Citrus Sinensis ID: 019211

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVVD
cccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHccccccccEEEEEEccccccccccccEEEcccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEcccccEEEcccccccEEEEcccEEEEEEcccccccccEEEccccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccc
cccccHHHcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEEcccccccHHHEEEEEEcccHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEccHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHccccc
mgdvdpafiqppefrpkvqnnmeiddeipvidlstdpkQLVLEVGHACQkwgffqvinhgapSELKARIEKAAKEFFDqpieekqkvkrdevhpmgyhdqehtkNVRDWKEVFDFwlqdptflpaspepddkeLRRLtnqwpefplgFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTflrfnyyppcpypelalgvgphkdggaltvlaqddvgglqvrgksdgewipvkpipdayiinigdatqvwsndkyespehrvvvntekerfsipffffpahhamlkpfdeivneqnparyrefnwgkfvvarnrsdykkqnveNIQIRHFRVVD
mgdvdpafiqppefrpkvqnnmeIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEffdqpieekqkvkrdevhpmgyhdqehtknVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLqvrgksdgewipvkpiPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVvarnrsdykkqnveniqirhfrvvd
MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKlaykllelislslglsADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVVD
*************************DEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAP****************************************TKNVRDWKEVFDFWLQDPTFL************RLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHF****
MGDVDPAFIQPPEFRP*****MEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKV*RD***PMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVV*
MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVVD
**DVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVV*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRVVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q39110377 Gibberellin 20 oxidase 1 no no 0.875 0.798 0.362 2e-50
Q39224358 Protein SRG1 OS=Arabidops no no 0.872 0.837 0.354 1e-49
P24397344 Hyoscyamine 6-dioxygenase N/A no 0.906 0.906 0.349 2e-49
Q39111378 Gibberellin 20 oxidase 2 no no 0.857 0.780 0.344 8e-48
D4N501364 Probable 2-oxoglutarate/F N/A no 0.816 0.771 0.358 1e-46
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.808 0.770 0.345 5e-46
O04706365 Gibberellin 20 oxidase 1- N/A no 0.912 0.860 0.341 1e-45
O04705361 Gibberellin 20 oxidase 1- N/A no 0.912 0.869 0.341 3e-45
Q05965357 Naringenin,2-oxoglutarate N/A no 0.816 0.787 0.339 4e-45
Q43383398 1-aminocyclopropane-1-car no no 0.845 0.731 0.325 7e-45
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function desciption
 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 171/320 (53%), Gaps = 19/320 (5%)

Query: 8   FIQPPEFRPKVQNNMEIDDEIPVIDLS---TDPKQLVLE---VGHACQKWGFFQVINHGA 61
           FI P + +P + N +E+D  +P+IDL    +DP   +     +  AC+K GFF V+NHG 
Sbjct: 44  FIWPDDEKPSI-NVLELD--VPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGI 100

Query: 62  PSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRD--WKEVFDFWLQD 119
             EL +   +    FFD P+ EKQ+V R     +GY      +      WKE   F   D
Sbjct: 101 SEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCD 160

Query: 120 PTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGLSAD 179
              +  S    D     L + +  F   ++E CE     +  L+ K++EL+ LSLG+  D
Sbjct: 161 D--MSRSKSVQDYFCDALGHGFQPFGKVYQEYCE----AMSSLSLKIMELLGLSLGVKRD 214

Query: 180 RLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEW 239
             + +F+E  + +R NYYPPC  P+L LG GPH D  +LT+L QD V GLQV    + +W
Sbjct: 215 YFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVF--VENQW 272

Query: 240 IPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFD 299
             ++P P A+++NIGD     SND+Y+S  HR VVN+E ER S+ FF  P    ++ P  
Sbjct: 273 RSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPR 332

Query: 300 EIVNEQNPARYREFNWGKFV 319
           E+++     RY +F W  F+
Sbjct: 333 ELLDSITSRRYPDFTWSMFL 352
Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|P24397|HY6H_HYONI Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1 Back     alignment and function description
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q05965|FL3H_MATIN Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
224103505347 2-oxoglutarate-dependent dioxygenase [Po 0.991 0.982 0.713 1e-138
356577029359 PREDICTED: flavonol synthase/flavanone 3 0.994 0.952 0.675 1e-136
356521217343 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.994 0.997 0.663 1e-132
225428665347 PREDICTED: 1-aminocyclopropane-1-carboxy 0.988 0.979 0.656 1e-132
147865705347 hypothetical protein VITISV_000650 [Viti 0.988 0.979 0.653 1e-131
18402079352 2-oxoglutarate (2OG) and Fe(II)-dependen 0.994 0.971 0.664 1e-130
297834812352 oxidoreductase [Arabidopsis lyrata subsp 0.994 0.971 0.664 1e-128
224103503338 2-oxoglutarate-dependent dioxygenase [Po 0.968 0.985 0.646 1e-128
255556241346 Gibberellin 20 oxidase, putative [Ricinu 0.988 0.982 0.653 1e-126
224123248369 2-oxoglutarate-dependent dioxygenase [Po 0.994 0.926 0.602 1e-123
>gi|224103505|ref|XP_002313083.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222849491|gb|EEE87038.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/346 (71%), Positives = 294/346 (84%), Gaps = 5/346 (1%)

Query: 1   MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLS----TDPKQLVLEVGHACQKWGFFQV 56
           MG++DP FIQ  E+RPK +  +E D+EIPVIDLS    +D K++V ++G AC+KWGFFQV
Sbjct: 1   MGEIDPEFIQETEYRPKFKT-IEADEEIPVIDLSVSTPSDTKEVVSKIGEACKKWGFFQV 59

Query: 57  INHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFW 116
           INHG P EL+ +IEK AKEFFDQP+EEK+KVKRDEV+PMGYHD EHTKN+RDWKEVFDF 
Sbjct: 60  INHGVPLELRQKIEKVAKEFFDQPMEEKRKVKRDEVNPMGYHDSEHTKNIRDWKEVFDFL 119

Query: 117 LQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGL 176
           + DPT +PAS +PDDKELR +TNQWP  P  FRELC++Y R+VEKLA+KLLELISLSLGL
Sbjct: 120 VVDPTLIPASGDPDDKELRAMTNQWPHKPSEFRELCQEYTRQVEKLAFKLLELISLSLGL 179

Query: 177 SADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSD 236
            ADRL GYFK+Q +F RFN+YPPCP P LALGVG HKDGGALTVL+QDDVGGLQ+  +SD
Sbjct: 180 PADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLSQDDVGGLQIGRRSD 239

Query: 237 GEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLK 296
           GEWIPVKPIPDA+IINIG+  QVWSND Y S EHRVVVN+++ERFSIPFFFFP+ +  +K
Sbjct: 240 GEWIPVKPIPDAFIINIGNCMQVWSNDLYWSAEHRVVVNSQRERFSIPFFFFPSQYVDIK 299

Query: 297 PFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRV 342
           P DE++NEQN A+Y+EFNWGKF  +RNRSDYKK+ VENIQI HF+V
Sbjct: 300 PLDELINEQNLAKYKEFNWGKFFASRNRSDYKKREVENIQIDHFKV 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356577029|ref|XP_003556632.1| PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|356521217|ref|XP_003529253.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|225428665|ref|XP_002284892.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 5 [Vitis vinifera] gi|297741361|emb|CBI32492.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147865705|emb|CAN83263.1| hypothetical protein VITISV_000650 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18402079|ref|NP_566623.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|9280317|dbj|BAB01696.1| oxylase-like protein [Arabidopsis thaliana] gi|20466684|gb|AAM20659.1| unknown protein [Arabidopsis thaliana] gi|23198196|gb|AAN15625.1| unknown protein [Arabidopsis thaliana] gi|332642658|gb|AEE76179.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834812|ref|XP_002885288.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297331128|gb|EFH61547.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224103503|ref|XP_002313082.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222849490|gb|EEE87037.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556241|ref|XP_002519155.1| Gibberellin 20 oxidase, putative [Ricinus communis] gi|223541818|gb|EEF43366.1| Gibberellin 20 oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123248|ref|XP_002330269.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222871304|gb|EEF08435.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.991 0.968 0.635 4.4e-123
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.994 0.979 0.536 6.5e-106
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.805 0.760 0.381 9.5e-50
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.866 0.856 0.365 1.5e-49
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.866 0.853 0.384 3.2e-49
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.912 0.846 0.352 1.2e-47
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.936 0.887 0.345 5.4e-47
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.872 0.837 0.345 5.4e-47
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.904 0.881 0.35 1.3e-45
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.863 0.870 0.354 2.1e-45
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
 Identities = 223/351 (63%), Positives = 270/351 (76%)

Query:     1 MGDVDPAFIQPPEFRPKVQ--NNMEI--DDEIPVIDLST------DPKQLVLEVGHACQK 50
             MG++D AFIQ PE RP     N+ +    DEIP IDLS+      D   +  E+  AC++
Sbjct:     1 MGELDEAFIQAPEHRPNTHLTNSGDFIFSDEIPTIDLSSLEDTHHDKTAIAKEIAEACKR 60

Query:    51 WGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWK 110
             WGFFQVINHG PS L+ R+EK A EFF+   EEK+KVKRDEV+PMGYHD+EHTKNVRDWK
Sbjct:    61 WGFFQVINHGLPSALRHRVEKTAAEFFNLTTEEKRKVKRDEVNPMGYHDEEHTKNVRDWK 120

Query:   111 EVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKXXXXXXXXX 170
             E+FDF+LQD T +PASPEP+D ELR+LTNQWP+ P  FRE+C++YAREVEK         
Sbjct:   121 EIFDFFLQDSTIVPASPEPEDTELRKLTNQWPQNPSHFREVCQEYAREVEKLAFRLLELV 180

Query:   171 XXXXXXXADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQ 230
                     DRL G+F EQT+FLRFN+YPPCP PELALGVG HKDGGALTVLAQD VGGLQ
Sbjct:   181 SISLGLPGDRLTGFFNEQTSFLRFNHYPPCPNPELALGVGRHKDGGALTVLAQDSVGGLQ 240

Query:   231 VRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPA 290
             V  +SDG+WIPVKPI DA IIN+G+  QVW+ND+Y S EHRVVVNT KERFSIPFFFFP+
Sbjct:   241 VSRRSDGQWIPVKPISDALIINMGNCIQVWTNDEYWSAEHRVVVNTSKERFSIPFFFFPS 300

Query:   291 HHAMLKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFR 341
             H A ++P +E+++E+NP  Y+++NWGKF V+RNRSD+KK  VENIQI HF+
Sbjct:   301 HEANIEPLEELISEENPPCYKKYNWGKFFVSRNRSDFKKLEVENIQIDHFK 351
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.130.824
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 0.0
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 6e-84
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-82
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-77
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-74
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-70
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 7e-69
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-68
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-62
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-62
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-59
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-58
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-58
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-54
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 9e-53
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-52
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-51
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-50
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-49
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-46
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-43
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 8e-39
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-38
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-36
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-36
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-31
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-29
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 5e-10
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  558 bits (1438), Expect = 0.0
 Identities = 249/346 (71%), Positives = 291/346 (84%), Gaps = 5/346 (1%)

Query: 1   MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLST----DPKQLVLEVGHACQKWGFFQV 56
           MG++DPAFIQ PE RPK       D+EIPVIDLS     D  ++  ++G AC+KWGFFQV
Sbjct: 1   MGEIDPAFIQAPEHRPKFHL-TNSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQV 59

Query: 57  INHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFW 116
           INHG PSEL+ R+EK AKEFFDQ  EEK+KVKRDEV+PMGYHD EHTKN+RDWKEVFDF 
Sbjct: 60  INHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDSEHTKNIRDWKEVFDFL 119

Query: 117 LQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSLGL 176
           +QDPT +PASP+P+D ELR+LTNQWP+ P  FRELC++YAR+VEKLA+KLLELISLSLGL
Sbjct: 120 VQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGL 179

Query: 177 SADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSD 236
            ADRL GYFK+Q +F RFN+YPPCP P LALGVG HKDGGALTVLAQDDVGGLQ+  +SD
Sbjct: 180 PADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQISRRSD 239

Query: 237 GEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLK 296
           GEWIPVKPIPDA+IINIG+  QVW+ND Y S EHRVVVN++KERFSIPFFFFP+H+  +K
Sbjct: 240 GEWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIPFFFFPSHYVNIK 299

Query: 297 PFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIRHFRV 342
           P DE++NEQNP +Y+EFNWGKF  +RNRSDYKK  VENIQI HF+ 
Sbjct: 300 PLDELINEQNPPKYKEFNWGKFFASRNRSDYKKLEVENIQIDHFKA 345

Length = 345
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02485329 oxidoreductase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.82
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.75
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.67
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.28
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 94.61
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.49
TIGR02466201 conserved hypothetical protein. This family consis 87.58
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 86.35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=6.7e-80  Score=585.12  Aligned_cols=340  Identities=73%  Similarity=1.279  Sum_probs=296.7

Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCceeeCCC----ChHHHHHHHHHHhhhccEEEEEcCCCChHHHHHHHHHHHHh
Q 019211            1 MGDVDPAFIQPPEFRPKVQNNMEIDDEIPVIDLST----DPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEF   76 (344)
Q Consensus         1 ~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~----~~~~~~~~l~~A~~~~Gff~l~nhGi~~~l~~~~~~~~~~f   76 (344)
                      |.++|..|++++..+|..... .....||||||+.    ++.+++++|.+||+++|||||+||||+.++++++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~F   79 (345)
T PLN02750          1 MGEIDPAFIQAPEHRPKFHLT-NSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEF   79 (345)
T ss_pred             CCCCCHHHcCCchhccCcccc-ccCCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            778999999999888854321 1245899999986    46678899999999999999999999999999999999999


Q ss_pred             cCCCHHHHhhhccCCCCCcccccCCCCCCCCCcccceeeccCCCCCCCCCCCCCchHhhhccCCCCCCchhhHHHHHHHH
Q 019211           77 FDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYA  156 (344)
Q Consensus        77 F~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~  156 (344)
                      |+||.|+|+++.......+||...+...+..||+|.|+++...+...|....+....+...+|.||+.+++||+.+++|+
T Consensus        80 F~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~  159 (345)
T PLN02750         80 FDQTTEEKRKVKRDEVNPMGYHDSEHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYA  159 (345)
T ss_pred             HcCCHHHHHhhccCCCCccCcCcccccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHH
Confidence            99999999998665445679975444445679999999986544323321111112221237999998899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCChhhHhhhhcCCCceEEEEecCCCCCCccCCcccCcccCCCeeEEEeCCCCCceEEecCC
Q 019211          157 REVEKLAYKLLELISLSLGLSADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSD  236 (344)
Q Consensus       157 ~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTll~qd~~~GLqv~~~~~  236 (344)
                      +.|.+|+.+|+++|+++||+++++|.+.+.++.+.||++||||++.++..+|+++|||+|+||||+||+++||||+...+
T Consensus       160 ~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~~  239 (345)
T PLN02750        160 RQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQISRRSD  239 (345)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCceEEeecCC
Confidence            99999999999999999999999999999888899999999999877778999999999999999999999999986445


Q ss_pred             CceEEcccCCCeEEEEecchhhhhcCCcccCCCccccCCCCCCeeEEEEeecCCCCCeeecCcccccCCCCCccCccCHH
Q 019211          237 GEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAMLKPFDEIVNEQNPARYREFNWG  316 (344)
Q Consensus       237 g~W~~V~p~~g~lvVnvGd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y~~~~~~  316 (344)
                      |+|++|+|.+|++|||+||+|++||||+|||++|||+.+..++||||+||++|+.|++|+|+++++++++|++|++++|+
T Consensus       240 g~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~v~~~~p~~y~p~~~~  319 (345)
T PLN02750        240 GEWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIPFFFFPSHYVNIKPLDELINEQNPPKYKEFNWG  319 (345)
T ss_pred             CeEEEccCCCCeEEEEhHHHHHHHhCCeeecccceeccCCCCCEEEEEEeecCCCCCeecCcHHhcCCCCCCccCCccHH
Confidence            99999999999999999999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCccccceeeee
Q 019211          317 KFVVARNRSDYKKQNVENIQIRHFR  341 (344)
Q Consensus       317 e~~~~~~~~~~~~~~~~~~~~~~~~  341 (344)
                      ||+..|+...|..+..+++++.+|+
T Consensus       320 e~~~~~~~~~~~~~~~~~~~~~~~~  344 (345)
T PLN02750        320 KFFASRNRSDYKKLEVENIQIDHFK  344 (345)
T ss_pred             HHHHHHHhcccccccccceeeeccc
Confidence            9999999999988777889998875

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-37
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-37
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-35
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-27
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-16
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 9e-13
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-09
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 150/299 (50%), Gaps = 30/299 (10%)
Query: 27  EIPVIDL----STDPK---QLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQ 79
           ++P IDL    S D K     + E+  A   WG   +INHG P++L  R++KA +EFF  
Sbjct: 46  QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 80  PIEEKQKVKRDE----VHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELR 135
            +EEK+K   D+    +   G     +     +W++ F        F  A PE      +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF--------FHLAYPEE-----K 152
Query: 136 RLTNQWPEFPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQ---GYFKEQTTFL 192
           R  + WP+ P  + E   +YA+ +                   DRL+   G  +E    +
Sbjct: 153 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 212
Query: 193 RFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQVRGKSDGEWIPVKPIPDAYIIN 252
           + NYYP CP PELALGV  H D  ALT +  + V GLQ+    +G+W+  K +PD+ +++
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMH 270
Query: 253 IGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFF-PAHHAMLKPFDEIVNEQNPARY 310
           IGD  ++ SN KY+S  HR +VN EK R S   F   P    +LKP  E+V+ ++PA++
Sbjct: 271 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-134
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-129
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-119
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-118
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-109
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 6e-99
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  386 bits (993), Expect = e-134
 Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 38/351 (10%)

Query: 8   FIQPPEFRPKVQNNMEIDD-----EIPVIDLS-------TDPKQLVLEVGHACQKWGFFQ 55
           +I+P E    + +    +      ++P IDL           +  + E+  A   WG   
Sbjct: 22  YIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH 81

Query: 56  VINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVH--PMGY--HDQEHTKNVRDWKE 111
           +INHG P++L  R++KA +EFF   +EEK+K   D+      GY      +     +W++
Sbjct: 82  LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWED 141

Query: 112 VFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELIS 171
            F        F  A PE          + WP+ P  + E   +YA+ +  LA K+ + +S
Sbjct: 142 YF--------FHLAYPEEKRDL-----SIWPKTPSDYIEATSEYAKCLRLLATKVFKALS 188

Query: 172 LSLGLSADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGG 228
           + LGL  DRL+      +E    ++ NYYP CP PELALGV  H D  ALT +  + V G
Sbjct: 189 VGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPG 248

Query: 229 LQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFF 288
           LQ+    +G+W+  K +PD+ +++IGD  ++ SN KY+S  HR +VN EK R S   F  
Sbjct: 249 LQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306

Query: 289 PAHHAM-LKPFDEIVNEQNPARYREFNWGKFVVARNRSDYKKQNVENIQIR 338
           P    + LKP  E+V+ ++PA++    + + +  +    + K+  E +  +
Sbjct: 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL---FGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.71
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 91.33
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.23
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 87.42
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 83.75
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=3e-76  Score=562.00  Aligned_cols=312  Identities=33%  Similarity=0.599  Sum_probs=276.5

Q ss_pred             CCCCCCCCCCCCCCCccCC---CC--CCCCCCceeeCCC---C----hHHHHHHHHHHhhhccEEEEEcCCCChHHHHHH
Q 019211            2 GDVDPAFIQPPEFRPKVQN---NM--EIDDEIPVIDLST---D----PKQLVLEVGHACQKWGFFQVINHGAPSELKARI   69 (344)
Q Consensus         2 ~~~p~~~~~~~~~~~~~~~---~~--~~~~~iPvIDls~---~----~~~~~~~l~~A~~~~Gff~l~nhGi~~~l~~~~   69 (344)
                      .++|++|++|++++|....   ..  ....+||||||+.   .    +..++++|.+||+++|||||+||||+.++++++
T Consensus        16 ~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~   95 (356)
T 1gp6_A           16 ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERV   95 (356)
T ss_dssp             SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHH
T ss_pred             CCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHH
Confidence            3699999999887765221   00  0123799999997   1    355899999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHhhhccCCC--CCcccccC--CCCCCCCCcccceeeccCCCCCCCCCCCCCchHhhhccCCCCCCc
Q 019211           70 EKAAKEFFDQPIEEKQKVKRDEV--HPMGYHDQ--EHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFP  145 (344)
Q Consensus        70 ~~~~~~fF~lp~e~K~~~~~~~~--~~~GY~~~--~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~  145 (344)
                      ++.+++||+||.|+|+++.....  ..+||...  ....+..||+|.|+++.....           .  ..+|.||+.+
T Consensus        96 ~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~-----------~--~~~~~wP~~~  162 (356)
T 1gp6_A           96 KKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEE-----------K--RDLSIWPKTP  162 (356)
T ss_dssp             HHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGG-----------G--CCGGGSCCSS
T ss_pred             HHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCcc-----------c--cccccCCCcc
Confidence            99999999999999999976543  57899765  233457799999999853210           0  2468999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHhhhhc---CCCceEEEEecCCCCCCccCCcccCcccCCCeeEEE
Q 019211          146 LGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFK---EQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLA  222 (344)
Q Consensus       146 ~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTll~  222 (344)
                      |+||+.+++|+++|.+|+.+|+++|+++||+++++|.+.+.   .+.+.||++||||++.++..+|+++|||+|+||||+
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence            99999999999999999999999999999999999999887   477899999999999888789999999999999999


Q ss_pred             eCCCCCceEEecCCCceEEcccCCCeEEEEecchhhhhcCCcccCCCccccCCCCCCeeEEEEeecCCCCC-eeecCccc
Q 019211          223 QDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHA-MLKPFDEI  301 (344)
Q Consensus       223 qd~~~GLqv~~~~~g~W~~V~p~~g~lvVnvGd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~p~~~~  301 (344)
                      ||+++||||+.  +|+|++|+|.+|++|||+||+||+||||+|||++|||+.+.+++||||+||++|+.|+ +|.|++++
T Consensus       243 qd~v~GLQV~~--~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          243 HNMVPGLQLFY--EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             ECSCCCEEEEE--TTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EcCCCCeEEec--CCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99999999996  5999999999999999999999999999999999999998889999999999999999 99999999


Q ss_pred             ccCCCCCccCccCHHHHHHHHHhcccc
Q 019211          302 VNEQNPARYREFNWGKFVVARNRSDYK  328 (344)
Q Consensus       302 ~~~~~~~~y~~~~~~e~~~~~~~~~~~  328 (344)
                      +++++|++|+++||+||+..++++.+.
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d  347 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQ  347 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHH
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccC
Confidence            999999999999999999999988774
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-67
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-63
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-56
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-46
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  212 bits (541), Expect = 4e-67
 Identities = 102/332 (30%), Positives = 165/332 (49%), Gaps = 29/332 (8%)

Query: 8   FIQPPEFRPKVQNNM-----EIDDEIPVIDLS-------TDPKQLVLEVGHACQKWGFFQ 55
           +I+P E    + +       E   ++P IDL           +  + E+  A   WG   
Sbjct: 21  YIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH 80

Query: 56  VINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVH-PMGYHDQEHTKNVRDWKEVFD 114
           +INHG P++L  R++KA +EFF   +EEK+K   D+    +  +  +   N     E  D
Sbjct: 81  LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWED 140

Query: 115 FWLQDPTFLPASPEPDDKELRRLTNQWPEFPLGFRELCEDYAREVEKLAYKLLELISLSL 174
           ++                      + WP+ P  + E   +YA+ +  LA K+ + +S+ L
Sbjct: 141 YFFHLAYPEEKRD----------LSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGL 190

Query: 175 GLSADRLQ---GYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQV 231
           GL  DRL+   G  +E    ++ NYYP CP PELALGV  H D  ALT +  + V GLQ+
Sbjct: 191 GLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQL 250

Query: 232 RGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAH 291
               +G+W+  K +PD+ +++IGD  ++ SN KY+S  HR +VN EK R S   F  P  
Sbjct: 251 F--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 308

Query: 292 HAM-LKPFDEIVNEQNPARYREFNWGKFVVAR 322
             + LKP  E+V+ ++PA++    + + +  +
Sbjct: 309 DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.23
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.84
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-72  Score=534.46  Aligned_cols=308  Identities=33%  Similarity=0.601  Sum_probs=263.4

Q ss_pred             CCCCCCCCCCCCCCCccC-----CCCCCCCCCceeeCCC-------ChHHHHHHHHHHhhhccEEEEEcCCCChHHHHHH
Q 019211            2 GDVDPAFIQPPEFRPKVQ-----NNMEIDDEIPVIDLST-------DPKQLVLEVGHACQKWGFFQVINHGAPSELKARI   69 (344)
Q Consensus         2 ~~~p~~~~~~~~~~~~~~-----~~~~~~~~iPvIDls~-------~~~~~~~~l~~A~~~~Gff~l~nhGi~~~l~~~~   69 (344)
                      -.||++|++|+..+|...     ....+..+||||||+.       .+.+++++|.+||+++|||||+||||+.++++++
T Consensus        15 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~   94 (349)
T d1gp6a_          15 ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERV   94 (349)
T ss_dssp             SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHH
T ss_pred             ccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHH
Confidence            469999999998888752     2223456899999997       2467899999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHhhhccCCC--CCcccccC--CCCCCCCCcccceeeccCCCCCCCCCCCCCchHhhhccCCCCCCc
Q 019211           70 EKAAKEFFDQPIEEKQKVKRDEV--HPMGYHDQ--EHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEFP  145 (344)
Q Consensus        70 ~~~~~~fF~lp~e~K~~~~~~~~--~~~GY~~~--~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~  145 (344)
                      ++++++||+||.|+|+++.....  ...||...  +...+..++.+.+...... .           . ....|.||+..
T Consensus        95 ~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-----------~-~~~~n~wp~~~  161 (349)
T d1gp6a_          95 KKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYP-E-----------E-KRDLSIWPKTP  161 (349)
T ss_dssp             HHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEES-G-----------G-GCCGGGSCCSS
T ss_pred             HHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccc-c-----------c-ccccccccccc
Confidence            99999999999999999975432  22333222  2233344555443322111 0           0 13568999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHhhhhc---CCCceEEEEecCCCCCCccCCcccCcccCCCeeEEE
Q 019211          146 LGFRELCEDYAREVEKLAYKLLELISLSLGLSADRLQGYFK---EQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLA  222 (344)
Q Consensus       146 ~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~g~lTll~  222 (344)
                      +.|++.+++|+++|.+|+.+|+++++++||+++++|.+.+.   ...+.||++|||+++.+....|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            99999999999999999999999999999999999988773   356899999999999888889999999999999999


Q ss_pred             eCCCCCceEEecCCCceEEcccCCCeEEEEecchhhhhcCCcccCCCccccCCCCCCeeEEEEeecCCCCCee-ecCccc
Q 019211          223 QDDVGGLQVRGKSDGEWIPVKPIPDAYIINIGDATQVWSNDKYESPEHRVVVNTEKERFSIPFFFFPAHHAML-KPFDEI  301 (344)
Q Consensus       223 qd~~~GLqv~~~~~g~W~~V~p~~g~lvVnvGd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~  301 (344)
                      |+.++||||+.  +|+|++|+|.+|++|||+||+|++||||+||||+|||+.+.+++||||+||++|+.|++| .|++++
T Consensus       242 q~~~~GLqv~~--~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~  319 (349)
T d1gp6a_         242 HNMVPGLQLFY--EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  319 (349)
T ss_dssp             ECSCCCEEEEE--TTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             ccCCcceeeec--CCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHH
Confidence            99999999986  599999999999999999999999999999999999999988999999999999999865 899999


Q ss_pred             ccCCCCCccCccCHHHHHHHHHh
Q 019211          302 VNEQNPARYREFNWGKFVVARNR  324 (344)
Q Consensus       302 ~~~~~~~~y~~~~~~e~~~~~~~  324 (344)
                      +++++|++|+++||+||++.|+.
T Consensus       320 v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         320 VSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             cCCCCCCCCCCccHHHHHHHHHh
Confidence            99999999999999999999973
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure