Citrus Sinensis ID: 019134

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKTTAKRSGQISPN
ccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccEEEEEEEEcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccEEEcccccccEEEEccccHHHHHcccccccccEEEEcccccEEEEEEEccccccccEEccccccccccccccccccHHHHHHHHHHccccccccHHHHHcccccccccccc
cEEEccccHcccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccEEEEcccccccccEEEEEEEEcccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccEEEEcccccccccccHccccccEEcccccccccEEEEEEccccccEEEEEEcccEEEccccccEEEEEEcccEEEEEcccEcEEEEEEEEEccccEEEEEEEcccccccEEcccHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccc
mvvqsqpaaldplsnliksckptslfteipevdltdpaAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSqsqsekdkasppdpfgygskrigpngdvGWIEYLLLnanpqltshkTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMAdglnitprNVMSKLLkdersdscfrlnhyppcpdhqlqalsgrnligfgehtdpQIISVLRSnntsglqiqlrdgtwvsvpsdqssffLNVGDALQVMtngrfksvKHRVLADTNKSRIsmiyfggpplsekiaplptllAEEEESLYKEFTWCEYKMSAYKSRLADHRlglfekttakrsgqispn
mvvqsqpaaldplsnliKSCKPTSLFTeipevdltdPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFsqsqsekdkasppDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMAdglnitprNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMtngrfksvkhrvladtnksrISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLfekttakrsgqispn
MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIaplptllaeeeeslYKEFTWCEYKMSAYKSRLADHRLGLFEKTTAKRSGQISPN
***************LIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKF***********************IGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLF**************
MVV*SQ********************TEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSE***********YGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFE*************
MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKF**************DPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKTT**********
MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKTTAKRS******
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKTTAKRSGQISPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q9XG83332 Gibberellin 2-beta-dioxyg N/A no 0.959 0.996 0.711 1e-138
Q9XFR9341 Gibberellin 2-beta-dioxyg yes no 0.953 0.964 0.656 1e-130
O64692335 Gibberellin 2-beta-dioxyg no no 0.944 0.973 0.597 1e-115
Q9SQ80327 Gibberellin 2-beta-dioxyg N/A no 0.944 0.996 0.589 1e-114
Q8LEA2329 Gibberellin 2-beta-dioxyg no no 0.942 0.987 0.569 1e-111
Q9XHM5345 Gibberellin 2-beta-dioxyg N/A no 0.881 0.881 0.492 5e-85
Q96330336 Flavonol synthase/flavano no no 0.797 0.818 0.329 4e-40
Q39103358 Gibberellin 3-beta-dioxyg no no 0.846 0.815 0.315 4e-37
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.817 0.794 0.305 2e-35
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.750 0.717 0.312 3e-35
>sp|Q9XG83|G2OX_PHACN Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/336 (71%), Positives = 273/336 (81%), Gaps = 5/336 (1%)

Query: 1   MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGV 60
           MVV SQPA       L+K  K T LFT IP VDLT P AK  IV AC ++GFFK+VNHGV
Sbjct: 1   MVVLSQPALNQFF--LLKPFKSTPLFTGIPVVDLTHPDAKNLIVNACRDFGFFKLVNHGV 58

Query: 61  SLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLT 120
            LELM  LE EA++FF +SQSEKD+A PPDPFGYGSKRIGPNGDVGW+EYLLLN NP + 
Sbjct: 59  PLELMANLENEALRFFKKSQSEKDRAGPPDPFGYGSKRIGPNGDVGWVEYLLLNTNPDVI 118

Query: 121 SHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDS 180
           S K+L IF+E    FR  V+ YI AVK M Y V+ELMA+GL I  RN +S+LLKDE+SDS
Sbjct: 119 SPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDS 178

Query: 181 CFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPS 240
           CFRLNHYPPCP  ++QAL+ RNL+GFGEHTDPQIISVLRSN+TSGLQI L DGTWVSVP 
Sbjct: 179 CFRLNHYPPCP--EVQALN-RNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPP 235

Query: 241 DQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAE 300
           DQ+SFF+NVGDALQVMTNGRFKSVKHRVLADT KSR+SMIYFGGP LSE IAPLP+++ +
Sbjct: 236 DQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVMLK 295

Query: 301 EEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKTTA 336
            EE LYKEFTWCEYK +AY SRLAD+RL  F+K+ A
Sbjct: 296 GEECLYKEFTWCEYKKAAYTSRLADNRLAPFQKSAA 331
Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8.
Phaseolus coccineus (taxid: 3886)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9XFR9|G2OX2_ARATH Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1 Back     alignment and function description
>sp|O64692|G2OX3_ARATH Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQ80|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LEA2|G2OX1_ARATH Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2 Back     alignment and function description
>sp|Q9XHM5|G2OX2_PEA Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
327359295342 gibberellin 2-beta-dioxygenase [Prunus s 0.976 0.985 0.752 1e-149
254935149339 gibberellin 2-oxidase [Jatropha curcas] 0.953 0.970 0.751 1e-146
224078978332 gibberellin 2-oxidase [Populus trichocar 0.962 1.0 0.741 1e-145
255557309321 gibberellin 2-oxidase, putative [Ricinus 0.927 0.996 0.755 1e-144
340796361340 GA2ox3 [Gossypium hirsutum] 0.979 0.994 0.723 1e-143
357447293336 Gibberellin 2-oxidase [Medicago truncatu 0.971 0.997 0.704 1e-140
356549099333 PREDICTED: gibberellin 2-beta-dioxygenas 0.962 0.996 0.714 1e-139
363807830333 uncharacterized protein LOC100806026 [Gl 0.962 0.996 0.720 1e-139
49035968332 RecName: Full=Gibberellin 2-beta-dioxyge 0.959 0.996 0.711 1e-136
67077812332 gibberellin 2-oxidase [Vigna angularis] 0.956 0.993 0.710 1e-136
>gi|327359295|gb|AEA51242.1| gibberellin 2-beta-dioxygenase [Prunus salicina] gi|327359297|gb|AEA51243.1| gibberellin 2-beta-dioxygenase [Prunus salicina] Back     alignment and taxonomy information
 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/340 (75%), Positives = 294/340 (86%), Gaps = 3/340 (0%)

Query: 1   MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGV 60
           MVV SQPAALD LS+LIK+CKPTSLFT IP VDL+DP AK  IVKACE+YG FK+VNHGV
Sbjct: 1   MVVLSQPAALDHLSDLIKACKPTSLFTGIPVVDLSDPEAKHHIVKACEDYGLFKLVNHGV 60

Query: 61  SLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLT 120
            L+ M  LEA+A+KFF+  QSEK+KA P +PFGYGSKRIGPNGDVGWIEY+LLN NP + 
Sbjct: 61  PLDFMTTLEAQALKFFNLPQSEKEKAGPAEPFGYGSKRIGPNGDVGWIEYILLNTNPDII 120

Query: 121 SHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDS 180
           S K+L+IF+E  + FR AV +YI AVKKM+++V+ELM DGL I PRNV+S LL++++SD 
Sbjct: 121 SPKSLSIFKENPEIFRDAVLDYICAVKKMTFEVLELMVDGLGIEPRNVLSNLLREDKSDC 180

Query: 181 CFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPS 240
           CFRLN+YPPCP  +LQAL GRNLIGFGEHTDPQIISVLRSNNTSGLQI L+DGTWVSVP 
Sbjct: 181 CFRLNYYPPCP--ELQALRGRNLIGFGEHTDPQIISVLRSNNTSGLQISLKDGTWVSVPP 238

Query: 241 DQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAE 300
           DQ+SFF+NVGD LQVM+NGRFKSVKHRVLADT  SRISMI+FGGPPLSEKIAPLP+L+AE
Sbjct: 239 DQNSFFINVGDCLQVMSNGRFKSVKHRVLADTTSSRISMIFFGGPPLSEKIAPLPSLMAE 298

Query: 301 EEESLYKEFT-WCEYKMSAYKSRLADHRLGLFEKTTAKRS 339
            EESLYKEFT WCEYK SAYKSRLAD+RLGLFEK+    S
Sbjct: 299 GEESLYKEFTWWCEYKKSAYKSRLADYRLGLFEKSVPMMS 338

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|254935149|gb|ACT87982.1| gibberellin 2-oxidase [Jatropha curcas] Back     alignment and taxonomy information
>gi|224078978|ref|XP_002305704.1| gibberellin 2-oxidase [Populus trichocarpa] gi|222848668|gb|EEE86215.1| gibberellin 2-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557309|ref|XP_002519685.1| gibberellin 2-oxidase, putative [Ricinus communis] gi|223541102|gb|EEF42658.1| gibberellin 2-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|340796361|gb|AEK70419.1| GA2ox3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|357447293|ref|XP_003593922.1| Gibberellin 2-oxidase [Medicago truncatula] gi|355482970|gb|AES64173.1| Gibberellin 2-oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356549099|ref|XP_003542935.1| PREDICTED: gibberellin 2-beta-dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|363807830|ref|NP_001242439.1| uncharacterized protein LOC100806026 [Glycine max] gi|255646453|gb|ACU23705.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|49035968|sp|Q9XG83.1|G2OX_PHACN RecName: Full=Gibberellin 2-beta-dioxygenase; AltName: Full=GA 2-oxidase; AltName: Full=Gibberellin 2-beta-hydroxylase; AltName: Full=Gibberellin 2-oxidase gi|4678586|emb|CAB41036.1| GA 2-oxidase [Phaseolus coccineus] Back     alignment and taxonomy information
>gi|67077812|dbj|BAD99507.1| gibberellin 2-oxidase [Vigna angularis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2198258341 GA2OX2 "gibberellin 2-oxidase" 0.953 0.964 0.635 9.7e-112
TAIR|locus:505006289335 ATGA2OX3 "gibberellin 2-oxidas 0.939 0.967 0.588 2.1e-100
TAIR|locus:2032080329 ATGA2OX1 "Arabidopsis thaliana 0.913 0.957 0.569 4.2e-95
UNIPROTKB|Q8S0S6327 OJ1414_E05.17 "cDNA clone:001- 0.944 0.996 0.561 1e-93
TAIR|locus:2204823329 GA2OX6 "gibberellin 2-oxidase 0.866 0.908 0.469 1.7e-68
UNIPROTKB|Q5W726382 OSJNBa0017J22.4 "Gibberellin 2 0.443 0.400 0.449 1.3e-63
TAIR|locus:2202587321 GA2OX4 "gibberellin 2-oxidase 0.884 0.950 0.446 5.4e-63
UNIPROTKB|Q68Y45242 P0022D06.9 "Putative gibberell 0.330 0.471 0.534 2.9e-54
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.855 0.835 0.310 2.1e-36
TAIR|locus:2159542336 FLS1 "flavonol synthase 1" [Ar 0.727 0.747 0.343 2.4e-35
TAIR|locus:2198258 GA2OX2 "gibberellin 2-oxidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 213/335 (63%), Positives = 261/335 (77%)

Query:     1 MVVQSQPAALDPLSNLIKSCKPTSLFTE--IPEVDLTDPAAKTQIVKACEEYGFFKVVNH 58
             MVV  QP  LD   +LI + KP  + T   IP V+L DP AKT+IVKACEE+GFFKVVNH
Sbjct:     1 MVVLPQPVTLDNHISLIPTYKPVPVLTSHSIPVVNLADPEAKTRIVKACEEFGFFKVVNH 60

Query:    59 GVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQ 118
             GV  ELM +LE EA+ FF   QS K++A PP+P+GYG+KRIGPNGDVGWIEYLLLNANPQ
Sbjct:    61 GVRPELMTRLEQEAIGFFGLPQSLKNRAGPPEPYGYGNKRIGPNGDVGWIEYLLLNANPQ 120

Query:   119 LTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERS 178
             L+S KT A+F++  Q FR +V+EY+  +K++SY+V+E++A+ L I PR+ +SK+L+DE+S
Sbjct:   121 LSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKS 180

Query:   179 DSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSV 238
             DSC RLNHYP   +   + +     +GFGEHTDPQIISVLRSNNT+GLQI ++DG+WV+V
Sbjct:   181 DSCLRLNHYPAAEEEAEKMVK----VGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAV 236

Query:   239 PSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIXXXXXXX 298
             P D SSFF+NVGDALQVMTNGRFKSVKHRVLADT +SRISMIYFGGPPLS+KI       
Sbjct:   237 PPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLV 296

Query:   299 XXXXXXXYKEFTWCEYKMSAYKSRLADHRLGLFEK 333
                    YKEFTW +YK SAYKS+L D+RLGLFEK
Sbjct:   297 PEQDDWLYKEFTWSQYKSSAYKSKLGDYRLGLFEK 331
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0045487 "gibberellin catabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0009639 "response to red or far red light" evidence=IEP
GO:0010114 "response to red light" evidence=IEP
GO:0009694 "jasmonic acid metabolic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:505006289 ATGA2OX3 "gibberellin 2-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032080 ATGA2OX1 "Arabidopsis thaliana gibberellin 2-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S0S6 OJ1414_E05.17 "cDNA clone:001-031-D01, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2204823 GA2OX6 "gibberellin 2-oxidase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5W726 OSJNBa0017J22.4 "Gibberellin 2-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2202587 GA2OX4 "gibberellin 2-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q68Y45 P0022D06.9 "Putative gibberellin 2-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159542 FLS1 "flavonol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XG83G2OX_PHACN1, ., 1, 4, ., 1, 1, ., 1, 30.71130.95940.9969N/Ano
Q9SQ80G2OX1_PEA1, ., 1, 4, ., 1, 1, ., 1, 30.58920.94490.9969N/Ano
Q9XFR9G2OX2_ARATH1, ., 1, 4, ., 1, 1, ., 1, 30.65670.95360.9648yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.976
4th Layer1.14.11.7LOW CONFIDENCE prediction!
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.130.991
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA2ox3
gibberellin 2-oxidase (332 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GA20-ox
SubName- Full=Giberellin 20-oxidase; Flags- Fragment; (386 aa)
  •  •••0.919
GA20ox6
gibberellin 20-oxidase (EC-1.14.11.12) (385 aa)
  •  •••0.912
GA3ox1
gibberellin 3-oxidase (EC-1.14.11.15) (372 aa)
  •  • •0.907
TB1
SubName- Full=Teosinte-branched-like protein; (454 aa)
      • 0.510
gw1.XVI.1327.1
type-a response regulator (146 aa)
      • 0.506
PtRR11
type-a response regulator (134 aa)
      • 0.506
gw1.XIX.1648.1
type-a response regulator (136 aa)
      • 0.506
gw1.XIII.278.1
type-a response regulator (128 aa)
      • 0.506
gw1.VIII.35.1
type-a response regulator (147 aa)
      • 0.506
gw1.VIII.329.1
type-a response regulator (160 aa)
      • 0.506

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-171
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-57
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-51
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-50
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 6e-46
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-46
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-44
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-43
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 9e-43
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-41
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-40
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-39
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-38
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-38
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-37
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-35
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-31
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-31
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-29
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-28
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-27
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-26
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-25
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-24
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-24
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-20
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 7e-12
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-05
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information 
 Score =  478 bits (1232), Expect = e-171
 Identities = 201/333 (60%), Positives = 254/333 (76%), Gaps = 7/333 (2%)

Query: 1   MVVQSQPAALDPLSNLIKSCKPTSLFTEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGV 60
           MV+  QPA  D    +   CKP  +   IP +DLTD  AKTQIVKACEE+GFFKV+NHGV
Sbjct: 1   MVIVLQPATFDSNLYVNPKCKPVPVL--IPVIDLTDSDAKTQIVKACEEFGFFKVINHGV 58

Query: 61  SLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLT 120
             +L+ +LE EA+ FF+   S KDKA PPDPFGYG+KRIGPNGDVGW+EY+LLNAN  L 
Sbjct: 59  RPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIGPNGDVGWLEYILLNANLCLE 118

Query: 121 SHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDS 180
           SHKT A+F+     FR AV+EY+  +K+MS +V+E++ + L I P+  +SKL+K + SDS
Sbjct: 119 SHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDS 178

Query: 181 CFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPS 240
           C R+NHYP     + +    +  IGFGEHTDPQ+IS+LRSN+T+GLQI ++DGTWV VP 
Sbjct: 179 CLRMNHYP-----EKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPP 233

Query: 241 DQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAE 300
           D SSFF+ VGD LQVMTNGRFKSVKHRV+ +T +SRISMIYF GPPLSEKIAPL  L+ +
Sbjct: 234 DHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPK 293

Query: 301 EEESLYKEFTWCEYKMSAYKSRLADHRLGLFEK 333
           +++ LY EFTW +YK+SAYK++L D+RLGLFEK
Sbjct: 294 QDDCLYNEFTWSQYKLSAYKTKLGDYRLGLFEK 326

Length = 335
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02997325 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.83
PLN03176120 flavanone-3-hydroxylase; Provisional 99.69
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.6
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.13
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.64
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.45
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 84.78
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=3.1e-77  Score=567.79  Aligned_cols=303  Identities=63%  Similarity=1.082  Sum_probs=267.0

Q ss_pred             CCCceeeCCChHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHcccCCCCCCCCCCCCCCCCCCCC
Q 019134           27 TEIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVG  106 (345)
Q Consensus        27 ~~iP~IDls~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~~~~~~~~~~  106 (345)
                      ..||+|||++.+..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.....+||+....+..++.+
T Consensus        25 ~~iPvIDls~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~~~~~~~~~  104 (335)
T PLN02156         25 VLIPVIDLTDSDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIGPNGDVG  104 (335)
T ss_pred             CCCCcccCCChHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccccCCCCCCC
Confidence            36999999987778899999999999999999999999999999999999999999999876566799755444445668


Q ss_pred             ceeeecccCCCCcCccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHhhcCCCCccceeeee
Q 019134          107 WIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNH  186 (345)
Q Consensus       107 ~~e~~~~~~~~~~~~~~~~~~wp~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~  186 (345)
                      |+|.+.+...+.......+|.||+.++.||+++++|+++|.+|+.+|+++||++||++++++|++++......+.||+||
T Consensus       105 ~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~lRl~~  184 (335)
T PLN02156        105 WLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNH  184 (335)
T ss_pred             ceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceEeEEe
Confidence            99988776554322222468999888999999999999999999999999999999974578988775334567899999


Q ss_pred             cCCCCCchhhhccCCCccccccccCCCceeEEeeCCCCceEEEecCCceEEccCCCCcEEeechhhHHHHhCCccccccc
Q 019134          187 YPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKH  266 (345)
Q Consensus       187 Ypp~~~~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~~g~lvVniGD~L~~~TnG~~~st~H  266 (345)
                      ||+|+..     ..+..+|+++|||+|+||||+||+++||||+.++|+|++|+|.||+||||+||+||+||||+|+||+|
T Consensus       185 YP~~~~~-----~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~H  259 (335)
T PLN02156        185 YPEKEET-----PEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKH  259 (335)
T ss_pred             CCCCCCC-----ccccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCeeeccce
Confidence            9999853     01346899999999999999999999999988899999999999999999999999999999999999


Q ss_pred             eeecCCCCceEEEEeeeCCCCCCeEecCccccCcCccCCCCcccHHHHHHHHHhcccccccccchhhc
Q 019134          267 RVLADTNKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYKEFTWCEYKMSAYKSRLADHRLGLFEKT  334 (345)
Q Consensus       267 RVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  334 (345)
                      ||+.+..++|||++||++|+.|++|+|+++++++++|++|+|++++||+..++...+...+++.+++.
T Consensus       260 RVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v~~~~p~~y~p~~~~ey~~~~~~~~~~~~~~~~~~~~  327 (335)
T PLN02156        260 RVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDYRLGLFEKQ  327 (335)
T ss_pred             eeecCCCCCEEEEEEeecCCCCCEEeCChHhcCCCCCccCCCccHHHHHHHHHhccCCCccchhhhcc
Confidence            99988888999999999999999999999999999999999999999999999888877677777654

>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-26
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-26
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-25
1w9y_A319 The Structure Of Acc Oxidase Length = 319 6e-24
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-15
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 6e-10
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-08
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 42  QIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFG----YGSK 97
           ++ KA  ++G   ++NHG+  +LM +++    +FFS S  EK+K +     G    YGSK
Sbjct: 69  ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 98  RIG-PNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMEL 156
                +G + W +Y    A P+    + L+I+ +    +  A  EY   ++ ++ +V + 
Sbjct: 129 LANNASGQLEWEDYFFHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 157 MADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIIS 216
           ++ GL + P  +  ++   E      ++N+YP CP  +L        +G   HTD   ++
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-------LGVEAHTDVSALT 239
Query: 217 VLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSR 276
            +  N   GLQ+   +G WV+      S  +++GD L++++NG++KS+ HR L +  K R
Sbjct: 240 FILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 277 ISMIYFGGPP 286
           IS   F  PP
Sbjct: 299 ISWAVFCEPP 308
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-102
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 5e-87
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 5e-87
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-71
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-66
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
 Score =  301 bits (772), Expect = e-102
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 24/275 (8%)

Query: 28  EIPEVDLTDPAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKAS 87
           ++  +D     +  + V++  E GF  + NH +  EL+ ++  E   FF+     +   +
Sbjct: 3   KLETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFMFN 62

Query: 88  PPDPFGYGSKRIGPNGDVGWIEYLL--LNANPQLTSHKTLAIFQERSQKFRRAVDEYIVA 145
                G+    I        ++ +    +  P          +       R  +  Y   
Sbjct: 63  RETHDGFFPASISETAKGHTVKDIKEYYHVYP----------WGRIPDSLRANILAYYEK 112

Query: 146 VKKMSYQVMELMADGLNITPRNVMSKLLKDERSD---SCFRLNHYPPCPDHQLQALSGRN 202
              ++ +++E +        +   S  L +  ++   +  R+ HYPP    +        
Sbjct: 113 ANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGDEEM-----G 167

Query: 203 LIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFK 262
            I    H D  +I+VL + N  GLQ++ +DG+W+ VPSD  +  +N+GD LQ  ++G F 
Sbjct: 168 AIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDMLQEASDGYFP 227

Query: 263 SVKHRVL----ADTNKSRISMIYFGGPPLSEKIAP 293
           S  HRV+     D  KSRIS+  F  P  S  ++ 
Sbjct: 228 STSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSE 262
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.67
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.54
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 87.21
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 82.8
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 82.65
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 81.83
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 81.7
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=5.7e-75  Score=549.24  Aligned_cols=287  Identities=21%  Similarity=0.321  Sum_probs=249.6

Q ss_pred             CCCCCceeeCCC-----hHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHcccCC--CCCCCCCCC
Q 019134           25 LFTEIPEVDLTD-----PAAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASP--PDPFGYGSK   97 (345)
Q Consensus        25 ~~~~iP~IDls~-----~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~~Gy~~~   97 (345)
                      +++.||+|||+.     .+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++..  ...+||...
T Consensus         3 ~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~   82 (312)
T 3oox_A            3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF   82 (312)
T ss_dssp             -CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECC
T ss_pred             CCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccc
Confidence            468899999984     3478899999999999999999999999999999999999999999999864  346788543


Q ss_pred             CCC---CCCCCCceeeecccCCCCcC----ccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHH
Q 019134           98 RIG---PNGDVGWIEYLLLNANPQLT----SHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMS  170 (345)
Q Consensus        98 ~~~---~~~~~~~~e~~~~~~~~~~~----~~~~~~~wp~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~  170 (345)
                      ...   .....||+|.|.++......    ....+|.||+.+++||+++++|+++|.+|+..||++||++||++ +++|.
T Consensus        83 g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~  161 (312)
T 3oox_A           83 GVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE-RDFFK  161 (312)
T ss_dssp             CCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTTTH
T ss_pred             cceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-HHHHH
Confidence            221   22346899988875432211    11236899998999999999999999999999999999999999 78999


Q ss_pred             HhhcCCCCccceeeeecCCCCCchhhhccCCCccccccccCCCceeEEeeCCCCceEEEecCCceEEccCCCCcEEeech
Q 019134          171 KLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVG  250 (345)
Q Consensus       171 ~~~~~~~~~~~lrl~~Ypp~~~~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~~g~lvVniG  250 (345)
                      +.+.  .+.+.||++|||||+.+       +..+|+++|||+|+||||+||+++||||++++|+|++|+|.||++|||||
T Consensus       162 ~~~~--~~~~~lr~~~Ypp~~~~-------~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiG  232 (312)
T 3oox_A          162 PTVQ--DGNSVLRLLHYPPIPKD-------ATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIG  232 (312)
T ss_dssp             HHHT--TCCCEEEEEEECCCSSC-------CC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEEC
T ss_pred             HHhc--CCcceeeeEecCCCCCC-------cCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhH
Confidence            9885  35688999999999875       12399999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhCCccccccceeecCC----CCceEEEEeeeCCCCCCeEecCccccCcCccCCCC-cccHHHHHHHHHhc
Q 019134          251 DALQVMTNGRFKSVKHRVLADT----NKSRISMIYFGGPPLSEKIAPLPTLLAEEEESLYK-EFTWCEYKMSAYKS  321 (345)
Q Consensus       251 D~L~~~TnG~~~st~HRVv~~~----~~~R~Sia~F~~P~~d~~i~pl~~~~~~~~p~~y~-~~t~~ey~~~~~~~  321 (345)
                      |+||+||||+||||+|||+.+.    ..+|||++||++|+.|++|+|+++|+++++|++|+ ++|++||+..++++
T Consensus       233 D~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~  308 (312)
T 3oox_A          233 DMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE  308 (312)
T ss_dssp             HHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHH
T ss_pred             HHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHH
Confidence            9999999999999999998763    46799999999999999999999999999999999 99999999988753
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 9e-58
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-57
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-48
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-41
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  188 bits (478), Expect = 9e-58
 Identities = 80/324 (24%), Positives = 154/324 (47%), Gaps = 25/324 (7%)

Query: 6   QPAALDPLSNLIKSCKPTSLFTEIPEVDLTD---------PAAKTQIVKACEEYGFFKVV 56
           +P       N +   +      ++P +DL +              ++ KA  ++G   ++
Sbjct: 23  RPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 82

Query: 57  NHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFG----YGSKRI-GPNGDVGWIEYL 111
           NHG+  +LM +++    +FFS S  EK+K +     G    YGSK     +G + W +Y 
Sbjct: 83  NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF 142

Query: 112 LLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSK 171
              A P+    + L+I+ +    +  A  EY   ++ ++ +V + ++ GL + P  +  +
Sbjct: 143 FHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKE 200

Query: 172 LLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLR 231
           +   E      ++N+YP CP  +L        +G   HTD   ++ +  N   GLQ+   
Sbjct: 201 VGGLEELLLQMKINYYPKCPQPELA-------LGVEAHTDVSALTFILHNMVPGLQLF-Y 252

Query: 232 DGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKI 291
           +G WV+      S  +++GD L++++NG++KS+ HR L +  K RIS   F  PP  + +
Sbjct: 253 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312

Query: 292 -APLPTLLAEEEESLYKEFTWCEY 314
             PLP +++ E  + +   T+ ++
Sbjct: 313 LKPLPEMVSVESPAKFPPRTFAQH 336
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.72
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-69  Score=518.01  Aligned_cols=289  Identities=27%  Similarity=0.527  Sum_probs=244.9

Q ss_pred             CCCCCCCceeeCCC-----h----HHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHcccCCCCC--
Q 019134           23 TSLFTEIPEVDLTD-----P----AAKTQIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDP--   91 (345)
Q Consensus        23 ~~~~~~iP~IDls~-----~----~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~--   91 (345)
                      ..+..+||+|||+.     +    .++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.....  
T Consensus        40 ~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~  119 (349)
T d1gp6a_          40 KEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG  119 (349)
T ss_dssp             CCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGT
T ss_pred             cCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccC
Confidence            44556899999985     1    367899999999999999999999999999999999999999999999974322  


Q ss_pred             --CCCCCCCC-CCCCCCCceeeecccCCCCcCccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhH
Q 019134           92 --FGYGSKRI-GPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMELMADGLNITPRNV  168 (345)
Q Consensus        92 --~Gy~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~  168 (345)
                        .||+.... ...+..++.+.......+.  ....+|.||+.++.|++.+++|+++|.+|+.+|+++++++||++ +++
T Consensus       120 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~-~~~  196 (349)
T d1gp6a_         120 KIQGYGSKLANNASGQLEWEDYFFHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE-PDR  196 (349)
T ss_dssp             BCSEEECCCCCSTTCCCCSCEEEEEEEESG--GGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTH
T ss_pred             Cccccccccccccccccchhhhhccccccc--ccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCC-HHH
Confidence              23332222 2334455555433222121  22346899999999999999999999999999999999999999 788


Q ss_pred             HHHhhcC-CCCccceeeeecCCCCCchhhhccCCCccccccccCCCceeEEeeCCCCceEEEecCCceEEccCCCCcEEe
Q 019134          169 MSKLLKD-ERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFL  247 (345)
Q Consensus       169 ~~~~~~~-~~~~~~lrl~~Ypp~~~~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V~p~~g~lvV  247 (345)
                      |.+.+.. +...+.||++|||+++..       ...+|+++|||+|+||||+|+.++||||+ ++|+|++|+|.+|++||
T Consensus       197 ~~~~~~~~~~~~~~lrl~~Yp~~~~~-------~~~~g~~~HtD~g~lTlL~q~~~~GLqv~-~~g~W~~V~p~~~a~vV  268 (349)
T d1gp6a_         197 LEKEVGGLEELLLQMKINYYPKCPQP-------ELALGVEAHTDVSALTFILHNMVPGLQLF-YEGKWVTAKCVPDSIVM  268 (349)
T ss_dssp             HHHHTTHHHHCEEEEEEEEECCCSST-------TTCCSEEEECCCSSEEEEEECSCCCEEEE-ETTEEEECCCCTTCEEE
T ss_pred             HHHHhccccccceeeeecccccccch-------hhccccccCCCCcceEEEeccCCcceeee-cCCceEEccCCCCCeee
Confidence            8877621 245678999999999876       46789999999999999999999999996 58999999999999999


Q ss_pred             echhhHHHHhCCccccccceeecCCCCceEEEEeeeCCCCCCeE-ecCccccCcCccCCCCcccHHHHHHHHHhcc
Q 019134          248 NVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYFGGPPLSEKI-APLPTLLAEEEESLYKEFTWCEYKMSAYKSR  322 (345)
Q Consensus       248 niGD~L~~~TnG~~~st~HRVv~~~~~~R~Sia~F~~P~~d~~i-~pl~~~~~~~~p~~y~~~t~~ey~~~~~~~~  322 (345)
                      |+||+||+||||+||||+|||+.+++++|||++||++|+.|++| +|+++|+++++|++|+|+|++||++.++..+
T Consensus       269 NvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~~~  344 (349)
T d1gp6a_         269 HIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGK  344 (349)
T ss_dssp             EECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHH
T ss_pred             eHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHHhcc
Confidence            99999999999999999999999888999999999999999865 8999999999999999999999999887443
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure