Citrus Sinensis ID: 019168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MIMGLNQRRRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALIDKNNLVHDQ
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccccccEEEccccEEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEccccEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHccccEEEccHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHccccccccccEEEEccEEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEcccEEEcccEEHHccccccccccccccccccccccccccccccccccEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccHHcccHHHHHHHHHHccccEEHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MIMGLNQRRRWVLDVKSVVMLGLGLLFAMAQHTVqlrsnhpmhgIVDRVneiggpyiglvmayppeesALITSRLfvhnsripfidlagrrfnvgkiknVDVIYVMTGEQTVNSGITVQILLDafdirgvvhygtagssnnslsfgdVSVMKYVAFTGswkwkafksetgqlpeldfgafnfpvrgknllakveftpsqlysagkpmeelfwlpvdsewfDIATQLQDLELRRClndtyclperpkvivglrgstadiflDNAAYREFLFKQfnvstvdeESAAIVMACLsnavpsivfrgvsdlgggsdrlLSISRISLASINALRVAAEFIALIdknnlvhdq
mimglnqrrrwVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPfidlagrrfnvgKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTagssnnslsfGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDtyclperpkvivgLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALidknnlvhdq
MIMGLNQRRRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDrllsisrislasinalRVAAEFIALIDKNNLVHDQ
******QRRRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALIDKNNL****
*******RRRWVLDVKSVVMLGLGLLFAMAQH******************EIGGPYIGLVMAYPPEESALITSRLF***SRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIA***********
********RRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALIDKNNLVHDQ
*IMGLNQRRRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALIDK*******
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIMGLNQRRRWVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALIDKNNLVHDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q07469312 Bark storage protein A OS N/A no 0.872 0.964 0.408 6e-58
Q09117312 Bark storage protein B OS N/A no 0.872 0.964 0.405 2e-57
P96122269 MTA/SAH nucleosidase OS=T yes no 0.620 0.795 0.259 9e-10
Q8CP08228 5'-methylthioadenosine/S- yes no 0.573 0.868 0.260 2e-09
Q5HNU8228 5'-methylthioadenosine/S- yes no 0.573 0.868 0.260 2e-09
Q9KDD4231 5'-methylthioadenosine/S- yes no 0.623 0.930 0.237 5e-09
Q7A0R5228 5'-methylthioadenosine/S- yes no 0.585 0.885 0.237 8e-08
A8Z4D8228 5'-methylthioadenosine/S- yes no 0.585 0.885 0.237 8e-08
Q6G8W9228 5'-methylthioadenosine/S- yes no 0.585 0.885 0.237 8e-08
Q7A5B0228 5'-methylthioadenosine/S- yes no 0.585 0.885 0.237 8e-08
>sp|Q07469|BSPA_POPDE Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1 Back     alignment and function desciption
 Score =  224 bits (572), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 186/311 (59%), Gaps = 10/311 (3%)

Query: 29  MAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLA 88
           M Q ++Q     P+  I     +I    +GLV      E AL  S L+  +S    +D+A
Sbjct: 1   MPQQSMQASLIDPIAEIERSNCKIAHLRLGLVFTSDNNERALQDSGLYSPDSEDSSVDIA 60

Query: 89  GRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGS-SNNSLSFGD 147
           GRRF+ G +    ++YV TG  +VN   T+QILL  F+I GV+++G AGS    ++  GD
Sbjct: 61  GRRFHSGTLNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYFGNAGSLDKKTMVPGD 120

Query: 148 VSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM 207
           VSV + VAFTG W WK F SE G+L    FG FN+P  G+NLL  VE+   +++S  +  
Sbjct: 121 VSVPQAVAFTGVWNWKKFGSEKGKLV---FGDFNYPENGENLLGTVEYEKIKMFSPSEAP 177

Query: 208 EELFWLPVDSEWFDIATQ-LQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYR 266
           +E+FWLP+   W++ AT+ L+D++LR+C +D  CLP +PKV+ G + ST+D ++ N AY 
Sbjct: 178 KEVFWLPITKSWYNAATEALKDMKLRKCYSDE-CLPGKPKVVFGSKSSTSDFYVRNKAYG 236

Query: 267 EFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRIS-LASINA 325
           +FL   F+  T D  SA++ +  LSN    +VF+GVS++ G +    S SR+S LAS NA
Sbjct: 237 DFLNDNFDAKTADTASASVALTSLSNEKLFVVFQGVSNVAGETS---SNSRVSYLASYNA 293

Query: 326 LRVAAEFIALI 336
              A +FI  I
Sbjct: 294 FLAATKFINSI 304
May play a role in nitrogen storage.
Populus deltoides (taxid: 3696)
>sp|Q09117|BSPB_POPDE Bark storage protein B OS=Populus deltoides GN=BSP PE=1 SV=1 Back     alignment and function description
>sp|P96122|MTNN_TREPA MTA/SAH nucleosidase OS=Treponema pallidum (strain Nichols) GN=mtnN PE=3 SV=2 Back     alignment and function description
>sp|Q8CP08|MTNN_STAES 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q5HNU8|MTNN_STAEQ 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q9KDD4|MTNN_BACHD 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q7A0R5|MTNN_STAAW 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus aureus (strain MW2) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A8Z4D8|MTNN_STAAT 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q6G8W9|MTNN_STAAS 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus aureus (strain MSSA476) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q7A5B0|MTNN_STAAN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus aureus (strain N315) GN=mtnN PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
359489880345 PREDICTED: bark storage protein A-like [ 0.953 0.953 0.611 1e-113
297737307412 unnamed protein product [Vitis vinifera] 0.953 0.798 0.611 1e-113
255558013394 mta/sah nucleosidase, putative [Ricinus 0.733 0.642 0.719 1e-105
326526309353 predicted protein [Hordeum vulgare subsp 0.843 0.824 0.578 8e-92
115465984343 Os06g0112100 [Oryza sativa Japonica Grou 0.846 0.851 0.569 2e-90
223942355333 unknown [Zea mays] gi|413953518|gb|AFW86 0.860 0.891 0.546 5e-90
357110884339 PREDICTED: bark storage protein B-like [ 0.843 0.858 0.581 1e-89
225449647340 PREDICTED: bark storage protein A [Vitis 0.828 0.841 0.47 1e-71
224144707339 predicted protein [Populus trichocarpa] 0.901 0.917 0.436 2e-69
302781292 489 hypothetical protein SELMODRAFT_441751 [ 0.898 0.633 0.416 2e-64
>gi|359489880|ref|XP_002272967.2| PREDICTED: bark storage protein A-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/335 (61%), Positives = 262/335 (78%), Gaps = 6/335 (1%)

Query: 11  WVLDVKSVVMLGLGLLFAMAQHTVQLRSNHPMHGIVDRVNEIGGPYIGLVMAYPPEESAL 70
           W +D     ++GL ++  M + TV+L+ +H +HG+V+RVNE  GP++GL+M YP EE AL
Sbjct: 17  WAVD-----LVGLLVVAVMVEETVELKLSHHLHGVVERVNERNGPFVGLLMTYPTEEIAL 71

Query: 71  ITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGV 130
             S  FV +S  P + LAGRRFN+GKIK VDVIYVM+GEQT+N+GITVQ+L+D FD+ G+
Sbjct: 72  QVSGFFVPSSDFPLVQLAGRRFNIGKIKGVDVIYVMSGEQTLNAGITVQLLIDTFDVVGI 131

Query: 131 VHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLL 190
           VHYG AGS+N+SL  GDVSV KYVA T SWKWK FKS+ G LPEL FG +N P++G+NLL
Sbjct: 132 VHYGIAGSTNDSLLIGDVSVPKYVAQTSSWKWKKFKSKKGALPELKFGDYNLPIKGENLL 191

Query: 191 AKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVG 250
           A++EFT  QLYS G+PM+ELFWL  D +WF++ATQLQ+++L++CLN+TYCL E+PKV  G
Sbjct: 192 AEIEFTQVQLYSTGRPMQELFWLETDPKWFNLATQLQEVDLQQCLNETYCLSEKPKVAYG 251

Query: 251 LRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSD 310
           LRGS+ADIF+DNAAY EFLFK  N+STVDEESAA+VMA +SN VPS+VFRG+SD  G   
Sbjct: 252 LRGSSADIFVDNAAYNEFLFKTLNISTVDEESAAVVMASMSNGVPSVVFRGISDTAGDGG 311

Query: 311 RLLSISRISLASINALRVAAEFIALIDKNNLVHDQ 345
             LS S  SLA+ NA+RVA EFI L+ +   VHDQ
Sbjct: 312 T-LSSSIFSLAATNAVRVAVEFIGLLGREGKVHDQ 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737307|emb|CBI26508.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558013|ref|XP_002520035.1| mta/sah nucleosidase, putative [Ricinus communis] gi|223540799|gb|EEF42359.1| mta/sah nucleosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|326526309|dbj|BAJ97171.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|115465984|ref|NP_001056591.1| Os06g0112100 [Oryza sativa Japonica Group] gi|55295909|dbj|BAD67777.1| putative vegetative storage protein win4.5 [Oryza sativa Japonica Group] gi|113594631|dbj|BAF18505.1| Os06g0112100 [Oryza sativa Japonica Group] gi|125553775|gb|EAY99380.1| hypothetical protein OsI_21348 [Oryza sativa Indica Group] gi|125595803|gb|EAZ35583.1| hypothetical protein OsJ_19869 [Oryza sativa Japonica Group] gi|215692471|dbj|BAG87891.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737538|dbj|BAG96668.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737702|dbj|BAG96832.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|223942355|gb|ACN25261.1| unknown [Zea mays] gi|413953518|gb|AFW86167.1| hypothetical protein ZEAMMB73_090894 [Zea mays] Back     alignment and taxonomy information
>gi|357110884|ref|XP_003557245.1| PREDICTED: bark storage protein B-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|225449647|ref|XP_002262699.1| PREDICTED: bark storage protein A [Vitis vinifera] gi|296090373|emb|CBI40192.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144707|ref|XP_002325384.1| predicted protein [Populus trichocarpa] gi|118487068|gb|ABK95364.1| unknown [Populus trichocarpa] gi|222862259|gb|EEE99765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302781292|ref|XP_002972420.1| hypothetical protein SELMODRAFT_441751 [Selaginella moellendorffii] gi|300159887|gb|EFJ26506.1| hypothetical protein SELMODRAFT_441751 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2136002338 AT4G24340 [Arabidopsis thalian 0.762 0.778 0.429 3.6e-57
TAIR|locus:2136012336 AT4G24350 [Arabidopsis thalian 0.831 0.854 0.404 2.5e-56
TAIR|locus:2123543348 AT4G28940 [Arabidopsis thalian 0.837 0.830 0.374 1.1e-50
TIGR_CMR|CPS_4743243 CPS_4743 "MTA/SAH nucleosidase 0.318 0.452 0.327 5.5e-10
TIGR_CMR|BA_4602231 BA_4602 "MTA/SAH nucleosidase" 0.263 0.393 0.315 1.1e-07
UNIPROTKB|Q9KPI8231 mtnN "5'-methylthioadenosine/S 0.252 0.376 0.295 1.1e-06
TIGR_CMR|VC_2379231 VC_2379 "MTA/SAH nucleosidase" 0.252 0.376 0.295 1.1e-06
TIGR_CMR|SO_1322236 SO_1322 "5-methylthioadenosine 0.324 0.474 0.271 4.3e-05
TIGR_CMR|BA_2866 459 BA_2866 "MTA/SAH nucleosidase 0.257 0.193 0.276 0.00035
TIGR_CMR|CJE_0112229 CJE_0112 "MTA/SAH nucleosidase 0.185 0.279 0.25 0.00076
TAIR|locus:2136002 AT4G24340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 116/270 (42%), Positives = 169/270 (62%)

Query:    46 VDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYV 105
             + ++N   GPYIGLV  +  EE A + S  F  +   PF+DL+GRRF +GKI    V+YV
Sbjct:    43 IRKINR-RGPYIGLVTVFETEEDAFLGSVDFRLDPTHPFLDLSGRRFRIGKIHGKKVVYV 101

Query:   106 MTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKW-KA 164
               G   VN+    Q ++D F ++G+VH+G AG+ NNS+S GDVS+ K +   G W W   
Sbjct:   102 RCGIGMVNAAAATQQMIDVFSVKGIVHFGIAGNINNSMSIGDVSIPKQITNAGLWDWLNP 161

Query:   165 FKSETGQ-LPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM---EELFWLPVDSEWF 220
              K++  + +  LD G +N P +G N L  + ++  +LYS    +   +++FW+    EW 
Sbjct:   162 GKAKGNEDVAYLDVGNYNVP-QGNNKLGTIGYSYEELYSVSGHINSPKKVFWINTTQEWL 220

Query:   221 DIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDE 280
              +A  L+ +EL +C+N + CLP +PKV+VGL+ +TADIF+DNAAYR FL+  F VS+ D 
Sbjct:   221 HLAADLEKMELLQCVNASLCLPNKPKVVVGLKAATADIFVDNAAYRNFLYDTFGVSSSDM 280

Query:   281 ESAAIVMACLSNAVPSIVFRGVSDLGGGSD 310
             ES+A+ M C+SN  P IV RG+SDL G  D
Sbjct:   281 ESSAVAMTCVSNGYPLIVIRGLSDLAGVGD 310
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009116 "nucleoside metabolic process" evidence=IEA;ISS
TAIR|locus:2136012 AT4G24350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123543 AT4G28940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4743 CPS_4743 "MTA/SAH nucleosidase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4602 BA_4602 "MTA/SAH nucleosidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPI8 mtnN "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2379 VC_2379 "MTA/SAH nucleosidase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1322 SO_1322 "5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2866 BA_2866 "MTA/SAH nucleosidase / phosphatase, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0112 CJE_0112 "MTA/SAH nucleosidase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.9LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OsI_21348
Os06g0112100 (343 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
COG0775234 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide 4e-14
pfam01048232 pfam01048, PNP_UDP_1, Phosphorylase superfamily 4e-13
PRK05584230 PRK05584, PRK05584, 5'-methylthioadenosine/S-adeno 3e-10
TIGR01704228 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/ 7e-05
PRK14697233 PRK14697, PRK14697, bifunctional 5'-methylthioaden 6e-04
PRK06698 459 PRK06698, PRK06698, bifunctional 5'-methylthioaden 0.001
PRK07164218 PRK07164, PRK07164, 5'-methylthioadenosine/S-adeno 0.002
>gnl|CDD|223846 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information 
 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 48/251 (19%), Positives = 86/251 (34%), Gaps = 48/251 (19%)

Query: 87  LAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFG 146
           +AG +F  G++   +V+ V++G   VN+ +T  +LL  F    V++ G+AG   +SL+ G
Sbjct: 30  IAGTKFYTGQMAGKEVVLVLSGIGKVNAALTTTLLLAKFSPDAVINTGSAGGLVSSLAIG 89

Query: 147 DVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKP 206
           DV V   +++                   D     F                        
Sbjct: 90  DVVVSDALSY------------------HDVDLTAFGY---------------EIGQIPT 116

Query: 207 MEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYR 266
            E   +   D E  D+A             +        ++  GL  +            
Sbjct: 117 GEPALFEA-DEELLDLA--------GEVAGEGKL-----RLRTGLIVTGDRFVTLGEPVA 162

Query: 267 EFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISR-ISLASINA 325
           +      +   V+ E AAI   C    VP +V R +SD+  G    +S    ++ A+  +
Sbjct: 163 KLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGGADPVSFDEFLAEAAKQS 222

Query: 326 LRVAAEFIALI 336
             V    +  +
Sbjct: 223 ALVLLSALEKL 233

Length = 234
>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily Back     alignment and domain information
>gnl|CDD|180148 PRK05584, PRK05584, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>gnl|CDD|130765 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>gnl|CDD|184794 PRK14697, PRK14697, bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>gnl|CDD|136007 PRK06698, PRK06698, bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>gnl|CDD|235950 PRK07164, PRK07164, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PRK06714236 S-adenosylhomocysteine nucleosidase; Validated 100.0
TIGR01704228 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho 100.0
PRK14697233 bifunctional 5'-methylthioadenosine/S-adenosylhomo 100.0
PRK05584230 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
PRK06698 459 bifunctional 5'-methylthioadenosine/S-adenosylhomo 100.0
PRK07164218 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
COG0775234 Pfs Nucleoside phosphorylase [Nucleotide transport 100.0
TIGR03664222 fut_nucase futalosine nucleosidase. This enzyme ca 100.0
PLN02584249 5'-methylthioadenosine nucleosidase 100.0
PRK08236212 hypothetical protein; Provisional 100.0
TIGR01705212 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh 100.0
PRK06026212 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
PRK13374233 purine nucleoside phosphorylase; Provisional 100.0
PF01048234 PNP_UDP_1: Phosphorylase superfamily; InterPro: IP 100.0
PRK05819235 deoD purine nucleoside phosphorylase; Reviewed 100.0
TIGR00107232 deoD purine-nucleoside phosphorylase, family 1 (de 100.0
PRK11178251 uridine phosphorylase; Provisional 100.0
TIGR01718245 Uridine-psphlse uridine phosphorylase. Sequences f 99.97
PRK07115258 AMP nucleosidase; Provisional 99.96
TIGR01719287 euk_UDPppase uridine phosphorylase. This model rep 99.96
PRK05634185 nucleosidase; Provisional 99.96
PRK08666261 5'-methylthioadenosine phosphorylase; Validated 99.96
TIGR01700249 PNPH purine nucleoside phosphorylase I, inosine an 99.96
TIGR01697248 PNPH-PUNA-XAPA inosine guanosine and xanthosine ph 99.96
TIGR03468212 HpnG hopanoid-associated phosphorylase. The sequen 99.95
PRK08202272 purine nucleoside phosphorylase; Provisional 99.95
PRK08292489 AMP nucleosidase; Provisional 99.94
TIGR01721266 AMN-like AMP nucleosidase, putative. The sequences 99.94
TIGR01694241 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase 99.94
COG2820248 Udp Uridine phosphorylase [Nucleotide transport an 99.94
PRK07077238 hypothetical protein; Provisional 99.93
TIGR01717477 AMP-nucleosdse AMP nucleosidase. This model repres 99.93
COG0813236 DeoD Purine-nucleoside phosphorylase [Nucleotide t 99.92
TIGR01699248 XAPA xanthosine phosphorylase. (TIGR01698, TIGR017 99.9
PRK09136245 5'-methylthioadenosine phosphorylase; Validated 99.88
PRK08564267 5'-methylthioadenosine phosphorylase II; Reviewed 99.43
PRK08931289 5'-methylthioadenosine phosphorylase; Provisional 99.41
TIGR01698237 PUNP purine nucleotide phosphorylase. methylthioad 99.36
PRK07432290 5'-methylthioadenosine phosphorylase; Provisional 99.34
PF06516314 NUP: Purine nucleoside permease (NUP); InterPro: I 99.32
PRK07823264 5'-methylthioadenosine phosphorylase; Validated 99.27
COG0005262 Pnp Purine nucleoside phosphorylase [Nucleotide tr 99.04
KOG3984286 consensus Purine nucleoside phosphorylase [Nucleot 98.91
KOG3985283 consensus Methylthioadenosine phosphorylase MTAP [ 98.77
KOG3728308 consensus Uridine phosphorylase [Nucleotide transp 98.39
COG5042349 NUP Purine nucleoside permease [Nucleotide transpo 98.08
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information 
Probab=100.00  E-value=4.6e-45  Score=332.14  Aligned_cols=229  Identities=18%  Similarity=0.237  Sum_probs=195.4

Q ss_pred             CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168           55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG  134 (345)
Q Consensus        55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G  134 (345)
                      ++||||+|| ++|++++.+.+...+    .....+++||.|+++|++|+++.||+|++|||++++.|+++|+|+.||++|
T Consensus         2 ~~IgIi~Am-~~E~~~l~~~l~~~~----~~~~~~~~~~~g~~~~~~vv~~~sGiGkvnAA~~~~~li~~f~~~~IIn~G   76 (236)
T PRK06714          2 KRIAIVAAW-EPELTYLHQSYPSER----IEKRAAWEFHFHTINDLEIISVITGVGKVSCASCVQLLISEFQPDELFMTG   76 (236)
T ss_pred             CeEEEEeeC-HHHHHHHHHhccccc----eEEEcCeEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            579999999 999999988876544    567889999999999999999999999999999999999999999999999


Q ss_pred             eecccCCCCccccEEEeccceeeCCccccccccc-CCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccccc
Q 019168          135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSE-TGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWL  213 (345)
Q Consensus       135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~-~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~  213 (345)
                      +|||+++++++|||||++++++||. +.+.+++. .++                       |.       +.+   . .+
T Consensus        77 ~aG~l~~~l~iGDvVi~~~~~~~D~-~~~~~~~~~~~~-----------------------~~-------~~~---~-~~  121 (236)
T PRK06714         77 ICGSLSNKVKNGHIVVALNAIQHDV-TAAGSGEDVFNL-----------------------YN-------GRT---A-PI  121 (236)
T ss_pred             cccCCCCCCCCCCEEEECeeeeccC-ccccCCcccccc-----------------------cC-------Ccc---c-cc
Confidence            9999999999999999999999995 33333221 000                       00       001   1 36


Q ss_pred             CCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCC
Q 019168          214 PVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNA  293 (345)
Q Consensus       214 ~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~  293 (345)
                      +.++.|.+.+.+..               ...+++.|.+ +|||.|+.+++.+++|.++++++++|||+||+|++|+.++
T Consensus       122 ~~~~~l~~~~~~~~---------------~~~~~~~G~i-~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA~vc~~~~  185 (236)
T PRK06714        122 ETTKSLVRRIKKIR---------------SYDPIHFGTF-LSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFAYVCQINK  185 (236)
T ss_pred             cCCHHHHHHHHHHh---------------ccCCeEEeEE-EecCeecCCHHHHHHHHHHCCCeEEEehHHHHHHHHHHhC
Confidence            77888887766541               0235899999 8999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcccCC
Q 019168          294 VPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALIDKNN  340 (345)
Q Consensus       294 ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~~~~  340 (345)
                      +||++||+|||.++++ ...+|++| ..|++++++++..||+.+-.+-
T Consensus       186 vP~l~IR~ISD~a~~~-~~~~~~~f~~~aa~~sa~~~~~~l~~~~~~~  232 (236)
T PRK06714        186 KPFLCLKAASDQANDK-TKEEQKIFKMLACERACEHLIAFLRVYEINV  232 (236)
T ss_pred             CCEEEEEEeccCCCCc-cccCHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            9999999999999987 77889999 9999999999999999985543

>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03664 fut_nucase futalosine nucleosidase Back     alignment and domain information
>PLN02584 5'-methylthioadenosine nucleosidase Back     alignment and domain information
>PRK08236 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative Back     alignment and domain information
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK13374 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2 Back     alignment and domain information
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD) Back     alignment and domain information
>PRK11178 uridine phosphorylase; Provisional Back     alignment and domain information
>TIGR01718 Uridine-psphlse uridine phosphorylase Back     alignment and domain information
>PRK07115 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR01719 euk_UDPppase uridine phosphorylase Back     alignment and domain information
>PRK05634 nucleosidase; Provisional Back     alignment and domain information
>PRK08666 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family Back     alignment and domain information
>TIGR03468 HpnG hopanoid-associated phosphorylase Back     alignment and domain information
>PRK08202 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK08292 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR01721 AMN-like AMP nucleosidase, putative Back     alignment and domain information
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07077 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01717 AMP-nucleosdse AMP nucleosidase Back     alignment and domain information
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01699 XAPA xanthosine phosphorylase Back     alignment and domain information
>PRK09136 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>TIGR01698 PUNP purine nucleotide phosphorylase Back     alignment and domain information
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [] Back     alignment and domain information
>PRK07823 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
4gmh_A230 Crystal Structure Of Staphylococcus Aureus 5'-Methy 3e-09
3bl6_A230 Crystal Structure Of Staphylococcus Aureus 5'- Meth 9e-09
3dp9_A231 Crystal Structure Of Vibrio Cholerae 5'-methylthioa 7e-07
4ffs_A239 Crystal Structure Of 5'-MethylthioadenosineS-Adenos 2e-05
3nm4_A230 Helicobacter Pylori Mtan Length = 230 2e-05
1zos_A230 Structure Of 5'-MethylthionadenosineS-Adenosylhomoc 2e-05
3mms_A230 Crystal Structure Of Streptococcus Pneumoniae MtaSA 6e-04
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-MethylthioadenosineS- Adenosylhomocysteine Nucleosidase Length = 230 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 55/256 (21%)
Query: 54  GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVN 113
           G  IG++ A   EE  ++ ++L    +++  I +A  +F  G +K+ +V+   +G   VN
Sbjct: 1   GSMIGIIGAME-EEVTILKNKL----TQLSEISVAHVKFYTGILKDREVVITQSGIGKVN 55
Query: 114 SGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLP 173
           + I+  +L++ F    +++ G+AG+ + SL+ GDV +   V +  +    AF  E GQ+P
Sbjct: 56  AAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDA-DATAFGYEYGQIP 114
Query: 174 ELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRR 233
           ++       PV                + + KP+                     +E   
Sbjct: 115 QM-------PVA---------------FQSSKPL---------------------IEKVS 131
Query: 234 CLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSN 292
            +     L  +  +IV     + D F+ +   R+ + K F N   V+ E+ AI   C   
Sbjct: 132 QVVQQQQLTAKVGLIV-----SGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQF 186
Query: 293 AVPSIVFRGVSDLGGG 308
            VP +V R VSDL  G
Sbjct: 187 NVPFVVVRAVSDLANG 202
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'- MethylthioadenosineS-Adenosylhomocysteine Nucleosidase In Complex With Formycin A Length = 230 Back     alignment and structure
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae 5'-methylthioadenosine/s-adenosyl Homocysteine Nucleosidase (mtan) Complexed With Butylthio-dadme- Immucillin A Length = 231 Back     alignment and structure
>pdb|4FFS|A Chain A, Crystal Structure Of 5'-MethylthioadenosineS-Adenosylhomocysteine Nucleosidase From Helicobacter Pylori With Butyl-Thio-Dadme- Immucillin-A Length = 239 Back     alignment and structure
>pdb|3NM4|A Chain A, Helicobacter Pylori Mtan Length = 230 Back     alignment and structure
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine Nucleosidase From S. Pneumoniae With A Transition-State Inhibitor Mt-Imma Length = 230 Back     alignment and structure
>pdb|3MMS|A Chain A, Crystal Structure Of Streptococcus Pneumoniae MtaSAH NUCLEO Complex With 8-Aminoadenine Length = 230 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 4e-27
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 3e-26
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 2e-25
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 3e-25
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 2e-24
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 3e-22
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 7e-16
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 6e-05
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 2e-04
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Length = 230 Back     alignment and structure
 Score =  106 bits (265), Expect = 4e-27
 Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 57/283 (20%)

Query: 57  IGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGI 116
           IG++ A P EE A +   L   N++     + G  ++ G I + +V+ V +G   V S +
Sbjct: 3   IGIIAAMP-EELAYLVQHL--DNTQE--QVVLGNTYHTGTIASHEVVLVESGIGKVMSAM 57

Query: 117 TVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELD 176
           +V IL D F +  +++ G+AG+    ++ GDV +   +A+                   D
Sbjct: 58  SVAILADHFQVDALINTGSAGAVAEGIAVGDVVIADKLAY------------------HD 99

Query: 177 FGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRRCL 235
                F                  Y+ G+  ++  +   D  +     + L  L+     
Sbjct: 100 VDVTAF-----------------GYAYGQMAQQPLYFESDKTFVAQIQESLSQLD----- 137

Query: 236 NDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNAV 294
                        +GL  +T D F+      E +   F  V  V+ E AAI  A  +  +
Sbjct: 138 ---------QNWHLGL-IATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNL 187

Query: 295 PSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALID 337
           P +V R +SD       +     I  A   + +V   F+  +D
Sbjct: 188 PVLVIRAMSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKALD 230
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} PDB: 3nm5_A* 3nm4_A* Length = 230 Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} Length = 231 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} Length = 233 Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Length = 230 Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* Length = 234 Back     alignment and structure
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Length = 267 Back     alignment and structure
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Length = 254 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} PDB: 3tl6_A* Length = 242 Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Length = 484 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
4g41_A236 MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, 100.0
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 100.0
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 100.0
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 100.0
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 100.0
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 100.0
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 100.0
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 100.0
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 100.0
1je0_A236 MTAP;, 5'-methylthioadenosine phosphorylase; alpha 100.0
2b94_A267 Purine nucleoside phosphorylase; SGPP, structural 100.0
1odk_A235 Purine nucleoside phosphorylase; alpha-beta protei 100.0
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 100.0
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 100.0
3ddo_A253 Urdpase, upase, uridine phosphorylase; transferase 100.0
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 99.98
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 99.97
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 99.97
3phc_A275 Purine nucleoside phosphorylase; PNP,immucillin, t 99.97
3mb8_A279 Purine nucleoside phosphorylase; PNP, immucillin H 99.97
1ybf_A268 AMP nucleosidase; structural genomics, protein str 99.97
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 99.96
3qpb_A282 Uridine phosphorylase; hexamer, NP-I superfamily, 99.96
3euf_A328 Uridine phosphorylase 1; nucleoside phosphorylase, 99.96
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 99.96
3p0f_A297 Uridine phosphorylase 2; transferase; HET: BAU; 1. 99.96
3bje_A349 Nucleoside phosphorylase, putative; uridine phosph 99.96
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 99.95
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 99.93
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 99.93
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 99.92
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 99.92
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 99.91
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 99.91
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 99.9
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 99.9
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 99.9
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 99.89
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 99.87
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes} Back     alignment and structure
Probab=100.00  E-value=1.4e-46  Score=341.72  Aligned_cols=230  Identities=26%  Similarity=0.395  Sum_probs=202.7

Q ss_pred             CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEE
Q 019168           53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVH  132 (345)
Q Consensus        53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~  132 (345)
                      ..++||||||| ++|++++.+.|+..+    ....++++|++|+++|++|+++.+|+|++||+++++.|+..|+++.+|+
T Consensus         4 ~~MkIgII~Al-~~E~~~l~~~l~~~~----~~~~~~~~~~~G~~~g~~Vvv~~~G~G~~~aa~~~~~l~~~~~~~~ii~   78 (236)
T 4g41_A            4 GSMKIGIIAAM-EEELSLLLANLLDAQ----EHQVLSKTYYTGRFGKHELILVQSGVGKVMSAMTVAILVEHFKAQAIIN   78 (236)
T ss_dssp             CSCEEEEEECC-HHHHHHHHHTCEEEE----EEEETTEEEEEEEETTEEEEEEECCSHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEEccC-HHHHHHHHHhccCCc----eEecCCcEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            45799999999 999999998887765    4667889999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168          133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW  212 (345)
Q Consensus       133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~  212 (345)
                      +|+|||+++++++|||||++.+++||. +.+.+|+..++.|.                                 .+. +
T Consensus        79 ~G~aGgl~~~i~~GDvvi~~~~i~~d~-~~~~~~~~~~~~~~---------------------------------~~~-~  123 (236)
T 4g41_A           79 TGSAGAVASHLAIGDVVVADRLVYHDV-DATAFGYAYGQMAG---------------------------------QPL-Y  123 (236)
T ss_dssp             EEEECBCSTTCCTTCEEEEEEEEESSC-BCGGGTCCTTCCTT---------------------------------SCS-S
T ss_pred             EeeecCCCCCCCCCeEEEEeeeEEcCC-CCCccCCcCCcCCC---------------------------------CCc-c
Confidence            999999999999999999999999996 44455554444321                                 111 4


Q ss_pred             cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHh
Q 019168          213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLS  291 (345)
Q Consensus       213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~  291 (345)
                      ++.|+.|.+.+.+..+             ..++++|.|++ +|||.|+.+++.+++|++++ +++++|||++|++++|+.
T Consensus       124 ~~~d~~l~~~~~~~~~-------------~~~~~~~~G~i-~S~d~~~~~~~~~~~l~~~~~g~~~veME~aa~~~va~~  189 (236)
T 4g41_A          124 YDCDPQFVAIFKQVLK-------------HEKTNGQVGLI-ATGDSFVAGQDKIDQIKTAFSNVLAVEMEGAAIAQAAHT  189 (236)
T ss_dssp             EECCHHHHHHHHHHHH-------------HTTCCEEEEEE-EECSBCCCCHHHHHHHHHHSTTCCEEESSHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHH-------------hcCCCeeeceE-EecCCcccCHHHHHHHHHHcCCCeEEechHHHHHHHHHH
Confidence            6789999988876521             12578999999 89999999999999999998 999999999999999999


Q ss_pred             CCCCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcc
Q 019168          292 NAVPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALID  337 (345)
Q Consensus       292 ~~ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~  337 (345)
                      +++||++||+|||+++++ ++.+|++| ..|+++++++++.||++|+
T Consensus       190 ~~~p~~~Ir~ISD~ad~~-~~~~~~~~~~~Aa~~~a~~v~~~l~~lP  235 (236)
T 4g41_A          190 AGKPFIVVRAMSDTAAHD-ANITFDQFIIEAGKRSAQILMTFLENLP  235 (236)
T ss_dssp             TTCCEEEEEEESSCTTCC-CCSCHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCCCEEEEEEEEeCCCCc-CcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999998 88889999 9999999999999999986
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1 Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A* Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A* Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Back     alignment and structure
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Back     alignment and structure
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Back     alignment and structure
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Back     alignment and structure
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Back     alignment and structure
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Back     alignment and structure
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ... Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A* Back     alignment and structure
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A* Back     alignment and structure
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A* Back     alignment and structure
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Back     alignment and structure
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Back     alignment and structure
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A Back     alignment and structure
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei} Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Back     alignment and structure
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0 Back     alignment and structure
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Back     alignment and structure
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1jysa_230 c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhom 7e-18
d1t8sa_477 c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [ 1e-09
d2ac7a1231 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase 5e-06
d1ybfa_246 c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetai 6e-05
d1vhwa_237 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 1e-04
d1rxya_250 c.56.2.1 (A:) Uridine phosphorylase {Escherichia c 6e-04
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 79.2 bits (194), Expect = 7e-18
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 55/281 (19%)

Query: 57  IGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGI 116
           IG++ A   EE  L+  ++   N +   I L G     G++   +V  + +G   V + +
Sbjct: 3   IGIIGAME-EEVTLLRDKI--ENRQT--ISLGGCEIYTGQLNGTEVALLKSGIGKVAAAL 57

Query: 117 TVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELD 176
              +LL+      +++ G+AG    +L  GD+ V+   A        AF  E GQLP   
Sbjct: 58  GATLLLEHCKPDVIINTGSAGGLAPTLKVGDI-VVSDEARYHDADVTAFGYEYGQLPGCP 116

Query: 177 FGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLN 236
                                                  D +    A             
Sbjct: 117 A----------------------------------GFKADDKLIAAAEA----------- 131

Query: 237 DTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNAVP 295
              C+ E     V     + D F++ +     +   F     V+ E+ AI   C +  VP
Sbjct: 132 ---CIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVP 188

Query: 296 SIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALI 336
            +V R +SD+      L     +++A+  +  +    +  +
Sbjct: 189 FVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKL 229
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Length = 477 Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Length = 231 Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 246 Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Length = 237 Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d1jysa_230 5'-Methylthioadenosine/S-Adenosylhomocysteine nucl 100.0
d1je0a_234 5'-deoxy-5'-methylthioadenosine phosphorylase {Arc 100.0
d1rxya_250 Uridine phosphorylase {Escherichia coli [TaxId: 56 100.0
d2ac7a1231 Purine nucleoside phosphorylase, PNP {Bacillus ant 100.0
d1vhwa_237 Purine nucleoside phosphorylase, PNP {Vibrio chole 100.0
d1odka_234 Purine nucleoside phosphorylase, PNP {Thermus ther 99.98
d1q1ga_243 Putative uridine phosphorylase {Plasmodium falcipa 99.97
d1ybfa_246 AMP nucleosidase {Bacteroides thetaiotaomicron [Ta 99.95
d1t8sa_477 AMP nucleosidase {Escherichia coli [TaxId: 562]} 99.95
d1v4na_266 5'-deoxy-5'-methylthioadenosine phosphorylase {Sul 99.4
d1cb0a_273 5'-deoxy-5'-methylthioadenosine phosphorylase {Hum 99.33
d1g2oa_262 Purine nucleoside phosphorylase, PNP {Mycobacteriu 99.32
d3pnpa_284 Purine nucleoside phosphorylase, PNP {Cow (Bos tau 99.31
d1qe5a_266 Purine nucleoside phosphorylase, PNP {Cellulomonas 99.23
d1vmka_265 Purine nucleoside phosphorylase, PNP {Thermotoga m 99.18
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-42  Score=310.93  Aligned_cols=228  Identities=22%  Similarity=0.350  Sum_probs=196.7

Q ss_pred             CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168           55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG  134 (345)
Q Consensus        55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G  134 (345)
                      ++||||||| ++|.+.+.+.+...+    ....++++||+|+++|++|+++.+|+|++||+.+++.|+.+|+|+.+|++|
T Consensus         1 m~IgIi~Al-~~E~~~l~~~l~~~~----~~~~~~~~~~~g~~~g~~v~v~~~G~G~~~aa~~~~~li~~~~~~~ii~~G   75 (230)
T d1jysa_           1 MKIGIIGAM-EEEVTLLRDKIENRQ----TISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTG   75 (230)
T ss_dssp             CEEEEEESC-HHHHHHHHHHCEEEE----EEEETTEEEEEEEETTEEEEEEECCSSHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             CEEEEEeeC-HHHHHHHHHhcccCe----EEEeCCeEEEEEEECCEEEEEEECCCChhHHHHHHHHHHHhcCCcEEEEec
Confidence            579999999 999999998887655    466788999999999999999999999999999999999999999999999


Q ss_pred             eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168          135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP  214 (345)
Q Consensus       135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~  214 (345)
                      +|||+++++++||||+++.++++|. +.+.+++..+++|..                              |   . +|+
T Consensus        76 ~aG~l~~~~~~Gdvvi~~~~~~~~~-~~~~~~~~~~~~p~~------------------------------~---~-~~~  120 (230)
T d1jysa_          76 SAGGLAPTLKVGDIVVSDEARYHDA-DVTAFGYEYGQLPGC------------------------------P---A-GFK  120 (230)
T ss_dssp             EEEECSTTCCTTCEEEEEEEEETTC-BCGGGTCCTTCCTTS------------------------------C---S-SEE
T ss_pred             ccCCccccccCCCEEEEeEEEEecc-cccccccccceeccc------------------------------e---e-ccc
Confidence            9999999999999999999999884 566666555443321                              1   1 367


Q ss_pred             CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHhCC
Q 019168          215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNA  293 (345)
Q Consensus       215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~~~  293 (345)
                      .|+.|.+.+.+..+             ..+.+++.|.+ +|||.|+.+.+.++++.+++ +++++|||++|++++|+.++
T Consensus       121 ~~~~l~~~~~~~~~-------------~~~~~~~~g~~-~t~~~~~~~~~~~~~l~~~~~~a~~vdME~aa~a~va~~~~  186 (230)
T d1jysa_         121 ADDKLIAAAEACIA-------------ELNLNAVRGLI-VSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFN  186 (230)
T ss_dssp             CCHHHHHHHHHHHH-------------HTTCCEEEEEE-EECSBCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHH-------------hcCCCeeEeEE-eccCceeechHHHHHHHHhcccceeeechHHHHHHHHHHcC
Confidence            88888887766421             12468899999 89999999999999999987 99999999999999999999


Q ss_pred             CCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcc
Q 019168          294 VPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALID  337 (345)
Q Consensus       294 ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~  337 (345)
                      +||++||+|||+++++ ...+|++| ..|++++++++.++|+.|+
T Consensus       187 ip~~~ir~ISD~~~~~-~~~~~~~~~~~a~~~~~~~i~~~i~~l~  230 (230)
T d1jysa_         187 VPFVVVRAISDVADQQ-SHLSFDEFLAVAAKQSSLMVESLVQKLA  230 (230)
T ss_dssp             CCEEEEEEEEEETTC-----CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEEcCCCCc-cccCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988 77789998 9999999999999999874
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure