Citrus Sinensis ID: 019208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHccccccHccccccEEEccccccccccccccccccccccHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHEccccc
Coil and Loop (DISEMBL)
maaeedvdlsslKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARimavpdlahtscgirqlegvglvdkngtplsgwsrnvdlssfngpdedtwigiskqlgssdeqdgAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI
Flexible Loop (DISEMBL)
maaeedvdlsslksqIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVImaesetavekekvtlgqeeirKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRqrqraaeneqelcrvkrdfeSLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI
Low Complexity Region (SEG)
MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI
Disordered region (IsUnstruct)
***************IIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKD*****KKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISK********DGAYIGELLKSVQMVTDVMEVLVKRVIMAE************************************FALGTNGI*****************************CRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAK***********************RLTALLD****QLLAM**************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************************************************************************************************AL*****
Disordered Region (DISEMBL)
**********SLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVED*****************ELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI
Disordered Region (DISPRO)
*****************ETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAE*EQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEExxxxxxxxxxxxxxxxxxxxxALGTNGIxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCKVMALNASNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
O95153	1857	Peripheral-type benzodiaz	yes	no	0.447	0.082	0.275	0.0002

>sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine receptor-associated protein 1 OS=Homo sapiens GN=BZRAP1 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 35/189 (18%)

Query: 168 KRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVE 227
           +RV   ESE + +++K    ++E RKK  + E + L+L + +          NE  +   
Sbjct: 335 QRVQQLESELSKKRKKCESLEQEARKKQRRCEELELQLRQAQ----------NENAR--- 381

Query: 228 DLVEETSRQRQRAAENEQ----------ELCRVKRDFESLKNYVSSLISVRETL------ 271
            LVEE SR   RA E EQ          +L  V ++ +S       L S  E+L      
Sbjct: 382 -LVEENSRLSGRATEKEQVEWENAELRGQLLGVTQERDSALRKSQGLQSKLESLEQVLKH 440

Query: 272 ---LSSEKQFQTIERLFERLVAKTTQLEGEKMQK-EAEVQKLMEENVR-LTALLDKKEAQ 326
              ++  +Q   +E    RL  +  Q E  ++Q+ +AE Q+  E  V+ L + LD  +A+
Sbjct: 441 MREVAQRRQQLEVEHEQARLSLREKQEEVRRLQQAQAEAQREHEGAVQLLESTLDSMQAR 500

Query: 327 LLAMNEQCK 335
           +  + EQC+
Sbjct: 501 VRELEEQCR 509

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
255579815	344	conserved hypothetical protein [Ricinus	1.0	1.0	0.895	1e-174
224133738	342	predicted protein [Populus trichocarpa]	0.991	0.997	0.850	1e-160
224097162	341	predicted protein [Populus trichocarpa]	0.988	0.997	0.847	1e-160
359476831	399	PREDICTED: uncharacterized protein LOC10	0.997	0.859	0.822	1e-159
356502920	341	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.805	1e-157
388522773	344	unknown [Lotus japonicus]	1.0	1.0	0.779	1e-157
449499991	344	PREDICTED: uncharacterized LOC101204866	1.0	1.0	0.811	1e-157
356559310	342	PREDICTED: uncharacterized protein LOC10	0.994	1.0	0.799	1e-157
449457526	344	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.808	1e-156
255648135	341	unknown [Glycine max]	0.991	1.0	0.796	1e-155

>gi|255579815|ref|XP_002530745.1| conserved hypothetical protein [Ricinus communis] gi|223529709|gb|EEF31651.1| conserved hypothetical protein [Ricinus communis]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/344 (89%), Positives = 328/344 (95%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MAA EDVDLS+LKSQ+ +THEIWKQEMER Q QVDVLQ KLMEVK CI+ SEEDAKKELE
Sbjct: 1   MAAGEDVDLSNLKSQLNDTHEIWKQEMERRQSQVDVLQAKLMEVKACIQGSEEDAKKELE 60

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGI+QLEGVGL+D++GTPLS WSRNVDL
Sbjct: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIKQLEGVGLIDRDGTPLSSWSRNVDL 120

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           SSF+ PDE+TWI +S+Q GS DEQD AYIGELLKSVQMVTDVME LVKRVIMAESETA+E
Sbjct: 121 SSFDSPDEETWIRLSEQQGSFDEQDEAYIGELLKSVQMVTDVMEALVKRVIMAESETAIE 180

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKVTLGQEEI+KKA QIE+MS KLEEME+FALGTNGIL+EMRQRVEDLVEETSRQRQRA
Sbjct: 181 KEKVTLGQEEIKKKAIQIESMSSKLEEMEQFALGTNGILSEMRQRVEDLVEETSRQRQRA 240

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENEQELCRVKRDFESLK+YVSSLISVRETLLSSEKQFQTIERLFERLVAKT+QLEGEKM
Sbjct: 241 AENEQELCRVKRDFESLKSYVSSLISVRETLLSSEKQFQTIERLFERLVAKTSQLEGEKM 300

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMAL+ASNI
Sbjct: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALSASNI 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133738|ref|XP_002327668.1| predicted protein [Populus trichocarpa] gi|222836753|gb|EEE75146.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/342 (85%), Positives = 311/342 (90%), Gaps = 1/342 (0%)

Query: 3   AEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVL 62
           A ED DL SL  Q+ E HE WKQEMER Q QVDVLQ KLMEVKTC++ SE DAKKELEVL
Sbjct: 2   AGEDGDLPSLTLQVSEPHETWKQEMERRQSQVDVLQVKLMEVKTCMQGSEGDAKKELEVL 61

Query: 63  WRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSS 122
           WRRVKTTATLLTYLKSKAR+MAVPDLAHTSCGI++LEGVGLVD++GTPLS WSRNVDL S
Sbjct: 62  WRRVKTTATLLTYLKSKARVMAVPDLAHTSCGIKELEGVGLVDRSGTPLSSWSRNVDLPS 121

Query: 123 FNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKE 182
           F GPDE+  + + +Q GS DEQD AYIGELLK VQMV++VME LVKRVI+AESETAVEK+
Sbjct: 122 F-GPDEEACMRLGQQQGSYDEQDEAYIGELLKCVQMVSNVMEGLVKRVIIAESETAVEKD 180

Query: 183 KVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAE 242
           KVTL QEE R+KA QIENMS KLEEMERFALGTN ILNEMRQRVEDLVEETSRQRQRAAE
Sbjct: 181 KVTLSQEENRRKAIQIENMSSKLEEMERFALGTNVILNEMRQRVEDLVEETSRQRQRAAE 240

Query: 243 NEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK 302
           NEQELCRVKRDFESLK+YVSSLISVRETLLSSE+QFQTIERLFERLVAKTTQLEGEKMQK
Sbjct: 241 NEQELCRVKRDFESLKSYVSSLISVRETLLSSERQFQTIERLFERLVAKTTQLEGEKMQK 300

Query: 303 EAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           E EVQKLMEENVRL+ALLDKKEAQLLAMNEQCKVMALNASNI
Sbjct: 301 ETEVQKLMEENVRLSALLDKKEAQLLAMNEQCKVMALNASNI 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097162|ref|XP_002310858.1| predicted protein [Populus trichocarpa] gi|222853761|gb|EEE91308.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/342 (84%), Positives = 316/342 (92%), Gaps = 2/342 (0%)

Query: 3   AEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVL 62
           A EDVDLSSL  Q+ ET E WKQEMER Q QVDVLQ KLMEVK C++ SEE AK E+EVL
Sbjct: 2   AGEDVDLSSLTLQVGETQETWKQEMERRQSQVDVLQVKLMEVKACVQGSEEHAK-EMEVL 60

Query: 63  WRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSS 122
           WRRVKTT+TLLTYLK+KAR+ AVP+LAHTSCGI++LEGVGLVD+NGTPLS WSR+VDLSS
Sbjct: 61  WRRVKTTSTLLTYLKAKARVFAVPELAHTSCGIKELEGVGLVDRNGTPLSSWSRDVDLSS 120

Query: 123 FNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKE 182
           F GPDE++ I + KQ GS DEQD AYIGELLKSVQMV+DVME LVKRVIMAESETA+EK+
Sbjct: 121 F-GPDEESCIRLRKQQGSYDEQDEAYIGELLKSVQMVSDVMEGLVKRVIMAESETALEKD 179

Query: 183 KVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAE 242
           KVTLGQEEIR+KA QI+NMSLKLEEMERFALGTNGILN+MR+RVEDLVEETSRQRQ AAE
Sbjct: 180 KVTLGQEEIRRKAIQIDNMSLKLEEMERFALGTNGILNDMRKRVEDLVEETSRQRQCAAE 239

Query: 243 NEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK 302
           NEQELCRVKRDFESLK+YVSSLISVRETLLSSE+QFQTIERLFERLVAKTTQLEGEKMQK
Sbjct: 240 NEQELCRVKRDFESLKSYVSSLISVRETLLSSERQFQTIERLFERLVAKTTQLEGEKMQK 299

Query: 303 EAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           E EVQKLMEENVRL+ALLDKKEAQLLAMNEQCK+MALNASNI
Sbjct: 300 ETEVQKLMEENVRLSALLDKKEAQLLAMNEQCKLMALNASNI 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476831|ref|XP_002268827.2| PREDICTED: uncharacterized protein LOC100262595 [Vitis vinifera]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/343 (82%), Positives = 313/343 (91%)

Query: 2   AAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEV 61
            AEED+DLS+L SQ+ +TH +WK+EME+ Q QVDVLQ KL+EV+ CI+ SEED+KKEL+V
Sbjct: 57  PAEEDIDLSTLTSQLSQTHLVWKKEMEQRQTQVDVLQTKLVEVRACIQGSEEDSKKELDV 116

Query: 62  LWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLS 121
           LWRRVKT A LLTYLKSKARIMAVP LAHTSCGI+QLEGVGLVDKNGTPLS WS+N DLS
Sbjct: 117 LWRRVKTMAILLTYLKSKARIMAVPHLAHTSCGIKQLEGVGLVDKNGTPLSSWSKNADLS 176

Query: 122 SFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEK 181
           SF+  D+++W+ I K+ GS DEQDGAYIGE+LKSVQMV DVME LVKRVIMAE+ETAVEK
Sbjct: 177 SFDSLDDESWLEIRKRHGSFDEQDGAYIGEILKSVQMVADVMETLVKRVIMAEAETAVEK 236

Query: 182 EKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAA 241
           EKVT  QEEI+KKA+QIENMS KLEEMERFALGTN ILNEMRQRVEDLV+ETSRQRQRAA
Sbjct: 237 EKVTFSQEEIKKKAHQIENMSSKLEEMERFALGTNCILNEMRQRVEDLVDETSRQRQRAA 296

Query: 242 ENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQ 301
           ENEQEL RVK+DFESLK+YVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEK Q
Sbjct: 297 ENEQELSRVKQDFESLKSYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKKQ 356

Query: 302 KEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           KE EVQKLMEENVRL+ALLDKKEAQLLAMNEQ K+MAL++SNI
Sbjct: 357 KETEVQKLMEENVRLSALLDKKEAQLLAMNEQYKLMALSSSNI 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502920|ref|XP_003520262.1| PREDICTED: uncharacterized protein LOC100787535 [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/344 (80%), Positives = 318/344 (92%), Gaps = 3/344 (0%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MAA+ED+   SLKS + +++E WKQEMERSQ QVDVLQ ++MEVK  I+ S+EDAKKELE
Sbjct: 1   MAADEDM---SLKSNLSQSNETWKQEMERSQSQVDVLQARIMEVKAQIQGSKEDAKKELE 57

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTT+TLLTYLKSK+RIMAVP LAHTSCGI++L+GVGLVDK+G PLSGWSRNVDL
Sbjct: 58  VLWRRVKTTSTLLTYLKSKSRIMAVPHLAHTSCGIKKLDGVGLVDKDGIPLSGWSRNVDL 117

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           SSF+ PDE++WIGI++Q GS DEQD  YIGE+LKSVQMVTDVME LVKRV++AESET +E
Sbjct: 118 SSFDDPDEESWIGINRQHGSLDEQDAVYIGEILKSVQMVTDVMESLVKRVLLAESETTIE 177

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKV LGQEEI +K+ Q+ENMS+KLEEMERFALGTNGILN+MRQRV DLVEET+RQRQRA
Sbjct: 178 KEKVILGQEEIMQKSAQLENMSMKLEEMERFALGTNGILNDMRQRVADLVEETTRQRQRA 237

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENE+EL RVKR+FESLK+YVSSLI+VRETLLSSEKQFQTIE+LFERLV KTTQLEGEKM
Sbjct: 238 AENEEELSRVKREFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKM 297

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKEAEVQKLMEENVRL+ALLDKKEAQLLA+NEQCK+MAL+ASN+
Sbjct: 298 QKEAEVQKLMEENVRLSALLDKKEAQLLALNEQCKMMALSASNM 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522773|gb|AFK49448.1| unknown [Lotus japonicus]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/344 (77%), Positives = 317/344 (92%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MA +ED+ +S++KS++ ++HE WKQ MER+Q QVD LQ KLMEVK CI+ S+ED KKELE
Sbjct: 1   MATDEDIGMSAMKSKLSQSHETWKQGMERNQSQVDALQAKLMEVKACIQGSKEDTKKELE 60

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTTATLLTYLKSKARIMAVP LAHTSCGI++L+G+GLVDK+G PLSGWS+NVDL
Sbjct: 61  VLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKNVDL 120

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           +SF+GPD+++WIGIS Q G  DEQD  YIGE+LKSVQMV+DVME LVKRV++AESET +E
Sbjct: 121 TSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAESETTIE 180

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEK +LGQEEI +K+ Q+ENMS+KLEEMERFALGTN ILN+MRQRV DLVEET+RQRQRA
Sbjct: 181 KEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTRQRQRA 240

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENE+ELCRVK++FESLK+YVSSLI+VRETLLSSEKQFQTIE+LFERLV KTTQLEGEKM
Sbjct: 241 AENEEELCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKM 300

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKEAEVQKLMEENVRL+ALLDKKEAQ+LA+NEQCK+MAL++S++
Sbjct: 301 QKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMALSSSHM 344

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499991|ref|XP_004160972.1| PREDICTED: uncharacterized LOC101204866 [Cucumis sativus]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/344 (81%), Positives = 315/344 (91%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MA+EED+DLSSLK Q+ ET+E WKQEME+ Q +VDVLQ KL+EVK  I+ SEED++KELE
Sbjct: 1   MASEEDLDLSSLKIQLSETNETWKQEMEKRQSEVDVLQAKLIEVKASIEGSEEDSRKELE 60

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTT+TLLTYLKSKAR++AVP LAH+SCGI+ LEGVGLVDK GTPLSGWS+++DL
Sbjct: 61  VLWRRVKTTSTLLTYLKSKARMLAVPHLAHSSCGIKHLEGVGLVDKTGTPLSGWSKSIDL 120

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           S F+G +E++ IGI K  G  DEQD  YIG++LKSVQMV+DVME LVKRVI+AESETA E
Sbjct: 121 SPFDGTEEESLIGIGKPCGLLDEQDAVYIGQILKSVQMVSDVMEALVKRVILAESETAEE 180

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKV LG+EEI+KK+ QIENMS KLEEME+FA+GTNGILNEMRQRVEDLVEET RQRQRA
Sbjct: 181 KEKVHLGREEIKKKSIQIENMSSKLEEMEQFAVGTNGILNEMRQRVEDLVEETCRQRQRA 240

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENEQELCRVKRDFESLK+YVSSLI+VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM
Sbjct: 241 AENEQELCRVKRDFESLKSYVSSLITVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKE EVQKLMEENVRL+ALLDKKEAQLLAMNEQCKVMAL+AS+I
Sbjct: 301 QKEVEVQKLMEENVRLSALLDKKEAQLLAMNEQCKVMALSASHI 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559310|ref|XP_003547943.1| PREDICTED: uncharacterized protein LOC100801613 [Glycine max]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/344 (79%), Positives = 319/344 (92%), Gaps = 2/344 (0%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MAA+ED  +S+LKS++ +++E WK+EMERSQ QVDVLQ ++MEVK  I+ SEEDAKKELE
Sbjct: 1   MAADED--MSALKSKLSQSNETWKKEMERSQSQVDVLQARIMEVKAQIQGSEEDAKKELE 58

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTT+TLLTYLKSKARIMAVP LAHTSCGI++L+GVGLVDK+G PLSGWSRNVDL
Sbjct: 59  VLWRRVKTTSTLLTYLKSKARIMAVPHLAHTSCGIKKLDGVGLVDKDGIPLSGWSRNVDL 118

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
            SF+ PDE++WIGI++Q GS D+QD  YIGE+LKSVQMVTDVME LVKRV++AESET  E
Sbjct: 119 CSFDDPDEESWIGINRQHGSLDQQDAVYIGEILKSVQMVTDVMEALVKRVLLAESETTFE 178

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKV+LGQEEI +K+ Q+ENMS+KLEEMERFALGTNGILN+MRQ+V DLVEET+RQRQRA
Sbjct: 179 KEKVSLGQEEIMRKSAQLENMSMKLEEMERFALGTNGILNDMRQKVADLVEETTRQRQRA 238

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENE+EL RVKR+FESLK+YVSSLI+VRETLLSSEKQFQTIE+LFERLV KTTQLEGEKM
Sbjct: 239 AENEEELSRVKREFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKM 298

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKEAEVQKLMEENVRL+ALLDKKEAQLLA+NEQCK+MAL+ASN+
Sbjct: 299 QKEAEVQKLMEENVRLSALLDKKEAQLLALNEQCKMMALSASNM 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457526|ref|XP_004146499.1| PREDICTED: uncharacterized protein LOC101204866 [Cucumis sativus]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/344 (80%), Positives = 314/344 (91%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MA+EED+DLSSLK Q+ ET+E WKQEME+ Q +V VLQ KL+EVK  I+ SEED++KELE
Sbjct: 1   MASEEDLDLSSLKIQLSETNETWKQEMEKRQSEVGVLQAKLIEVKASIEGSEEDSRKELE 60

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTT+TLLTYLKSKAR++AVP LAH+SCGI+ LEGVGLVDK GTPLSGWS+++DL
Sbjct: 61  VLWRRVKTTSTLLTYLKSKARMLAVPHLAHSSCGIKHLEGVGLVDKTGTPLSGWSKSIDL 120

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           S F+G +E++ IGI K  G  DEQD  YIG++LKSVQMV+DVME LVKRVI+AESETA E
Sbjct: 121 SPFDGTEEESLIGIGKPCGLLDEQDAVYIGQILKSVQMVSDVMEALVKRVILAESETAEE 180

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKV LG+EEI+KK+ QIENMS KLEEME+FA+GTNGILNEMRQRVEDLVEET RQRQRA
Sbjct: 181 KEKVHLGREEIKKKSIQIENMSSKLEEMEQFAVGTNGILNEMRQRVEDLVEETCRQRQRA 240

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENEQELCRVKRDFESLK+YVSSLI+VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM
Sbjct: 241 AENEQELCRVKRDFESLKSYVSSLITVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKE EVQKLMEENVRL+ALLDKKEAQLLAMNEQCKVMAL+AS+I
Sbjct: 301 QKEVEVQKLMEENVRLSALLDKKEAQLLAMNEQCKVMALSASHI 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648135|gb|ACU24522.1| unknown [Glycine max]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/344 (79%), Positives = 315/344 (91%), Gaps = 3/344 (0%)

Query: 1   MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELE 60
           MAA+ED+   SLKS + +++E WKQEMERSQ QVDVLQ ++MEVK  I+ S+EDAKKELE
Sbjct: 1   MAADEDM---SLKSNLSQSNETWKQEMERSQSQVDVLQARIMEVKAQIQGSKEDAKKELE 57

Query: 61  VLWRRVKTTATLLTYLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDL 120
           VLWRRVKTT+TLLTYLKSK+RIMAVP LAHTSCGI++L+GVGLVDK+G PLSGWSRNVDL
Sbjct: 58  VLWRRVKTTSTLLTYLKSKSRIMAVPHLAHTSCGIKKLDGVGLVDKDGIPLSGWSRNVDL 117

Query: 121 SSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVE 180
           SSF+ PDE++WIGI++Q GS DEQD  YIGE+LKSVQMVTDVME LVKRV++AESET +E
Sbjct: 118 SSFDDPDEESWIGINRQHGSLDEQDAVYIGEILKSVQMVTDVMESLVKRVLLAESETTIE 177

Query: 181 KEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRA 240
           KEKV LGQEEI +K+ Q+ENMS+KLEEMERFALGTNGILN+MRQRV DLVEET+RQRQRA
Sbjct: 178 KEKVILGQEEIMQKSAQLENMSMKLEEMERFALGTNGILNDMRQRVADLVEETTRQRQRA 237

Query: 241 AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKM 300
           AENE+EL RVKR+ E LK+YVSSLI+VRETLL SEKQFQTIE+LFERLV KTTQLEGEKM
Sbjct: 238 AENEEELSRVKRELEFLKSYVSSLITVRETLLFSEKQFQTIEKLFERLVGKTTQLEGEKM 297

Query: 301 QKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
           QKEAEVQKLMEENVRL+ALLDKKEAQLLA+NEQCK+MAL+ASN+
Sbjct: 298 QKEAEVQKLMEENVRLSALLDKKEAQLLALNEQCKMMALSASNM 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2060944	338	AT2G17990 [Arabidopsis thalian	0.965	0.982	0.611	1.6e-102
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.514	0.294	0.326	9.5e-07
CGD|CAL0002211	1038	orf19.3100 [Candida albicans (	0.906	0.300	0.198	7e-06
UNIPROTKB|Q5A0Z6	1038	CaO19.3100 "Putative uncharact	0.906	0.300	0.198	7e-06
ASPGD|ASPL0000038802	1207	pcpA [Emericella nidulans (tax	0.514	0.146	0.232	1.1e-05
ZFIN|ZDB-GENE-100917-2	4530	plecb "plectin b" [Danio rerio	0.424	0.032	0.269	1.5e-05
UNIPROTKB|F1SCX7	1828	KIF20B "Uncharacterized protei	0.909	0.171	0.219	1.7e-05
MGI|MGI:1930136	1022	Pmfbp1 "polyamine modulated fa	0.508	0.171	0.257	1.9e-05
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.953	0.320	0.191	2.5e-05
UNIPROTKB|F1SS65	1603	LOC100737032 "Uncharacterized	0.953	0.204	0.221	2.5e-05

TAIR|locus:2060944 AT2G17990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 214/350 (61%), Positives = 278/350 (79%)

Query:     1 MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIK-DSEEDAKKEL 59
             MA +E+ D+S+  S   E  EIW+ E+E  +FQVD L+ +L++VK  ++  SEEDA+KEL
Sbjct:     1 MAGKEETDVSAQGSLTREATEIWRSELESRRFQVDSLEAELVDVKAYLEFGSEEDARKEL 60

Query:    60 EVLWRRVKTTATLLTYLKSKARIMAVPD-LAHTSCGIRQLE---GVGLVDKNG-TPLSGW 114
              VL  RV++TAT+L YL+SKAR++A+PD LA+ SCG+ Q+E   G+ LV+K+G +  S  
Sbjct:    61 GVLSGRVRSTATMLRYLRSKARVLAIPDDLANVSCGVEQIEELKGLNLVEKDGGSSSSDG 120

Query:   115 SRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAE 174
             +RN +      P+   + G    LG    +DGAY  E+L+S++MVTDV++ LV+RV +AE
Sbjct:   121 ARNTN------PETRRYSG---SLGV---EDGAYTNEMLQSIEMVTDVLDSLVRRVTVAE 168

Query:   175 SETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETS 234
             SE+AV+KE+  LG+EEI +K  QIEN+S+KLEEMERFA GTN +LNEMR+R+E+LVEET 
Sbjct:   169 SESAVQKERALLGEEEISRKTIQIENLSVKLEEMERFAYGTNSVLNEMRERIEELVEETM 228

Query:   235 RQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQ 294
             RQR++A ENE+ELCRVKR+FESLK+YVS+  +VRETLLSSE+QF+TIE LFERLV KTTQ
Sbjct:   229 RQREKAVENEEELCRVKREFESLKSYVSTFTNVRETLLSSERQFKTIEELFERLVTKTTQ 288

Query:   295 LEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
             LEGEK QKE EVQKLMEENV+LTALLDKKEAQLLA+NEQCKVMAL+ASNI
Sbjct:   289 LEGEKAQKEVEVQKLMEENVKLTALLDKKEAQLLALNEQCKVMALSASNI 338

GO:0005886 "plasma membrane" evidence=ISM

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 143 (55.4 bits), Expect = 9.5e-07, P = 9.5e-07
 Identities = 65/199 (32%), Positives = 98/199 (49%)

Query:   151 ELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMER 210
             EL KS   V   +E LV ++  +ES  A E   VT+  +E+  KA ++  +   LE  ER
Sbjct:   277 ELEKSKDRVAS-LEELVSKLQSSESSVAAEGNGVTVEADEL--KA-EVSELRAALEASER 332

Query:   211 FALGTNGILNEMRQR-VEDLVEET-SRQRQRAAENEQELCRVKRDFESLK----NYVSSL 264
                    I + ++ R   +LVE T S   QR AE E +L   K + + LK    N  + L
Sbjct:   333 -KYQEEYIQSTLQIRSAYELVERTKSESTQREAEWEAKLNETKSEVQELKEKLMNKEAEL 391

Query:   265 --ISVRETLLSSE-KQFQTIERLFERLVAKTTQ-------LEGEKMQKEAEVQKLMEENV 314
               IS     LS   +Q Q+ ++ FE L A+  Q       L G  + KE E+Q LMEEN 
Sbjct:   392 QNISDENKGLSLHVEQMQSADKEFE-LSAQLKQSESISGDLRGNLLDKENELQSLMEENE 450

Query:   315 RLTALLDKKEAQLLAMNEQ 333
              L + + K+E++   M+++
Sbjct:   451 LLKSEIGKRESESTKMSDE 469

GO:0051219 "phosphoprotein binding" evidence=IPI

CGD|CAL0002211 orf19.3100 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 67/338 (19%), Positives = 149/338 (44%)

Query:    24 KQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKS----- 78
             ++++ R + +++ LQ  + E KT ++        +LE  W+ +      L+ L+      
Sbjct:   578 EKDLARFKAELENLQNSVSE-KTELRADNVHLSNQLEASWKEIADLENQLSELRITQNQL 636

Query:    79 KARIMAVPDLAHTSCGIRQLEG--VGLVDKNGTPLSGWSRNVDLSSFNGP---DEDTW-- 131
             K+      D    S  IR+L+     L  +N    +    N+ L         D + +  
Sbjct:   637 KSEKRTEVDYEIESL-IRKLKNDLTDLERENARLKTLEIENIKLKQQADKFLDDRELYSD 695

Query:   132 -IGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEE 190
              I +S++L  ++    A   ++ K    + D+ E+ V+ +      +  + E   L ++E
Sbjct:   696 NIELSERLKKAESARAAAEKKVSKMELDIADLQEI-VEELYTRNKFSLHDNESTEL-KKE 753

Query:   191 IRKKANQIENMSLKLEEMER---FALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQEL 247
             ++   N+I+     ++E+ER    +   N I  ++++ + D  +       +  + E+E+
Sbjct:   754 VQDLKNKIKASDDYIDELERNLRHSQADNNISEKLQKELTDAYDLVQTYESKMKQLEKEV 813

Query:   248 CRVKRDFES--LKNYVSSLISV-RETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEA 304
              ++K+  ES  ++ YV   + + R+ L  +  Q ++ E  +++ +   T+L+ EK   + 
Sbjct:   814 EKIKQSPESSTIEQYVEFQLKLTRDELEKANAQLKSTEEKYKKEI---TELQTEKQNMDI 870

Query:   305 EVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNAS 342
             E+ K    N  L   L+    +L  M   CK +A+ A+
Sbjct:   871 ELLKAKSNNKDLNRQLEASNQELSTMTRNCKRLAIKAT 908

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A0Z6 CaO19.3100 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 138 (53.6 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 67/338 (19%), Positives = 149/338 (44%)

Query:    24 KQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLKS----- 78
             ++++ R + +++ LQ  + E KT ++        +LE  W+ +      L+ L+      
Sbjct:   578 EKDLARFKAELENLQNSVSE-KTELRADNVHLSNQLEASWKEIADLENQLSELRITQNQL 636

Query:    79 KARIMAVPDLAHTSCGIRQLEG--VGLVDKNGTPLSGWSRNVDLSSFNGP---DEDTW-- 131
             K+      D    S  IR+L+     L  +N    +    N+ L         D + +  
Sbjct:   637 KSEKRTEVDYEIESL-IRKLKNDLTDLERENARLKTLEIENIKLKQQADKFLDDRELYSD 695

Query:   132 -IGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEE 190
              I +S++L  ++    A   ++ K    + D+ E+ V+ +      +  + E   L ++E
Sbjct:   696 NIELSERLKKAESARAAAEKKVSKMELDIADLQEI-VEELYTRNKFSLHDNESTEL-KKE 753

Query:   191 IRKKANQIENMSLKLEEMER---FALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQEL 247
             ++   N+I+     ++E+ER    +   N I  ++++ + D  +       +  + E+E+
Sbjct:   754 VQDLKNKIKASDDYIDELERNLRHSQADNNISEKLQKELTDAYDLVQTYESKMKQLEKEV 813

Query:   248 CRVKRDFES--LKNYVSSLISV-RETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEA 304
              ++K+  ES  ++ YV   + + R+ L  +  Q ++ E  +++ +   T+L+ EK   + 
Sbjct:   814 EKIKQSPESSTIEQYVEFQLKLTRDELEKANAQLKSTEEKYKKEI---TELQTEKQNMDI 870

Query:   305 EVQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNAS 342
             E+ K    N  L   L+    +L  M   CK +A+ A+
Sbjct:   871 ELLKAKSNNKDLNRQLEASNQELSTMTRNCKRLAIKAT 908

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000038802 pcpA [Emericella nidulans (taxid:162425)]

 Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 44/189 (23%), Positives = 90/189 (47%)

Query:   157 QMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRK----KANQIENMSLKLEEMERFA 212
             Q   D  E + ++      +  +E ++V   QE++R+    ++ +I+ +   +E++E   
Sbjct:   271 QQFQDFKEKMRRKHTDETIQREMEDQRVKELQEQLREARDSRSEEIDKLRDDIEDLEASL 330

Query:   213 LGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYV----SSLI--- 265
                +  + E  + +E+L +  S+++   +E E EL R K   E L++ +    S  I   
Sbjct:   331 REKDRTIEEREEEIEELKDRDSQEKDSLSELETELRRAKEQLEELQDSLDQAKSDAIEAR 390

Query:   266 -SVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKE 324
              S R+ L   E+  Q ++ L + +  K+   +G   Q E EV++L + N  L   L+ K 
Sbjct:   391 TSERQALEEKERAEQNLQELHDEMSNKSISTKGLTRQLEEEVKELRQRNSTLKEELESKT 450

Query:   325 AQLLAMNEQ 333
              Q+  + E+
Sbjct:   451 QQMNDLEER 459

GO:0005634 "nucleus" evidence=IDA

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0051417 "microtubule nucleation by spindle pole body" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 42/156 (26%), Positives = 78/156 (50%)

Query:   188 QEEIRKKANQIENMSLKLEEMERFALGTNGILNEMR-QRVEDLVEETSRQRQRAAENEQE 246
             ++E ++   Q +++S +L E E        ++ ++  QR+     E    R+  A+ E E
Sbjct:  2419 EDEAKRFKKQADDISARLHETELSTKERMTVVEKLEIQRLSS-TREADDLRKAIADLENE 2477

Query:   247 LCRVKRDFESLKNYVSSLISVRETLLSSEKQF--QTIERLFERLVAKTTQLEGEKMQKEA 304
               ++K+D E L+     +++ ++  +  EK    QT     E L+ K  Q+E EK + E+
Sbjct:  2478 KAKLKKDAEDLQKKSKEMVNAQQEQIKQEKTILQQTFMSEKEMLLKKEKQIEDEKKRLES 2537

Query:   305 EVQKLMEENVRLT-ALLDKKEAQLLAM-NEQCKVMA 338
             +     EE VR + AL D++E Q   M +E+ K+ A
Sbjct:  2538 Q----FEEEVRKSKALKDEQERQRKQMEDEKIKLKA 2569

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|F1SCX7 KIF20B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 74/337 (21%), Positives = 148/337 (43%)

Query:     5 EDVDLSSLKSQIIETH-EIWKQEMERSQFQVDVLQ-----EKLMEVKTCIKDSEEDAKKE 58
             E  + + L  QI+    E+   E +   F ++V Q     E  +      +   E+ ++ 
Sbjct:   906 EKEEKAELNKQIVSLQQELSSSEKKSLNFSIEVQQIQSNYENAISELKLQRGINEEQEER 965

Query:    59 LEVLWRRVKTTATLLTYLKSKARIM-AVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRN 117
             +  L + ++TT   +T   S+ ++M A  D   T   + Q+  + L++  G        N
Sbjct:   966 IMKLSKEIETTRRNITNNVSQIKLMQAKIDELRTLDSVSQISNIDLLNLRGFSSGSQEDN 1025

Query:   118 VDLSSFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRVIMAESET 177
             +  +  +  D D ++ ISKQ+     Q+ +       +V+ + +  + +VK       + 
Sbjct:  1026 LPNTQLHLLDND-YL-ISKQVKEHGIQELSRESSFRCTVEAIWEECKEIVKTSSKKSHQI 1083

Query:   178 AVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNE----MRQRVEDLVEET 233
                KE++   Q E++   +  EN  LK EE E       G+L E    ++Q  E+L E+T
Sbjct:  1084 EELKEQIEKLQAEVKHYKD--ENNRLKTEEREN--KNQEGLLKEKESLIQQLKEELQEKT 1139

Query:   234 SR---QRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVA 290
                  Q Q   E ++ L  + +D  S K  +  L ++ ET    EK  ++ +   E L  
Sbjct:  1140 VNLDVQVQHVVEGKRVLSELTQDVTSYKVKIQELEALLET--QKEKCSRSAQLEQEILEK 1197

Query:   291 KTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL 327
             ++  L+ E+  KE +    ++++++    L ++E +L
Sbjct:  1198 ESIILKQERNLKEFQAN--LQDSIKNAKDLSEREVRL 1232

GO:0050699 "WW domain binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

MGI|MGI:1930136 Pmfbp1 "polyamine modulated factor 1 binding protein 1" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 49/190 (25%), Positives = 90/190 (47%)

Query:   151 ELLKS-VQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEME 209
             E L++ +Q + D +E   +++ +++      KE+  L    +     +IEN  L+ ++ E
Sbjct:   472 EALRAEIQKLKDSLEEAREQLKVSDQNLTQSKEEAHLSASSLEDAHRKIENCLLQDKQKE 531

Query:   210 RFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE 269
                      L+++++    + EE    RQR  E   EL   +R   + +   S L   ++
Sbjct:   532 EVIKDLQSQLHKLQKESSKIEEERKHNRQRLQELSSELSEGQRRLSNAEKEKSLL---QK 588

Query:   270 TLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEA--EVQKLMEENVRLTALLDKKEAQL 327
             TL   EK+   I+ LF      +TQ+  +K Q+E    ++KL EE + +  LL++K  QL
Sbjct:   589 TLDEDEKK---IDELFH-----STQVSEQK-QRELTNSIRKLEEELLEIKGLLEEKREQL 639

Query:   328 LAMNEQCKVM 337
                 EQ K +
Sbjct:   640 KKSKEQEKAL 649

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.4e-05
 Identities = 69/360 (19%), Positives = 164/360 (45%)

Query:     1 MAAEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVK----TCIKDSEEDAK 56
             +A+ +  +  +L+S+I E  ++ + E E+ Q Q+     +L+E        ++   ED++
Sbjct:   452 LASNQSTESQALQSKITELSQL-QSEFEKLQNQLQSKDSELLETSKKQSALLEQQSEDSQ 510

Query:    57 KELEVLWRRVKTTATLLTYLKSKARIM--AVPDLAHTS----CGIRQLEGVGL-VDKNGT 109
              + E L          L  L+SK + +      L   S       ++L+ V L + +   
Sbjct:   511 SKDEKLKSVELNLQQTLQQLQSKDQELQNVKSQLEQQSEDSESKDQKLKSVELTLQQTLQ 570

Query:   110 PLSGWSRNVDLSSFNGPDEDTWI-----GISKQLGSSDEQDGAYIGELLKSVQM-VTDVM 163
              L      ++  S +   +D  +      + +QL S D +  +   E LK ++  ++ V 
Sbjct:   571 QLQDVKSQLEQQSEHNESKDEKLKSIELNLQQQLQSKDSELSSK-DEQLKCLESELSSVK 629

Query:   164 EVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMR 223
             E L  +    +SE +  K+++     E++ K  Q+ N   +++ +E         L+   
Sbjct:   630 EQLSSQSSNTDSELSSVKDQLLSKDSELKSKDEQLSNKDSQIKSIESDLQSVKDQLSSKD 689

Query:   224 QRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSS----LISVRETLLSSEKQFQ 279
             Q ++   ++ S + ++ +  + ++  ++ D +S+K+ +SS    L S ++ L S +++ Q
Sbjct:   690 QELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDQELQ 749

Query:   280 TIERLFERLVAKTTQLEGEKMQ---KEAEVQKLMEENVRLTALLDK---KEAQLLAMNEQ 333
             + +   ++L  K  +L+  K Q   + +   +L  ++  L +  D+   K+++L ++ +Q
Sbjct:   750 STK---DQLSTKDQELQSAKDQLSCQSSTTDQLSAKDTELQSTKDQLSSKDSELQSIKDQ 806

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SS65 LOC100737032 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 78/352 (22%), Positives = 145/352 (41%)

Query:     3 AEEDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVL 62
             AEE  D   +K++I    +I K+  ER++ + ++  E L   K  ++D   + KK+++ L
Sbjct:   569 AEERCD-QLIKTKIQLEAKI-KEVTERAEDEEEINAE-LTAKKRKLEDECSELKKDIDDL 625

Query:    63 WRRVKTTATLLTYLKSK-ARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLS 121
                     TL    K K A    V +L     G+   E +  + K    L   +    L 
Sbjct:   626 ------ELTLAKVEKEKHATENKVKNLTEEMAGLD--ETIAKLTKEKKALQE-AHQQTLD 676

Query:   122 SFNGPDEDTWIGISKQLGSSDEQDGAYIGELLKSVQMVTDVMEVLVKRV----IMAESET 177
                  +ED    ++K     ++Q     G L +  ++  D+     K      +  ES  
Sbjct:   677 DLQA-EEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIM 735

Query:   178 AVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQR 237
              +E EK  L  E+++KK  +I N+  K+E+ +  A+     + E++ R+E+L EE   +R
Sbjct:   736 DIENEKQQL-DEKLKKKEFEISNLQSKIEDEQALAIQLQKKIKELQARIEELEEEIEAER 794

Query:   238 QRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEK----QFQTIERLFERLVAKTT 293
                A+ E++   + R+ E +   +          +   K    +FQ + R  E    +  
Sbjct:   795 ASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHE 854

Query:   294 QLEGEKMQKEAE-VQKLMEENVRLTALLDKKEAQLLAMNEQCKVMALNASNI 344
                    +K A+ V +L E+   L  +  K E +   M  +   +A N   +
Sbjct:   855 ATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETV 906

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 45/97 (46%)

Query: 219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQF 278
           L E++Q + +L EE +  +++ AE +QE   +K++  +L+  +  L      +       
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127

Query: 279 QTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVR 315
             ++     L  +  +L+ E    EAE ++L E   R
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 10/158 (6%)

Query: 182 EKVTLGQEEIRKKANQIENMSLKLEE--MERFALGTNGI-----LNEMRQRVEDLVEETS 234
           E++   + EI K   +IE +  ++EE    R  L          L ++R  +E++ +E +
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381

Query: 235 RQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQ 294
             R    +  ++L ++KR+   LK  +  L    E L    ++   +      + AK  +
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQ---EELQRLSEELADLNAAIAGIEAKINE 438

Query: 295 LEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNE 332
           LE EK  K  E++K   +  +L A L K E +L  + E
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 3/174 (1%)

Query: 160 TDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGIL 219
              +E L + +   + E    +E++     E+++   ++E + L++ E+E         L
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 220 NEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQ 279
             +   +  L ++    R+R A  E++L  ++   E L+   S L  + E L   E++ +
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLE 347

Query: 280 TIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMNEQ 333
            ++   E L A+  +LE E  + E+ +++L E+   L + + + E Q+ ++N +
Sbjct: 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 10/168 (5%)

Query: 164 EVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMR 223
            +LV R+     E    +E++   +EE+ +   +++ +  KLEE           ++E+ 
Sbjct: 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-------LRLEVSELE 280

Query: 224 QRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIER 283
           + +E+L +E        +  EQ+   ++   E L N    L  +   L   E +   +  
Sbjct: 281 EEIEELQKELYALANEISRLEQQKQILR---ERLANLERQLEELEAQLEELESKLDELAE 337

Query: 284 LFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLAMN 331
               L  K  +L+ E    EAE+++L  E   L + L++ E QL  + 
Sbjct: 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.43
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.86
cd07597	246	BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S	93.6
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.47
PRK02224	880	chromosome segregation protein; Provisional	91.88
PRK11637	428	AmiB activator; Provisional	91.44
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	89.18
PRK02224	880	chromosome segregation protein; Provisional	86.98
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.81
COG1614	470	CdhC CO dehydrogenase/acetyl-CoA synthase beta sub	84.94
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	82.26
PRK11637	428	AmiB activator; Provisional	81.91
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	81.09

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.43  E-value=3.5  Score=37.15  Aligned_cols=139  Identities=24%  Similarity=0.318  Sum_probs=93.9

Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHH
Q 019208          189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVR  268 (344)
Q Consensus       189 Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vr  268 (344)
                      +-|+.-.-||+.|..+.+..++       .+.+..+.-..|++.-...++.-.+-...|+...+|+.+|++.-+.+....
T Consensus        27 ~lIksLKeei~emkk~e~~~~k-------~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e   99 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEK-------LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE   99 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555667777777666665       457788888888888888888888888888888888888888777777777


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhh------HHHHHHHHHhh--hhhhhhcchhHHHHHHHHhhh
Q 019208          269 ETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK------EAEVQKLMEEN--VRLTALLDKKEAQLLAMNEQC  334 (344)
Q Consensus       269 eTllssekqfqtiE~lferLvakt~qLE~eK~qK------EaEVQKlMeEN--vrL~allDkKEAqL~AmnEQc  334 (344)
                      +.|-..+.+.+.++.-|+.+..--..|..--...      .+....+..|+  --|+..|++++|||..+-..|
T Consensus       100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~  173 (201)
T PF13851_consen  100 KELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA  173 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7776666666666666666655555554433222      23333333333  246777899999998765433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.86  E-value=2.5  Score=36.02  Aligned_cols=73  Identities=29%  Similarity=0.414  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcc
Q 019208          220 NEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQL  295 (344)
Q Consensus       220 neMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt~qL  295 (344)
                      .+-.+++..+-.|....+++-.+++.++...+.+|..+.   .-+-.+.+-+.+.+..|..+.+-|.+|.....++
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~  156 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR---ELLKSVEERLDSLDESIKELEKEIRELQKELQDS  156 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666667777778888999999999999999888   4445556666666666777776666666333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

Probab=93.60  E-value=5.2  Score=36.61  Aligned_cols=146  Identities=23%  Similarity=0.290  Sum_probs=80.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHH
Q 019208          146 GAYIGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQR  225 (344)
Q Consensus       146 ~~Yv~e~LksV~mVtdvMEsLvKRvi~AESEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqr  225 (344)
                      ..||..++.++..+.+.+|.++||---.    |.+-.  .     +-+-..-+-+.+..+.-..    |-|+-.+.++.-
T Consensus        28 r~~I~~l~~~~~~l~~l~er~~kR~~~~----A~d~~--~-----f~~~l~~l~~~~~~~~~~~----~~~~~~~~l~~~   92 (246)
T cd07597          28 RERIRRLLESWTKLRVLAERYEKRSQQQ----AADRA--E-----FARLLNSLGELTARLYPWA----GDSDTWGDINEG   92 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--H-----HHHHHHhhccCCCCCCCcc----CCCccHHHHHHH
Confidence            4699999999999999999999986321    11111  1     1111111111111111111    334444556655


Q ss_pred             HHHHHHHHHHHH-HHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHH-HHHHHHHHHHHHhhhhcchhhhhh--
Q 019208          226 VEDLVEETSRQR-QRAAENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQ-FQTIERLFERLVAKTTQLEGEKMQ--  301 (344)
Q Consensus       226 vedlv~Etsrqr-qraaenE~elsrvk~dfesLksyvssli~vreTllssekq-fqtiE~lferLvakt~qLE~eK~q--  301 (344)
                      +..+-.....-- .-..+...+...   =.|.||.|++-|+++|++.---+|. +-.|.+|..|.-..-..|++-+.+  
T Consensus        93 l~~~s~~~~~~s~~~~~~a~~~~~~---vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~  169 (246)
T cd07597          93 LSSLSKHFQLLSDLSEDEARAEEDG---VLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPD  169 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCC
Confidence            555543322111 111111222222   2588999999999999998866633 445666666666666666665544  


Q ss_pred             -hHHHHHHH
Q 019208          302 -KEAEVQKL  309 (344)
Q Consensus       302 -KEaEVQKl  309 (344)
                       |.+||.||
T Consensus       170 ~~~~e~ekl  178 (246)
T cd07597         170 VKGAEVDKL  178 (246)
T ss_pred             CchhHHHHH
Confidence             56677663

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.47  E-value=11  Score=39.16  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=12.1

Q ss_pred             HhHHHHHHHHhhh--hcccccC
Q 019208           67 KTTATLLTYLKSK--ARIMAVP   86 (344)
Q Consensus        67 KT~atLLtYLKSK--ARiMAvP   86 (344)
                      .|+..++.|||++  .|+-.+|
T Consensus       558 ~~a~~~i~~l~~~~~gr~tflp  579 (1164)
T TIGR02169       558 AVAKEAIELLKRRKAGRATFLP  579 (1164)
T ss_pred             HHHHHHHHHHHhcCCCCeeecc
Confidence            4566778888854  2444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=91.88  E-value=12  Score=38.91  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             HhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 019208          192 RKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETL  271 (344)
Q Consensus       192 ~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~vreTl  271 (344)
                      +....|++.+...|++.+.-  -.+.-|+.+++.+.++-.+-++.+++...-+.++..+...+..++.-...+-...+.+
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~--~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~  260 (880)
T PRK02224        183 SDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI  260 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666666666664322  1356788889999998888888888888888888888888888887777777777888


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhh
Q 019208          272 LSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENV  314 (344)
Q Consensus       272 lssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENv  314 (344)
                      -..+.+.+..+.-.+.+-.+..+++..+.+-+.++.+|..+.-
T Consensus       261 ~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~  303 (880)
T PRK02224        261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG  303 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888888887777888887777777777766666666543

>PRK11637 AmiB activator; Provisional

Probab=91.44  E-value=14  Score=35.74  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcchhHHHH
Q 019208          278 FQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQL  327 (344)
Q Consensus       278 fqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allDkKEAqL  327 (344)
                      -..++.+...+..+...|+..+.++...+.+|=.+--...+.|++.+++.
T Consensus       193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~  242 (428)
T PRK11637        193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANE  242 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666777666666666665443333444444444333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=89.18  E-value=30  Score=35.77  Aligned_cols=15  Identities=13%  Similarity=0.324  Sum_probs=5.9

Q ss_pred             HHHHHHHHhhHHHHH
Q 019208          244 EQELCRVKRDFESLK  258 (344)
Q Consensus       244 E~elsrvk~dfesLk  258 (344)
                      ..++...+.++..++
T Consensus       802 ~~~l~~~~~~~~~~~  816 (1179)
T TIGR02168       802 REALDELRAELTLLN  816 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=86.98  E-value=42  Score=34.96  Aligned_cols=53  Identities=19%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             HHHhhhhhHHHHHHHHHhhhhhhhcCh----------HHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019208           26 EMERSQFQVDVLQEKLMEVKTCIKDSE----------EDAKKELEVLWRRVKTTATLLTYLKS   78 (344)
Q Consensus        26 eme~~qSQVdvLq~rl~evKa~i~gSe----------eda~KELevL~rRVKT~atLLtYLKS   78 (344)
                      .++..+.++..|...+.++++.+...+          ++++.+++.|..+.....+.+.|++.
T Consensus       378 ~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~  440 (880)
T PRK02224        378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE  440 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445566666666666666554221          45566777888888888888877664

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.81  E-value=28  Score=36.62  Aligned_cols=121  Identities=18%  Similarity=0.300  Sum_probs=82.8

Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHhHHHH--
Q 019208          189 EEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLIS--  266 (344)
Q Consensus       189 Eei~rK~~Qie~ms~klEemErfa~gTn~iLneMrqrvedlv~EtsrqrqraaenE~elsrvk~dfesLksyvssli~--  266 (344)
                      .+.......++.+...|++.+.=..+..+-+..+...+..+.+|+.+.+....+.|+++..-++=++-|-.--..+-.  
T Consensus       321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~  400 (594)
T PF05667_consen  321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ  400 (594)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            334556677888888888888888888889999999999999999999999999999998777766555432111111  


Q ss_pred             -----HHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHh
Q 019208          267 -----VRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEE  312 (344)
Q Consensus       267 -----vreTllssekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeE  312 (344)
                           ..+-+.....|++....   -|..+...|+.....++.|-++.+.+
T Consensus       401 ~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~  448 (594)
T PF05667_consen  401 ALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQE  448 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHH
Confidence                 22334444556665554   56666666666555555555544444

>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]

Probab=84.94  E-value=0.42  Score=48.39  Aligned_cols=29  Identities=45%  Similarity=0.959  Sum_probs=23.6

Q ss_pred             cCCccccccc--------cccccccccccC-------CCCCCCC
Q 019208           85 VPDLAHTSCG--------IRQLEGVGLVDK-------NGTPLSG  113 (344)
Q Consensus        85 vP~LAhtScG--------IkqlegVG~VDk-------~G~pls~  113 (344)
                      .=.++|||||        |-.+||+|.|++       +|+|.|.
T Consensus       271 ~~~~PhTSCGCFeav~FYiPEvDG~G~v~R~y~getP~GipFSt  314 (470)
T COG1614         271 FFEYPHTSCGCFEAVVFYIPEVDGIGIVHREYRGETPNGIPFST  314 (470)
T ss_pred             cccCCCCccceeeEEEEeccccccceeeecCcCCCCCCCCcchh
Confidence            4468999999        788999999997       4777664

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=82.26  E-value=72  Score=33.79  Aligned_cols=33  Identities=39%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019208          219 LNEMRQRVEDLVEETSRQRQRAAENEQELCRVK  251 (344)
Q Consensus       219 LneMrqrvedlv~EtsrqrqraaenE~elsrvk  251 (344)
                      +.++++|+..|.++-.--.++..|+|.++.+.+
T Consensus       215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk  247 (546)
T PF07888_consen  215 LAEARQRIRELEEDIKTLTQKEKEQEKELDKLK  247 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777776666666666666666555543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=81.91  E-value=53  Score=31.97  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=10.4

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019208          295 LEGEKMQKEAEVQKLMEENVRLTALLD  321 (344)
Q Consensus       295 LE~eK~qKEaEVQKlMeENvrL~allD  321 (344)
                      |+.++...++++.+|=.+--+|.++|+
T Consensus       224 L~~~~~~~~~~l~~l~~~~~~L~~~I~  250 (428)
T PRK11637        224 LESSLQKDQQQLSELRANESRLRDSIA  250 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=81.09  E-value=44  Score=30.49  Aligned_cols=86  Identities=26%  Similarity=0.293  Sum_probs=53.3

Q ss_pred             HHHHHHHHhhHHHHHHHHhHH-HHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhh-----hhhh--HHHHHHHHHhhhh
Q 019208          244 EQELCRVKRDFESLKNYVSSL-ISVRETLLSSEKQFQTIERLFERLVAKTTQLEGE-----KMQK--EAEVQKLMEENVR  315 (344)
Q Consensus       244 E~elsrvk~dfesLksyvssl-i~vreTllssekqfqtiE~lferLvakt~qLE~e-----K~qK--EaEVQKlMeENvr  315 (344)
                      +.=|+||+..|........+| -.+++.|---+-+.+.+..+..+.+++|.+-++=     +.-.  +..++.|-+.+-.
T Consensus       159 ~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~  238 (264)
T PF06008_consen  159 EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNE  238 (264)
T ss_pred             HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345889999998888888887 4477777777777788888888877777664431     1111  2223344444555


Q ss_pred             hhhhcchhHHHHHH
Q 019208          316 LTALLDKKEAQLLA  329 (344)
Q Consensus       316 L~allDkKEAqL~A  329 (344)
                      +...|+.-+.-|..
T Consensus       239 ~~~~L~~a~~~L~~  252 (264)
T PF06008_consen  239 VSETLKEAEDLLDQ  252 (264)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555444444433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 29/186 (15%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 154  KSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFAL 213
            K  ++   + E+  +     E    ++ EK  + Q+++     Q+E      ++++   +
Sbjct: 921  KKQELEEILHEMEARIEEEEERSQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKV 979

Query: 214  GTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRETLLS 273
              +G + +M   +  + ++ ++  +     E+ +  +  +    +    +L  ++    S
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 274  S----EKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLLA 329
                 E + +  E+  + L     +LEGE      ++ +L  +   L A L KKE +L A
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

Query: 330  MNEQCK 335
               + +
Sbjct: 1100 ALARLE 1105

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 3/187 (1%)

Query: 149  IGELLKSVQMVTDVMEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEM 208
            I  +      +T   ++L +RV    +  A E+EK     +   K  + I  + ++L++ 
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 209  ERFALGTNGILNEMRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVR 268
            E+       I  ++     DL E+ +  + + AE + +L + + + ++    +    S +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111

Query: 269  ETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKEAQLL 328
               L   K+ + +E     L       +  + + E + + L EE   L   L+       
Sbjct: 1112 NNAL---KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168

Query: 329  AMNEQCK 335
               E   
Sbjct: 1169 TQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 26/191 (13%), Positives = 67/191 (35%), Gaps = 18/191 (9%)

Query: 163  MEVLVKRVIMAESETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEM 222
            +E         + E      K+   +++I    +Q   ++ + + +E         L E 
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 223  RQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLI----------------- 265
             ++ ++L +  ++     +E E  L + ++  + L+     L                  
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 266  -SVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLDKKE 324
              ++  L   E++ Q      E   ++      +  + E+ +  L E+     A  +K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 325  AQLLAMNEQCK 335
             Q   ++E+ +
Sbjct: 1144 KQKRDLSEELE 1154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 45/310 (14%), Positives = 91/310 (29%), Gaps = 108/310 (34%)

Query: 6   DVDLSSLKSQIIETH--------EIWKQEMERSQFQVDVLQEKLMEV-KTCIKDSE---- 52
           D     L  +++ T+        E  +  +        V  +KL  + ++ +   E    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 53  -----------EDAK---KELEVLWRRVKTT-----------ATLLT------------- 74
                        A      L ++W  V  +            +L+              
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 75  YLKSKARIMAVPDLAHTSCGIRQLEGVGLVDKNGTPLSGWSRNVDLSSFNGPDEDTWIGI 134
           YL+ K ++     L H S          +VD    P     +  D      P  D +   
Sbjct: 432 YLELKVKLENEYAL-HRS----------IVDHYNIP-----KTFDSDDLIPPYLDQYFY- 474

Query: 135 SKQLGSSDEQDGAYIGELLKSVQMV--TDVMEVL------VKRVIMAESETAVEKEKV-- 184
                       ++IG  LK+++      +  ++      +++ I  +S        +  
Sbjct: 475 ------------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 185 TLGQEE-----IRKKANQIENMSLKLEEMERF--ALGTNGILNE--------MRQRVEDL 229
           TL Q +     I     + E +   +  +  F   +  N I ++        +    E +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERL---VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 230 VEETSRQRQR 239
            EE  +Q QR
Sbjct: 580 FEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 44/335 (13%), Positives = 101/335 (30%), Gaps = 96/335 (28%)

Query: 5   EDVDLSSLKSQIIETHEIWKQEMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWR 64
           +  +  +L  +I+ T         R +   D L        +    S      E++ L  
Sbjct: 257 KAWNAFNLSCKILLT--------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-- 306

Query: 65  RVKTTATLLTYLKSKARIMAVPDLAHTSCGI--RQLEGVGLVDKNGTPLSGWSRNVDLSS 122
                  LL YL          DL         R+L  +    ++G       ++V+   
Sbjct: 307 -------LLKYLD-----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 123 FNGPDEDTWIGIS-KQLGSSDEQDGAYIGELL----KSVQMVTDVMEVLVKRVIMAESET 177
                  T I  S   L  ++ +   +  + L     S  + T ++ ++       +   
Sbjct: 355 LT-----TIIESSLNVLEPAEYRK-MF--DRLSVFPPSAHIPTILLSLI-----WFDVIK 401

Query: 178 AVEKEKVTLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNEMRQRVED-------LV 230
                       ++    N++   SL  ++ +   +    I  E++ ++E+       +V
Sbjct: 402 -----------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 231 EETSRQRQ-----------------------RAAENEQELCRVKR---DFESLK------ 258
           +  +  +                        +  E+ + +   +    DF  L+      
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 259 ----NYVSSLISVRETLLSSEKQFQTIERLFERLV 289
               N   S+++  + L   +      +  +ERLV
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 53/381 (13%), Positives = 111/381 (29%), Gaps = 105/381 (27%)

Query: 20  HEIWKQEMERSQFQ------VDVLQEKLMEVKTC--IKDSEEDA--KKELEVLWR---RV 66
           H     + E  + Q      + V ++  ++   C  ++D  +    K+E++ +      V
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 67  KTTATLLTYLKSK-ARIMAV-------PD---LA---HTSCGIRQLEGVGLVDKNGTPLS 112
             T  L   L SK   ++          +   L     T      +     +++    L 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRL- 119

Query: 113 GWSRNVDLSSFNGPDEDTWIGISKQLGSSDEQDGAYI--------GELLKSVQMVTDVME 164
            ++ N   + +N      ++ + + L   + +    +        G   K+         
Sbjct: 120 -YNDNQVFAKYNVSRLQPYLKLRQAL--LELRPAKNVLIDGVLGSG---KTW-------- 165

Query: 165 VLVKRVIMAESETAVEKEKV---TLGQEEIRKKANQIENMSLKLEEMERFALGTNGILNE 221
            +   V ++         K+    L           +      LE +++        L +
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETV------LEMLQKL-------LYQ 208

Query: 222 MRQRVEDLVEETSRQRQRAAENEQELCRVKRDFESLKNYVSSLISVRE------------ 269
           +        + +S  + R    + EL    R     K Y + L+ +              
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 270 ---TLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK---EAEVQKLMEENVRLTALLDKK 323
               LL++ +  Q  + L     A TT +  +         EV+ L      L   LD +
Sbjct: 265 SCKILLTT-RFKQVTDFL---SAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCR 314

Query: 324 EAQLLAMNEQCKVMALNASNI 344
              L    E         S I
Sbjct: 315 PQDL--PREVLTTNPRRLSII 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.22
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	89.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.69
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	86.6
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	81.98
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	80.93

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.22  E-value=1.1  Score=47.36  Aligned_cols=116  Identities=12%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhhHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 019208          217 GILNEMRQRVEDLVEETSRQRQRA----AENEQELCRVKRDFESLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKT  292 (344)
Q Consensus       217 ~iLneMrqrvedlv~Etsrqrqra----aenE~elsrvk~dfesLksyvssli~vreTllssekqfqtiE~lferLvakt  292 (344)
                      .-|.||++|+++...+...-+++.    ..-++|.+.++.|.+.|+.--....+....+.+.+.+....++-++++....
T Consensus       928 ~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A          928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788889988877766544443    3456788888888888888777777777777777887777777777777666


Q ss_pred             hcchhhhhh----hHHHHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019208          293 TQLEGEKMQ----KEAEVQKLMEENVRLTALLDKKEAQLLAMNE  332 (344)
Q Consensus       293 ~qLE~eK~q----KEaEVQKlMeENvrL~allDkKEAqL~AmnE  332 (344)
                      ..||....|    -+..|..|=.||-+|..-+|.-+.+++-.++
T Consensus      1008 ~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554332    2355667888898888888887766665554

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=89.94  E-value=0.97  Score=37.46  Aligned_cols=61  Identities=25%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             hhhhHHHHH---HHHhhhhhHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHHHhHHHHHHHHh
Q 019208           17 IETHEIWKQ---EMERSQFQVDVLQEKLMEVKTCIKDSEEDAKKELEVLWRRVKTTATLLTYLK   77 (344)
Q Consensus        17 ~~~~~~Wk~---eme~~qSQVdvLq~rl~evKa~i~gSeeda~KELevL~rRVKT~atLLtYLK   77 (344)
                      .++|+-|++   +.++.+.|+..+.+-.-+.-.++..+-+|.++++.+|..++.+...+|.=|+
T Consensus         2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq   65 (112)
T 1x79_B            2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ   65 (112)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999998   6777778999999999999999999999999999999999999999996444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.04  E-value=11  Score=35.24  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=26.2

Q ss_pred             cccccccCCCCCCC-----CCCcCCCCCCCCCCCcchhhhhhhccCC--CcccchhhHHHHHHHHH
Q 019208           99 EGVGLVDKNGTPLS-----GWSRNVDLSSFNGPDEDTWIGISKQLGS--SDEQDGAYIGELLKSVQ  157 (344)
Q Consensus        99 egVG~VDk~G~pls-----~Wsk~~d~ss~~~~d~~~~~~~~~~~g~--~~~~d~~Yv~e~LksV~  157 (344)
                      +..-.+|=.|-|+.     .|.++....++++.+ ..|.+.....+.  ....+..|...+++-+.
T Consensus       345 ~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~cc~~~~~~~~~~~~~~l~  409 (597)
T 3oja_B          345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD-QHCKIDYQLEHGLCCKESDKPYLDRLLQYIA  409 (597)
T ss_dssp             CCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCC-CCCCTTCEEETTEEEECCSSHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCCCCChhHHHHHHHHhhhcccccc-ccCCcchhccCCccccCCCccchhHHHHHhh
Confidence            33444555555543     455555554443322 234332222222  12445566666655444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.69  E-value=1.8  Score=45.38  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=9.7

Q ss_pred             HHHHhhhhhhhhhhhhHHHHh
Q 019208          189 EEIRKKANQIENMSLKLEEME  209 (344)
Q Consensus       189 Eei~rK~~Qie~ms~klEemE  209 (344)
                      .++.....+++.+..+++..+
T Consensus       857 ~El~~L~~eL~el~~~L~~le  877 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAE  877 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=86.60  E-value=0.67  Score=33.92  Aligned_cols=41  Identities=34%  Similarity=0.389  Sum_probs=33.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhcchhhhhhhHHHHHHHHHhhhhhhhhcc
Q 019208          274 SEKQFQTIERLFERLVAKTTQLEGEKMQKEAEVQKLMEENVRLTALLD  321 (344)
Q Consensus       274 sekqfqtiE~lferLvakt~qLE~eK~qKEaEVQKlMeENvrL~allD  321 (344)
                      ||.|.-.+-.++++||+|+++||--=..+|       .||.||++||.
T Consensus         2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~e-------QEieRL~~LLk   42 (48)
T 3vmx_A            2 SERQILRLKQINIQLATKIQHLEFSCSEKE-------QEIERLNKLLK   42 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHccHHH-------HHHHHHHHHHH
Confidence            678888888899999999999987766666       46788888874

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=81.98  E-value=17  Score=28.57  Aligned_cols=18  Identities=11%  Similarity=0.161  Sum_probs=7.2

Q ss_pred             HHHhhhhhHHHHHHHHHh
Q 019208           26 EMERSQFQVDVLQEKLME   43 (344)
Q Consensus        26 eme~~qSQVdvLq~rl~e   43 (344)
                      .|...+.+++.++.++-+
T Consensus         7 ~~~~l~~~~~~~~~~~~~   24 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADE   24 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            333334444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=80.93  E-value=32  Score=40.99  Aligned_cols=154  Identities=16%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             hhhhhhhhhhhccHHHHHhhhhhhhhhhhhHHHHhhh----hhchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHh
Q 019208          175 SETAVEKEKVTLGQEEIRKKANQIENMSLKLEEMERF----ALGTNGILNEMRQRVEDLVEETSRQRQ-------RAAEN  243 (344)
Q Consensus       175 SEtaveKeKv~~~~Eei~rK~~Qie~ms~klEemErf----a~gTn~iLneMrqrvedlv~Etsrqrq-------raaen  243 (344)
                      .|....+.+..-|.+.+..-+.|++.|+.+|++++.-    .--|+-+|.+|-..    -.|...++.       .+++.
T Consensus      1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~----~~~ae~~k~~v~~~~~~~~~~ 1988 (3245)
T 3vkg_A         1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD----QQAAEIKQKDARELQVQLDVR 1988 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888999999999999999999999987653    23344444444322    112222222       22333


Q ss_pred             HHHHHHHHhhHH---------------------HHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcchhhhhhh
Q 019208          244 EQELCRVKRDFE---------------------SLKNYVSSLISVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQK  302 (344)
Q Consensus       244 E~elsrvk~dfe---------------------sLksyvssli~vreTllssekqfqtiE~lferLvakt~qLE~eK~qK  302 (344)
                      +.+....|.+.+                     .|...-..|..+++.|-..+.+.+.+.+=|+.++++...|+.+...-
T Consensus      1989 ~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A         1989 NKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp             HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444442                     12222333444445555555555555555555555555555443322


Q ss_pred             HH-------HHHHHHHhhhhhhhhcchhHHHHHHHHh
Q 019208          303 EA-------EVQKLMEENVRLTALLDKKEAQLLAMNE  332 (344)
Q Consensus       303 Ea-------EVQKlMeENvrL~allDkKEAqL~AmnE  332 (344)
                      +.       =+..|=.|++|-+.-++.-+.|+..+--
T Consensus      2069 ~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A         2069 KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence            22       1233445666666655555555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00