHHHhcccEEEEEeeC--CeEeecCCcc
Q 019048 280 GDLLSLTDRARIRTYL--GELLGIPPAK 305 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 305 (347)
+.+..+||||++ |++ |.....+++.
T Consensus 447 ~~~~~~aDri~v-l~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRIIV-FKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCE
T ss_pred HHHHHhCCEEEE-EeCCcceeccCCChH
Confidence 578899999975 886 4444455543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-30 Score=277.02 Aligned_cols=209 Identities=16% Similarity=0.202 Sum_probs=131.7
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.++|+++|++|+|+++. ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 35899999999996421 123 777999999999999999999999999999999999 99999999863 111
Q ss_pred Cccccccc------------------c---------CCCccceeecc----------------------------ccccc
Q 019048 149 TYFLQEYT------------------I---------PRGSNSFSLYD----------------------------TRSLS 173 (347)
Q Consensus 149 ~~~~~~~~------------------~---------~r~~~~~~~~~----------------------------~~~~~ 173 (347)
++..|... + .+....+...+ ...+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 11111100 0 00000000000 00000
Q ss_pred -cc-hhhhhHhhH-----HHHHhhhhhhhh------------------hccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 174 -DD-ASDNINMIK-----LWIMEGVRHGEL------------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 174 -~~-v~qn~~~~~-----~~v~~~v~~~~~------------------~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
.+ +.+|+.+.. .++.+|+.++.. ......+...++++.++++.+||....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00 111111100 000011000000 000000111245678899999997521
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHh
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 284 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~ 284 (347)
..++++.+||||||||++||||| ||||++||. +.|||+||| +++..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999984 789999999 57788
Q ss_pred cccEEEEEeeCCeEeecCC
Q 019048 285 LTDRARIRTYLGELLGIPP 303 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~ 303 (347)
+||++++ |++|+++..|+
T Consensus 964 l~DrViv-L~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWA-VKDGRMTPSGH 981 (986)
T ss_dssp TCCEEEC-CBTTBCCC---
T ss_pred hCCEEEE-EECCEEEEeCC
Confidence 9999975 99999998775
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-30 Score=265.40 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=132.2
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCC-----eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~G-----e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
+++++.|+... .+ ++++||++.+| |+++|+||||||||||+|+|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~~--~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSLK--KT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCEE--EE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCcc--cc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 67888886432 34 55599999999 7899999999999999999999999 999862 11
Q ss_pred ccccccccCCCccceeeccccccc-cchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~-~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
+..+++.+|+..... ..+.++.. .... ... ...+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~~---~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQF---LNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--STT---TSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--ccc---ccHHHHHHHHHHcCChh-------
Confidence 123467777644322 22444321 1100 000 11235667899999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
++++++.+|||||||||+||||| ||||++||. |+|||+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999 999999983 899999999 5
Q ss_pred HHHhcccEEEEEeeC--CeEeecCCcccccC
Q 019048 281 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 309 (347)
Q Consensus 281 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 309 (347)
++..+|||+++ |++ |+++..|+|++++.
T Consensus 530 ~~~~~aDrviv-l~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 530 MATYLADKVIV-FEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHHHHCSEEEE-CEEETTTEEECCCCEEHHH
T ss_pred HHHHhCCEEEE-EeCCCCeEEecCChHHHhh
Confidence 78899999975 986 89999999988865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-31 Score=271.09 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=123.5
Q ss_pred CcEEE--------eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE--
Q 019048 70 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 139 (347)
Q Consensus 70 ~~l~i--------~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-- 139 (347)
.+|++ +||+++|+... .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35888 99999997532 24 66699 999999999999999999999999999999 999985
Q ss_pred -------EECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHH
Q 019048 140 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212 (347)
Q Consensus 140 -------~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~ 212 (347)
.++|.++.. ........+..+++.+|... +.+.++..++.+++... ...+++.+
T Consensus 151 ~~~~~~~~~~G~~~~~--~~~~~~~~~~~i~~~~q~~~-------~~~~~~~~tv~e~l~~~----------~~~~~~~~ 211 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN--YFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKV----------DEVGKFEE 211 (607)
T ss_dssp CHHHHHHHTTTSTHHH--HHHHHHHTSCCCEEECSCGG-------GGGGTCCSBHHHHHHHT----------CCSSCHHH
T ss_pred ccchhhheeCCEehhh--hhhhhhhhhcceEEeechhh-------hchhhccccHHHHhhhh----------HHHHHHHH
Confidence 233432210 00000000111223333211 11111001233333210 01234678
Q ss_pred HHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------
Q 019048 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 270 (347)
Q Consensus 213 ~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 270 (347)
+++.+||.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 212 ~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 212 VVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999987 46899999999999999999999 999999983
Q ss_pred ---CCeEEEEec--hHHHhcccEEEEEeeCC
Q 019048 271 ---DKPVVVVTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 271 ---g~tiIiiTH--~~~~~~aDri~v~l~~G 296 (347)
|+|||+||| +.+..+|||+++ |+++
T Consensus 275 ~~~g~tvIivsHdl~~~~~~adri~v-l~~~ 304 (607)
T 3bk7_A 275 ANEGKAVLVVEHDLAVLDYLSDVIHV-VYGE 304 (607)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEEE-EESC
T ss_pred HhcCCEEEEEecChHHHHhhCCEEEE-ECCC
Confidence 899999999 577889999965 8754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=266.30 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=119.5
Q ss_pred EEE-eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE---------EE
Q 019048 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (347)
Q Consensus 72 l~i-~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I---------~~ 141 (347)
.++ +||+++|+... .+ |+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 556 69999997532 24 66699 999999999999999999999999999999 999984 23
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 142 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 142 ~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+|.++.. ........+..+++.+|...... .+...++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~-------~~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIP-------KAVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSG-------GGCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcc-------hhhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 3432210 00000001112233333221111 0000012222221 011235678999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
..++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45889999999999999999999 999999983 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCC
Q 019048 277 VTH--GDLLSLTDRARIRTYLG 296 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G 296 (347)
||| +.+..+|||+++ |++|
T Consensus 214 vsHd~~~~~~~~dri~v-l~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHV-VYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEEE-EEEE
T ss_pred EeCCHHHHHHhCCEEEE-EcCc
Confidence 999 578889999975 8754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-29 Score=262.60 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=110.3
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHH---------------------HHHhhcccCCCCCCCC-------cEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASER-------AQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLl---------------------k~L~gl~~~~~~~p~~-------G~I~~~g~ 144 (347)
|+||||+|++||++||+||||||||||+ +++.++.. |+. |.|.+++.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 5669999999999999999999999998 88888888 774 45555554
Q ss_pred eCCCCccccccccCCCccceeecccccc------ccchh--hhhHhhH-HHHHhhhhhhhhh-ccCCChHHHH------H
Q 019048 145 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDAS--DNINMIK-LWIMEGVRHGELV-IRRSDSSSLR------N 208 (347)
Q Consensus 145 ~i~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~v~--qn~~~~~-~~v~~~v~~~~~~-~~~~~~~~~~------~ 208 (347)
+.. ...++.+++++|....+ .++++ ++...+. .++.+|+.+.... .......... .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 332 11122334444332211 01111 1111111 1344444331100 0000000000 1
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC-------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 270 (347)
....+++.+||.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 14789999999999999999998 999999984
Q ss_pred ---------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ---------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|+|||+|||+ .....||++++ | ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~-l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEEE-ECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE-ecccccccCCEEEEecCHHHHhcCch
Confidence 8999999993 34556999975 8 8999999999999987654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=250.59 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456677888999652 24789999999999999999998 999999983
Q ss_pred -----------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHHH
Q 019048 271 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 322 (347)
Q Consensus 271 -----------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 322 (347)
|+|||+|||+ .....||||++ | ++|++++.|+++++...+. .++..++..
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~-l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~ 652 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLKP 652 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE-ecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHHH
Confidence 8999999993 44567999975 9 8999999999999976543 455555543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-28 Score=255.30 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=114.3
Q ss_pred eeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccccc
Q 019048 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 155 (347)
Q Consensus 76 nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~ 155 (347)
|++++|+.+... |++++ ++++||++||+||||||||||+|+|+|+++ |++|+|..... . ....
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~--~----~~~~ 144 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPE--W----QEII 144 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSC--H----HHHH
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccc--h----hhhh
Confidence 568888654333 44466 689999999999999999999999999999 99998731110 0 0000
Q ss_pred ccCCCccceeecccc-----cccc--chhhhhHhhHH-------HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 156 TIPRGSNSFSLYDTR-----SLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 156 ~~~r~~~~~~~~~~~-----~~~~--~v~qn~~~~~~-------~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
...+ +..++... .... +..+.....+. ++.+.+.. . . ....+++.++++.+||..
T Consensus 145 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~-~---~~~~~~~~~~l~~~gl~~ 213 (608)
T 3j16_B 145 KYFR---GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R-M---EKSPEDVKRYIKILQLEN 213 (608)
T ss_dssp HHTT---TSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H-C---CSCHHHHHHHHHHHTCTG
T ss_pred heec---ChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h-h---hhHHHHHHHHHHHcCCcc
Confidence 0000 01111000 0000 00011110000 11111110 0 0 112356888999999987
Q ss_pred ccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEE
Q 019048 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 276 (347)
Q Consensus 222 ~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIi 276 (347)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 214 -----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 -----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp -----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred -----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999 999999873 899999
Q ss_pred Eec--hHHHhcccEEEEEeeCCe
Q 019048 277 VTH--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 277 iTH--~~~~~~aDri~v~l~~G~ 297 (347)
||| +.+..+|||+++ |++|.
T Consensus 277 vtHdl~~~~~~~drv~v-l~~~~ 298 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCI-IYGVP 298 (608)
T ss_dssp ECSCHHHHHHHCSEEEE-EESCT
T ss_pred EeCCHHHHHHhCCEEEE-EeCCc
Confidence 999 578899999975 98765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=252.62 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=126.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|...|++++|++ ..+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+..
T Consensus 435 ~L~~~~ls~~yg~---~~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~--- 492 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KIL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQ--- 492 (986)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCT---
T ss_pred eeEEeeEEEEECC---EEe---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCccc---
Confidence 4777799999974 234 677999999999999999999999999999995 111 222111
Q ss_pred cccccccCCCccceeecccc-ccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~-~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ...++|+.|+.. .+..+ ++.+++.+ . ... . ++++.++++.+|+...
T Consensus 493 ---~----~~~~~~v~q~~~~~~~~l----------tv~e~l~~--~-~~~--~---~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 493 ---E----ECRTVYVEHDIDGTHSDT----------SVLDFVFE--S-GVG--T---KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp ---T----TSCEEETTCCCCCCCTTS----------BHHHHHHT--T-CSS--C---HHHHHHHHHHTTCCHH-------
T ss_pred ---c----ceeEEEEcccccccccCC----------cHHHHHHH--h-hcC--H---HHHHHHHHHHcCCChh-------
Confidence 0 001234444321 11111 23344432 1 111 1 5678889999999632
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-------------CCeEEEEec--hHHHhc
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 285 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tiIiiTH--~~~~~~ 285 (347)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 45889999999999999999999 999999983 899999999 578899
Q ss_pred ccEEEEEeeCCeEe-ecCCcccccC
Q 019048 286 TDRARIRTYLGELL-GIPPAKQIFD 309 (347)
Q Consensus 286 aDri~v~l~~G~iv-~~g~~~~l~~ 309 (347)
||++++ |++|+++ ..|++++++.
T Consensus 612 adrii~-L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYIIN-YEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEE-EETTEEEEEESCHHHHHH
T ss_pred CCEEEE-EECCeeecCCCCHHHHHh
Confidence 999975 9999997 5788877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-28 Score=248.28 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=115.5
Q ss_pred eeeEEEeCCCceeeecCCceeeEEE-ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-----------EEC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~-i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-----------~~~ 142 (347)
++.+.+|+.+. ++-..|. +++||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997654 3335554 45899999999999999999999999999 999988 455
Q ss_pred CEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 143 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 143 g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
|.++.. ..+........+...+ .++.+.+.++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN--YFKELYSNELKIVHKI-------QYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH--HHHHHHTTCCCEEEEC-------SCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH--HHHHHhhcccchhhcc-------chhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 544320 0000000000000111 1111111111001111111 0111234667899999987
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEe
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 278 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiT 278 (347)
..++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999873 89999999
Q ss_pred c--hHHHhcccEEEEEeeCCe
Q 019048 279 H--GDLLSLTDRARIRTYLGE 297 (347)
Q Consensus 279 H--~~~~~~aDri~v~l~~G~ 297 (347)
| +.+..+||++++ |++|.
T Consensus 195 Hdl~~~~~~~d~i~v-l~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHI-IYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEEE-EEEET
T ss_pred eChHHHHhhCCEEEE-ecCCc
Confidence 9 678889999975 87653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-26 Score=242.31 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=81.4
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
.++.++|+.+||... .+++++.+||||||||++||||| ||||+|||.
T Consensus 783 ~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~ 846 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846 (916)
T ss_dssp HHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 456788999999752 24788999999999999999998 999999873
Q ss_pred -----------CCeEEEEech-HHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 -----------g~tiIiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+|||+ .+...||+|++ | ++|+|++.|++++++..+ ++++..++.
T Consensus 847 L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIiv-Lgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 847 LVEVLHRLVDRGNTVIVIEHNLDVIKNADHIID-LGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-ecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 8999999993 44566999975 9 899999999999999876 577777764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-25 Score=235.28 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=79.9
Q ss_pred HHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC-----
Q 019048 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 270 (347)
Q Consensus 208 ~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 270 (347)
+++.++++.+||.... +++++.+||||||||++||++| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~~----------------l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYLR----------------LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTSB----------------TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccc----------------ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 4678899999997621 3788999999999999999999 999999873
Q ss_pred -----------CCeEEEEec--hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 -----------g~tiIiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| +.+ ..||+|++ | ++|++++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~-L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD-IGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 78999975 9 7999999999999988765 45566553
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-28 Score=247.06 Aligned_cols=173 Identities=10% Similarity=-0.021 Sum_probs=128.8
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-E-EEECCEeC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 146 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~-I~~~g~~i 146 (347)
.++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 46788999988884 2 899999999999999999999999999999999 9999 8 99987 11
Q ss_pred CCCccccccccCCCccceeeccccccc---cc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 147 DGTYFLQEYTIPRGSNSFSLYDTRSLS---DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 147 ~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
++.+++++|+...+. .+ +.+|. ++........ ..+++.++++.+|+..
T Consensus 178 ------------~~~i~~vpq~~~l~~~~~~~tv~eni------------~~~~~~~~~~---~~~~~~~ll~~~gl~~- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPISDILDAQLPT------------WGQSLTSGAT---LLHNKQPMVKNFGLER- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECCSCCCTTCTT------------CSCBCBSSCC---SSCCBCCEECCCCSSS-
T ss_pred ------------cCCeeeeccchhhcccccccchhhhh------------cccccccCcc---hHHHHHHHHHHhCCCc-
Confidence 234567777654321 11 23332 2211100100 1123445677788876
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHH--h-------------ch-hccCCCC------------CCeE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPV 274 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArA--L-------------DE-Pts~Ld~------------g~ti 274 (347)
..+ +.+||||||||++|||| | || ||++||. +.|+
T Consensus 230 ----------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tv 291 (460)
T 2npi_A 230 ----------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNI 291 (460)
T ss_dssp ----------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCE
T ss_pred ----------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCE
Confidence 333 88999999999999999 4 99 9999974 8899
Q ss_pred EEEec--h------HHHhcccE-----EEEEee-CCeEeecCCcccc
Q 019048 275 VVVTH--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 307 (347)
Q Consensus 275 IiiTH--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 307 (347)
|+||| + .+..+||+ +++ |+ +|+++ .|+++++
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~-l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFF-IPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEE-ECCCTTCC-CCCHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEE-EeCCCcEE-ECCHHHH
Confidence 99999 5 55689999 965 98 99999 8887654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=229.76 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=78.0
Q ss_pred HHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh------------chhccCCCC------
Q 019048 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 270 (347)
Q Consensus 209 ~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 270 (347)
++.++++.+||... .+++++.+||||||||++||++| ||||+|||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 45678999999762 24788999999999999999998 999999873
Q ss_pred ----------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 271 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 271 ----------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
|.|||+||| -.....||++++ | ++|++++.|++++++..+. .++..++.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-ECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-EcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 899999999 234468999975 9 7899999999999987654 45555543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-23 Score=201.63 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHh-----------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEEe----eC
Q 019048 247 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 295 (347)
Q Consensus 247 LSgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~l----~~ 295 (347)
||||||||++||++| ||||++||. |.|||+||| ..+..+||++++ | ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~-l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK-VEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE-EEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE-EEEeccC
Confidence 699999999999998 999999873 799999999 455678999975 9 89
Q ss_pred CeEeec
Q 019048 296 GELLGI 301 (347)
Q Consensus 296 G~iv~~ 301 (347)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-25 Score=209.03 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhhhhhhccC------CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHH
Q 019048 50 RDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~------~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L 123 (347)
...|+.+++...++..... ..+|+++||+|.|+ . .+ |+++||+|++|++++|+||||||||||+++|
T Consensus 74 a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~--~v---L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 74 QALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--I--NA---LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp HHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--H--HH---HHHHHHTCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--h--hh---hccceEEecCCCEEEEECCCCCcHHHHHHHH
Confidence 3446666665543321111 12489999999996 2 34 6779999999999999999999999999999
Q ss_pred hhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCCh
Q 019048 124 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 203 (347)
Q Consensus 124 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~ 203 (347)
+|++ +|+|.. ++.|+...+.+.+.+ +|+.++.. ..
T Consensus 147 ~gl~--------~G~I~~----------------------~v~q~~~lf~~ti~~----------~ni~~~~~----~~- 181 (305)
T 2v9p_A 147 IHFL--------GGSVLS----------------------FANHKSHFWLASLAD----------TRAALVDD----AT- 181 (305)
T ss_dssp HHHH--------TCEEEC----------------------GGGTTSGGGGGGGTT----------CSCEEEEE----EC-
T ss_pred hhhc--------CceEEE----------------------EecCccccccccHHH----------HhhccCcc----cc-
Confidence 9998 388843 222222222111111 13332211 01
Q ss_pred HHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh--chh---ccCCCC--CCeEEE
Q 019048 204 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFRD--DKPVVV 276 (347)
Q Consensus 204 ~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL--DEP---ts~Ld~--g~tiIi 276 (347)
. .+.+.++.+ |+. .++ +..|||||||| |||| +-| |++||. ...+..
T Consensus 182 ~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ 234 (305)
T 2v9p_A 182 H----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLY 234 (305)
T ss_dssp H----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGG
T ss_pred H----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHH
Confidence 1 233445543 433 123 77999999999 9998 555 999994 223344
Q ss_pred Eec-hHHHhcccEEEEEeeCCeEeecCCcccc
Q 019048 277 VTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 277 iTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 307 (347)
+|| ..+...||+| + |++|++++.|+++++
T Consensus 235 ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 LHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp GTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 699 4566789999 7 999999999999876
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=176.65 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=48.1
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEE-
Q 019048 240 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA- 289 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri- 289 (347)
.+..+.+||+|||||++||+|| ||||++||. +.|+|++|| ..+..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~ 292 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH 292 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEE
Confidence 4567789999999999999975 999999974 789999999 5677889986
Q ss_pred EEEeeCCeE
Q 019048 290 RIRTYLGEL 298 (347)
Q Consensus 290 ~v~l~~G~i 298 (347)
.++|.+|..
T Consensus 293 ~v~~~~g~s 301 (322)
T 1e69_A 293 GVTMVNGVS 301 (322)
T ss_dssp EEEESSSCE
T ss_pred EEEEeCCEE
Confidence 223777743
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-20 Score=161.96 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.0
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++||+|++|++++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-22 Score=198.63 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=121.1
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE---eC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 146 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~---~i 146 (347)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 568999999999643 345 5669 9999999999999999999999999999999 99999999997 33
Q ss_pred CCCccccc---cccCCCccceeeccccccccchhhhhHhhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcc
Q 019048 147 DGTYFLQE---YTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (347)
Q Consensus 147 ~~~~~~~~---~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~ 222 (347)
.. .... ....++.+++++|+ +...+. .++.+++.+... ....-+ .
T Consensus 199 ~~--~~~~~~~~~~l~r~i~~v~q~----------~~~~~~~~~v~~~~~~~ae----------------~~~~~~--~- 247 (438)
T 2dpy_A 199 KD--FIENILGPDGRARSVVIAAPA----------DVSPLLRMQGAAYATRIAE----------------DFRDRG--Q- 247 (438)
T ss_dssp HH--HHHTTTHHHHHHTEEEEEECT----------TSCHHHHHHHHHHHHHHHH----------------HHHTTT--C-
T ss_pred HH--HHHhhccccccCceEEEEECC----------CCCHHHHHHHHHHHHHHHH----------------HHHhCC--C-
Confidence 20 0000 00011223344432 111222 244444432111 111101 1
Q ss_pred cccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHhchh--ccCCCC--------------------CC-----eEE
Q 019048 223 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVV 275 (347)
Q Consensus 223 ~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArALDEP--ts~Ld~--------------------g~-----tiI 275 (347)
+ +..++|. ...||+|| ||++|| +.|| |++||. |. ||+
T Consensus 248 -----~-v~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVl 311 (438)
T 2dpy_A 248 -----H-VLLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVL 311 (438)
T ss_dssp -----E-EEEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEE
T ss_pred -----C-HHHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEE
Confidence 1 1122232 44689999 999999 6566 788653 32 899
Q ss_pred EEechHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 276 VVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 276 iiTH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
++||+.-..+||++++ |.+|+++..+++.++...|
T Consensus 312 v~tHdl~~~iad~v~~-l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 312 TEGDDQQDPIADSARA-ILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSSSCSCCHHHHHHHH-HSSEEEEECHHHHHTTCSS
T ss_pred EeCCCccchhhceEEE-EeCcEEEEeCCHHHccCCC
Confidence 9999533788999965 9999999999998887654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-19 Score=172.57 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=51.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHh---------------chhccCCCC----------------CCeEEEEec-hHHHhcccE
Q 019048 241 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 288 (347)
Q Consensus 241 ~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDr 288 (347)
++++.+||||||||++||+|| ||||++||+ |.|||+||| ......||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 678899999999999998886 999999984 799999999 344778999
Q ss_pred EEEEeeCCeEee
Q 019048 289 ARIRTYLGELLG 300 (347)
Q Consensus 289 i~v~l~~G~iv~ 300 (347)
+++ |++|++++
T Consensus 354 ~~~-l~~G~i~~ 364 (365)
T 3qf7_A 354 KLR-ITGGVVVN 364 (365)
T ss_dssp EEE-EETTEEC-
T ss_pred EEE-EECCEEEe
Confidence 965 99999975
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-20 Score=177.79 Aligned_cols=157 Identities=11% Similarity=0.092 Sum_probs=104.5
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccc-ccc-CCCccceeecccccc
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE-YTI-PRGSNSFSLYDTRSL 172 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~-~~~-~r~~~~~~~~~~~~~ 172 (347)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++........ ... .+..+++++
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~------ 160 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV------ 160 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC------
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE------
Confidence 4899999999999999999999999999999999 999999999988642100000 000 011234444
Q ss_pred ccchhhhhH-hhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~v~qn~~-~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
|+.. +.+. ++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 161 -----q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS-- 206 (302)
T 3b9q_A 161 -----AEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 206 (302)
T ss_dssp -----CC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH--
T ss_pred -----ecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH--
Confidence 4333 2222 455555443210 000 12345556654 2356777899
Q ss_pred HHHHHHHHHHh-----------chhccCCCC-----------CCeEEEEec-h----------HHHhcccEEEEEeeCCe
Q 019048 251 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGE 297 (347)
Q Consensus 251 qrQRv~IArAL-----------DEPts~Ld~-----------g~tiIiiTH-~----------~~~~~aDri~v~l~~G~ 297 (347)
+||++||||| | ||++||. |.|+|++|| + .+....+.|. ++..|+
T Consensus 207 -kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~Ge 283 (302)
T 3b9q_A 207 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 283 (302)
T ss_dssp -HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCCC
Confidence 9999999998 9 9999873 899999999 2 2334566785 488887
Q ss_pred Ee
Q 019048 298 LL 299 (347)
Q Consensus 298 iv 299 (347)
.+
T Consensus 284 ~~ 285 (302)
T 3b9q_A 284 AV 285 (302)
T ss_dssp SG
T ss_pred Ch
Confidence 54
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-20 Score=170.02 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
++|++++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-20 Score=185.82 Aligned_cols=139 Identities=13% Similarity=0.059 Sum_probs=99.6
Q ss_pred ceeeEEEecCCe--------------------EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccc
Q 019048 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 152 (347)
Q Consensus 93 L~~isl~i~~Ge--------------------~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 152 (347)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+++.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 666999999999 999999999999999999999999 999999999876530
Q ss_pred cccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 153 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 153 ~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.+++++.. .+..+ +.+++.+. . . +.++.++++.+++.+.
T Consensus 110 ---------~~~v~q~~-~~~~ltv~D~~g~~-----------~----~------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 ---------ERHPYKHP-NIPNVVFWDLPGIG-----------S----T------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ---------CCEEEECS-SCTTEEEEECCCGG-----------G----S------SCCHHHHHHHTTGGGC---------
T ss_pred ---------eEEecccc-ccCCeeehHhhccc-----------c----h------HHHHHHHHHHcCCCcc---------
Confidence 13555542 22222 34444221 0 0 1235678888888651
Q ss_pred eeechhhhhccCCCCCCHH--HHHHHHHHHHh-------------------chhccCCCC--------------------
Q 019048 232 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 270 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgG--qrQRv~IArAL-------------------DEPts~Ld~-------------------- 270 (347)
+..+. ||+| |+||++||+|| ||||++||.
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 9999 99999999998 999999874
Q ss_pred -C----CeEEEEec--h--HHHhcccEEE
Q 019048 271 -D----KPVVVVTH--G--DLLSLTDRAR 290 (347)
Q Consensus 271 -g----~tiIiiTH--~--~~~~~aDri~ 290 (347)
| .+++++|| . .+..+||++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 1 35778888 3 3788888883
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-20 Score=168.85 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~ 57 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSC 57 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecc
Confidence 67799999999999999999999999999999976 4 88998 7654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-19 Score=162.97 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.| .+|++|++++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 555 6999999999999999999999999999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-20 Score=171.46 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccc-hhhhhHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 183 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~ 183 (347)
.++|+||||||||||+|+|+|+.. |++|+|.++|+++.. ...++.+++++|+...+..+ |.+++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 589999999999999999999999 999999999987631 12234567788776555444 56665442
Q ss_pred HHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh--
Q 019048 184 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 261 (347)
Q Consensus 184 ~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-- 261 (347)
...... ...+.+.+++. .. +.+.++.+|||||+||+++|||+
T Consensus 72 -----------~~~~~~----~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 72 -----------DQINNE----NCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBCT----TCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred -----------hhcccH----HHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 111111 11122222222 11 34566779999999999999998
Q ss_pred ----chhccCCCC-----------CCeEEEEec
Q 019048 262 ----NCPYLSFRD-----------DKPVVVVTH 279 (347)
Q Consensus 262 ----DEPts~Ld~-----------g~tiIiiTH 279 (347)
|||+.+|++ ..++|+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999763 577777777
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-19 Score=173.81 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcccccc-cc-CCCccceeecccccc
Q 019048 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY-TI-PRGSNSFSLYDTRSL 172 (347)
Q Consensus 95 ~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~-~~-~r~~~~~~~~~~~~~ 172 (347)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++......... .. .+..+++++|+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~---- 219 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE---- 219 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCS----
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEec----
Confidence 4899999999999999999999999999999999 9999999999886421000000 00 01223444443
Q ss_pred ccchhhhhH-hhH-HHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHH
Q 019048 173 SDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (347)
Q Consensus 173 ~~~v~qn~~-~~~-~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgG 250 (347)
.. +.+ .++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 220 -------~~~~~p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS-- 263 (359)
T 2og2_A 220 -------GDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 263 (359)
T ss_dssp -------SSSCCHHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH--
T ss_pred -------ccccChhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH--
Confidence 32 222 2455555433210 000 01344556554 2356677899
Q ss_pred HHHHHHHHHHh-----------chhccCCCC-----------CCeEEEEec-h----------HHHhcccEEEEEeeCCe
Q 019048 251 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-G----------DLLSLTDRARIRTYLGE 297 (347)
Q Consensus 251 qrQRv~IArAL-----------DEPts~Ld~-----------g~tiIiiTH-~----------~~~~~aDri~v~l~~G~ 297 (347)
+||++||||| | ||++||. |.|+|++|| + .+...+..|. ++..|+
T Consensus 264 -kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge 340 (359)
T 2og2_A 264 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 340 (359)
T ss_dssp -HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCC
Confidence 9999999998 8 9999873 899999999 3 2334566785 488887
Q ss_pred Ee
Q 019048 298 LL 299 (347)
Q Consensus 298 iv 299 (347)
.+
T Consensus 341 ~~ 342 (359)
T 2og2_A 341 AV 342 (359)
T ss_dssp SG
T ss_pred Ch
Confidence 54
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-20 Score=180.77 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=115.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
++++++++++.|+.+ +.+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~tg--~~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~-- 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR-- 110 (347)
T ss_dssp CSTTCCCCCSEECCS--CHH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH--
T ss_pred CCeeecccceecCCC--CEE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH--
Confidence 468999999999743 345 5559 9999999999999999999999999999999 99999999886421
Q ss_pred ccccccccCCCccceeeccc--cccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~--~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.. ... +++ +... .....++.+...... .++.. ....-.+.+.+...+ .
T Consensus 111 -ev--~~~----i~~-~~~~~~~~~v~~~~~~~~~~~----~r~~~----------~~~~~~~ae~~~~~~--~------ 160 (347)
T 2obl_A 111 -EV--NEF----LAL-LPQSTLSKCVLVVTTSDRPAL----ERMKA----------AFTATTIAEYFRDQG--K------ 160 (347)
T ss_dssp -HH--HHH----HTT-SCHHHHTTEEEEEECTTSCHH----HHHHH----------HHHHHHHHHHHHTTT--C------
T ss_pred -HH--HHH----HHh-hhhhhhhceEEEEECCCCCHH----HHHHH----------HHHHHHHHHHHHhcc--c------
Confidence 00 000 000 0000 000001111100000 00000 000000111111111 1
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHhchh-ccCCCC------------------CC-----eEEEEechHHH
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDLL 283 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArALDEP-ts~Ld~------------------g~-----tiIiiTH~~~~ 283 (347)
+ +..++ ..+..||+|| ||+++| +-+.| |+|||+ |. ||+++||+.-.
T Consensus 161 ~-vl~~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 161 N-VLLMM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp E-EEEEE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC
T ss_pred c-HHHHH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC
Confidence 1 11122 3456899999 899999 33556 577642 55 89999995437
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCC
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 312 (347)
.+||++.+ |.+|+++.+++++++...|.
T Consensus 231 ~i~d~v~~-i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEVRS-ILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHHHH-HCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhheEE-eeCcEEEEeCCHHHcCCCCC
Confidence 78999975 99999999999888765553
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-21 Score=193.01 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=52.5
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEE-EecCCeEEEEECCCCChHHHHHHH--HhhcccCCCCCCCCcEEEECCEe
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl-~i~~Ge~~aIvGpnGsGKSTLlk~--L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++.+++.+.++ + +.+ |+++|| .|++|++++|+||||||||||+++ ++|+++ |.+|.|+++|++
T Consensus 11 ~~~~~~~~~~~~~-g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~ 78 (525)
T 1tf7_A 11 NNSEHQAIAKMRT-M--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEE 78 (525)
T ss_dssp ---CCSSCCEECC-C--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred CCccccccccccC-C--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 3566677755443 3 345 666999 999999999999999999999999 789999 899999999876
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=167.20 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++. .|..+||... .+++.+.+|||||+|||+||++| ||||++||+
T Consensus 356 i~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp HHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 444444 5788999752 14889999999999999999999 999999973
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|.|||+|+| -++...||+|++ | ++|+++..|++++++..+.
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~-lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD-VGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE-ECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE-eCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 345678999975 9 7999999999999987654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-18 Score=148.93 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.9
Q ss_pred hccCCCCCCHHHHHHHHHHHH-----h---------ch--hccCCCC-------------CCeEEEEec-----hHHHhc
Q 019048 240 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 285 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IArA-----L---------DE--Pts~Ld~-------------g~tiIiiTH-----~~~~~~ 285 (347)
.++++.+||||||||++||+| + || ||++||. +.|+|++|| +.+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 477888999999999999996 6 99 9999863 677899986 467777
Q ss_pred ccE
Q 019048 286 TDR 288 (347)
Q Consensus 286 aDr 288 (347)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 877
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-20 Score=176.33 Aligned_cols=170 Identities=10% Similarity=-0.084 Sum_probs=109.9
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEE-----------------------ecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~-----------------------i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
..|+++||++.|.. . +++++|. +++|+++||+||||||||||+++|+|+
T Consensus 42 ~~i~~~~v~~~y~p---~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 42 EQIDLLEVEEVYLP---L-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeehhhhhhh---H-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 46899999999942 2 3445553 899999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHH
Q 019048 127 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 206 (347)
Q Consensus 127 ~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~ 206 (347)
++ |+.|. ..+++++|+...+ +.++.+|+.+.. ....+....
T Consensus 114 l~-----~~~G~---------------------~~v~~v~qd~~~~-----------~~t~~e~~~~~~--~~g~~~~~d 154 (312)
T 3aez_A 114 LA-----RWDHH---------------------PRVDLVTTDGFLY-----------PNAELQRRNLMH--RKGFPESYN 154 (312)
T ss_dssp HH-----TSTTC---------------------CCEEEEEGGGGBC-----------CHHHHHHTTCTT--CTTSGGGBC
T ss_pred cc-----ccCCC---------------------CeEEEEecCccCC-----------cccHHHHHHHHH--hcCCChHHH
Confidence 99 87553 0224666654322 223444443211 011222233
Q ss_pred HHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC---C----
Q 019048 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D---- 270 (347)
Q Consensus 207 ~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---~---- 270 (347)
.+.+.++++.++ .. ..+.++..|||||+||+++|+|+ |||++.+| .
T Consensus 155 ~~~~~~~L~~l~-~~-----------------~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~ 216 (312)
T 3aez_A 155 RRALMRFVTSVK-SG-----------------SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSD 216 (312)
T ss_dssp HHHHHHHHHHHH-TT-----------------CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGG
T ss_pred HHHHHHHHHHhC-CC-----------------cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHH
Confidence 455667777776 33 12456779999999999999998 99999975 1
Q ss_pred --CCeEEEEec--h-HHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 271 --DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 271 --g~tiIiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+.+ |+|+| + ...++.+|.. .+.+++ ..+++.++.
T Consensus 217 ~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~ 255 (312)
T 3aez_A 217 LFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFH 255 (312)
T ss_dssp GCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTG
T ss_pred hcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhh
Confidence 444 55666 3 3445667763 255554 234445543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=147.83 Aligned_cols=63 Identities=6% Similarity=-0.089 Sum_probs=54.8
Q ss_pred ccCCC-CCCHHHHHHHHHHHHh------------------chhccCCCC-------------CCeEEEEec-hHHHhccc
Q 019048 241 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 287 (347)
Q Consensus 241 ~~~~~-~LSgGqrQRv~IArAL------------------DEPts~Ld~-------------g~tiIiiTH-~~~~~~aD 287 (347)
++++. .||||||||++||++| ||||++||+ +.|+|++|| +. .||
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~ 335 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAA 335 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCC
Confidence 34555 6999999999999998 999999984 578999999 33 899
Q ss_pred EEEEEeeCCeEeecCCcccc
Q 019048 288 RARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 288 ri~v~l~~G~iv~~g~~~~l 307 (347)
++++ |++|+++..|+++++
T Consensus 336 ~i~~-l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLR-AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEE-EETTEEEECCCTTTS
T ss_pred EEEE-EECCEEEecCCHHHH
Confidence 9965 999999999999877
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-18 Score=163.04 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=44.4
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
++++||++++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~ 207 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESS
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCe
Confidence 566999999999999999999999999999999999 99999999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-16 Score=145.19 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g 143 (347)
|+++++.|++|++++|+||||||||||++.|++.+. +.+| .|.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~ 71 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAM 71 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEe
Confidence 677999999999999999999999999999999998 8878 675544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-16 Score=159.17 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=86.9
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcE--EEECCEeCCCCccccccccCCCccceeecccccccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~--I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 174 (347)
+..|++|++++|+||||||||||+++++|+.. +. |. +++ .+++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~-----------------------~~ee~~~--- 322 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILF-----------------------AYEESRA--- 322 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEE-----------------------ESSSCHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEE-----------------------EEeCCHH---
Confidence 44899999999999999999999999999998 64 53 222 2222110
Q ss_pred chhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHH
Q 019048 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (347)
Q Consensus 175 ~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQR 254 (347)
.+.... . .+ ..+. .+ +...|+.. +.+.+|.+|||||+||
T Consensus 323 ------~l~~~~--~--~~------g~~~-------~~-~~~~g~~~-----------------~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 323 ------QLLRNA--Y--SW------GMDF-------EE-MERQNLLK-----------------IVCAYPESAGLEDHLQ 361 (525)
T ss_dssp ------HHHHHH--H--TT------SCCH-------HH-HHHTTSEE-----------------ECCCCGGGSCHHHHHH
T ss_pred ------HHHHHH--H--Hc------CCCH-------HH-HHhCCCEE-----------------EEEeccccCCHHHHHH
Confidence 000000 0 00 1111 11 22344433 3467788999999999
Q ss_pred HHHHHHh---------chhccCCCC---------------------CCeEEEEechH------------HHhcccEEEEE
Q 019048 255 QIVATTF---------NCPYLSFRD---------------------DKPVVVVTHGD------------LLSLTDRARIR 292 (347)
Q Consensus 255 v~IArAL---------DEPts~Ld~---------------------g~tiIiiTH~~------------~~~~aDri~v~ 292 (347)
+++|+++ | ||++||. |+|+|++||+. +..+||++++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~- 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL- 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE-
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEE-
Confidence 9999998 9 9999762 89999999943 4578999965
Q ss_pred eeCCe
Q 019048 293 TYLGE 297 (347)
Q Consensus 293 l~~G~ 297 (347)
|+.|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-15 Score=165.65 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=41.0
Q ss_pred CcEEEee-----eEEEeCCCceeeecCCceeeEEEecC-------CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~n-----l~~~y~~~~~~~~l~~L~~isl~i~~-------Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++| |++.|..+..+ ++|++|++++ |++++|+||||||||||+|+| |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 5799999 99999433334 7779999987 999999999999999999999 9987
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=160.17 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC--------
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~-------- 270 (347)
..++|..+||... .+++++.+|||||+||++||||| ||||++||+
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 4567888999752 14789999999999999999999 999999874
Q ss_pred --------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCCCCChHHH
Q 019048 271 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 271 --------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
|.|||+||| ..+...||+|++ | ++|++++.|++++++..+....+..+
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii~-lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~ 570 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHIID-IGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEY 570 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEEE-EESSSGGGCSEEEEEECHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-EcCCcccCCCEEEEeechhhhhcCchhcchhhh
Confidence 899999999 344556999975 9 89999999999999887765554443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=135.15 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=45.1
Q ss_pred hhccCCCCCCHHHHHH------HHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhcc
Q 019048 239 VLKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 239 ~~~~~~~~LSgGqrQR------v~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~a 286 (347)
..++++.+|||||||| +++|++| ||||++||. +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 3578899999999995 5666665 999999984 779999999 5677899
Q ss_pred cEEEEEee
Q 019048 287 DRARIRTY 294 (347)
Q Consensus 287 Dri~v~l~ 294 (347)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99965 64
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-17 Score=152.43 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=63.9
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhc-ccCCCCCCCCcEEEECCEeCCCCcccc
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 153 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~~~~ 153 (347)
.||++.|+. ..+ +++++|+| +|+||||||||||+++|.|. +. |++| |.++|.++...
T Consensus 2 ~~l~~~~~~---~~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t---- 59 (301)
T 2qnr_A 2 SNLPNQVHR---KSV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERT---- 59 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC---EEE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCc----
Confidence 478899975 235 55599998 99999999999999999997 66 8889 88888765411
Q ss_pred ccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeee
Q 019048 154 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 232 (347)
Q Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~ 232 (347)
.....+++.++.......+ +++++.+.... .+ ....+..+..+. .
T Consensus 60 ---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~~------------~e~~~~l~~~l~------~----------- 105 (301)
T 2qnr_A 60 ---VQIEASTVEIEERGVKLRLTVVDTPGYGDAI--NC------------RDCFKTIISYID------E----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHHHH------H-----------
T ss_pred ---ceEeeEEEEecCCCcccCcchhhhhhhhhhc--Cc------------HHHHHHHHHHHH------H-----------
Confidence 1112235555543333333 45554432110 00 000000011111 1
Q ss_pred eechhhhhccCCCCCCHHHHHHHHHHHHh-----chhccC-CCC-------------CCeEEEEech
Q 019048 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 280 (347)
Q Consensus 233 vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----DEPts~-Ld~-------------g~tiIiiTH~ 280 (347)
..++++.++|||||||+.+|||+ ||||++ ||+ +.++|+.+|+
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23566778999999999999975 999985 763 5677777884
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=154.33 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHh-----------chhccCCCC------------------CCeEEEEec-hHHHhcccEEEEEeeC
Q 019048 246 DSDVEKQYNQIVATTF-----------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYL 295 (347)
Q Consensus 246 ~LSgGqrQRv~IArAL-----------DEPts~Ld~------------------g~tiIiiTH-~~~~~~aDri~v~l~~ 295 (347)
.+|+++.++..+|+++ ||||+|+|. |+|+|++|| ..+..+||++.. +.+
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~-v~n 799 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT-VNN 799 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT-EEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce-eEe
Confidence 4666666666666665 999999763 799999999 577789999964 999
Q ss_pred CeEeecCCcccc
Q 019048 296 GELLGIPPAKQI 307 (347)
Q Consensus 296 G~iv~~g~~~~l 307 (347)
|++...++.+++
T Consensus 800 g~v~~~~~~~~l 811 (934)
T 3thx_A 800 LHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEETTEE
T ss_pred eEEEEEecCCcE
Confidence 999987777665
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-15 Score=140.21 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 689999999999999999999999999 99999999998875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-15 Score=134.17 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=35.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
+|+++|++|.|+. .+ +++ |++.+|..++|+|+||||||||++.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~--~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA--PD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE--SS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec--CC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999962 23 666 88999999999999999999999999998710000177787654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=143.27 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=46.7
Q ss_pred ccCCCCC-CHHHHHHHHHHHHh-----------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEEE
Q 019048 241 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 292 (347)
Q Consensus 241 ~~~~~~L-SgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v~ 292 (347)
.+++..| ||||+||++||+|| ||||++||. |.|||+||| ..+..+||++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~- 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK- 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEE-
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-
Confidence 3567778 99999999999998 999999985 899999999 345567999975
Q ss_pred eeCCe
Q 019048 293 TYLGE 297 (347)
Q Consensus 293 l~~G~ 297 (347)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-15 Score=136.92 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=50.1
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECCEeCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 147 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g~~i~ 147 (347)
++++++|++. . + |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 5 ~~~l~~l~~~--~---v-----l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP--D---K-----VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGSSCC--T---H-----HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred CCChHHCCCH--H---H-----HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 4566777642 1 3 67798 99999999999999999999999999999 87 999999887653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-16 Score=151.30 Aligned_cols=175 Identities=9% Similarity=0.018 Sum_probs=96.3
Q ss_pred eeeEEEecC--CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC----cEEEEC----CEeCCCCccccccccCCCccc
Q 019048 94 TLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYN----SSVGDGTYFLQEYTIPRGSNS 163 (347)
Q Consensus 94 ~~isl~i~~--Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~----G~I~~~----g~~i~~~~~~~~~~~~r~~~~ 163 (347)
+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |+|+++ |.++.
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~---------------- 217 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA---------------- 217 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS----------------
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc----------------
Confidence 459999999 99999999999999999999999999 888 887764 22210
Q ss_pred eeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHH---------HHHHHHHHHHCCCCcccccccceeeeee
Q 019048 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---------RNRMRCKAHKIGCEPSVIRKVNFVIFVV 234 (347)
Q Consensus 164 ~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~---------~~~i~~~l~~~gl~~~~~~~~~~~~~vv 234 (347)
+...+. ....+++|+..++..++.+|+.+..... ..... ...+..++.....+ +.++
T Consensus 218 ~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------lllL 283 (365)
T 1lw7_A 218 MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDTDF---ITTQAFCIQYEGKAHPFLDSMIKEYPFD----------VTIL 283 (365)
T ss_dssp SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESSCH---HHHHHHHHHHHSCCCHHHHHHHHHSCCS----------EEEE
T ss_pred CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeCCc---hHHHHHHHHHcCCCCHHHHHHHhhcCCC----------EEEE
Confidence 111111 1123345555544445556654321100 00000 01111122111111 1234
Q ss_pred chhhh-hccCCCCCCHHHHHHHHHHHHhchhccCCCCCCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCccccc
Q 019048 235 DGLAV-LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (347)
Q Consensus 235 d~~~~-~~~~~~~LSgGqrQRv~IArALDEPts~Ld~g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 308 (347)
|+.+. .......+|+||+||.+++++|.+-... .+.++|+++| ....++++++.+ +++ ++..++++++.
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 55210 0011235899999999999998332210 1467999999 677788888854 654 56666666653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-15 Score=136.31 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555999999999999999999999999999999873
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-14 Score=124.48 Aligned_cols=162 Identities=10% Similarity=0.053 Sum_probs=82.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCC--CCCCCcEEEECCEeCCCCccccccccCCCccceeeccccccccch
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 176 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v 176 (347)
-|++|++++|+||||||||||+++|+|++.... .....+.+++++.+.. .. .....+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-----------------~~----~~i~~~ 79 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----------------RP----ERIREI 79 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-----------------CH----HHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-----------------CH----HHHHHH
Confidence 689999999999999999999999999765100 0003346666654321 00 011123
Q ss_pred hhhhHhhHHHHHhhhhhhhhhccCCChHHH---HHHHHHHHHH-CC-CCcccccccceeeeeechhhhhccCCCCCCH--
Q 019048 177 SDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHK-IG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV-- 249 (347)
Q Consensus 177 ~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~---~~~i~~~l~~-~g-l~~~~~~~~~~~~~vvd~~~~~~~~~~~LSg-- 249 (347)
+|+..+.+.++.+|+.+... ...... .+.+.+++.. +. .. +.=+.++|+.+-. +..++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~llilDe~~~~--l~~~~~~~~ 146 (231)
T 4a74_A 80 AQNRGLDPDEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDR-------PVKLLIVDSLTSH--FRSEYIGRG 146 (231)
T ss_dssp HHHTTSCHHHHHHTEEEEEC----CSHHHHHHHHHHHHHHHHHHTTSSS-------CEEEEEEETSSHH--HHHHSCSTT
T ss_pred HHHcCCCHHHHhhcEEEEec----CChHHHHHHHHHHHHHHHHhcccCC-------ceeEEEECChHHH--hccccCCCc
Confidence 44444444456666654321 111111 1223333331 11 11 1224678887532 2334554
Q ss_pred --HHHHHH--HHHHHhchhccCCCCCCeEEEEec--hH----HHhcccEEEEEeeCCe
Q 019048 250 --EKQYNQ--IVATTFNCPYLSFRDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 297 (347)
Q Consensus 250 --GqrQRv--~IArALDEPts~Ld~g~tiIiiTH--~~----~~~~aDri~v~l~~G~ 297 (347)
+|||+. .+.+.|-+-.. ..|+|||++|| .. +..+||++++ |++|+
T Consensus 147 ~~~~r~~~~~~~~~~l~~~~~--~~g~tvi~vtH~~~~~g~~~~~~~d~~l~-l~~~~ 201 (231)
T 4a74_A 147 ALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQANGGHILAHSATLRVY-LRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTCEEEEEEECC---------CCSEEEE-EEECT
T ss_pred chhHHHHHHHHHHHHHHHHHH--HCCCeEEEEeecccCcchhhHhhceEEEE-EEecC
Confidence 344432 33333311000 13789999999 33 7788999964 88753
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=130.24 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHh-------------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEE
Q 019048 242 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 291 (347)
Q Consensus 242 ~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v 291 (347)
+.+..||||||||++||++| ||||++||. +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 34556999999999999998 999999984 569999999 566778999976
Q ss_pred Eee
Q 019048 292 RTY 294 (347)
Q Consensus 292 ~l~ 294 (347)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 54
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=144.44 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-----------chhccCCCC----
Q 019048 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 270 (347)
Q Consensus 206 ~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~---- 270 (347)
+.+++ ++|..+||... .+++.+.+|||||+||++||++| ||||++||+
T Consensus 481 i~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 543 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543 (972)
T ss_dssp HHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHH
Confidence 44444 45888899752 14889999999999999999998 999999974
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEe------eCCeEeecCCcccccCCCC
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 312 (347)
|.|||+|+| .+....||+|++ | ++|++++.|++++++..+.
T Consensus 544 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 544 RLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE-ECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-eCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 344567999975 8 7999999999999987654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-14 Score=149.43 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||++++|++++|+||||||||||+|+|+++.-
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 667999999999999999999999999999987643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-15 Score=130.37 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999999997
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-15 Score=130.11 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=42.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeeccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 169 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~ 169 (347)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999996 568 888887763 2222345567777765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-13 Score=134.85 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.4
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++||++++|++++|+|+||||||||+++|+|+++ ++.|+|.++|.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 89999999887754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-13 Score=130.66 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=76.3
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEEC-CEeCCCCccccccccCCCccceeeccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~-g~~i~~~~~~~~~~~~r~~~~~~~~~~~~ 171 (347)
++++++. .+|++++|+||||||||||+|+|+|+... |..|.|.++ |+.... -....++++++....
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~t--------t~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHT--------TTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccc--------eEEEEEEEECCCCEe
Confidence 5557765 48999999999999999999999998751 578999886 654310 011123444443221
Q ss_pred cccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHH
Q 019048 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (347)
Q Consensus 172 ~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGq 251 (347)
+ +.+ .+.++ ++ ...+..+..+.+.++++.+++.. +.+..+.+|| ||
T Consensus 273 ~-----dtp-----gv~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 I-----DSP-----GVREF---GL---WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp E-----ECH-----HHHTC---CC---CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred c-----Ccc-----cHHHh---hh---cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 1 111 12221 11 12334556667788899999987 5689999999 99
Q ss_pred HHHHHHHHHh
Q 019048 252 QYNQIVATTF 261 (347)
Q Consensus 252 rQRv~IArAL 261 (347)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=116.68 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred ceeeEE-EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl-~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~ 59 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT 59 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc
Confidence 445777 899999999999999999999999999887 77788877553
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.33 E-value=9.8e-15 Score=151.20 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=86.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCce-------eeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC-CCcEEEE
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTY 141 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~-------~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p-~~G~I~~ 141 (347)
+.++++||++.|+... ..+++.++ +.+|+++. +||+||||||||||+++|+|++. | ++|.|++
T Consensus 9 ~~i~~~~l~~~~~~~~-r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~ 79 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTR 79 (608)
T ss_dssp -----------CHHHH-HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCC
T ss_pred chhhhhhhhHHHHHHH-HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEE
Confidence 3588999999996321 11211100 12466765 99999999999999999999997 8 7999999
Q ss_pred CCEeCCCCccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCc
Q 019048 142 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221 (347)
Q Consensus 142 ~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~ 221 (347)
+|.++.... .......++.++|++|+...+... ++.+++.......... ..++..
T Consensus 80 ~g~~i~~~~-~~~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~i~~~~~~~~~~--------------~~~~s~ 134 (608)
T 3szr_A 80 CPLVLKLKK-LVNEDKWRGKVSYQDYEIEISDAS----------EVEKEINKAQNAIAGE--------------GMGISH 134 (608)
T ss_dssp SCEEEEEEE-CSSSSCCEEEESCC---CCCCCHH----------HHHTTHHHHHHHHHCS--------------SSCCCS
T ss_pred cCEEEEEec-CCccccceeEEeeecccccCCCHH----------HHHHHHHHHHHHhcCC--------------ccccch
Confidence 998863100 000111223345555543322211 4444443321110000 011111
Q ss_pred cc-------ccccceeeeeechhhhhccCCCCCCHH-HHHHHHHHHHh-chhccCCCCCCeEEEEec--h----HHHhcc
Q 019048 222 SV-------IRKVNFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH--G----DLLSLT 286 (347)
Q Consensus 222 ~~-------~~~~~~~~~vvd~~~~~~~~~~~LSgG-qrQRv~IArAL-DEPts~Ld~g~tiIiiTH--~----~~~~~a 286 (347)
.. ...| =+.++|++++.......|+.+ ++|...+++.+ -+|. +.+++++|| + .+.+++
T Consensus 135 ~~i~l~i~~~~~p--~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~~~d~a~~~~l~la 207 (608)
T 3szr_A 135 ELITLEISSRDVP--DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPSNVDIATTEALSMA 207 (608)
T ss_dssp CCEEEEEEESSSC--CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEESSSCTTTCHHHHHH
T ss_pred HHHHHHhcCCCCC--ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEeccchhccHHHHHHH
Confidence 00 0011 157889998766656666654 45666777764 3332 356777777 2 111111
Q ss_pred -------cEEEEEeeCCeEeecCCcccc
Q 019048 287 -------DRARIRTYLGELLGIPPAKQI 307 (347)
Q Consensus 287 -------Dri~v~l~~G~iv~~g~~~~l 307 (347)
.+.++++.++.++..|+.+++
T Consensus 208 ~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 208 QEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HHHhhcCCceEEEecchhhcCcccHHHH
Confidence 223344777777777765433
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-14 Score=136.10 Aligned_cols=130 Identities=14% Similarity=0.021 Sum_probs=78.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCCCCccccccccCCCccceeecccccc---
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL--- 172 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~--- 172 (347)
++.+|++++|+||||||||||+|+|+ +++ |++|+|.+ +|++++... .... ...+++++|.+...
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~--~~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIP--FGKGSFVGDTPGFSKVE 230 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEE--ETTTEEEESSCCCSSCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEE--cCCCcEEEECcCcCcCc
Confidence 55689999999999999999999999 988 99999999 888775221 1111 12357777765321
Q ss_pred --ccc-hhhhhH-hhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCC
Q 019048 173 --SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (347)
Q Consensus 173 --~~~-v~qn~~-~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LS 248 (347)
..+ + +++. .++.. .... ..........+...++.++++.++|.+. .+++++..||
T Consensus 231 l~~~lt~-e~l~~~f~~~--~~~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 289 (302)
T 2yv5_A 231 ATMFVKP-REVRNYFREF--LRYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKIIK 289 (302)
T ss_dssp GGGTSCG-GGGGGGCGGG--HHHH--HHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHTT
T ss_pred ccccCCH-HHHHHHHHHH--HHcc--CCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 122 3 3331 11100 0000 0001111222334568889999999853 3588899999
Q ss_pred HHHHHHHHHHH
Q 019048 249 VEKQYNQIVAT 259 (347)
Q Consensus 249 gGqrQRv~IAr 259 (347)
|.+++++.|||
T Consensus 290 ~~~~R~~~~~~ 300 (302)
T 2yv5_A 290 VYLEEIKELCR 300 (302)
T ss_dssp CCCTTHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98899999987
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-14 Score=134.41 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=41.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
..++|++++|+||||||||||+++|+|+++ |+.|+|.+.|.++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 347899999999999999999999999999 99999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-14 Score=136.93 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=85.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc--------cCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeec-ccccccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 174 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~--------~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~-~~~~~~~ 174 (347)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.++.... .+-..+...++..... +......
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999987 5 89999999998875210 0111111111111111 1111111
Q ss_pred ch---hhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHH---HHHHHHCCCCcccccccceeeeeechhhhhccCCCCC
Q 019048 175 DA---SDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (347)
Q Consensus 175 ~v---~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i---~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~L 247 (347)
++ +|+..+... ++.++..++ ......... .+.-. ...++.++.+||...+.+.+. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~-------~p~~~~~~~~~~~~~~~--------~~~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMA-------DPGPIIQTFFSHEVLCQ--------RYLLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTC-------CHHHHHHHHHHSHHHHH--------HEEEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCC-------CHHHHHHHHhcCccccC--------eEEECCEEEEEEHHHHHHHHh-hc
Confidence 11 121111000 111111110 001110010 00111 123566889999987766555 89
Q ss_pred CHHHHHHHHHHHHh-------chhccC-------CCCCCeEEEEec
Q 019048 248 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 279 (347)
Q Consensus 248 SgGqrQRv~IArAL-------DEPts~-------Ld~g~tiIiiTH 279 (347)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999988887 787 22 346899999999
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-14 Score=127.81 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCC---CcEEEECCEeCC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 147 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~---~G~I~~~g~~i~ 147 (347)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5799999999999999999999999 77 899999998753
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-14 Score=123.15 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=51.6
Q ss_pred EEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 73 ~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+.+++++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++.
T Consensus 9 ~~~~~~~~~g~---~~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~------~~G~V~~~g~~i~ 71 (158)
T 1htw_A 9 PDEFSMLRFGK---KFA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG------HQGNVKSPTYTLV 71 (158)
T ss_dssp CSHHHHHHHHH---HHH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT------CCSCCCCCTTTCE
T ss_pred CCHHHHHHHHH---HHH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCC------CCCeEEECCEeee
Confidence 34456667753 234 566999999999999999999999999999999984 7899999987653
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=138.21 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6679999 99999999999999999999999873
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-13 Score=132.99 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=36.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++||+++|+.. .+ ++++||+| +|+|+||||||||+++|+|+..
T Consensus 10 ~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999752 34 56699998 9999999999999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-13 Score=128.41 Aligned_cols=122 Identities=12% Similarity=-0.042 Sum_probs=74.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCCCCccccccccCCCccceeecccccc-c
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-S 173 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~-~ 173 (347)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++++... +.. ..+.+++++|.+... .
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~--~~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLL--KFDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEE--ECTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEE--EcCCCCEEEECcCCCcc
Confidence 4577899999999999999999999999999 99999999 898875321 111 112467888876432 2
Q ss_pred cchhhh----hHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCC
Q 019048 174 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (347)
Q Consensus 174 ~~v~qn----~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LS 248 (347)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|+.. .++++|++||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 333333 334444 45 6776653211 12334568899999999632 3588888888
Q ss_pred H
Q 019048 249 V 249 (347)
Q Consensus 249 g 249 (347)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-14 Score=143.83 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=39.3
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.++|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 37899999999999999999999999998 89999999887663
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-12 Score=136.16 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6779999 9999999999999999999999999864
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=105.99 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=46.2
Q ss_pred hccCCCCCCHHHHHHHHHH------HHh---------chhccCCCC----------------CCeEEEEec-hHHHhccc
Q 019048 240 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 287 (347)
Q Consensus 240 ~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aD 287 (347)
.++++.+||||||||++|| ||| ||||++||. |.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 4778999999999999886 776 999999883 789999999 56678999
Q ss_pred EEEEEee
Q 019048 288 RARIRTY 294 (347)
Q Consensus 288 ri~v~l~ 294 (347)
++++ |+
T Consensus 131 ~ii~-l~ 136 (148)
T 1f2t_B 131 HVIR-IS 136 (148)
T ss_dssp EEEE-EE
T ss_pred EEEE-EE
Confidence 9965 83
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-13 Score=118.63 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=35.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+++|++++|+||||||||||+++|++. +..|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccch
Confidence 5789999999999999999999999996 3579999998654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-13 Score=134.98 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=87.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
.|++++ ++.|+. .. |+++||+|++|++ +||+||||||||||+|+|+|+.- .| .++..
T Consensus 16 ~l~~~~-~~~y~~---~~----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g------~~~~~ 74 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EG------EPATH 74 (427)
T ss_dssp -CCCCC-CC-CC-----C----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------------
T ss_pred eEEEee-EEEECC---ee----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cC------CcCCC
Confidence 477787 888864 22 4559999999999 99999999999999999999852 11 11110
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC-CCCc----c
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEP----S 222 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~----~ 222 (347)
. .....++.+++++|+...+..+ +.+++.+... +........ -...+..++.+++... ++.. .
T Consensus 75 ~----~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~------i~~~i~~q~~~~L~e~~~i~r~l~~~ 143 (427)
T 2qag_B 75 T----QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKP------IVEFIDAQFEAYLQEELKIRRVLHTY 143 (427)
T ss_dssp C----CSSCEEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHH------HHHHHHHHHHHHHHHC--CCCCCCCS
T ss_pred C----CccceEeeEEEEeecCccccccchhhhhhhhhc-cccchhhhH------HHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 0 0000112345666654433333 4444433210 000000000 0122344555556654 4432 1
Q ss_pred cccccce-eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCC-----------------CCCeEE
Q 019048 223 VIRKVNF-VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVV 275 (347)
Q Consensus 223 ~~~~~~~-~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld-----------------~g~tiI 275 (347)
...+||+ +.|++|.. +.|+-.+ +.|+++| |+|+..|. .|.+|+
T Consensus 144 ~d~rVh~~v~fI~d~~-------~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~ 213 (427)
T 2qag_B 144 HDSRIHVCLYFIAPTG-------HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIY 213 (427)
T ss_dssp CC--CCEEEEEECCCC----------CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCC
T ss_pred ccccccEEEEEEeCCC-------CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEE
Confidence 2235675 66777765 2455554 6888888 88887753 288888
Q ss_pred EEec
Q 019048 276 VVTH 279 (347)
Q Consensus 276 iiTH 279 (347)
.++.
T Consensus 214 ~is~ 217 (427)
T 2qag_B 214 QFPT 217 (427)
T ss_dssp CCC-
T ss_pred ecCC
Confidence 8886
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-11 Score=120.03 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=40.4
Q ss_pred ceee-EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC----cE-EEECCEe
Q 019048 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQ-VTYNSSV 145 (347)
Q Consensus 93 L~~i-sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~----G~-I~~~g~~ 145 (347)
|+.+ ++.|++|++++|+||||||||||++.|++..... |++ |. |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC
Confidence 3334 6799999999999999999999999999998210 565 67 8888754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-12 Score=122.49 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=43.9
Q ss_pred eeeEEEeCCCceeeecCCceeeEE-------EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 143 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl-------~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g 143 (347)
..++++|-... ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 45666663222 233 344665 678899999999999999999999999998 76 56665433
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=109.47 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999999765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=124.15 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-12 Score=126.67 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=59.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++|+++++++.|+. ..+ |+++||++.+|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 28 ~~ie~~~~~~~~~~---~~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 28 TLAESRRADHRAAV---RDL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHTCSSHHHHHHH---HHH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHHeeCCcccccCh---HHH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 46888999999953 234 666999999999999999999999999999999999 99999999998864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-11 Score=118.53 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+++.|+.++|||+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=101.03 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=33.4
Q ss_pred eEE-EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 96 SDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 96 isl-~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+.. -+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 12 ~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 443 689999999999999999999999999 4 4455566554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-11 Score=117.38 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=37.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCC-CcEEEECCEeC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 146 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~-~G~I~~~g~~i 146 (347)
+++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 78999999999999999999999999999 87 89997766444
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.05 E-value=8e-12 Score=121.47 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=43.9
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCc
Confidence 66999999999999999999999999999999999 99999999874
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=101.26 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=51.8
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 279 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH- 279 (347)
++.+.+.......+.+..||||||||++||++| ||||++||. +.++|+|||
T Consensus 47 gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 47 GLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 455555555555677889999999999999998 999999984 678999999
Q ss_pred hHHHhcccEEEE
Q 019048 280 GDLLSLTDRARI 291 (347)
Q Consensus 280 ~~~~~~aDri~v 291 (347)
..+..+||+++.
T Consensus 127 ~~~~~~ad~i~~ 138 (173)
T 3kta_B 127 DVMMANADKIIG 138 (173)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 667789999964
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-10 Score=100.48 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCC-----CCcEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p-----~~G~I~~~g~~ 145 (347)
-|++|++++|+||||||||||++.|++ +++ + ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 589999999999999999999999999 454 4 56788888754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-11 Score=116.75 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=27.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE---CCEeCC
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGD 147 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~---~g~~i~ 147 (347)
+++.+|++++|+||||||||||+|+|+|+.. |..|+|.+ +|+.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccc
Confidence 6788999999999999999999999999999 99999998 787765
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.7e-13 Score=124.27 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++++|.+++| ++|+||||||||||+++|+|.+. + |.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 78999887654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-13 Score=129.89 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=49.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCC-------eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~G-------e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
+++.++++..|+.. .+ ++++++.|.+| +.++|+||||||||||+++|++.+.. .+.+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTTCCSH
T ss_pred HcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechHhcCH
Confidence 46667777777642 23 56699999876 88999999999999999999999820 0006667666555
Q ss_pred Ee
Q 019048 144 SV 145 (347)
Q Consensus 144 ~~ 145 (347)
.+
T Consensus 91 ~~ 92 (334)
T 1in4_A 91 GD 92 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=96.35 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.5
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+.++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5788999999999999999999999999985 4 3667665543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.3e-11 Score=107.79 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=41.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.|+++|+...|+ -+|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.++.
T Consensus 9 ~l~l~~~~~~~~-------------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFA-------------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEE-------------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccC-------------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 478888765542 1455666 8999999999999999999999999 99999999998873
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-11 Score=114.39 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=54.8
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEe-------------------cCCeEEEEECCCCChHHHHHHHHhhcccCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i-------------------~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~ 130 (347)
.+|+++||++.|.. + +++++|.+ .+|+++||+||||||||||+++|+|++...
T Consensus 36 ~~i~~~~v~~~y~~---~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP---L-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHHH---H-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHHH---H-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 46999999999942 3 66699988 999999999999999999999999987511
Q ss_pred CCCCCCcEEEE---CCEe
Q 019048 131 KFASERAQVTY---NSSV 145 (347)
Q Consensus 131 ~~~p~~G~I~~---~g~~ 145 (347)
|++|+|.+ +|..
T Consensus 108 ---~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 108 ---PEHRRVELITTDGFL 122 (308)
T ss_dssp ---TTCCCEEEEEGGGGB
T ss_pred ---CCCCeEEEEecCCcc
Confidence 57899999 7754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=105.15 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=33.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHH--hhcccCCCCCCCC-----cEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASER-----AQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L--~gl~~~~~~~p~~-----G~I~~~g~~ 145 (347)
-|++|++++|+||||||||||++.| .++.+ ++. +.+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 5899999999999999999999944 56665 433 378888754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-11 Score=111.01 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=26.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+++|+|++|||||||++.|.+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999999998
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-11 Score=111.03 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHh---hcccCCCCCCCCcEEEECCEe
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~---gl~~~~~~~p~~G~I~~~g~~ 145 (347)
++++++|+||||||||||+++|+ |+.. ++.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9988 899998877643
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-10 Score=100.37 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=34.9
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC--CCcEEEECCEe
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSV 145 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p--~~G~I~~~g~~ 145 (347)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQ 55 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCC
Confidence 445689999999999999999999999999997 6 57888777654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.7e-10 Score=95.90 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 68999999999999999999986 3568899988654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-10 Score=100.80 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHh-hccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~-gl~~ 128 (347)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45699999999999999999999999999999 9985
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-10 Score=104.45 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=34.7
Q ss_pred CcEEEeee-EEEeCCCceeeecCCceeeEEEecC---CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl-~~~y~~~~~~~~l~~L~~isl~i~~---Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+++|+ +++|+... .+ |+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~--~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQ--QI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------C--HH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcc--hh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 99993232 34 6669999999 99999999999999999999999764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-09 Score=99.41 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=41.1
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++|+.++|++++|+|+|||||||+++.|++++. +..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcccc
Confidence 566778999999999999999999999999998 8888998877664
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-09 Score=93.49 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=35.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCC---CCcEEEECCEeC
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 146 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p---~~G~I~~~g~~i 146 (347)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 57899999999999999999999999998 5 367777776543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-09 Score=106.70 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=39.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCCCCcEEEECCEeCC
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++++.++..++|.|++||||||++++|.. ++. .+.|++.+.+.|.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 889999999999999999999999999875 444 56688887777765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-09 Score=106.08 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 345889999999999999999999999999999999 999999998854
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-08 Score=83.75 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 5599999999 999999999999999999999987
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-08 Score=89.56 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999985
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.5e-09 Score=92.30 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=43.4
Q ss_pred eeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE--EECCEeCC
Q 019048 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 147 (347)
Q Consensus 75 ~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I--~~~g~~i~ 147 (347)
+|++..++. +.+ .+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 355555543 334 344888889999999999999999999999999986 45777 88876553
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=89.23 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=50.5
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|+.
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5677888888542 1238888 999999999999999999999999999 88899998876653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-08 Score=85.64 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999999999999996
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=90.02 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=54.1
Q ss_pred HHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHHHHHH------HHHHh----------chhccCCCC---
Q 019048 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD--- 270 (347)
Q Consensus 210 i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~------IArAL----------DEPts~Ld~--- 270 (347)
+.+++..+++.......-+.+.|.+.... .+.++..|||||+||++ +|++| ||||++||.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPN-GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETT-EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCC-CccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556666654311111112444444432 13566789999999985 45654 999999873
Q ss_pred ------------CCeEEEEec-hHHHhcccEEEEEee
Q 019048 271 ------------DKPVVVVTH-GDLLSLTDRARIRTY 294 (347)
Q Consensus 271 ------------g~tiIiiTH-~~~~~~aDri~v~l~ 294 (347)
+.+||++|| ..+..+||++++ |+
T Consensus 324 ~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~-l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN-VK 359 (371)
T ss_dssp HHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred HHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE-EE
Confidence 468999999 457789999975 65
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-08 Score=84.56 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||++++|.+++|+|++||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 566999999999999999999999999999998764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-07 Score=90.01 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=26.6
Q ss_pred EEEECCCCChHHHHHHHHhh-cccCCCCCCCCcEEEECCEeC
Q 019048 106 LLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g-l~~~~~~~p~~G~I~~~g~~i 146 (347)
+.|+||||+|||||+++|++ ++. |+.|.+.++|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceee
Confidence 89999999999999999999 788 8899999998764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-08 Score=90.04 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHh---hcccCCCCCCCCcEEE--------ECCEeCC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 147 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~---gl~~~~~~~p~~G~I~--------~~g~~i~ 147 (347)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9998 9999999 8887763
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=82.23 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|++++|+||||||||||+++|+++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999886
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=82.81 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=32.0
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccccc
Confidence 4667899999999999999999999999876 6688887554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=87.59 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=37.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g 143 (347)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.|.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEE
Confidence 555777799999999999999999999999998876 5445 566554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-07 Score=82.66 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=37.3
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..++|++++|+|+||||||||+++|+++++ +..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 357889999999999999999999999998 7788888766553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-07 Score=88.81 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.0
Q ss_pred eeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 94 ~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999887764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-07 Score=81.16 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=31.8
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
+|++++|+.++|+||||||||||+++|++.+. +.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 45677899999999999999999999999997 6655
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-07 Score=77.57 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEeC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 146 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~i 146 (347)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999998 5 57 677766443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-07 Score=90.69 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-EECCE
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 144 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-~~~g~ 144 (347)
=|++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 488999999999999999999999999887 666765 55543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.4e-07 Score=76.96 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=32.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCC------CCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p------~~G~I~~~g~~i 146 (347)
.++|+|+||||||||++.++|........| ++|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875211112 468899998765
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-07 Score=80.66 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=34.7
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 445689999999999999999999999987 37788887654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-07 Score=90.86 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=38.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EE-EECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QV-TYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I-~~~g~~i 146 (347)
.+++|++++|+|+||||||||+++|++++. |+.| .+ +++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 578999999999999999999999999999 8886 67 4888554
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.1e-06 Score=80.63 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCC------CCCCCCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~------~~~p~~G~I~~~g~~i 146 (347)
+++|+|++|||||||+|.|+|..... ...++.|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 39999999999999999999875410 0014568888887543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=77.97 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999987
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-07 Score=82.53 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.1
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 56699999999 89999999999999999999875 58888887554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5.8e-07 Score=87.79 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 556999999999999999999999999999998654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.8e-07 Score=83.21 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=39.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+++++|++++| ++|+||||||||||+++|++.+. .|.|.+++.++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 56699999999 89999999999999999999875 58888887654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-07 Score=86.68 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=37.1
Q ss_pred ceeeEEEecCCe------EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge------~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
|++++..+.++. ++||+||||||||||+++|++++... |+.|.+.+-+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 555777777776 99999999999999999999998721 3556655433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-06 Score=83.86 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc----CC---CCCCCCcEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE----ND---KFASERAQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~----~~---~~~p~~G~I~~~g~~ 145 (347)
.+++|..++|||+||||||||+|+|+|... +. ...|+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 567899999999999999999999999211 00 111889999998743
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-06 Score=76.42 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-|+...+|++++|+||||||||||++.|.+.++
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356667899999999999999999999999875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-06 Score=74.26 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCC------CCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p------~~G~I~~~g~~i 146 (347)
.++|+|+||||||||++.|+|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 357888988754
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=7.2e-07 Score=87.24 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=46.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCce--------------eeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~--------------~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.++||++.|+..... |+ |+++.|.+|+.++|+||+|||||||++.|++...
T Consensus 133 ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 48899999999865433 66 6999999999999999999999999999999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-06 Score=72.72 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 468999999999999999999999865 5567776444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-06 Score=72.25 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999876
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=66.03 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998765
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.7e-06 Score=71.67 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~i 146 (347)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4789999999999999999999999987 5 56 666666443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-06 Score=83.11 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=50.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
+++.+++.+.|+. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~---~~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALS---TQL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHH---HHH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred HhhcCCchhhhHH---HHH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 3555666656643 123 556999999999999999999999999999999998 7777777766554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-06 Score=75.98 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.6
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc---cCCCCCCCCcEEEE
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~---~~~~~~p~~G~I~~ 141 (347)
+.+++|+||+||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999877 4 67787776
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-06 Score=79.02 Aligned_cols=40 Identities=15% Similarity=0.423 Sum_probs=34.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECCEe
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 145 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g~~ 145 (347)
.+|++++|+|+|||||||+++.|++.+. +++| +|.+-+.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecC
Confidence 4789999999999999999999999998 7778 67665544
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-06 Score=73.18 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=27.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|.+++|+|++|||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 678899999999999999999999999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.6e-06 Score=87.90 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
|++++++..++|+|++|||||||++.|++..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 5678899999999999999999999999876510 266877 555444
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.4e-06 Score=68.95 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 33466777665 89999999999999999998544
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.9e-06 Score=79.60 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 78888888776643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1e-05 Score=73.31 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.6
Q ss_pred ceeeEEEec---CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 93 L~~isl~i~---~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 566888877 999999999999999999999999998 6 555544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=7.3e-06 Score=72.62 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=37.5
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc--EEEECCEe
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 145 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G--~I~~~g~~ 145 (347)
+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChH
Confidence 4567899999999999999999999999998 7788 88887644
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.1e-06 Score=81.47 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=30.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh--cccCCCCCCCCcEEE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVT 140 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g--l~~~~~~~p~~G~I~ 140 (347)
|++++++++ .++|||++|||||||++.|.| +++ +.+|.+.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT 68 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVT 68 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCccc
Confidence 566999998 899999999999999999999 666 4555544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.4e-06 Score=85.44 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCC-cEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~-G~I~~~g~~i 146 (347)
++++++.+..|+.++|+||||||||||+++|++++. +.. |.+.+.+...
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 556999999999999999999999999999999998 666 7788776544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.68 E-value=6.7e-06 Score=83.80 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=39.2
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCE
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~ 144 (347)
+.++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 34477787 899999999999999999999999997 77788877663
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.64 E-value=1.7e-05 Score=78.50 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=48.0
Q ss_pred EeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++++.|+.. -++++|+ ++++++++|++||||||++..|++.+. +..++|.+.+.|+.
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677777542 1237787 899999999999999999999999999 88889998877754
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.8e-05 Score=68.58 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=31.1
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHH-hhcccCCCCCCCCcEEEECC
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L-~gl~~~~~~~p~~G~I~~~g 143 (347)
.--+++|++++|+||||||||||+..+ .++.+ ...+.++++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 446899999999999999999996544 55555 4444555554
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1e-05 Score=70.75 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
++++||..++. .++|+|++|||||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 55689988777 578999999999999999986
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.8e-05 Score=66.43 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
++++++..++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 55699998887 778999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.6e-05 Score=66.50 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=32.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE-EECC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 143 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I-~~~g 143 (347)
...+|.++.|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 446889999999999999999999999987 655655 4443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=4.6e-05 Score=64.96 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-05 Score=68.29 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+.++++.+| +.+|+|||||||||++.+|.-++-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33467777765 899999999999999999975443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.57 E-value=1.3e-05 Score=75.69 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=47.9
Q ss_pred EeeeEEEeCCCceeeecCCcee-eEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 74 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 74 i~nl~~~y~~~~~~~~l~~L~~-isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
.+++...|+.. .++ ++|+.+ +.+++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 45666667542 234 777776 99999999999999999999999998 77789988777654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.1e-05 Score=67.12 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+||+..+|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.5e-05 Score=67.59 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|+|++||||||++++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.5e-05 Score=67.78 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.2
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356889999999999999999999988764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=2.4e-05 Score=79.07 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=38.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++++++.+++| ++|+||+|+|||||+++|++... .+.+.+++.++
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~ 100 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 100 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHH
Confidence 45589999999 89999999999999999999864 57788887665
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=5.5e-05 Score=66.09 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.8e-05 Score=63.22 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.|++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=9.9e-05 Score=72.96 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=31.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccC----C---CCCCCCcEEEECCEeC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFEN----D---KFASERAQVTYNSSVG 146 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~----~---~~~p~~G~I~~~g~~i 146 (347)
-.++|+|+||||||||+|.|+|.... . .-.+..|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 38999999999999999999997420 0 0014568899988754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00017 Score=69.62 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55588888776 899999999999999999974
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=61.32 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=68.74 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444555699999999999999999999998887665
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=63.59 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5799999999999999999999876211 123677766543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.30 E-value=7.4e-05 Score=70.25 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.+++|+|++|||||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999863
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=9.7e-05 Score=64.57 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=71.88 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccC------CCCCCCCcEEEECCE
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNSS 144 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~------~~~~p~~G~I~~~g~ 144 (347)
.+..|..++|||++|+|||||+++|+|.-.. ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999987210 001167788887663
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=62.68 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998644
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=2.5e-05 Score=75.53 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.7
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.+.|++..|+.. .+ +++++|.| +|+|++|+|||||++.|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 358889998888642 23 45588877 9999999999999999987654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=61.90 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|||||||++.+++...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=60.81 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=65.73 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=32.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
..+.+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 345678899999999999999999998775 25677777443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=66.01 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.6
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.+++| +.|+||+|+|||||+++|++.+.
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 55555666 88999999999999999999875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=5.3e-05 Score=73.27 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=31.7
Q ss_pred ceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4458888899988 99999999999999999998764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=64.22 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999999744
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=60.26 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00065 Score=58.29 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|||||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999976654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00013 Score=63.90 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.04 E-value=7.2e-05 Score=71.03 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.7
Q ss_pred ceeeEEEecCCeE--EEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~--~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++..|+.|++ +.|.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4558888999988 99999999999999999999987
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00032 Score=58.63 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHH
Q 019048 105 SLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L 123 (347)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00036 Score=59.63 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998664
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=60.47 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998664
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=59.82 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00043 Score=61.13 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00034 Score=63.70 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00039 Score=66.92 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.5
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=63.06 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00047 Score=59.01 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00037 Score=59.39 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999997664
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00054 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00041 Score=68.78 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~ 147 (347)
++.+++++|++||||||++..|+..+. +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 77788888666653
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0006 Score=72.27 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.5
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..|+.+.|+||+||||||++.++.....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788999999999999999999876554
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00059 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0003 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..+.++.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00041 Score=65.53 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=29.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444655689999999999999999999988875443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00057 Score=57.80 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00054 Score=60.20 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876553
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00068 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998776
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=65.71 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
.+..++|+|++|||||||++.|...+. +..+.|.+-+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEe
Confidence 566899999999999999999998887 6667776643
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00063 Score=58.48 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999987553
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00096 Score=64.61 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=30.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc------CCCCCCCCcEEEECC
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNS 143 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~------~~~~~p~~G~I~~~g 143 (347)
|-.++|||.+|+|||||++.|++--. .....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 001126778888766
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00095 Score=62.26 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
.+..+.|.|||||||||+.+.|..-++ .+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 456899999999999999999987553 25566654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00071 Score=59.01 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00069 Score=58.79 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00087 Score=57.28 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00072 Score=58.55 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+|++|||||||++.|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999999876
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00077 Score=58.81 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997664
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00093 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.-.++|+|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0021 Score=56.16 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=61.58 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEE
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I 139 (347)
..+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 655544
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0024 Score=55.26 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0008 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=61.94 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.0
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 456677899999999999999999998764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00076 Score=61.91 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0023 Score=60.69 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh----cccCCCCCCCCcEEEECC
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK----VFENDKFASERAQVTYNS 143 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g----l~~~~~~~p~~G~I~~~g 143 (347)
++...+++ .|.-++|+|+||+|||||+..|.+ ++. .+...|...+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~-----dD~~~i~~~~ 183 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVA-----DDNVEIREIS 183 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEE-----SSEEEEEESS
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceec-----CCeEEEEEcC
Confidence 33488888 788999999999999999999987 555 4555555544
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998743
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00076 Score=57.40 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=58.13 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=54.35 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0039 Score=52.34 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+.+++|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999987653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=54.96 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 578999999999999999987543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0024 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.-.++|+|++|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.67 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=54.73 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988743
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998644
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=55.59 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=54.50 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=54.22 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=54.83 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=55.83 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=58.17 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++.+++|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=54.82 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987553
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
--.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|||||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.|.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
...+++|.|++||||||+.+.|+.-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999998654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=57.20 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=60.36 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=53.44 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0007 Score=67.86 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 33366677777 78999999999999999998654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.003 Score=60.26 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.1
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999998875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=56.09 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=58.88 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987553
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987553
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0025 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998876
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998776
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0013 Score=58.99 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.7
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.+.+|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346789999999999999998887653
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0015 Score=57.83 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999987654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.|.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998743
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=56.53 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998644
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0023 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998765
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=59.58 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0011 Score=61.87 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999988654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.005 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0036 Score=59.15 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999988654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=58.07 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=53.47 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0019 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999886
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0028 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++-+++|.|++||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=60.04 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+++|+|.+|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0018 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999873
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0052 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=53.98 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998744
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=59.78 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.005 Score=52.47 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999873
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0043 Score=58.79 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999887
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0048 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=61.28 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998854
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0029 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0016 Score=57.03 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998854
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=58.17 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++..+.|.||+|+|||||+++|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999998654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0033 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0056 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999984
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
--.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0052 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-.++|+|+.|+|||||++.+.+-..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 34689999999999999999987543
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0026 Score=58.97 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0032 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0034 Score=54.20 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0064 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0034 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=55.83 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999987653
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0035 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.004 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998644
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|+|+.|||||||++.|++-+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999987653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=61.29 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|||++|+|||||+++|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0032 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0036 Score=53.08 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0027 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998744
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0034 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.|.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0036 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0033 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|+.|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0034 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|..|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=53.85 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.004 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0034 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=59.88 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987664
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0032 Score=53.28 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=20.0
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
-.++|+|+.|+|||||++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0032 Score=58.94 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999876
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998755
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.004 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0043 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0073 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0047 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0045 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.005 Score=54.96 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.++.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0052 Score=58.88 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 556899999999999999999997654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0046 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446899999999999999999854
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0048 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 444588999999999999999988664
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0044 Score=56.53 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|++|+|||||++.|.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999743
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0074 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.9
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++ .|..++|+||+|||||||...|+.
T Consensus 28 ~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 28 VLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 66665 678899999999999999998875
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0031 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.3
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=56.71 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0054 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+|-+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998876
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0046 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0047 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.9
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...+.|.||+|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999998775
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0043 Score=56.06 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+|-++.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999998775
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0053 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 688999999999999999887544
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0051 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++++|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998654
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0063 Score=59.64 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-....++.|+|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34467899999999999999999987533
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0054 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.3
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|+|+.|||||||++.++.-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999987643
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0054 Score=55.70 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998876
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0029 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998853
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0066 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|.|..||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0071 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986553
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0071 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-+.|.||+|+|||||++.|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4478999999999999999998664
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998775
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0063 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0048 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.7
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+-+|+.++|+|++|+|||||++.|..-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5677899999999999999999999987665
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0051 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++-+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778999999999999999999987764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0069 Score=53.65 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|||++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0064 Score=54.56 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=26.2
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+-.+++..++.|+||.||||+|..+.|+.-+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 33566778899999999999999999986653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0045 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345699999999999999999853
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0055 Score=60.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||++.|+|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999854
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0078 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998776
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0068 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999754
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0068 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0032 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.3
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998865
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.007 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999998875
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0018 Score=58.72 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=24.0
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.| +.|.||+|+|||||+++|+....
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 3344555 77999999999999999998654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0078 Score=52.89 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0076 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+|.++.+-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999887
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0081 Score=56.34 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
-+++|+++.|.|++|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0084 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0092 Score=57.44 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.9
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.++.|.|++|||||||+..++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876554
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0088 Score=51.80 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0094 Score=49.23 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 445688999999999999999987654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.012 Score=52.04 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHh
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986543
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=50.24 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.8
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
.-+++ .|.-++|.|+||+|||||.-.|..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55555 678899999999999999987753
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.013 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0083 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++++++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999998864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=54.72 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+-.++|+|.+|+|||||+|.|.|-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999999865
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.009 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998774
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999998775
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0042 Score=61.45 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=29.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
.+++|+|++|+||||++..|++.+. .....|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 5899999999999999999999887 443456554434
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.015 Score=57.63 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.012 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||.|+|||||++.++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999987664
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.018 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999998775
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0096 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHH-Hhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~-L~gl~ 127 (347)
.++|+|+.|||||||++. +.+-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 578999999999999998 55543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.014 Score=54.50 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999997764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.023 Score=50.49 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
.++|||.+|+|||||++.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHH
Confidence 58899999999999999875
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.02 Score=54.07 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999886
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+||||++++|+..+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=57.62 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|||++|+|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+..+.|.||+|+|||||++.++..+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.0054 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=56.27 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++..++++|.+|+|||||+|.|.+..
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 45679999999999999999999874
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.0034 Score=54.05 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.|.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998875
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.018 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.+++|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.017 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.017 Score=55.19 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.6
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5566665556899999999999999998864
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.011 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|..|||||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.2
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999998775
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.011 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.|-.++|+|++|+|||||+|.|.+-.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.017 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999998653
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.023 Score=49.18 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHH-HHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLV-NRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLl-k~L~gl~~ 128 (347)
+|.++.|.||.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 55555543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=54.08 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
..-+.|.||.|+|||||++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3458899999999999999999876
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.02 Score=51.87 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987553
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=58.09 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|-.+.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999886
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.5
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666789999999999999999999875
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.021 Score=58.42 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|-++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998775
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.015 Score=56.06 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999874
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+|||+|+++|+.-+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998764
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.029 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||+|++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45688999999999999999998765
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.29 E-value=0.025 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-+.|.||+|+|||+|+++|+....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3578999999999999999987654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.019 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+|..|+|||||+|.|.|--
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999853
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.026 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||+|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.027 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
....+.|.||+|+|||||+++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 445689999999999999999987653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.026 Score=54.53 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=25.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|.++.|.|++|||||||+..++.-..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 378999999999999999999977765443
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.026 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-+++|..+.|.||.|||||||+..++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5778888999999999999999998753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.024 Score=53.01 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||+|+|||||++.|+....
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987654
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=54.15 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||+|+|||||++.|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.025 Score=55.73 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=29.7
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333544589999999999999999999998887654
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.027 Score=58.19 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.++.|+|.+||||||+.+.|...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.021 Score=58.67 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
--+++|+|+.|+|||||+|.|.|-.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.029 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998764
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.029 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=24.4
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.-++| +.|.||.|||||+|+++|++-..
T Consensus 179 i~~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 344566 78999999999999999998765
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.027 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++++|+.|+|||||++.|.+...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999998543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 347 | ||||
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 7e-04 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.002 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 0.004 |
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 7e-04
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 156
D DV T +L+IG G GKSSL+ R F +D F E A + ++ +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLR----FTDDTFDPELAATIGV------DFKVKTIS 50
Query: 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216
+ +++DT + + + R + VI D + ++
Sbjct: 51 VDGNKAKLAIWDTAGQERFRT----LTPSYY----RGAQGVILVYDVTRRDTFVKLDNWL 102
Query: 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 266
E R + L K + + +V++ A + ++
Sbjct: 103 NELETYCTRNDIVNM-----LVGNKIDKENREVDRNEGLKFARKHSMLFI 147
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (86), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 96 SDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 154
S+YD + K LLLIG G GKS L+ R F +D + ++ Y S++G + ++
Sbjct: 1 SEYDYLFK---LLLIGNSGVGKSCLLLR----FSDDTYTND-----YISTIGV-DFKIKT 47
Query: 155 YTIPRGSNSFSLYDT 169
+ + ++DT
Sbjct: 48 VELDGKTVKLQIWDT 62
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.002
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
+ ++L++G G GKSS VN I + S + R
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIG--------ERVVSI---SPFQSEGPRPVMVSRSRA 78
Query: 161 SNSFSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSLRN--RMRCKAH 215
+ ++ DT L + N +N+IK ++++ L + R D+ + N ++ KA
Sbjct: 79 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
Query: 216 KIGCEPSVIRKVNFVIFVVDGL 237
+ K +
Sbjct: 139 TDSFGKGIWNKAIVALTHAQFS 160
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 36.1 bits (83), Expect = 0.004
Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 20/224 (8%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 156
+V ++L+GP G GK++ + I+ + E + ++
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216
I S++LY ++ D+ + + + K+ E + V + L NR
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK------ 136
Query: 217 IGCEPSVI-----RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271
P + ++V +V V E S+++ + + L +
Sbjct: 137 ----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM--RAELKKLQRQLG 190
Query: 272 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 313
+ VTH + +++ DR G L + +++D P +
Sbjct: 191 VTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSPDEVYDKPAN 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.82 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.65 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.59 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.56 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.44 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.38 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.34 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.31 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.28 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.27 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.27 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.26 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.25 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.2 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.18 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.03 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.0 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.98 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.98 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.97 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.97 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.96 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.95 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.94 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.94 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.93 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.88 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.85 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.83 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.81 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.79 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.78 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.74 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.7 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.69 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.67 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.67 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.65 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.61 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.58 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.55 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.54 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.53 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.52 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.47 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.4 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.39 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.38 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.3 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.3 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.27 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.24 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.24 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.21 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.2 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.18 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.17 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.17 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.15 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.14 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.11 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.1 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.1 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.08 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.08 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.06 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.03 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.03 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.02 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.99 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.95 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.93 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.93 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.92 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.91 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.89 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.85 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.83 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.82 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.82 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.82 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.77 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.73 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.71 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.7 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.69 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.65 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.61 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.61 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.59 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.51 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.5 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.47 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.46 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.43 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.42 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.37 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.3 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.28 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.26 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.24 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.22 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.18 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.17 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.15 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.13 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.13 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.1 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.99 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.97 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.92 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.84 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.8 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.64 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.64 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.63 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.54 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.53 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.48 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.47 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.47 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.43 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.42 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.24 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.96 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.7 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.58 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.49 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.47 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.45 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.1 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.98 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.97 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.9 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.82 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.79 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.78 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.66 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.43 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.33 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.26 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.13 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.83 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.36 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.98 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.98 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.68 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 90.62 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.57 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.55 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.15 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.95 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.39 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.98 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.47 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 88.37 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.33 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 88.02 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.95 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 87.72 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.23 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.03 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.52 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.46 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.46 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.24 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.59 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.25 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 84.95 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.91 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.71 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.54 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 84.5 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 83.58 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 82.71 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.3 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.75 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.38 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.1e-52 Score=381.68 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=171.2
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|..|+++||+++|++ .++ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 4 M~~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 4 MVEVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 72 (239)
T ss_dssp CCCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred cCeEEEEEEEEEECC---EEE---EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceeccc
Confidence 556999999999975 456 566999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
. ...++.++|++|+ +.+++. ++.+|+.++... +..++.+.++++.++++.++|++
T Consensus 73 ~------~~~~r~ig~v~Q~-----------~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------ 128 (239)
T d1v43a3 73 L------PPKDRNISMVFQS-----------YAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEE------ 128 (239)
T ss_dssp S------CGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred C------CcccceEEEEeec-----------hhhcccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChh------
Confidence 1 1112345555554 444444 566777666543 34577888999999999999988
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|++||||||||++||||| ||||++||+ |+|+|+|||
T Consensus 129 -----------~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~ 197 (239)
T d1v43a3 129 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197 (239)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 56999999999999999999999 999999984 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+++.++||||++ |++|+|++.|++++++.+|.+++++.+++
T Consensus 198 ~~a~~~~dri~v-m~~G~iv~~G~~~el~~~P~~~~~~~~lg 238 (239)
T d1v43a3 198 VEAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFIG 238 (239)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence 688999999975 99999999999999999999999887753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-52 Score=382.77 Aligned_cols=212 Identities=14% Similarity=0.216 Sum_probs=176.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|..|+++||+++|+.+. +.+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 M~~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~ 71 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVAS 71 (242)
T ss_dssp CCCEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCEEEEEeEEEEECCCC-EEE---EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeec
Confidence 35699999999996443 456 556999999999999999999999999999999999 999999999999852
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
.. .......++.+||++|+ +.+++. ++++|+.+++.. ...++.+.++++.++++.+||.+
T Consensus 72 ~~-~~~~~~~rr~ig~vfQ~-----------~~L~p~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~------ 132 (242)
T d1oxxk2 72 NG-KLIVPPEDRKIGMVFQT-----------WALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHH------ 132 (242)
T ss_dssp TT-EESSCGGGSCEEEEETT-----------SCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGG------
T ss_pred Cc-hhhcchhhccceEEecc-----------ccccccccHHHHhhhhhHh-hcCCHHHHHHHHHHHHhhcChHh------
Confidence 11 01111113345555554 444444 677788877663 35677888999999999999987
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 279 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-- 279 (347)
+++++|++||||||||++||||| ||||++||+ |+|+|+|||
T Consensus 133 -----------~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~ 201 (242)
T d1oxxk2 133 -----------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (242)
T ss_dssp -----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred -----------hhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 56999999999999999999999 999999985 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
+++.++|||+++ |++|+|++.|++++++.+|.+++++.++
T Consensus 202 ~~~~~~~dri~v-m~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 202 ADIFAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 688899999975 9999999999999999999999988775
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-52 Score=382.12 Aligned_cols=209 Identities=13% Similarity=0.164 Sum_probs=171.6
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+++|+.+. .++| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~~~~~a---l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~ 72 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTL 72 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEE---EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTT
T ss_pred CEEEEeEEEEeCCCCeeEEE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeC
Confidence 689999999996543 3456 555999999999999999999999999999999999 9999999999998622
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...+... .|+.++|++|+. .+++. ++.+|+.++.... ..++++.++++.++|+.+||.+
T Consensus 73 ~~~~~~~-~rr~ig~VfQ~~-----------~l~~~~tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~------- 132 (240)
T d3dhwc1 73 SESELTK-ARRQIGMIFQHF-----------NLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD------- 132 (240)
T ss_dssp CHHHHHH-HHHHEEECCSSC-----------CCCTTSBHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTT-------
T ss_pred Chhhhhh-hhcccccccccc-----------ccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 1111111 123455555554 33333 5666666665433 4566788899999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
.++++|++|||||||||+||||| ||||++||+ |+|+|+||| +
T Consensus 133 ----------~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~ 202 (240)
T d3dhwc1 133 ----------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202 (240)
T ss_dssp ----------TTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 56999999999999999999999 999999984 999999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
.+..+|||+++ |++|+|++.|+++++|.+|.+++++.
T Consensus 203 ~~~~~~dri~v-l~~G~iv~~G~~~ei~~~P~~~~t~~ 239 (240)
T d3dhwc1 203 VVKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQK 239 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEEETTTTTCSSCCTTTTC
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHhCCCChHHcC
Confidence 88899999975 99999999999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.6e-51 Score=378.21 Aligned_cols=211 Identities=12% Similarity=0.151 Sum_probs=174.5
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|+.|+++||+++|++ .++ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 M~~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~ 69 (240)
T d1g2912 1 MAGVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVAD 69 (240)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEE
T ss_pred CCcEEEEeEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecc
Confidence 356999999999975 456 566999999999999999999999999999999999 999999999999752
Q ss_pred CccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
..........++.++|++|+...+..+ ++.+|+.++...+ ..+..+.++++.++++.++|.+
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~L~~~l----------tV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~------- 131 (240)
T d1g2912 70 PEKGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE------- 131 (240)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred cchhhhcccccccceecccchhhcchh----------hhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 111111222244567776665444333 4555555554433 4567888899999999999987
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--h
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 280 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~ 280 (347)
+++++|++||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 132 ----------~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 132 ----------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 56999999999999999999999 999999984 999999999 6
Q ss_pred HHHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHH
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 319 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 319 (347)
++..+|||+++ |++|+|++.|++++++.+|.+++++.|
T Consensus 202 ~~~~~~drv~v-m~~G~iv~~G~~~el~~~P~~~~~~~f 239 (240)
T d1g2912 202 EAMTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGF 239 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHh
Confidence 88999999975 999999999999999999999998776
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-51 Score=374.25 Aligned_cols=202 Identities=12% Similarity=0.181 Sum_probs=140.1
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||+|+|+. .++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~--- 66 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND--- 66 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCTT---
T ss_pred CEEEEEEEEECC---EEE---EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECCC---
Confidence 689999999975 456 666999999999999999999999999999999999 999999999998862
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+.. +++. ++.+|+.++... ...++++.++++.++++.++|.+
T Consensus 67 ---~~~~~r~ig~v~Q~~~-----------l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~--------- 122 (232)
T d2awna2 67 ---TPPAERGVGMVFQSYA-----------LYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAH--------- 122 (232)
T ss_dssp ---SCGGGTCEEEECSSCC-----------C----------------------CHHHHHHHHHHHHC-------------
T ss_pred ---Cchhhceeeeeccccc-----------cccchhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCChh---------
Confidence 1112334566666544 3433 566666665442 23456678889999999999987
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+++++|++||||||||++||||| ||||++||+ |+|+|+||| +++
T Consensus 123 --------~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a 194 (232)
T d2awna2 123 --------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194 (232)
T ss_dssp -------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999984 999999999 689
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
..+|||+++ |++|+|++.|++++++.+|.+++++.++
T Consensus 195 ~~~~dri~v-m~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 195 MTLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEEE-EECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 999999975 9999999999999999999998877664
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.5e-50 Score=373.58 Aligned_cols=220 Identities=16% Similarity=0.126 Sum_probs=175.8
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||+|+|++ .++ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVR 70 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEE
T ss_pred eEEEEEEEEEECC---EEE---EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccCC
Confidence 5899999999975 455 666999999999999999999999999999999999 99999999999986211
Q ss_pred cccccc-cCCCccceeeccccccccchhhhhHhhHH-HHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccc
Q 019048 151 FLQEYT-IPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (347)
Q Consensus 151 ~~~~~~-~~r~~~~~~~~~~~~~~~~v~qn~~~~~~-~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~ 228 (347)
...... ... .......+...++|||++.+++. ++.+|+.++.......+..+.++++.++++.+++.+.
T Consensus 71 ~~~~~~~~~~---~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 141 (258)
T d1b0ua_ 71 DKDGQLKVAD---KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER------ 141 (258)
T ss_dssp CTTSSEEESC---HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH------
T ss_pred ccchhccccc---HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchh------
Confidence 100000 000 00001112234455666555554 6777777765545566778888999999999999863
Q ss_pred eeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hH
Q 019048 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 281 (347)
Q Consensus 229 ~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~ 281 (347)
..+++|.+|||||||||+||||| ||||++||. |+|||+||| +.
T Consensus 142 ----------~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~ 211 (258)
T d1b0ua_ 142 ----------AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 211 (258)
T ss_dssp ----------HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred ----------hhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH
Confidence 24788999999999999999999 999999984 899999999 68
Q ss_pred HHhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHH
Q 019048 282 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 321 (347)
Q Consensus 282 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 321 (347)
+..+||||+| |++|+|+++|++++++.+|.+++++.++.
T Consensus 212 ~~~~adri~v-m~~G~iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 212 ARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHHHh
Confidence 8899999975 99999999999999999999999988874
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.6e-50 Score=364.76 Aligned_cols=200 Identities=13% Similarity=0.214 Sum_probs=165.6
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+++|+. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1 mi~v~nlsk~y~~--~--a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~~-- 66 (229)
T d3d31a2 1 MIEIESLSRKWKN--F--S---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (229)
T ss_dssp CEEEEEEEEECSS--C--E---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC--E--E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEeccc--
Confidence 6899999999974 2 3 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
....++.++|++|+...+..+ ++.+|+.++...... +. ++++.++++.+++.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~~----------tV~enl~~~~~~~~~-~~---~~~~~~~l~~~~l~~--------- 119 (229)
T d3d31a2 67 ----LSPEKHDIAFVYQNYSLFPHM----------NVKKNLEFGMRMKKI-KD---PKRVLDTARDLKIEH--------- 119 (229)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTS----------CHHHHHHHHHHHHCC-CC---HHHHHHHHHHTTCTT---------
T ss_pred ----cchhHhcceeeccccccCccc----------cHHHHHHHHHhhccc-cH---HHHHHHHHHHhcchh---------
Confidence 111133566776666555443 344444444432222 22 357888999999988
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHH
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~ 282 (347)
+++++|.+||||||||++||||| ||||++||+ |+|||+||| +++
T Consensus 120 --------~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~ 191 (229)
T d3d31a2 120 --------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191 (229)
T ss_dssp --------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred --------hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH
Confidence 56999999999999999999999 999999984 899999999 589
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 320 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 320 (347)
..+|||+++ |++|++++.|++++++.+|.+++++.|+
T Consensus 192 ~~~~drv~v-m~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 192 RIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp HHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 999999975 9999999999999999999999887765
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.2e-48 Score=351.43 Aligned_cols=199 Identities=18% Similarity=0.147 Sum_probs=156.3
Q ss_pred cEEEeeeEEEeCCCc-eeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~-~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
||+++||+|+|+.+. .+.+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 1 mI~i~nlsk~y~~~~~~~~a---l~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~ 72 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEeEEEEeCCCCeeEEE---EeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcC
Confidence 689999999996543 3456 555999999999999999999999999999999999 9999999999998732
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhc--cCCChHHHHHHHHHHHHHCCCCccccccc
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~--~~~~~~~~~~~i~~~l~~~gl~~~~~~~~ 227 (347)
...+...+.++.++|++|+...+..+ ++.+|+.++.... ...+..+..+++.++|+.++|.+.
T Consensus 73 ~~~~~~~~r~~~ig~v~Q~~~l~~~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----- 137 (230)
T d1l2ta_ 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (230)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred ChhhcchhhcceEEEEecchhhCcCc----------cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh-----
Confidence 22221122233455666654433332 5556666554432 234567778889999999999764
Q ss_pred ceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-h
Q 019048 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 280 (347)
Q Consensus 228 ~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~ 280 (347)
+++++|++|||||||||+||||| ||||++||+ |+|+|+||| .
T Consensus 138 -----------~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~ 206 (230)
T d1l2ta_ 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (230)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH
Confidence 35899999999999999999999 999999984 899999999 3
Q ss_pred HHHhcccEEEEEeeCCeEeecCCc
Q 019048 281 DLLSLTDRARIRTYLGELLGIPPA 304 (347)
Q Consensus 281 ~~~~~aDri~v~l~~G~iv~~g~~ 304 (347)
.++++|||+++ |++|+|+++|++
T Consensus 207 ~~a~~~drv~~-m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 207 NVARFGERIIY-LKDGEVEREEKL 229 (230)
T ss_dssp HHHTTSSEEEE-EETTEEEEEEEC
T ss_pred HHHHhCCEEEE-EECCEEEEeccC
Confidence 45589999975 999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.3e-48 Score=354.56 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=151.5
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
||+++||+|+|+++..+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mle~knvsf~Y~~~~~v-----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~- 69 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNI- 69 (242)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTT-
T ss_pred CEEEEEEEEECCCCCce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEeccc-
Confidence 68999999999765444 777999999999999999999999999999999999 9999999999998611
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.....|+.++|++|+...| ..++.+|+.++... .. ..+.+.+.++..++.......++.+
T Consensus 70 ---~~~~~r~~i~~v~Q~~~lf-----------~~ti~eNi~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T d1mv5a_ 70 ---SLENWRSQIGFVSQDSAIM-----------AGTIRENLTYGLEG--DY----TDEDLWQVLDLAFARSFVENMPDQL 129 (242)
T ss_dssp ---SCSCCTTTCCEECCSSCCC-----------CEEHHHHTTSCTTS--CS----CHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred ---cHHHHHhheEEEccccccC-----------Ccchhhheeccccc--cc----chhhHHHHHHHHHhhhhhccCcccc
Confidence 0111233455555555444 33455555443221 11 1233445566666655444455555
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
.+.|.+ .+.+||||||||++||||| |||||+||. ++|+|+||| -.....
T Consensus 130 ~~~i~~------~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 130 NTEVGE------RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp GCEEST------TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred cccccC------CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 555443 4678999999999999999 999999984 899999999 344456
Q ss_pred ccEEEEEeeCCeEeecCCcccccCC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
||||++ |++|+|++.|++++++..
T Consensus 204 ~D~i~v-l~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 204 ADKIYF-IEKGQITGSGKHNELVAT 227 (242)
T ss_dssp CSEEEE-EETTEECCCSCHHHHHHH
T ss_pred CCEEEE-EECCEEEEECCHHHHHhC
Confidence 999975 999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-47 Score=352.09 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=155.8
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|+++||+|+|+.+.. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 2 I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~---- 68 (241)
T d2pmka1 2 ITFRNIRFRYKPDSP-VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLA---- 68 (241)
T ss_dssp EEEEEEEEESSTTSC-EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT----
T ss_pred eEEEEEEEEeCCCCc-ce---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEec----
Confidence 789999999964432 34 777999999999999999999999999999999999 99999999999986
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
.+.....+...++|+|++.++..++.+|+.++.. ... .+++.++++..++...+...++++.
T Consensus 69 -----------~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~---~~~----~~~~~~~~~~~~~~~~i~~~~~~~~ 130 (241)
T d2pmka1 69 -----------LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREGYN 130 (241)
T ss_dssp -----------TSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTST---TCC----HHHHHHHHHHHTCHHHHTTSTTGGG
T ss_pred -----------ccchhhhhceEEEEecccccCCccccccccccCc---ccc----HHHHHHHHHHHhhHHHHHhhhcchh
Confidence 2233333444455555555555566677665432 111 2234444555555433322333333
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhcc
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 286 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~a 286 (347)
+. ....+.+||||||||++||||| |||||+||. ++|+|+||| -...+.|
T Consensus 131 t~------i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~ 204 (241)
T d2pmka1 131 TI------VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA 204 (241)
T ss_dssp SB------CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS
T ss_pred hh------cCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhC
Confidence 33 3556789999999999999999 999999984 899999999 3455789
Q ss_pred cEEEEEeeCCeEeecCCcccccCCCCCCCh
Q 019048 287 DRARIRTYLGELLGIPPAKQIFDIPESSDP 316 (347)
Q Consensus 287 Dri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 316 (347)
|||++ |++|+|++.|++++++.++...|.
T Consensus 205 D~i~v-l~~G~Iv~~G~~~ell~~~~~~y~ 233 (241)
T d2pmka1 205 DRIIV-MEKGKIVEQGKHKELLSEPESLYS 233 (241)
T ss_dssp SEEEE-EETTEEEEEECHHHHHHSTTCHHH
T ss_pred CEEEE-EECCEEEEECCHHHHHhCCCCHHH
Confidence 99975 999999999999999998876664
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=5.6e-46 Score=341.90 Aligned_cols=198 Identities=16% Similarity=0.242 Sum_probs=157.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
+.+|+++||+++|++ ..+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 d~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred ceEEEEeeEEEEECC---EEE---EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEeccccccc
Confidence 468999999999975 456 666999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHC-CCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~-gl~~~~~~~ 226 (347)
. +.....+..++|++|+...+..+ |.+|. .++... ...+...++.+.+++..+ ++.+
T Consensus 73 ~---~~~~~~r~gi~~~~q~~~l~~~ltv~en~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~----- 131 (240)
T d1ji0a_ 73 K---PAHVINRMGIALVPEGRRIFPELTVYENL-----------MMGAYN--RKDKEGIKRDLEWIFSLFPRLKE----- 131 (240)
T ss_dssp C---CHHHHHHTTEEEECSSCCCCTTSBHHHHH-----------HGGGTT--CCCSSHHHHHHHHHHHHCHHHHT-----
T ss_pred c---cHHHHHHhcccccCcccccCCcccHHHHH-----------HHHHHh--cCCHHHHHHHHHHHHHHhhChHH-----
Confidence 1 11122234566777776655444 44444 333321 122344555666666665 5655
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
.+++++++||||||||++||||| ||||+|||+ |+|||++||
T Consensus 132 ------------~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l 199 (240)
T d1ji0a_ 132 ------------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp ------------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred ------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999984 899999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
+.+.++|||+++ |++|++++.|+++++++++
T Consensus 200 ~~~~~~~drv~v-l~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 200 LGALKVAHYGYV-LETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEEEHHHHHTCH
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHhcCH
Confidence 688999999975 9999999999999998754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.7e-46 Score=344.16 Aligned_cols=209 Identities=12% Similarity=0.147 Sum_probs=161.4
Q ss_pred CCcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCC
Q 019048 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (347)
Q Consensus 69 ~~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~ 148 (347)
|.+|+++||+++|++ .++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 M~iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~~ 70 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 70 (254)
T ss_dssp CEEEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred cceEEEEEEEEEECC---eEE---EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEeccc
Confidence 568999999999975 456 666999999999999999999999999999999999 999999999999862
Q ss_pred CccccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhh-hhccCCChHHHHHHHHHHHHHCCCCcccccc
Q 019048 149 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (347)
Q Consensus 149 ~~~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~-~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~ 226 (347)
.. .....+..+++++|++..+..+ |.+|+.+............. ............+++.++++.+++.+
T Consensus 71 ~~---~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 142 (254)
T d1g6ha_ 71 KE---PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----- 142 (254)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred hh---HHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-----
Confidence 21 2222233467777777655554 56655442110000000000 00112234566678889999999987
Q ss_pred cceeeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--
Q 019048 227 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 279 (347)
Q Consensus 227 ~~~~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-- 279 (347)
..++++.+||||||||++||||| ||||+|||. |+|||+|||
T Consensus 143 ------------~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl 210 (254)
T d1g6ha_ 143 ------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 210 (254)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred ------------hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 45889999999999999999999 999999984 999999999
Q ss_pred hHHHhcccEEEEEeeCCeEeecCCcccccC
Q 019048 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 309 (347)
Q Consensus 280 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 309 (347)
+++.++||||+| |++|+++++|++++++.
T Consensus 211 ~~~~~~~Drv~v-m~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 211 DIVLNYIDHLYV-MFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp STTGGGCSEEEE-EETTEEEEEEESHHHHH
T ss_pred HHHHHhCCEEEE-EeCCEEEEEecHHHHhh
Confidence 689999999975 99999999999988654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-44 Score=330.97 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=164.2
Q ss_pred EEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCcc
Q 019048 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (347)
Q Consensus 72 l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 151 (347)
|++ ++.++|+. .. + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 l~v-~~~k~~g~---~~----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~~--- 64 (240)
T d2onka1 3 LKV-RAEKRLGN---FR----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP--- 64 (240)
T ss_dssp EEE-EEEEEETT---EE----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT---
T ss_pred EEE-EEEEEECC---EE----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCc---
Confidence 677 57889975 21 3 5999995 68999999999999999999999999 999999999999862
Q ss_pred ccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceee
Q 019048 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 231 (347)
Q Consensus 152 ~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~ 231 (347)
....++.++|++|+...+..+ ++.+|+.+++. ..++.+.++++.++++.+||.+
T Consensus 65 ---~~~~~r~ig~v~Q~~~l~~~l----------tV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~---------- 118 (240)
T d2onka1 65 ---LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLR---NVERVERDRRVREMAEKLGIAH---------- 118 (240)
T ss_dssp ---SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTT----------
T ss_pred ---CCHHHcCceeeccchhhcccc----------hhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHh----------
Confidence 222244566666665433322 56666666653 3456777889999999999988
Q ss_pred eeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec--hHHH
Q 019048 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 283 (347)
Q Consensus 232 ~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH--~~~~ 283 (347)
+++++|.+|||||||||+||||| ||||++||+ |+|+|+||| +++.
T Consensus 119 -------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T d2onka1 119 -------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp -------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 56999999999999999999999 999999984 899999999 6899
Q ss_pred hcccEEEEEeeCCeEeecCCcccccCCCCCCChHHHHHHHH
Q 019048 284 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 324 (347)
Q Consensus 284 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 324 (347)
++|||+++ |++|++++.|+++++++.+ +++++.++...+
T Consensus 192 ~~adri~v-m~~G~ii~~G~~~el~~~~-~~~v~~fl~~~n 230 (240)
T d2onka1 192 MLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARN 230 (240)
T ss_dssp HHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHH
T ss_pred HhCCEEEE-EECCEEEEEecHHHHhcCC-CHHHHHHhCcch
Confidence 99999975 9999999999999999776 567777776543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-46 Score=347.64 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=147.0
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
..|+++||+|+|+......+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 10 g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~-- 79 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLP-- 79 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG--
T ss_pred ceEEEEEEEEECCCCCCCEe---EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecc--
Confidence 45999999999975433345 666999999999999999999999999999999999 99999999999986
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.+.....+...++|+|++.++..++.+|+.++.... ...... .+.....++...+...+++
T Consensus 80 -------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~--~~~~~~----~~~~~~~~~~~~i~~l~~g 140 (251)
T d1jj7a_ 80 -------------QYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK--PTMEEI----TAAAVKSGAHSFISGLPQG 140 (251)
T ss_dssp -------------GBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC--CCHHHH----HHHHHHHTCHHHHHTSTTG
T ss_pred -------------hhhhHHHHHHhhhccccccccCcchhhhhhhhhccc--chHHHH----HHHHHHHHHHHHHHhcccc
Confidence 222333333444455555555445666666553211 111111 1111111221111111111
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC-----------------CCeEEEEec-hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tiIiiTH-~~~ 282 (347)
+.+ ..++.+.+||||||||++||||| ||||++||. ++|+|+||| -..
T Consensus 141 ~~~------~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~ 214 (251)
T d1jj7a_ 141 YDT------EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214 (251)
T ss_dssp GGC------BCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHH
T ss_pred chh------hHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHH
Confidence 111 34677889999999999999999 999999973 789999999 345
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
.+.||||++ |++|+|++.|+++++++.+
T Consensus 215 ~~~aDrI~v-l~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 215 VEQADHILF-LEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHTCSEEEE-EETTEEEEEECHHHHHHHT
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 577999975 9999999999999998753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.6e-46 Score=344.97 Aligned_cols=204 Identities=11% Similarity=0.157 Sum_probs=152.4
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.-|+++||+|+|+.+. ..+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 12 g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~- 81 (253)
T d3b60a1 12 GDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE- 81 (253)
T ss_dssp CCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT-
T ss_pred eEEEEEEEEEEeCCCC-Cce---eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccch-
Confidence 3599999999997543 234 677999999999999999999999999999999999 999999999999861
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
+.....+...++++|++.++..++.+|+.++... .. ..+++.++++..++.+.+...+++
T Consensus 82 --------------~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~--~~----~~~~i~~a~~~~~l~~~i~~l~~g 141 (253)
T d3b60a1 82 --------------YTLASLRNQVALVSQNVHLFNDTVANNIAYARTE--EY----SREQIEEAARMAYAMDFINKMDNG 141 (253)
T ss_dssp --------------BCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS--CC----CHHHHHHHHHTTTCHHHHHHSTTG
T ss_pred --------------hhhhhhhheEEEEeeccccCCcchhhhhhhcCcc--cC----CHHHHHHHHHHHhHHHHHHhcccc
Confidence 2222233333344444444444444555443210 11 134455666666665544344444
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~ 284 (347)
+.+.+ .+.+.+||||||||++||||| |||||+||. ++|+|+||| -....
T Consensus 142 l~t~~------~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~ 215 (253)
T d3b60a1 142 LDTII------GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 215 (253)
T ss_dssp GGSBC------CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT
T ss_pred chhhh------cCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH
Confidence 44443 456789999999999999999 999999984 899999999 34557
Q ss_pred cccEEEEEeeCCeEeecCCcccccCC
Q 019048 285 LTDRARIRTYLGELLGIPPAKQIFDI 310 (347)
Q Consensus 285 ~aDri~v~l~~G~iv~~g~~~~l~~~ 310 (347)
.||||++ |++|+|++.|++++++.+
T Consensus 216 ~~D~v~v-l~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 216 QADEIVV-VEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred hCCEEEE-EECCEEEEECCHHHHHhC
Confidence 8999975 999999999999999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.9e-46 Score=344.90 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=161.0
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
-|+++||+|+|+++. ..+ |+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 16 ~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~--- 83 (255)
T d2hyda1 16 RIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIK--- 83 (255)
T ss_dssp CEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGG---
T ss_pred EEEEEEEEEEeCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEcc---
Confidence 499999999997543 234 777999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCccccccccee
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 230 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~ 230 (347)
.+.....+...++|+|++.++..++.+|+.++.. .. ..+++.++++.+++.+.+...++++
T Consensus 84 ------------~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~---~~----~~~~~~~al~~~~l~~~i~~lp~gl 144 (255)
T d2hyda1 84 ------------DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP---TA----TDEEVVEAAKMANAHDFIMNLPQGY 144 (255)
T ss_dssp ------------GSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS---SC----CHHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred ------------cCCHHHhhheeeeeeccccCCCCCHHHHHhccCc---CC----CHHHHHHHHHHhCCHHHHHhccccc
Confidence 2233334444445555555555566677665532 11 1345667888888877666667777
Q ss_pred eeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC---------------CCeEEEEec-hHHHhc
Q 019048 231 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 285 (347)
Q Consensus 231 ~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tiIiiTH-~~~~~~ 285 (347)
.+.+.+. +.+||||||||++||||| ||||++||. ++|+|+||| -.....
T Consensus 145 ~t~i~~~------g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~ 218 (255)
T d2hyda1 145 DTEVGER------GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 218 (255)
T ss_dssp GCBCCGG------GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred cchhcCC------CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 6666554 558999999999999999 999999984 899999999 355678
Q ss_pred ccEEEEEeeCCeEeecCCcccccCCC
Q 019048 286 TDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 286 aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
||||++ |++|+|++.|+++++++.+
T Consensus 219 ~D~ii~-l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 219 ADKIVV-IENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp CSEEEE-EETTEEEEEECHHHHHHTT
T ss_pred CCEEEE-EECCEEEEECCHHHHHhCC
Confidence 999975 9999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-44 Score=331.69 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=168.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||+++|+. .++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 aI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~~- 69 (238)
T d1vpla_ 2 AVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEE- 69 (238)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTC-
T ss_pred CEEEEeEEEEECC---EEE---EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEecccC-
Confidence 3889999999976 345 666999999999999999999999999999999999 9999999999998521
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
....++.++|++|+...+..+ +.||+.++... ...+..+.++.++++++.+++.+
T Consensus 70 ----~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~------------~~~~~~~~~~~~~~~l~~~~l~~-------- 125 (238)
T d1vpla_ 70 ----PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF------------YASSSSEIEEMVERATEIAGLGE-------- 125 (238)
T ss_dssp ----HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH------------HCCCHHHHHHHHHHHHHHHCCGG--------
T ss_pred ----hHHHHhhEeEeeeccccCCCccHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHhCCCHH--------
Confidence 111244678999887666655 66666554321 13446777888999999999987
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEec--hHH
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 282 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH--~~~ 282 (347)
..++++.+||||||||++||||| ||||+|||. |+|||++|| +++
T Consensus 126 ---------~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~ 196 (238)
T d1vpla_ 126 ---------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196 (238)
T ss_dssp ---------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ---------HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999984 899999999 689
Q ss_pred HhcccEEEEEeeCCeEeecCCcccccCCCCCCChHH
Q 019048 283 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 318 (347)
Q Consensus 283 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 318 (347)
..+|||+++ |++|++++.|+++++...+.....+.
T Consensus 197 ~~~~drv~v-l~~G~iv~~g~~~el~~~~~~~~~~~ 231 (238)
T d1vpla_ 197 EFLCDRIAL-IHNGTIVETGTVEELKERYKAQNIEE 231 (238)
T ss_dssp TTTCSEEEE-EETTEEEEEEEHHHHHHHTTCSSHHH
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhccCCchHHH
Confidence 999999975 99999999999999987766655443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.3e-41 Score=305.33 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=141.6
Q ss_pred CcEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCC
Q 019048 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (347)
Q Consensus 70 ~~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 149 (347)
.+|+++||+++| . |++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...
T Consensus 2 ~il~~~dv~~~~-----~-----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~i~~~ 65 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQPLEAW 65 (231)
T ss_dssp EEEEEEEECCTT-----T-----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSBGGGS
T ss_pred eEEEEECcccCc-----e-----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEECCcC
Confidence 368999997654 2 67799999999999999999999999999999975 5789999999987521
Q ss_pred ccccccccCCCccceeeccccccccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 150 ~~~~~~~~~r~~~~~~~~~~~~~~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
. ... + +...++..+........ ++.+++.++.. .....+.+.++++.+++.+
T Consensus 66 ~-~~~--~-~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~------~~~~~~~~~~~~~~~~l~~-------- 117 (231)
T d1l7vc_ 66 S-ATK--L-ALHRAYLSQQQTPPFAT----------PVWHYLTLHQH------DKTRTELLNDVAGALALDD-------- 117 (231)
T ss_dssp C-HHH--H-HHHEEEECSCCCCCSSC----------BHHHHHHHHCS------CTTCHHHHHHHHHHTTCTT--------
T ss_pred C-HHH--H-HhhceeeeccccCCccc----------cHHHHhhhccc------hhhHHHHHHHHHHhcCCHh--------
Confidence 1 111 1 01123444432211111 11222222111 1223456788899999988
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh----------------chhccCCCC----------------CCeEEEE
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 277 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tiIii 277 (347)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 118 ---------~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~v 188 (231)
T d1l7vc_ 118 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMS 188 (231)
T ss_dssp ---------TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred ---------HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45899999999999999999974 999999984 9999999
Q ss_pred ec--hHHHhcccEEEEEeeCCeEeecCCcccccCCC
Q 019048 278 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (347)
Q Consensus 278 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 311 (347)
|| +.+..+|||+++ |++|++++.|++++++..|
T Consensus 189 tHdl~~~~~~~dri~v-l~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 189 SHDLNHTLRHAHRAWL-LKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CCCHHHHHHHCSBCCB-EETTEECCCSBHHHHSCHH
T ss_pred eCCHHHHHHHCCEEEE-EECCEEEEECCHHHHhCCh
Confidence 99 689999999975 9999999999999998754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.4e-39 Score=300.97 Aligned_cols=169 Identities=17% Similarity=0.148 Sum_probs=127.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCccccccccCCCccceeecccccc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 172 (347)
|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+ ++|++|+...+
T Consensus 52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~-----------------i~~v~Q~~~l~ 109 (281)
T d1r0wa_ 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSGR-----------------VSFCSQFSWIM 109 (281)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCSC-----------------EEEECSSCCCC
T ss_pred EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECCE-----------------EEEEecccccc
Confidence 777999999999999999999999999999999999 99999999983 36777776655
Q ss_pred ccchhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccceeeeeechhhhhccCCCCCCHHHH
Q 019048 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (347)
Q Consensus 173 ~~~v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~~~~vvd~~~~~~~~~~~LSgGqr 252 (347)
.+.+.+|+ .++.. ... .....+++.+++...+...++...++ ..+.+.+||||||
T Consensus 110 ~~tv~eni-----------~~~~~----~~~----~~~~~~~~~~~~~~~i~~l~~~~~~~------~~~~~~~LSgGqk 164 (281)
T d1r0wa_ 110 PGTIKENI-----------IFGVS----YDE----YRYKSVVKACQLQQDITKFAEQDNTV------LGEGGVTLSGGQR 164 (281)
T ss_dssp SEEHHHHH-----------TTTSC----CCH----HHHHHHHHHTTCHHHHTTSTTGGGCE------ECTTCTTSCHHHH
T ss_pred Cceeeccc-----------ccccc----ccc----hHHHHHHHHHHhHHHHHhchhhhhhh------hhhhccCCCHHHH
Confidence 54455554 33321 111 12233444444433222222333332 3455778999999
Q ss_pred HHHHHHHHh---------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEEeeCCeEeecCCccc
Q 019048 253 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 306 (347)
Q Consensus 253 QRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 306 (347)
||++||||| ||||++||. ++|+|+||| ....++||||++ |++|++++.|++++
T Consensus 165 QRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~v-l~~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 165 ARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI-LHQGSSYFYGTFSE 243 (281)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEE-EETTEEEEEECHHH
T ss_pred HHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 999999999 999999873 899999999 455678999975 99999999999999
Q ss_pred ccC
Q 019048 307 IFD 309 (347)
Q Consensus 307 l~~ 309 (347)
++.
T Consensus 244 L~~ 246 (281)
T d1r0wa_ 244 LQS 246 (281)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-35 Score=265.69 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=122.4
Q ss_pred cEEEeeeEEEeCCCceeeecCCceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeCCCCc
Q 019048 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (347)
Q Consensus 71 ~l~i~nl~~~y~~~~~~~~l~~L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 150 (347)
.|+++||++.|+. .+ |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~lev~~ls~~y~~--~v-----l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~~-- 67 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK-- 67 (200)
T ss_dssp EEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG--
T ss_pred eEEEEEEEEEeCC--eE-----EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehhH--
Confidence 5899999999953 34 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCccceeeccccccccc-hhhhhHhhHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHCCCCcccccccce
Q 019048 151 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (347)
Q Consensus 151 ~~~~~~~~r~~~~~~~~~~~~~~~~-v~qn~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~~~~~~~ 229 (347)
.+..++|.+++......+ +.+++..... .. ... ..++++.++++.+++.+
T Consensus 68 -------~~~~i~~~~~~~~~~~~~t~~~~l~~~~~-----------~~-~~~--~~~~~~~~~l~~~~~~~-------- 118 (200)
T d1sgwa_ 68 -------VKGKIFFLPEEIIVPRKISVEDYLKAVAS-----------LY-GVK--VNKNEIMDALESVEVLD-------- 118 (200)
T ss_dssp -------GGGGEEEECSSCCCCTTSBHHHHHHHHHH-----------HT-TCC--CCHHHHHHHHHHTTCCC--------
T ss_pred -------hcCcEEEEeecccCCCCcCHHHHHHHHHH-----------hc-CCc--cCHHHHHHHHHHcCCcc--------
Confidence 122345666655433333 3443332211 11 111 11244667788888765
Q ss_pred eeeeechhhhhccCCCCCCHHHHHHHHHHHHh---------chhccCCCC----------------CCeEEEEechHHHh
Q 019048 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLS 284 (347)
Q Consensus 230 ~~~vvd~~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tiIiiTH~~~~~ 284 (347)
+++++.+||||||||++||||| ||||++||. +.++|+++|.+ ..
T Consensus 119 ----------~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l~ 187 (200)
T d1sgwa_ 119 ----------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LS 187 (200)
T ss_dssp ----------TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CT
T ss_pred ----------cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech-hh
Confidence 2566789999999999999999 999999985 22333333322 25
Q ss_pred cccEEEEEeeC
Q 019048 285 LTDRARIRTYL 295 (347)
Q Consensus 285 ~aDri~v~l~~ 295 (347)
+||++.+ |++
T Consensus 188 ~~D~~~~-l~~ 197 (200)
T d1sgwa_ 188 YCDVNEN-LHK 197 (200)
T ss_dssp TSSEEEE-GGG
T ss_pred hcchhhh-eee
Confidence 7999964 754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=1.8e-15 Score=128.62 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=33.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
.++|+||||||||||+++|+|.++ +..|.+...+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~-----~~~g~~~~~~~~~ 38 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC-----CCcceEEECCcch
Confidence 489999999999999999999999 9999999887654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=8.4e-08 Score=87.17 Aligned_cols=54 Identities=15% Similarity=0.020 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------chhccCCCC---------------CCeEEEEec-hHHHhcccEEEE-E
Q 019048 243 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI-R 292 (347)
Q Consensus 243 ~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tiIiiTH-~~~~~~aDri~v-~ 292 (347)
....+|+|||+...++..+ |||-++|++ +..+|++|| ..+...+|+++. .
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEE
Confidence 3457999999998887765 999999863 778999999 677778898854 3
Q ss_pred eeCC
Q 019048 293 TYLG 296 (347)
Q Consensus 293 l~~G 296 (347)
+.+|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EeCC
Confidence 5555
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=8.3e-07 Score=73.84 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.8
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++.+|++.+| +++|+|||||||||++.+|.-++
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 66688888877 89999999999999999998655
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.1e-05 Score=65.86 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++|||||||++.|..-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998776
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=1.4e-05 Score=67.09 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.6
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987664
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.59 E-value=1.6e-05 Score=64.89 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|-++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998775
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=2.5e-05 Score=72.77 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------chhccCCCC----------------CCeEEEEec-hHHHhcccEEEEE
Q 019048 243 MEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIR 292 (347)
Q Consensus 243 ~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tiIiiTH-~~~~~~aDri~v~ 292 (347)
....||||||.++++|-.+ |||+++||+ +..+|+||| ..++..||+.+.|
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 3467899999999888654 999999873 456999999 7899999998653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.56 E-value=1.7e-05 Score=64.95 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.|.+++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999987654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=2.3e-05 Score=68.90 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
+|.+.+++|+||+|||||+|.|.+-.. ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCcc
Confidence 588999999999999999999987655 4456664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=2.5e-05 Score=63.79 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999998764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=2.1e-05 Score=64.36 Aligned_cols=24 Identities=38% Similarity=0.822 Sum_probs=22.5
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||+|||||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999997
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.44 E-value=3.2e-05 Score=63.15 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|+||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.38 E-value=4.1e-05 Score=62.98 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|++|||||||++.|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999888776
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.35 E-value=4.8e-05 Score=62.11 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|-.++|.||+||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999987654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.34 E-value=5.3e-05 Score=61.64 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.31 E-value=4.2e-05 Score=63.62 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++||-|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999998876
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=4.2e-05 Score=63.67 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|-++.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998775
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.27 E-value=6.6e-05 Score=60.67 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.3
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=5.9e-05 Score=60.20 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.26 E-value=6.9e-05 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++.|.|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.25 E-value=2.7e-05 Score=68.79 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEE
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~ 140 (347)
+|...+++|+||+|||||+|.|.+-.. ...|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhcccc
Confidence 577889999999999999999998655 4557665
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.22 E-value=8.3e-05 Score=60.83 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998876
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=8.4e-05 Score=64.07 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.++.|+||||||||||++.|..-++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999877654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00011 Score=68.34 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=23.7
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++++..+.+.+|+|||||||||++.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4555655699999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.18 E-value=7.8e-05 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|+||+||||||+.+.|+--+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999986553
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=8.7e-05 Score=62.39 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.+||+|++|+|||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00014 Score=61.96 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++||.|++|||||||.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00016 Score=59.37 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+++|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.98 E-value=0.00019 Score=59.95 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=23.6
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
|+|-.+.|+||.||||||+.+.|+.-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 577889999999999999999998544
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.00017 Score=59.16 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|+.|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00018 Score=57.19 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.97 E-value=0.00012 Score=60.96 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhhcc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+||+|++++|||||+|.|.|-.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999997743
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00019 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
|=.++|+|+.|+|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.96 E-value=0.00015 Score=59.83 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.95 E-value=0.00019 Score=59.31 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+++|+|++|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999975
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00018 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+||||||||||++.|..-++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.0002 Score=59.31 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred CeEEEEECCCCChHHHHHHHHhhc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+=.+||+|++|+|||||++.|.|-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 446899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.94 E-value=0.0002 Score=57.08 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|||||||++.|.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.0002 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.93 E-value=0.00027 Score=60.65 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.93 E-value=0.00022 Score=59.76 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.+++|+||.||||||+.+.|+.-+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.90 E-value=0.00023 Score=57.13 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|||.+|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.90 E-value=0.00019 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.-.++|||++|||||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33478899999999999999997743
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00025 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.|+||||||||||++.|..-.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999886554
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.85 E-value=0.00023 Score=60.07 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+||||||||||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999877654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00031 Score=58.96 Aligned_cols=27 Identities=19% Similarity=0.551 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+-.++.|+||.||||||+.+.|+.-+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999987553
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.82 E-value=0.00025 Score=58.09 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999988764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00034 Score=57.76 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=25.2
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
=|++|+++.|.||+|||||||+-.++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999988776543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.79 E-value=0.00027 Score=57.89 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999999886
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.78 E-value=0.00019 Score=59.40 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHhhcc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+||+|.+|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.00028 Score=59.32 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=24.4
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++++.++.|+||.||||||+.+.|+.-+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.73 E-value=0.0003 Score=57.88 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+|++||||||+.+.|+.-+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999987664
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00039 Score=58.07 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.|+||.||||||..+.|+.-+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998655
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00019 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.-.++|+|++++|||||+|.|.+-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998753
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.69 E-value=0.0004 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 477999999999999999987653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.67 E-value=0.0003 Score=58.75 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 477999999999999999986553
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.67 E-value=0.0004 Score=58.12 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++++|.+|||||||++.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998775
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.67 E-value=0.00048 Score=57.22 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhhcc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+||+|+.+||||||+|.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.00039 Score=56.88 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|+|++||||||+.+.|+.-+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999997764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.61 E-value=0.00049 Score=55.79 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|+.|||||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 578999999999999999987543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00049 Score=62.94 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++||-|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.57 E-value=0.00052 Score=58.32 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|-||+||||||+.+.|+.-+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999997553
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.56 E-value=0.00055 Score=59.55 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|||||||++.|++-+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999775
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.55 E-value=0.00019 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||+|.|.|--
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.54 E-value=0.00057 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999997664
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.54 E-value=0.0005 Score=57.37 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
++||.|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.53 E-value=0.00058 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.-+++|-|+.||||||+++.|...+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987664
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.52 E-value=0.00066 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.8
Q ss_pred cCCeEEEEECCCCChHHHHHHHHh
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++-+++.++|++||||||+++.+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999775
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.00053 Score=63.05 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=27.8
Q ss_pred CeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEE
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 141 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~ 141 (347)
+..+.|.|+.|||||||+++|.+.++ +..=-|.+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~-----~~~rivti 199 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISI 199 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEE
T ss_pred CCCEEEEeeccccchHHHHHHhhhcc-----cccceeec
Confidence 34489999999999999999999998 65544555
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.50 E-value=0.00054 Score=60.68 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++|+|.+|+|||||+|.|.|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00062 Score=57.39 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|.||.||||||+.+.|+.-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999986553
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00053 Score=58.78 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998775
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00081 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999986654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.001 Score=58.26 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=22.2
Q ss_pred EEec-CCeEEEEECCCCChHHHHHHHHhh
Q 019048 98 YDVP-KTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 98 l~i~-~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+.+. .+.++.|.|||.|||||++|.++-
T Consensus 35 i~l~~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 35 LNLSPQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred EEECCCceEEEEeccCchhhHHHHHHHHH
Confidence 3443 346889999999999999999863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.00073 Score=55.70 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999986553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.38 E-value=0.00091 Score=54.40 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
+.-.++|+|..|||||||++.|.+-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999998873
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.31 E-value=0.00099 Score=54.04 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|||||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998865
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.00088 Score=56.44 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
.++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.0026 Score=53.06 Aligned_cols=20 Identities=60% Similarity=0.845 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++|+|+.|||||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.27 E-value=0.0012 Score=56.66 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.7
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEeC
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 146 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~i 146 (347)
++|-++-|.|.+|||||||.+.|..-+... ...-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~---~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh---cCceEEEEcchHH
Confidence 578899999999999999999998654300 1124577887654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0011 Score=54.02 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.24 E-value=0.001 Score=56.47 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
++||.|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.21 E-value=0.0012 Score=55.53 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-.++|+||.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0036 Score=50.73 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0012 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.6
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|.++.|.||+|||||||+-.++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999999977653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0012 Score=57.07 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+||||++++|+.-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999998665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0011 Score=56.11 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998775
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0012 Score=53.74 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0013 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998655
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0013 Score=56.29 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++|-+++|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999998775
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.13 E-value=0.0018 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.+++++||+||||||.+==|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999988766676665
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.0014 Score=53.46 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.11 E-value=0.0013 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||+|+||||++++|+.-+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998664
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.10 E-value=0.0011 Score=53.98 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|||||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998865
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.10 E-value=0.002 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=22.1
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++++.. +++.|.|||.+||||++|.+.
T Consensus 30 di~~~~-~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMAH-ELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESS-CEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeCC-cEEEEECCCccccchhhhhhH
Confidence 444543 588999999999999999875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0015 Score=56.08 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+.||+|+||||++++|+.-+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 67999999999999999998876
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0013 Score=60.54 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-++||+||.|||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987776
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.0016 Score=52.79 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0016 Score=53.33 Aligned_cols=21 Identities=43% Similarity=0.838 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|||||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.0017 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+||+|.+|+|||||+|.|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 379999999999999999998643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.0014 Score=59.58 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.++||+|||||+|+|+|+..+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHhhccc
Confidence 456899999999999999998765
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0017 Score=55.20 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
++||+|..||||||+++.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.96 E-value=0.0016 Score=55.95 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+..+.|.||.|+|||||++.++.-..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 45788999999999999998875543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0019 Score=52.45 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0021 Score=54.85 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.4
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
=|++|.++.|.||+|||||||.-.++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999887764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.95 E-value=0.0017 Score=55.94 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.+.||.|+||||++++|++-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999998765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0017 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHhhcc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.|.||+|+||||++++|+.-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999865
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0019 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0026 Score=54.47 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.+++|=|+-||||||+++.|..-+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999998776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0018 Score=52.56 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.92 E-value=0.00084 Score=60.76 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++||.|+|||||||+.+.|..++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998886
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.91 E-value=0.0019 Score=55.75 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++||+|..+||||||++.|.+-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.89 E-value=0.0021 Score=53.04 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998774
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0021 Score=52.52 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|++|||||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0022 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0026 Score=52.62 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=23.7
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
.+.|+|.+|+|||||++.+. +.... .||-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~--~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQ--DPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSC--CCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCC--CCeee
Confidence 57899999999999999994 44433 27888
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0021 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.002 Score=52.09 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0021 Score=52.42 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.82 E-value=0.0024 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.5
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHh
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
+++|.++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999977553
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0027 Score=52.25 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++|.+++|-|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 347899999999999999999999987765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0025 Score=51.91 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 378999999999999999987543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.78 E-value=0.0026 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
+++|+++.|.|++|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0022 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.77 E-value=0.0036 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.3
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||.|+||||+++.|+..+.
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999886
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0026 Score=51.51 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.0027 Score=51.48 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.73 E-value=0.0026 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHH
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L 123 (347)
+++|+++.|.|++|+|||||+--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.0028 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++|+|..|+|||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.70 E-value=0.0027 Score=54.29 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.7
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+++|.++.|.|++|||||||+.-++--.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987776544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.69 E-value=0.0024 Score=56.07 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.|.||.|||||+|+++|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 467999999999999999998654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0029 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.+++++||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999987766676665
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0031 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||+|||||+|++.|+..+.
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCccHHHHHHHHHcC
Confidence 67999999999999999998765
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.003 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.61 E-value=0.0027 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++|-|.-||||||+++.|..-+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998775
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0032 Score=51.40 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.8
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++|+|++|||||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.61 E-value=0.0018 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=19.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
-.++|+|++|||||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0031 Score=51.64 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.59 E-value=0.0032 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...+++++||+|+||||.+-=|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999988777776665
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.003 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0035 Score=51.22 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 378999999999999999987543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0037 Score=50.82 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|||+.|+|||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.50 E-value=0.0041 Score=56.86 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.9
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-+++|.||.|||||||+..|...+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999987654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0037 Score=51.49 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0034 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.46 E-value=0.0038 Score=54.67 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=26.5
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHhh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
|+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 333433478999999999999999999887764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0034 Score=51.10 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0032 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||+|+||||++++|+.-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999987664
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.43 E-value=0.0034 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||.|||||+|+++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 67999999999999999997654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0036 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.|.||+|||||+|+++|++.+.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcchhHHHHHHHHhC
Confidence 377999999999999999998775
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.004 Score=50.55 Aligned_cols=21 Identities=52% Similarity=0.713 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.0034 Score=54.13 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=22.3
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.=.+-.++++|||+|+||||.+==|+..+.
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334556899999999999987655555444
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.30 E-value=0.0074 Score=50.46 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.6
Q ss_pred ceeeEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 93 L~~isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
++..-+.+ .|.-+.|.|+||+|||||.-.|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 33366667 77889999999999999986654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.0048 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|..|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 467999999999999998765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.26 E-value=0.0038 Score=59.56 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.+|||+|||||-|+|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999999885
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.24 E-value=0.0037 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.2
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
=.+.|+|++|+|||||++.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.22 E-value=0.0079 Score=49.00 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.8
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCcE
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 138 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~ 138 (347)
.+.|||..|+|||||++.+..-.- |+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCccE
Confidence 578999999999999998876555 66664
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0051 Score=49.88 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0031 Score=51.44 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=17.7
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|+.|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.18 E-value=0.0031 Score=51.43 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=8.9
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|||||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.17 E-value=0.0053 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0038 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHhhcc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
+.|.||.|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0046 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|.||.|+||||++++|+.-+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 56999999999999999998654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.16 E-value=0.0052 Score=52.86 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=17.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.-.++++|||+|+||||.+==|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999987666666555
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.15 E-value=0.0048 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886554
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.13 E-value=0.0048 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=22.7
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++| +.|.||+|||||+|+++++....
T Consensus 37 ~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 37 PPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 3455 77999999999999999998664
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.13 E-value=0.0067 Score=56.95 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++-.+.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3456899999999999999999988765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.10 E-value=0.0053 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0058 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0055 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999988653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.99 E-value=0.012 Score=49.11 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.2
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
.-+++ .|.=++|.|+||+|||||+-.|.
T Consensus 8 ~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 8 VLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 55555 67789999999999999886654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0067 Score=49.91 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++++|..|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999997765
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.92 E-value=0.0065 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEEECCCCChHHHHHHHHhh
Q 019048 104 TSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.84 E-value=0.0043 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999998775
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.80 E-value=0.0069 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.8
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0071 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHhh
Q 019048 105 SLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~g 125 (347)
.++|+|..|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.64 E-value=0.0045 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.|+||.|+|||||+|.|.++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.009 Score=54.15 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..+.++||+|+|||.|++.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3578999999999999999999875
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.63 E-value=0.0064 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.54 E-value=0.0092 Score=50.91 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
.+.|+|.+|+|||||++.+..-. +.||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~----~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILH----VVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----cCCCCC
Confidence 57899999999999999875322 237777
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.53 E-value=0.009 Score=55.37 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=27.6
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.++++..+.+.||.|+|||||.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 458888999999999999999999999886
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.50 E-value=0.0077 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+++||.-+||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0077 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHhhcc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
-+++|+||-++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999855
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.47 E-value=0.013 Score=47.93 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCCCCCCCCc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G 137 (347)
.+.|+|..|+|||||++.+..-.-. ..||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSS--CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCceee
Confidence 4789999999999999998654432 236666
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.0078 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+||||...||||||+|+|+|.-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC
Confidence 389999999999999999988644
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.0098 Score=53.46 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.5
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999987554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.01 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
.+|+++.|.|++|+|||||+-.|+--+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 359999999999999999998776543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.012 Score=52.05 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=31.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g~~ 145 (347)
=|+.|.++-|.||+|||||||+-.++.-... +..--++++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~----~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEEcccc
Confidence 5789999999999999999998777665541 333346666543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.24 E-value=0.0095 Score=53.31 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc-CCC---C---CCCCcEEEECC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE-NDK---F---ASERAQVTYNS 143 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~-~~~---~---~p~~G~I~~~g 143 (347)
.+||||...||||||+++|++.-. .-. | .|..|.|.+.+
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 489999999999999999997632 111 1 24568877654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.23 E-value=0.02 Score=47.37 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 96 isl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
.-+.+ .|.=+.|.|+||+|||||.-.|.
T Consensus 9 ~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 44444 67789999999999999885443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.03 E-value=0.013 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhhc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-+||+|..+||||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999643
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.014 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+++|=|+-||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.70 E-value=0.021 Score=50.67 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=30.9
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcE-EEECCEe
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-VTYNSSV 145 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~-I~~~g~~ 145 (347)
=++.|.++-|.||+|||||||+-.++.... ...|. |++|.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q-----~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH-----HTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh-----cCCCEEEEEECCc
Confidence 589999999999999999999766655444 23344 5666543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.58 E-value=0.022 Score=47.78 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+|.=.+||+|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 3444589999999999999999998654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.49 E-value=0.02 Score=50.71 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhcccCCCCCCCCc-EEEECCE
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSS 144 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G-~I~~~g~ 144 (347)
=|+.|.++-|.||+|||||||+-.++...+ -..| -+++|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq-----k~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ-----KAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH-----hCCCEEEEEECC
Confidence 478999999999999999999988887665 2234 4566553
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.47 E-value=0.016 Score=51.40 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
.+||+|+.|||||||+.+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.45 E-value=0.02 Score=50.57 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=28.0
Q ss_pred EEEEECCCCChHHHHHHHHhhcccCC------CCCCCCcEEEECC
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFEND------KFASERAQVTYNS 143 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~~~------~~~p~~G~I~~~g 143 (347)
.+||||-..+|||||+++|++.-... .-.|.-|.|.+.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 58999999999999999999654321 1125568876654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.10 E-value=0.02 Score=51.02 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
-+||+|+.|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.025 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEEECCCCChHHHHHHH-Hhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNR-ISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~-L~gl~~ 128 (347)
..+.|+|++|||||++++. |..++.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 3589999999999999864 445555
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.019 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl 126 (347)
-++.|.|.=|||||||++-|..-
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 36789999999999999988763
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.90 E-value=0.03 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred CeEEEEECCCCChHHHHHHHHhh
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~g 125 (347)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.025 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.+.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478999999999999999998775
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.025 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 367899999999999999988775
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.78 E-value=0.025 Score=52.23 Aligned_cols=28 Identities=39% Similarity=0.806 Sum_probs=22.8
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++++- +.++||+|||||-|.|.|+.++.
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 44554 55789999999999999998764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.66 E-value=0.03 Score=50.95 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.3
Q ss_pred EEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 98 l~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
...++| ++.++||.|||||.|.+.|++-..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 345555 566789999999999999999764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.43 E-value=0.033 Score=50.32 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=26.8
Q ss_pred eEEEEECCCCChHHHHHHHHhhcccCCCCCCCCcEEEECC
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~~~~~~p~~G~I~~~g 143 (347)
-.+.++||+|+|||.|++.|+..+-. ....-+.++.
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~----~~~~~~~~~~ 89 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFD----TEEAMIRIDM 89 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS----SGGGEEEECT
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcC----CCcceEEEec
Confidence 35779999999999999999998741 2334555654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.33 E-value=0.035 Score=49.35 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.0
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl 126 (347)
=+.+-+|+..+|+|++|+|||||+..|+.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 458889999999999999999997777654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.26 E-value=0.036 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+||+|.-++|||||++.|.++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 379999999999999999988654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.13 E-value=0.035 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+-|.||+|||||-|+++++.-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 56999999999999999987665
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.83 E-value=0.074 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
++.|=|+-||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999999876
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.049 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.||||+|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999998775
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.058 Score=45.45 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+.||||+|+|||+++.-|+..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 467999999999999999998775
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.98 E-value=0.036 Score=42.12 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred ecCCeEEEEECCCCChHHHHH-HHHhhcc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLV-NRISKVF 127 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLl-k~L~gl~ 127 (347)
+++|+.+.|.+|.|||||+.+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999544 4444433
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.68 E-value=0.069 Score=45.61 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhh
Q 019048 106 LLLIGPKGSGKSSLVNRISK 125 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~g 125 (347)
++++|.-.+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999953
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=90.62 E-value=0.08 Score=48.10 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-.++|=|+-||||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987665
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.57 E-value=0.058 Score=45.85 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
-++++|..++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 47999999999999999884
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.55 E-value=0.075 Score=46.58 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+-.++|||-..+|||||+|.|.|-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 445699999999999999999998554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.15 E-value=0.079 Score=44.87 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=26.5
Q ss_pred ecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
+++--.+.|.||.++|||+|+.+|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 57778999999999999999999999986
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.95 E-value=0.069 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHhhccc
Q 019048 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 104 e~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
-+++|=|+-||||||+++.|...+.
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999998776
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.39 E-value=0.069 Score=47.38 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.4
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
=+.|-+|+.++|+|++|+|||+|+..+.--..
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 45889999999999999999999976544333
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.98 E-value=0.11 Score=45.61 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.7
Q ss_pred EecCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 99 ~i~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..++--.+.|.||.++|||||+++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456777899999999999999999999885
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.47 E-value=0.1 Score=44.94 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHh
Q 019048 105 SLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 105 ~~aIvGpnGsGKSTLlk~L~ 124 (347)
-++|+|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999885
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.18 Score=39.06 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++|=.+-+.|-+|||||||.++|.--+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 467788899999999999999995544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.33 E-value=0.1 Score=40.09 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=16.8
Q ss_pred CCeEEEEECCCCChHHHHHHH
Q 019048 102 KTTSLLLIGPKGSGKSSLVNR 122 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~ 122 (347)
..+...|++|.|||||+++-.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~ 27 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPA 27 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 346678899999999998743
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=88.02 E-value=0.077 Score=46.09 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=22.3
Q ss_pred ecCCeEEEEECCCCChHHH--HHHHHhhccc
Q 019048 100 VPKTTSLLLIGPKGSGKSS--LVNRISKVFE 128 (347)
Q Consensus 100 i~~Ge~~aIvGpnGsGKST--Llk~L~gl~~ 128 (347)
+.+|+.+.|.+|+|||||+ |..++....+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~ 36 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK 36 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999996 3455555444
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.95 E-value=0.07 Score=47.53 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.3
Q ss_pred EEEecCCeEEEEECCCCChHHHHHHHHh
Q 019048 97 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 97 sl~i~~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 4588999999999999999999976444
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.23 E-value=0.11 Score=44.99 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.6
Q ss_pred EEEECCCCChHHHHHHHHh
Q 019048 106 LLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~ 124 (347)
++|+|..++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7899999999999999993
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.03 E-value=0.14 Score=46.03 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.8
Q ss_pred cCCeEEEEECCCCChHHHHH
Q 019048 101 PKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLl 120 (347)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999975
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.52 E-value=0.14 Score=46.07 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.1
Q ss_pred CCeEEEEECCCCChHHHHH
Q 019048 102 KTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLl 120 (347)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999965
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.46 E-value=0.22 Score=41.49 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+-.+.+.||+|+||||+++.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 356788999999999999999998765
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.13 Score=46.77 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHh
Q 019048 106 LLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~ 124 (347)
+||+|+-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999994
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.24 E-value=0.13 Score=44.54 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=17.8
Q ss_pred EEEEECCCCChHHHH-HHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSL-VNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTL-lk~L~gl~~ 128 (347)
-+.|+|+-||||||. +..+.-++.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHH
Confidence 467999999999964 565555544
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.59 E-value=0.2 Score=43.20 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.5
Q ss_pred CeEEEEECCCCChHHHHHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..-+.|.||.|+||++++++|-..-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 44578999999999999999976443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.25 E-value=0.16 Score=44.53 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=17.1
Q ss_pred EEEEECCCCChHHHH-HHHHhhccc
Q 019048 105 SLLLIGPKGSGKSSL-VNRISKVFE 128 (347)
Q Consensus 105 ~~aIvGpnGsGKSTL-lk~L~gl~~ 128 (347)
.+.|.|+-||||||. +..++.++.
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll~ 50 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLMA 50 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHHH
Confidence 467899999999964 454555544
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.95 E-value=0.16 Score=42.87 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHh
Q 019048 102 KTTSLLLIGPKGSGKSSLVNRIS 124 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLlk~L~ 124 (347)
.|+-+.|++|+|+|||+..-+.+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 56778899999999997654433
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.91 E-value=0.21 Score=44.97 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.9
Q ss_pred cCCeEEEEECCCCChHHHHH
Q 019048 101 PKTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLl 120 (347)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36788899999999999987
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.71 E-value=0.32 Score=38.29 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHH-HHHHHhhccc
Q 019048 103 TTSLLLIGPKGSGKSS-LVNRISKVFE 128 (347)
Q Consensus 103 Ge~~aIvGpnGsGKST-Llk~L~gl~~ 128 (347)
|.+..|+||=.||||| |++.+.....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6778899999999999 8888766554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.54 E-value=0.2 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHhhccc
Q 019048 106 LLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 106 ~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
..||||+|+|||+++.-|+.-+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999998876554
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=84.50 E-value=0.27 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.1
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.+.+.|.|+||||||+-.|.|...+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999887655
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.58 E-value=0.31 Score=48.56 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.+.+.|-|+||||||.-.|.|+..+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999987664
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=82.71 E-value=0.33 Score=44.19 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.6
Q ss_pred CeEEEEECCCCChHHHHHHHH
Q 019048 103 TTSLLLIGPKGSGKSSLVNRI 123 (347)
Q Consensus 103 Ge~~aIvGpnGsGKSTLlk~L 123 (347)
+.++.|.||.|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 458999999999999987544
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=82.30 E-value=0.37 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhcc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~ 127 (347)
++.+.+.|-|+||||||+-.|.|...+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999987766
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.75 E-value=0.21 Score=41.01 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCeEEEEECCCCChHHHHH
Q 019048 102 KTTSLLLIGPKGSGKSSLV 120 (347)
Q Consensus 102 ~Ge~~aIvGpnGsGKSTLl 120 (347)
.|.-+.|..|+|||||+..
T Consensus 39 ~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TCSCEEEECSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHH
Confidence 4566789999999999863
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.38 E-value=0.39 Score=48.43 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCChHHHHHHHHhhccc
Q 019048 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (347)
Q Consensus 101 ~~Ge~~aIvGpnGsGKSTLlk~L~gl~~ 128 (347)
.+.+.+.|.|+||||||+-.|.|...+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998887663
|