Citrus Sinensis ID: 019309
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 343 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.950 | 0.776 | 0.619 | 1e-118 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.950 | 0.776 | 0.619 | 1e-118 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.950 | 0.776 | 0.619 | 1e-118 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.950 | 0.776 | 0.619 | 1e-118 | |
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.944 | 0.769 | 0.610 | 1e-115 | |
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.900 | 0.739 | 0.623 | 1e-113 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.816 | 0.918 | 0.339 | 8e-31 | |
| Q9ZAE8 | 320 | dTDP-glucose 4,6-dehydrat | yes | no | 0.868 | 0.931 | 0.310 | 5e-28 | |
| O34886 | 316 | Uncharacterized UDP-gluco | yes | no | 0.833 | 0.905 | 0.322 | 7e-28 | |
| Q6D2F1 | 673 | Bifunctional polymyxin re | yes | no | 0.909 | 0.463 | 0.282 | 3e-27 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/336 (61%), Positives = 252/336 (75%), Gaps = 10/336 (2%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
D E T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V D
Sbjct: 68 DLEKSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD 119
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN
Sbjct: 120 NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTN 179
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAE
Sbjct: 180 TIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE 239
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
T+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV G+QTR+F
Sbjct: 240 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAF 299
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
YVSD+V+GL+ LM + PVN+GNP E T+LE A+ +K L+ G EI+ + DDP+
Sbjct: 300 QYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQ 359
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
+RKPDI KAK +LGWEP V L +GL FR L
Sbjct: 360 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/336 (61%), Positives = 252/336 (75%), Gaps = 10/336 (2%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
D E T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V D
Sbjct: 68 DLEKSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD 119
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN
Sbjct: 120 NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTN 179
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAE
Sbjct: 180 TIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE 239
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
T+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV G+QTR+F
Sbjct: 240 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAF 299
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
YVSD+V+GL+ LM + PVN+GNP E T+LE A+ +K L+ G EI+ + DDP+
Sbjct: 300 QYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQ 359
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
+RKPDI KAK +LGWEP V L +GL FR L
Sbjct: 360 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/336 (61%), Positives = 252/336 (75%), Gaps = 10/336 (2%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
D E T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V D
Sbjct: 68 DLEKSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD 119
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN
Sbjct: 120 NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTN 179
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAE
Sbjct: 180 TIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE 239
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
T+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV G+QTR+F
Sbjct: 240 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAF 299
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
YVSD+V+GL+ LM + PVN+GNP E T+LE A+ +K L+ G EI+ + DDP+
Sbjct: 300 QYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQ 359
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
+RKPDI KAK +LGWEP V L +GL FR L
Sbjct: 360 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/336 (61%), Positives = 252/336 (75%), Gaps = 10/336 (2%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
D E T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V D
Sbjct: 68 DLEKSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD 119
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN
Sbjct: 120 NFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTN 179
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAE
Sbjct: 180 TIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE 239
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
T+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV G+QTR+F
Sbjct: 240 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAF 299
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
YVSD+V+GL+ LM + PVN+GNP E T+LE A+ +K L+ G EI+ + DDP+
Sbjct: 300 QYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQ 359
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
+RKPDI KAK +LGWEP V L +GL FR L
Sbjct: 360 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 248/334 (74%), Gaps = 10/334 (2%)
Query: 6 ENQTTTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63
E T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V DN+
Sbjct: 71 ERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNF 122
Query: 64 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 123
FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN I
Sbjct: 123 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTI 182
Query: 124 GTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
GTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+
Sbjct: 183 GTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETM 242
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243
+ Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GE LTV G QTR+F Y
Sbjct: 243 CYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQY 302
Query: 244 VSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQR 303
VSD+V+GL+ LM + PVN+GNP E ++++ A +K+L+ G EI + DDP++R
Sbjct: 303 VSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRR 362
Query: 304 KPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
KPDI KAK LLGWEP V L +GL FR L
Sbjct: 363 KPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/319 (62%), Positives = 243/319 (76%), Gaps = 10/319 (3%)
Query: 10 TTKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS 67
T K PP+ KF + RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG
Sbjct: 72 TQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGR 123
Query: 68 KDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLN 127
K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLN
Sbjct: 124 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLN 183
Query: 128 MLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187
MLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y
Sbjct: 184 MLGLAKRVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAY 243
Query: 188 HRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247
+Q G+++R+ARIFNT+G RM+++DGRVVSNFI QAL+GE LTV G+QTR+F YVSD+
Sbjct: 244 MKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDL 303
Query: 248 VDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDI 307
V+GL+ LM + PVN+GNP E T+LE A+ +K L+ I+ + DDP++R+PDI
Sbjct: 304 VNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDI 363
Query: 308 SKAKELLGWEPKVKLRDGL 326
KAK LLGWEP V L +GL
Sbjct: 364 RKAKLLLGWEPVVPLEEGL 382
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 160/306 (52%), Gaps = 26/306 (8%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTGGAGFIGSH+VDKL+EN +VI+ DN TG+K+N+ +P+ E + D+ +
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55
Query: 92 LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 143
L E V+ + H A + NPV NV+GT+N+L + ++ + + +S
Sbjct: 56 LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
VYG+P P E + PI S Y K V E + Y+R +GI+ I R N
Sbjct: 116 GGAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNV 170
Query: 204 YGPRMN-IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262
YG R + + V+S FI + L+ + + G QTR F YV D+ + + +N
Sbjct: 171 YGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNE-I 229
Query: 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP--DISKAKELLGWEPKV 320
VNIG E ++ EL + +K I G + + + P + + DI KA E LGW+P++
Sbjct: 230 VNIGTGKETSVNELFDIIKHEI--GFRGEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEI 286
Query: 321 KLRDGL 326
L++G+
Sbjct: 287 DLKEGI 292
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 144/322 (44%), Gaps = 24/322 (7%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENE------KNEVIVADNY-FTGSKDNLKKWIGHPRFEL 82
M+ILVTGGAGFIGSH V L+ + +V V D + G+ NL + PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSF 60
Query: 83 IRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--V 135
+R D+ + LIE D + H A + +N++GT +L A R +
Sbjct: 61 VRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHI 120
Query: 136 GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
G R L ST EVYG W +P+ S Y K ++ L YH+ HG+ +
Sbjct: 121 G-RFLHVSTDEVYGSI-----DTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDV 174
Query: 196 RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
+ R N YGPR + +++ F+ + L G + V G R + +VSD GL +
Sbjct: 175 VVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALAL 232
Query: 256 EGENTGPV-NIGNPGEFTMLELAETVKELIN-PGIEIKMVENTPDDPRQRKPDISKAKEL 313
G V +IG E T LEL E + E P I V + R+ D SK
Sbjct: 233 GAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGE 292
Query: 314 LGWEPKVKLRDGLPLMEEDFRS 335
LG+ P+V DG+ +R+
Sbjct: 293 LGYRPRVDFTDGIAETVAWYRA 314
|
Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis (strain 168) GN=ytcB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 27/313 (8%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-----FTGSKDNLKKWIGHPRFELIR 84
M+ILVTG AGFIGSHL ++L++++K+ VI D++ F+ NLK + RF I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 85 HDV----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--R 138
++ LL VD I+HLA N + I L L A R +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 139 ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIA 198
+ STS VYG+ T ++P GV K E L Y + GI I I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVIL 174
Query: 199 RIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME-- 256
R F YGPR D I Q L+ +PLT+ G Q+R F Y+SD V G+ ++
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 257 ---GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
GE VNIG ++L++ ++++ + + +P DISKAK+L
Sbjct: 233 HLIGET---VNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQL 289
Query: 314 LGWEPKVKLRDGL 326
L ++P L+DGL
Sbjct: 290 LHYDPATSLKDGL 302
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 163/354 (46%), Gaps = 42/354 (11%)
Query: 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFEL 82
S+ + R+L+ G GFIG+HL ++L+ +++ E+ D S D + +++G PRF
Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 371
Query: 83 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+ D++ E + + D I L A+PI Y NP++ + + L ++ R
Sbjct: 372 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 431
Query: 137 ARILLTSTSEVYG---DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHG 192
RI+ STSEVYG D +T V PI R Y K++ + +++ Y ++G
Sbjct: 432 KRIVFPSTSEVYGMCDDKEF--DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNG 489
Query: 193 IQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246
++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D
Sbjct: 490 LRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHD 549
Query: 247 MVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETVKELIN---------PGIEIKM 292
++ L R++E N +NIGNP E ++ EL E + N P
Sbjct: 550 GIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFID 609
Query: 293 VENTP------DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVP 340
VE++ D R P I AK LL WEP VK+ + + F + VP
Sbjct: 610 VESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRTVDVP 663
|
Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 343 | ||||||
| 358248590 | 348 | uncharacterized protein LOC100790835 [Gl | 0.991 | 0.977 | 0.941 | 0.0 | |
| 357454141 | 351 | UDP-glucuronic acid decarboxylase [Medic | 0.994 | 0.971 | 0.929 | 0.0 | |
| 60932273 | 343 | UDP-glucuronic acid decarboxylase 3 [Pop | 0.997 | 0.997 | 0.926 | 0.0 | |
| 356550259 | 348 | PREDICTED: UDP-glucuronic acid decarboxy | 0.991 | 0.977 | 0.935 | 0.0 | |
| 359806080 | 342 | uncharacterized protein LOC100819843 [Gl | 0.997 | 1.0 | 0.927 | 0.0 | |
| 255575062 | 346 | dtdp-glucose 4-6-dehydratase, putative [ | 0.994 | 0.985 | 0.914 | 0.0 | |
| 192338748 | 346 | UDP-D-glucuronate carboxy-lyase [Eucalyp | 0.997 | 0.988 | 0.906 | 0.0 | |
| 224109544 | 346 | predicted protein [Populus trichocarpa] | 0.997 | 0.988 | 0.906 | 0.0 | |
| 388495536 | 346 | unknown [Lotus japonicus] | 0.997 | 0.988 | 0.909 | 0.0 | |
| 356539032 | 342 | PREDICTED: UDP-glucuronic acid decarboxy | 0.997 | 1.0 | 0.918 | 0.0 |
| >gi|358248590|ref|NP_001239907.1| uncharacterized protein LOC100790835 [Glycine max] gi|255641885|gb|ACU21211.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/340 (94%), Positives = 332/340 (97%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63
+G +QTTTK PPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKNEVIVADNY
Sbjct: 9 NGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNY 68
Query: 64 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 123
FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI
Sbjct: 69 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 128
Query: 124 GTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
GTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQPE+YWGNVNPIGVRSCYDEGKRVAETL
Sbjct: 129 GTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETL 188
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243
MFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ PGTQTRSFCY
Sbjct: 189 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCY 248
Query: 244 VSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQR 303
VSD+VDGLIRLMEG NTGP+N+GNPGEFTM ELAETVKELINPG+EIKMVENTPDDPRQR
Sbjct: 249 VSDLVDGLIRLMEGSNTGPINLGNPGEFTMTELAETVKELINPGVEIKMVENTPDDPRQR 308
Query: 304 KPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
KPDI+KAKELLGWEPKVKLRDGLP MEEDFR RLGV K+N
Sbjct: 309 KPDITKAKELLGWEPKVKLRDGLPRMEEDFRLRLGVGKKN 348
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454141|ref|XP_003597351.1| UDP-glucuronic acid decarboxylase [Medicago truncatula] gi|217074092|gb|ACJ85406.1| unknown [Medicago truncatula] gi|355486399|gb|AES67602.1| UDP-glucuronic acid decarboxylase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/341 (92%), Positives = 331/341 (97%)
Query: 3 NDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62
++G+ QTTTK PPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKNEVIVADN
Sbjct: 11 HNGDQQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADN 70
Query: 63 YFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 122
YFTG KDNLKKWIGHPRFELIRHDVTE LL+EVD+IYHLACPASPIFYKYNPVKTIKTNV
Sbjct: 71 YFTGCKDNLKKWIGHPRFELIRHDVTETLLVEVDRIYHLACPASPIFYKYNPVKTIKTNV 130
Query: 123 IGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182
IGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET
Sbjct: 131 IGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 190
Query: 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242
LMFDYHRQHG++IRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGTQTRSFC
Sbjct: 191 LMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQLPGTQTRSFC 250
Query: 243 YVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ 302
YVSDMVDGLIRLMEGENTGP+NIGNPGEFTM ELAE VKELINP +EIKMVENTPDDPRQ
Sbjct: 251 YVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAENVKELINPAVEIKMVENTPDDPRQ 310
Query: 303 RKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
RKPDI+KA ELLGWEPKVKLRDGLPLMEEDFR RLGVP++N
Sbjct: 311 RKPDITKATELLGWEPKVKLRDGLPLMEEDFRLRLGVPRKN 351
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|60932273|gb|AAX37336.1| UDP-glucuronic acid decarboxylase 3 [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/342 (92%), Positives = 330/342 (96%)
Query: 1 MANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
MA++G++QTT KPPP PSPLR SKF QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA
Sbjct: 1 MASNGDHQTTVKPPPSPSPLRNSKFSQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
Query: 61 DNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKT 120
DNYFTGSKDNL+KWIG PRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKT
Sbjct: 61 DNYFTGSKDNLRKWIGQPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKT 120
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180
NVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQPE+YWGNVNPIGVRSCYDEGKRVA
Sbjct: 121 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVA 180
Query: 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
ETLMFDYHRQHGI+ RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS
Sbjct: 181 ETLMFDYHRQHGIEFRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
Query: 241 FCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP 300
FCYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM ELAETVKELINPG+EI MVENTPDDP
Sbjct: 241 FCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAETVKELINPGVEINMVENTPDDP 300
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 342
RQRKPDI+KAK LLGWEPKVKLRDGLPLMEED R RLGV K+
Sbjct: 301 RQRKPDITKAKALLGWEPKVKLRDGLPLMEEDLRLRLGVTKK 342
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550259|ref|XP_003543505.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/340 (93%), Positives = 330/340 (97%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63
+G +QTTTK PPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKNEVIVADNY
Sbjct: 9 NGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNY 68
Query: 64 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 123
FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI
Sbjct: 69 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 128
Query: 124 GTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
GTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQPE+YWGNVNPIGVRSCYDEGKRVAETL
Sbjct: 129 GTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETL 188
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243
MFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ PGTQTRSFCY
Sbjct: 189 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCY 248
Query: 244 VSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQR 303
VSD+VDGLIRLM G NTGP+N+GNPGEFTM ELAETVKELINPG+EIKMVENTPDDPRQR
Sbjct: 249 VSDLVDGLIRLMGGSNTGPINLGNPGEFTMTELAETVKELINPGVEIKMVENTPDDPRQR 308
Query: 304 KPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
KPDI+KAKELLGWEPKVKLRDGLP MEEDFR RL V K+N
Sbjct: 309 KPDITKAKELLGWEPKVKLRDGLPRMEEDFRLRLEVGKKN 348
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806080|ref|NP_001240928.1| uncharacterized protein LOC100819843 [Glycine max] gi|255646194|gb|ACU23582.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/343 (92%), Positives = 328/343 (95%), Gaps = 1/343 (0%)
Query: 1 MANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
MA + N TK PP+PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA
Sbjct: 1 MATNSSN-GATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 59
Query: 61 DNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKT 120
DN+FTGSKDNLKKWIGHPRFELIRHDVTE LLIEVDQIYHLACPASPIFYKYNPVKTIKT
Sbjct: 60 DNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKT 119
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180
NVIGTLNMLGLAKRVGARILLTSTSEVYGDPL HPQPE+YWGNVNPIGVRSCYDEGKRVA
Sbjct: 120 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPESYWGNVNPIGVRSCYDEGKRVA 179
Query: 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
ETLMFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGTQTRS
Sbjct: 180 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRS 239
Query: 241 FCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP 300
FCYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM+ELAE VKELINP +EI MVENTPDDP
Sbjct: 240 FCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPKVEINMVENTPDDP 299
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
RQRKPDI+KAKELLGWEPKVKLRDGLPLMEEDFR RLGVPK N
Sbjct: 300 RQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVPKSN 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575062|ref|XP_002528436.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gi|223532112|gb|EEF33919.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/341 (91%), Positives = 329/341 (96%)
Query: 2 ANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
++G++ + +KPPP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV D
Sbjct: 5 VSNGDHSSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct: 65 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 124
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ E+YWGNVNPIGVRSCYDEGKRVAE
Sbjct: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRSCYDEGKRVAE 184
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
TLMFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQA+R EPLTVQ PGTQTRSF
Sbjct: 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRNEPLTVQAPGTQTRSF 244
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
CYVSDMVDGLIRLMEGENTGP+NIGNPGEFTMLELAETVKELINP +EI VENTPDDPR
Sbjct: 245 CYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAETVKELINPDVEIAKVENTPDDPR 304
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 342
QRKPDI+KAKELLGWEPK+KLRDGLPLME+DFR RLGVP++
Sbjct: 305 QRKPDITKAKELLGWEPKIKLRDGLPLMEDDFRLRLGVPRK 345
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|192338748|gb|ACF04279.1| UDP-D-glucuronate carboxy-lyase [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/342 (90%), Positives = 330/342 (96%)
Query: 2 ANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
A++GEN + KPPP PSPLRFSKFFQ NMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD
Sbjct: 5 ASNGENHSVAKPPPTPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 64
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTG+K+NLKKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct: 65 NFFTGTKENLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTN 124
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ E+YWGNVNPIGVRSCYDEGKRVAE
Sbjct: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
TLMFDYHRQHGI+IR+ARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGTQTRSF
Sbjct: 185 TLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQAPGTQTRSF 244
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
CYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM+ELAETVKELINP +EI MVENTPDDPR
Sbjct: 245 CYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAETVKELINPDVEITMVENTPDDPR 304
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
QRKPDI+KAKELLGWEPKVKLR+GLPLME+DFR RL P++N
Sbjct: 305 QRKPDITKAKELLGWEPKVKLRNGLPLMEDDFRLRLDKPRKN 346
|
Source: Eucalyptus grandis Species: Eucalyptus grandis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109544|ref|XP_002315231.1| predicted protein [Populus trichocarpa] gi|118483816|gb|ABK93800.1| unknown [Populus trichocarpa] gi|118485318|gb|ABK94518.1| unknown [Populus trichocarpa] gi|222864271|gb|EEF01402.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/342 (90%), Positives = 329/342 (96%)
Query: 2 ANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
A++G++ + K PP PSPLRFSKFFQSNMRIL+TGGAGFIGSHLVD+LMENEKNEVIVAD
Sbjct: 5 ASNGDHNSAAKAPPTPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEVIVAD 64
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
NYFTGSKDNLKKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct: 65 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTN 124
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQ E+YWGNVNPIGVRSCYDEGKRVAE
Sbjct: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQNESYWGNVNPIGVRSCYDEGKRVAE 184
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
TLMFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQA+R EPLTVQ PGTQTRSF
Sbjct: 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQAPGTQTRSF 244
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
CYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM+ELAE VKELINP ++I VENTPDDPR
Sbjct: 245 CYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPEVKIISVENTPDDPR 304
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
QRKPDI+KAKELLGWEPK+KLRDGLPLMEEDFR RLGVP++N
Sbjct: 305 QRKPDITKAKELLGWEPKIKLRDGLPLMEEDFRQRLGVPRKN 346
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495536|gb|AFK35834.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/342 (90%), Positives = 330/342 (96%)
Query: 2 ANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61
+++G++Q K PPLPSPLRFSKFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEVIVAD
Sbjct: 5 SSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEVIVAD 64
Query: 62 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 121
N+FTGSKDNLKKWIGHPRFELIRHDVTE LL+EVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct: 65 NFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKTIKTN 124
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPE+YWGNVNPIGVRSCYDEGKRVAE
Sbjct: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAE 184
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
TLMFDYH QHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGT+TRSF
Sbjct: 185 TLMFDYHTQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTRTRSF 244
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
CYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM+ELAE VKELIN +EIKM+ENTPDDPR
Sbjct: 245 CYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINSTVEIKMIENTPDDPR 304
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
QRKPDI+KAKELLGWEPKVKLRDGLPLMEEDFR RLGV K+N
Sbjct: 305 QRKPDIAKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVAKKN 346
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539032|ref|XP_003538004.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Glycine max] gi|356539034|ref|XP_003538005.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/343 (91%), Positives = 327/343 (95%), Gaps = 1/343 (0%)
Query: 1 MANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
MA + N TK PP+PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA
Sbjct: 1 MATNSSN-GATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 59
Query: 61 DNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKT 120
DNYFTGSKDNLK+WIGHPRFELIRHDVTE LLIEVDQIYHLACPASPIFYKYNPVKTIKT
Sbjct: 60 DNYFTGSKDNLKRWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKT 119
Query: 121 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180
NVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQPE+YWGNVNPIGVRSCYDEGKRVA
Sbjct: 120 NVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVA 179
Query: 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
ETLMFDYHRQHGI+IRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGTQTRS
Sbjct: 180 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRS 239
Query: 241 FCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP 300
FCYVSDMVDGLIRLMEGENTGP+NIGNPGEFTM+ELAE VKELINP ++I MVENTPDDP
Sbjct: 240 FCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPKVQINMVENTPDDP 299
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
RQRKPDI+KAKELL WEPKVKL DGLPLMEEDFR RLGVPK N
Sbjct: 300 RQRKPDITKAKELLRWEPKVKLYDGLPLMEEDFRQRLGVPKSN 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 343 | ||||||
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.918 | 0.923 | 0.949 | 9e-164 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.918 | 0.882 | 0.939 | 1e-162 | |
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.921 | 0.921 | 0.933 | 1.3e-162 | |
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.903 | 0.696 | 0.729 | 1e-123 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.909 | 0.741 | 0.651 | 7.8e-110 | |
| UNIPROTKB|E1BMI4 | 420 | UXS1 "Uncharacterized protein" | 0.909 | 0.742 | 0.645 | 1.5e-108 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.909 | 0.859 | 0.642 | 1.9e-108 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.909 | 0.742 | 0.642 | 1.9e-108 | |
| MGI|MGI:1915133 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.909 | 0.742 | 0.642 | 1.9e-108 | |
| RGD|628680 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.909 | 0.742 | 0.642 | 1.9e-108 |
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
Identities = 299/315 (94%), Positives = 311/315 (98%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
QSNMRIL++GGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD
Sbjct: 26 QSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 85
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE
Sbjct: 86 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 145
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGDPLIHPQPE+YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI+IRIARIFNTYGP
Sbjct: 146 VYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 205
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266
RMNIDDGRVVSNFIAQALRGE LTVQKPGTQTRSFCYVSDMVDGL+RLMEG++TGP+NIG
Sbjct: 206 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIG 265
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
NPGEFTM+ELAETVKELINP IEIKMVENTPDDPRQRKPDI+KAKE+LGWEPKVKLR+GL
Sbjct: 266 NPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGL 325
Query: 327 PLMEEDFRSRLGVPK 341
PLMEEDFR RLGV K
Sbjct: 326 PLMEEDFRLRLGVHK 340
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1584 (562.7 bits), Expect = 1.0e-162, P = 1.0e-162
Identities = 296/315 (93%), Positives = 309/315 (98%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
Q NMRIL++GGAGFIGSHLVDKLMENEKNEV+VADNYFTGSK+NLKKWIGHPRFELIRHD
Sbjct: 42 QPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSKENLKKWIGHPRFELIRHD 101
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
VTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE
Sbjct: 102 VTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 161
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGDPLIHPQPE+YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI+IRIARIFNTYGP
Sbjct: 162 VYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 221
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266
RMNIDDGRVVSNFIAQALRGE LTVQKPGTQTRSFCYVSDMVDGLIRLMEG +TGP+NIG
Sbjct: 222 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIG 281
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
NPGEFTM+ELAETVKELINP IEIKMVENTPDDPRQRKPDISKAKE+LGWEPKVKLR+GL
Sbjct: 282 NPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGL 341
Query: 327 PLMEEDFRSRLGVPK 341
PLMEEDFR RL VP+
Sbjct: 342 PLMEEDFRLRLNVPR 356
|
|
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1583 (562.3 bits), Expect = 1.3e-162, P = 1.3e-162
Identities = 295/316 (93%), Positives = 309/316 (97%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
QSNMRILVTGGAGFIGSHLVDKLM+NEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD
Sbjct: 28 QSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 87
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
VTEPL +EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE
Sbjct: 88 VTEPLFVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 147
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGDPL+HPQ E+YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI+IRIARIFNTYGP
Sbjct: 148 VYGDPLVHPQTESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 207
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266
RMNIDDGRVVSNFIAQALRGE LTVQKPGTQTRSFCYVSDMV+GL+RLMEG+ TGP+NIG
Sbjct: 208 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVEGLMRLMEGDQTGPINIG 267
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
NPGEFTM+ELAETVKELI P +EIKMVENTPDDPRQRKPDISKAKE+LGWEPKVKLR+GL
Sbjct: 268 NPGEFTMVELAETVKELIKPDVEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGL 327
Query: 327 PLMEEDFRSRLGVPKR 342
PLMEEDFR RLGVPK+
Sbjct: 328 PLMEEDFRLRLGVPKK 343
|
|
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 227/311 (72%), Positives = 262/311 (84%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
+ +R++VTGGAGF+GSHLVD+LM + VIV DN+FTG K+N+ +P FE+IRHD
Sbjct: 116 RKGLRVVVTGGAGFVGSHLVDRLMARG-DTVIVVDNFFTGRKENVMHHFSNPNFEMIRHD 174
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGDPL HPQ ETYWGNVNPIGVRSCYDEGKR AETL DYHR +++RIARIFNTYGP
Sbjct: 235 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGP 294
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266
RM IDDGRVVSNF+AQALR EPLTV G QTRSF +VSD+V+GL+RLMEGE+ GP N+G
Sbjct: 295 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 354
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
NPGEFTMLELA+ V+E I+P I+ NT DDP +RKPDI+KAKELLGWEPKV LR GL
Sbjct: 355 NPGEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGL 414
Query: 327 PLMEEDFRSRL 337
PLM +DFR R+
Sbjct: 415 PLMVKDFRQRV 425
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 204/313 (65%), Positives = 245/313 (78%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 91 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 149
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 150 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 209
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 210 PEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 269
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV PGTQTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 270 NDGRVVSNFILQALQGEPLTVYGPGTQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 329
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K+L+ G EI+ + DDP++RKPDI KAK LLGWEP V L +GL
Sbjct: 330 HTILEFAQLIKKLVGSGSEIQFLSEAQDDPQKRKPDIRKAKLLLGWEPVVPLEEGLNKAI 389
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 390 HYFRKELEYQANN 402
|
|
| UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 202/313 (64%), Positives = 243/313 (77%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RILVTGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 90 RILVTGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 328
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 329 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 388
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 389 HYFRKELEYQANN 401
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 201/313 (64%), Positives = 243/313 (77%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 33 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 91
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 92 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 151
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 152 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 211
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 212 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 271
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 272 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 331
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 332 HYFRKELEYQANN 344
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 201/313 (64%), Positives = 243/313 (77%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 328
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 329 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 388
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 389 HYFRKELEYQANN 401
|
|
| MGI|MGI:1915133 Uxs1 "UDP-glucuronate decarboxylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 201/313 (64%), Positives = 243/313 (77%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 328
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 329 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 388
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 389 HYFRKELEYQANN 401
|
|
| RGD|628680 Uxs1 "UDP-glucuronate decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 201/313 (64%), Positives = 243/313 (77%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 328
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 329 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 388
Query: 331 EDFRSRLGVPKRN 343
FR L N
Sbjct: 389 HYFRKELEYQANN 401
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q6GMI9 | UXS1_DANRE | 4, ., 1, ., 1, ., 3, 5 | 0.6238 | 0.9008 | 0.7392 | yes | no |
| Q5R885 | UXS1_PONAB | 4, ., 1, ., 1, ., 3, 5 | 0.6190 | 0.9504 | 0.7761 | yes | no |
| Q57664 | GALE_METJA | 5, ., 1, ., 3, ., 2 | 0.3398 | 0.8163 | 0.9180 | yes | no |
| Q8NBZ7 | UXS1_HUMAN | 4, ., 1, ., 1, ., 3, 5 | 0.6190 | 0.9504 | 0.7761 | yes | no |
| Q9ZAE8 | RMLB_ACTS5 | 4, ., 2, ., 1, ., 4, 6 | 0.3105 | 0.8688 | 0.9312 | yes | no |
| Q5PQX0 | UXS1_RAT | 4, ., 1, ., 1, ., 3, 5 | 0.6190 | 0.9504 | 0.7761 | yes | no |
| Q91XL3 | UXS1_MOUSE | 4, ., 1, ., 1, ., 3, 5 | 0.6190 | 0.9504 | 0.7761 | yes | no |
| Q6DF08 | UXS1_XENTR | 4, ., 1, ., 1, ., 3, 5 | 0.6107 | 0.9446 | 0.7695 | yes | no |
| O34886 | YTCB_BACSU | 4, ., -, ., -, ., - | 0.3226 | 0.8338 | 0.9050 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_X1860 | SubName- Full=Putative uncharacterized protein; (347 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.2059.13.1 | annotation not avaliable (156 aa) | • | • | • | 0.591 | ||||||
| gw1.2059.8.1 | Predicted protein (274 aa) | • | • | • | 0.514 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 343 | |||
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 0.0 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 0.0 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 1e-178 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 6e-84 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-79 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 1e-67 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 4e-58 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-57 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 2e-54 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 5e-54 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 1e-51 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 2e-46 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-43 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 4e-43 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-40 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 7e-39 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 3e-38 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 5e-38 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 9e-38 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 9e-37 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 3e-36 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 7e-36 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-35 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 7e-31 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 2e-30 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 8e-28 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 1e-26 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 1e-25 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 5e-25 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 2e-24 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 2e-22 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-21 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 1e-20 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 8e-20 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-18 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 1e-18 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 1e-18 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 3e-18 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 9e-18 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 1e-17 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 4e-17 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 4e-16 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 2e-15 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-15 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 3e-15 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 8e-15 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 3e-14 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 6e-13 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 6e-13 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-12 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-12 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-12 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 3e-11 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 4e-11 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 6e-11 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 6e-11 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 2e-10 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 2e-10 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-10 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 1e-09 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 1e-09 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 1e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 3e-09 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 5e-09 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 4e-08 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 5e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 6e-08 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 7e-08 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 7e-07 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 1e-06 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 8e-06 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 9e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-05 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 2e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 3e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 7e-05 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 9e-05 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 5e-04 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.001 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 0.002 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 0.002 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 0.002 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 0.004 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 606 bits (1565), Expect = 0.0
Identities = 219/306 (71%), Positives = 253/306 (82%), Gaps = 2/306 (0%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
RIL+TGGAGF+GSHL D+L+ + +EVI DN+FTG K N++ IGHP FE IRHDVTE
Sbjct: 1 KRILITGGAGFLGSHLCDRLL-EDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTE 59
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149
PL +EVDQIYHLACPASP+ Y+YNP+KT+KTNV+GTLNMLGLAKRVGAR+LL STSEVYG
Sbjct: 60 PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYG 119
Query: 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209
DP +HPQPE+YWGNVNPIG RSCYDEGKRVAETL YHRQHG+ +RIARIFNTYGPRM+
Sbjct: 120 DPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMH 179
Query: 210 IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPVNIGNP 268
+DGRVVSNFI QALRGEP+TV GTQTRSF YVSD+V+GLIRLM + GPVN+GNP
Sbjct: 180 PNDGRVVSNFIVQALRGEPITVYGDGTQTRSFQYVSDLVEGLIRLMNSDYFGGPVNLGNP 239
Query: 269 GEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 328
EFT+LELAE VK+L EI + DDP++R+PDISKAKELLGWEPKV L +GL
Sbjct: 240 EEFTILELAELVKKLTGSKSEIVFLPLPEDDPKRRRPDISKAKELLGWEPKVPLEEGLRR 299
Query: 329 MEEDFR 334
E FR
Sbjct: 300 TIEYFR 305
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 517 bits (1334), Expect = 0.0
Identities = 228/308 (74%), Positives = 262/308 (85%), Gaps = 1/308 (0%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
+R++VTGGAGF+GSHLVD+LM + VIV DN+FTG K+N+ +P FELIRHDV E
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149
P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 179 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238
Query: 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209
DPL HPQ ETYWGNVNPIGVRSCYDEGKR AETL DYHR +++RIARIFNTYGPRM
Sbjct: 239 DPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMC 298
Query: 210 IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPG 269
IDDGRVVSNF+AQALR EPLTV G QTRSF +VSD+V+GL+RLMEGE+ GP N+GNPG
Sbjct: 299 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPG 358
Query: 270 EFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329
EFTMLELA+ V+E I+P +I+ NT DDP +RKPDI+KAKELLGWEPKV LR GLPLM
Sbjct: 359 EFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLM 418
Query: 330 EEDFRSRL 337
+DFR R+
Sbjct: 419 VKDFRQRV 426
|
Length = 442 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 500 bits (1288), Expect = e-178
Identities = 230/311 (73%), Positives = 262/311 (84%), Gaps = 1/311 (0%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
+ +RI+VTGGAGF+GSHLVDKL+ +EVIV DN+FTG K+NL G+PRFELIRHD
Sbjct: 118 RKRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
V EP+L+EVDQIYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYGDPL HPQ ETYWGNVNPIG RSCYDEGKR AETL DYHR G+++RIARIFNTYGP
Sbjct: 237 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGP 296
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266
RM +DDGRVVSNF+AQ +R +P+TV G QTRSF YVSD+VDGL+ LMEGE+ GP N+G
Sbjct: 297 RMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLG 356
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
NPGEFTMLELAE VKE I+ I+ NT DDP +RKPDISKAKELL WEPK+ LR+GL
Sbjct: 357 NPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGL 416
Query: 327 PLMEEDFRSRL 337
PLM DFR+R+
Sbjct: 417 PLMVSDFRNRI 427
|
Length = 436 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 255 bits (655), Expect = 6e-84
Identities = 126/314 (40%), Positives = 172/314 (54%), Gaps = 21/314 (6%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+LVTGGAGFIGSHLV++L+E +EVIV DN TG K+NL + P + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPE--VKPNVKFIEGDIRDD 57
Query: 89 ---EPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
E VD ++H A AS P + +P+K + NV+GTLN+L A++ G R + S
Sbjct: 58 ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTLNLLEAARKAGVKRFVYAS 116
Query: 144 TSEVYGDPLIHPQPETYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFN 202
+S VYGDP P+ E + N ++P V K E + R +G+ R FN
Sbjct: 117 SSSVYGDPPYLPKDEDHPPNPLSPYAV------SKYAGELYCQVFARLYGLPTVSLRYFN 170
Query: 203 TYGPRMNIDDGR--VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
YGPR + + G V+ FI +AL+GEP T+ G QTR F YV D+V+ +
Sbjct: 171 VYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLAATAGAG 230
Query: 261 GPV-NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319
G V NIG ++ ELAE ++E++ +E P D R DISKAK+LLGWEPK
Sbjct: 231 GEVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVRHSLADISKAKKLLGWEPK 290
Query: 320 VKLRDGLPLMEEDF 333
V +GL L E F
Sbjct: 291 VSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 2e-79
Identities = 122/318 (38%), Positives = 161/318 (50%), Gaps = 16/318 (5%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MRILVTGGAGFIGSHLV++L+ ++V D G L + +L D+ +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPLLS-GVEFVVLDLTDRDLVD 58
Query: 90 PLLIEV-DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST-S 145
L V D + HLA +S +P + + NV GTLN+L A+ G R + S+ S
Sbjct: 59 ELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
VYGDP P E G P + Y K AE L+ Y R +G+ + I R FN YG
Sbjct: 119 VVYGDPPPLPIDEDL-GPPRP---LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYG 174
Query: 206 PRMNID-DGRVVSNFIAQALRGEPL-TVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
P D VVS FI Q L+GEP+ + G+QTR F YV D+ D L+ +E + G
Sbjct: 175 PGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGGVF 234
Query: 264 NIGNPG-EFTMLELAETVKELIN---PGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319
NIG+ E T+ ELAE V E + P I + D + DISKA+ LGWEPK
Sbjct: 235 NIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPK 294
Query: 320 VKLRDGLPLMEEDFRSRL 337
V L +GL E +L
Sbjct: 295 VSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 1e-67
Identities = 109/314 (34%), Positives = 154/314 (49%), Gaps = 26/314 (8%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
+LVTG GFIGSHL ++L+ E +EV D Y + + L H RF I DV +
Sbjct: 1 NVLVTGADGFIGSHLTERLLR-EGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDA 59
Query: 91 LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST 144
+E D ++HLA + + P+ ++TNV GTLN+L A + R++ TST
Sbjct: 60 SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTST 119
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGV----RSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
SEVYG P E +P+ RS Y K+ A+ L + Y R G+ + I R
Sbjct: 120 SEVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174
Query: 201 FNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
FNTYGPR V+ I+Q G+ L G+ TR F +V D G I +++
Sbjct: 175 FNTYGPRQ--SARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDILDAIEA 232
Query: 261 --GPVNIGNPGEFTMLELA-ETVKELINPGIEIKMVENTPDDP-----RQRKPDISKAKE 312
+N G+ E ++ A E + E + + I ++ P +R PDI KAK
Sbjct: 233 VGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREYRPGYSEVERRIPDIRKAKR 292
Query: 313 LLGWEPKVKLRDGL 326
LLGWEPK LRDGL
Sbjct: 293 LLGWEPKYSLRDGL 306
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 4e-58
Identities = 105/302 (34%), Positives = 148/302 (49%), Gaps = 23/302 (7%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RILVTGGAGFIGSHLVD+L+E E NEV+V DN +G ++N++ + F ++ D+ +
Sbjct: 1 RILVTGGAGFIGSHLVDRLLE-EGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59
Query: 91 L----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
+ D ++HLA +P ++ NV+ T N+L + G RI+ S+S
Sbjct: 60 ADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASSS 119
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
VYG+ + P PE Y PI S Y K AE L+ Y G Q I R N G
Sbjct: 120 TVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIVG 174
Query: 206 PRMNIDDGRVVSNFIAQALRGEP--LTVQKPGTQTRSFCYVSDMVDGLIRLME--GENTG 261
PR V+ +FI + L+ P L V G Q +S+ YVSD VD ++ E E
Sbjct: 175 PRST---HGVIYDFINK-LKRNPNELEVLGDGRQRKSYLYVSDCVDAMLLAWEKSTEGVN 230
Query: 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENT---PDDPRQRKPDISKAKELLGWEP 318
N+GN ++ E+AE V E + K D + DI K K LGW+P
Sbjct: 231 IFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMRLDIEKLK-ALGWKP 289
Query: 319 KV 320
+
Sbjct: 290 RY 291
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-57
Identities = 83/238 (34%), Positives = 112/238 (47%), Gaps = 41/238 (17%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTGGAGFIGSHLV +L +EV+V D
Sbjct: 1 ILVTGGAGFIGSHLVRRL-LERGHEVVVIDRL---------------------------- 31
Query: 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 150
D + HLA NP + +TNV+GTLN+L A++ G R + S++ VYG
Sbjct: 32 ----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGS 87
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P P+ E P+ S Y K AE L+ Y +G+ + I R+ N YGP
Sbjct: 88 PEGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRP 142
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIG 266
VV++FI +AL G+PLTV G QTR F +V D+V ++ +E G NIG
Sbjct: 143 RLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 2e-54
Identities = 101/307 (32%), Positives = 133/307 (43%), Gaps = 14/307 (4%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
R LVTG GFIGSHL ++L E + V AD +L +
Sbjct: 2 RALVTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 91 LLIEVDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 148
VD ++HLA + Y + N + N + NML A+ G R L S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
Query: 149 GDPLIHPQPETYWG----NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTY 204
P T + P + Y K E L Y+ +GI+ RI R N Y
Sbjct: 121 --PEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRFHNIY 178
Query: 205 GPRMNIDDGR-----VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259
GPR D GR + +A A G+ + G QTRSF Y+ D V+GL RLME +
Sbjct: 179 GPRGTWDGGREKAPAAMCRKVATAKDGDRFEIWGDGLQTRSFTYIDDCVEGLRRLMESDF 238
Query: 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319
PVN+G+ +M ELAE V +EI P R R D + KE LGWEP
Sbjct: 239 GEPVNLGSDEMVSMNELAEMVLSFSGKPLEIIHHTPGPQGVRGRNSDNTLLKEELGWEPN 298
Query: 320 VKLRDGL 326
L +GL
Sbjct: 299 TPLEEGL 305
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 5e-54
Identities = 86/249 (34%), Positives = 118/249 (47%), Gaps = 30/249 (12%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTGG GFIGSHLV +L++ E EVI + R D+T+P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQ-EGYEVI---VLGRRRRSESL---NTGRIRFHEGDLTDPD 53
Query: 92 LIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 139
+E D + HLA AS +P I+ NV+GTL +L A+R G R
Sbjct: 54 ALERLLAEVQPDAVIHLAAQSGVGAS----FEDPADFIRANVLGTLRLLEAARRAGVKRF 109
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
+ S+SEVYGD P E P+G S Y K AE L+ Y R +G++ I R
Sbjct: 110 VFASSSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILR 164
Query: 200 IFNTYGPR-MNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME-G 257
+FN YGP + V+ I + L G+P+ + GTQ R F YV D+ ++ +E
Sbjct: 165 LFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLALEHP 224
Query: 258 ENTGPVNIG 266
+ NIG
Sbjct: 225 DGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-51
Identities = 104/313 (33%), Positives = 155/313 (49%), Gaps = 26/313 (8%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDV 87
M+ILVTGGAGFIGS+ V L+ + ++I D + G+ +NL+ PR+ ++ D+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60
Query: 88 TEPLLI-------EVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+ L+ ++D + H A S I +P I+TNV+GT +L A++ G
Sbjct: 61 CDAELVDRLFEEEKIDAVIHFAAESHVDRS-I---SDPEPFIRTNVLGTYTLLEAARKYG 116
Query: 137 A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
R + ST EVYGD L+ T + P S Y K A+ L+ YHR +G+ +
Sbjct: 117 VKRFVHISTDEVYGD-LLDDGEFTETSPLAP---TSPYSASKAAADLLVRAYHRTYGLPV 172
Query: 196 RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
I R N YGP + +++ FI AL G+PL + G R + YV D + ++
Sbjct: 173 VITRCSNNYGPYQFPE--KLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHARAIELVL 230
Query: 256 EGENTGPV-NIGNPGEFTMLELAETVKE-LINPGIEIKMVENTPDDPRQRKPDISKAKEL 313
E G + NIG E T LEL + + E L I V++ P R+ D SK +
Sbjct: 231 EKGRVGEIYNIGGGNELTNLELVKLILELLGKDESLITYVKDRPGHDRRYAIDSSKIRRE 290
Query: 314 LGWEPKVKLRDGL 326
LGW PKV +GL
Sbjct: 291 LGWRPKVSFEEGL 303
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 2e-46
Identities = 104/311 (33%), Positives = 150/311 (48%), Gaps = 39/311 (12%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFT--GSKDNLKKWIGHPRFELIRHDVT 88
+LVTG GFIGSHLV+ L+ V N F G D + + E++ D+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEV-KDKIEVVTGDIR 59
Query: 89 EPLLIE-----VDQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILL 141
+P + D ++HLA + I Y Y P + TNV GTLN+L A+ +G +++
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIA-IPYSYIAPDSYVDTNVTGTLNVLQAARDLGVEKVVH 118
Query: 142 TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
TSTSEVYG P E + P+ +S Y K A+ L ++R + I R F
Sbjct: 119 TSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVTIIRPF 173
Query: 202 NTYGPRMNIDDGR-VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
NTYGPR + R V+ I Q G+ + TR F YV+D V G I + E + T
Sbjct: 174 NTYGPRQS---ARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRGFIAIAESDKT 230
Query: 261 -GPV-NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP----------DIS 308
G V NIG+ E ++ + + + E++ +EI+ D+ R R P D S
Sbjct: 231 VGEVINIGSNFEISIGDTVKLIAEIMGSEVEIET-----DEERLR-PEKSEVERLWCDNS 284
Query: 309 KAKELLGWEPK 319
K KEL GW+PK
Sbjct: 285 KIKELTGWQPK 295
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-43
Identities = 102/337 (30%), Positives = 154/337 (45%), Gaps = 41/337 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN----YFTGSKDNLKKWIGHPRFELIRH 85
MR+L+TGGAGFIGS+L ++ EVI DN G+ LK +
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59
Query: 86 DV-----TEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A 137
D+ E L ++D I H A P+ +P +TN +GTLN+L A++ A
Sbjct: 60 DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSAS-SPRLDFETNALGTLNVLEAARQHAPNA 118
Query: 138 RILLTSTSEVYGD-----PLIHPQPETYW----GNVNPIGV---------RSCYDEGKRV 179
+ TST++VYGD PL + ET + +P G+ S Y K
Sbjct: 119 PFIFTSTNKVYGDLPNYLPLE--ELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGA 176
Query: 180 AETLMFDYHRQHGIQIRIARIFNTYGPR-MNIDDGRVVSNFIAQALRGEPLTVQ-KPGTQ 237
A+ + +Y R G++ + R GPR +D V+ F+ A+ G+PLT+ G Q
Sbjct: 177 ADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQ 236
Query: 238 TRSFCYVSDMVDGLIRLMEGEN--TGPV-NIGNPGE--FTMLELAETVKELINPGIEIKM 292
R + +D+V+ +R + + G V NIG E ++LEL +E+ +E
Sbjct: 237 VRDVLHSADLVNLYLRQFQNPDRRKGEVFNIGGGRENSVSLLELIALCEEITGRKMESYK 296
Query: 293 VENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329
EN P D DI K KE GW+P+ R+ L +
Sbjct: 297 DENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEI 333
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-43
Identities = 98/315 (31%), Positives = 139/315 (44%), Gaps = 35/315 (11%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL--KKWIGHPRFELIRHDVT 88
R+L+ GG GFIGSHLVD L+E V V D + L +I R D+
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQ-VRVFDRSIPPYELPLGGVDYIKGDYEN--RADLE 57
Query: 89 EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL--AKRVGARILLTSTSE 146
L+ +D + HLA +P NP+ I+TNV T+ +L A +G I +S
Sbjct: 58 S-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASSGGT 116
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
VYG P P E+ PI S Y K E + Y +G+ + RI N YGP
Sbjct: 117 VYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISNPYGP 171
Query: 207 RMNIDDGR-VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-N 264
D + V+ + + LRGEP+ + G R + Y+ D+V+ L+ L+ + V N
Sbjct: 172 GQRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEALMALLRSKGLEEVFN 231
Query: 265 IGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP----------DISKAKELL 314
IG+ G ++ ELI EI+ V DIS+A+ L
Sbjct: 232 IGS-GIGY------SLAELIA---EIEKVTGRSVQVIYTPARTTDVPKIVLDISRARAEL 281
Query: 315 GWEPKVKLRDGLPLM 329
GW PK+ L DGL
Sbjct: 282 GWSPKISLEDGLEKT 296
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 2e-40
Identities = 104/310 (33%), Positives = 149/310 (48%), Gaps = 21/310 (6%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKN--EVIVADNY-FTGSKDNLKKWIGHPRFELIRHDV 87
RILVTGGAGFIGS+ V + + NE EVIV D + G+ +NL +PR+ ++ D+
Sbjct: 1 RILVTGGAGFIGSNFV-RYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDI 59
Query: 88 TEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGAR 138
+ L+ + D + H A + P I+TNV+GT +L ++ R
Sbjct: 60 GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119
Query: 139 ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIA 198
ST EVYGD + + P+ S Y K ++ L+ YHR +G+ I
Sbjct: 120 FHHISTDEVYGD----LEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALIT 175
Query: 199 RIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
R N YGP + +++ I AL G+PL V G Q R + YV D + ++E
Sbjct: 176 RCSNNYGPYQFPE--KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233
Query: 259 NTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGW 316
G NIG E T LE+ ET+ EL+ + I VE+ P R+ D SK K LGW
Sbjct: 234 RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGW 293
Query: 317 EPKVKLRDGL 326
PK +GL
Sbjct: 294 APKYTFEEGL 303
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 7e-39
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 45/326 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
++LVTGGAG+IGSH V +L+E +V+V DN G ++ L I R E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDR 58
Query: 91 LLIE-------VDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVGA 137
++ +D + H A K P+K NV+GTLN+L + G
Sbjct: 59 AALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGV 112
Query: 138 -RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
+ +S++ VYG+P P E P+ + Y K + E ++ D + G+
Sbjct: 113 KNFVFSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYV 167
Query: 197 IARIFNTYGPRMNID---DGRVVSN---FIAQALRG--EPLTV------QKPGTQTRSFC 242
I R FN G + D ++ +N ++ Q G E L + GT R +
Sbjct: 168 ILRYFNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYI 227
Query: 243 YVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD 298
+V D+ D L +L G + N+G +++LE+ E +++ I ++
Sbjct: 228 HVVDLADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAG 287
Query: 299 DPRQRKPDISKAKELLGWEPKVKLRD 324
DP D SKA+E LGW+PK L D
Sbjct: 288 DPASLVADPSKAREELGWKPKRDLED 313
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-38
Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 47/333 (14%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN---YFTGS--KDNLKKWIGHPRFELIR 84
M+ILVTG AGFIG H+ +L+E +EV+ DN Y+ + L+ F+ ++
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59
Query: 85 HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137
D+ + + E D + HLA A + NP + +N++G LN+L L + G
Sbjct: 60 GDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119
Query: 138 R-ILLTSTSEVYGDPLIHPQPETYWGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
+ ++ S+S VYG L P + V+ PI S Y K+ E + Y +GI
Sbjct: 120 KHLVYASSSSVYG--LNTKMPFSEDDRVDHPI---SLYAATKKANELMAHTYSHLYGIPT 174
Query: 196 RIARIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252
R F YGP GR + F L G+P+ V G +R F Y+ D+V+G++
Sbjct: 175 TGLRFFTVYGPW-----GRPDMALFLFTKAILEGKPIDVFNDGNMSRDFTYIDDIVEGVV 229
Query: 253 RLM----------EGENTGP---------VNIGNPGEFTMLELAETVKELINPGIEIKMV 293
R + + E P NIGN +++ E +++ + + +
Sbjct: 230 RALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYL 289
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
D + DISK + LLG++PK L +G+
Sbjct: 290 PMQKGDVPETYADISKLQRLLGYKPKTSLEEGV 322
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-38
Identities = 102/320 (31%), Positives = 145/320 (45%), Gaps = 34/320 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVAD--NYFTGSKDNLKKWIGHPRFELIRHD 86
M+ILVTGGAGFIGS+ V ++ + V+ D Y G+ +NL PR+ ++ D
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGD 59
Query: 87 VTEPLLIE-------VDQIYHLACPAS---PIFYKYNPVKTIKTNVIGTLNMLGLAKR-- 134
+ + L++ D + H A + I P I+TNV+GT +L A++
Sbjct: 60 ICDRELVDRLFKEYQPDAVVHFAAESHVDRSI---DGPAPFIQTNVVGTYTLLEAARKYW 116
Query: 135 VGARILLTSTSEVYGD-PLIHPQ-PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 192
R ST EVYGD L ET NP S Y K ++ L+ Y R +G
Sbjct: 117 GKFRFHHISTDEVYGDLGLDDDAFTET--TPYNP---SSPYSASKAASDLLVRAYVRTYG 171
Query: 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252
+ I R N YGP + +++ I AL G+PL V G Q R + YV D +
Sbjct: 172 LPATITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAID 229
Query: 253 RLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIE-----IKMVENTPDDPRQRKPD 306
++ G NIG E T LE+ +T+ EL+ I VE+ P R+ D
Sbjct: 230 LVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAID 289
Query: 307 ISKAKELLGWEPKVKLRDGL 326
SK K LGW P+ GL
Sbjct: 290 ASKIKRELGWRPQETFETGL 309
|
Length = 340 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 9e-38
Identities = 99/349 (28%), Positives = 160/349 (45%), Gaps = 50/349 (14%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
++L+ G GFIG HL +++E EV D D L + HPR D+T
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57
Query: 89 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
E + + D I L A+P Y P++ + + L ++ A + G ++ S
Sbjct: 58 NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117
Query: 144 TSEVYG---DPLIHPQ--PETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
TSEVYG D P+ P Y PI R Y K++ + +++ Y + G+ +
Sbjct: 118 TSEVYGMCPDEEFDPEASPLVY----GPINKPRWIYACSKQLMDRVIWAYGMEEGLNFTL 173
Query: 198 ARIFNTYGPRMNIDD--------GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249
R FN GP + D RVV+ F+ +RGEP+++ G+Q R+F + D +D
Sbjct: 174 FRPFNWIGPGL--DSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGID 231
Query: 250 GLIRLMEGEN---TGPV-NIGNPG-EFTMLELAETVKELIN--PG-----IEIKMVENTP 297
L++++E ++ +G + NIGNP ++ ELA + EL P ++K+VE T
Sbjct: 232 ALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTS 291
Query: 298 D--------DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338
D + R P I + LGW PK + D L + E +R +
Sbjct: 292 GAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340
|
Length = 347 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 9e-37
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 51/335 (15%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
M++LVTGGAG+IGSH V +L++ +EV+V DN G K L K + D+
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLD 55
Query: 89 EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 136
LL V D + H A NP+K NV+GTLN++ + G
Sbjct: 56 RALLTAVFEENKIDAVVHFAA------SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109
Query: 137 AR-ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
+ + +ST+ VYG+P P ET P+ + Y K ++E ++ D + + ++
Sbjct: 110 VKKFIFSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKV 164
Query: 196 RIARIFNTYGPRMNIDDGRVVSN------FIAQALRG--EPLTV------QKPGTQTRSF 241
I R FN G + G+ A+A G + L + K GT R +
Sbjct: 165 VILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDY 224
Query: 242 CYVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP 297
+V D+ D L L EG + N+G+ F++LE+ E K++ I +++
Sbjct: 225 IHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRA 284
Query: 298 DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332
DP D SKA+++LGW+P D L + +D
Sbjct: 285 GDPAILVADSSKARQILGWQPT---YDDLEDIIKD 316
|
Length = 329 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-36
Identities = 105/349 (30%), Positives = 159/349 (45%), Gaps = 54/349 (15%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK----WIGHPRFEL--I 83
+ I + G GFIGSHL +KLM ++V+ D Y K L+ W G +F I
Sbjct: 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74
Query: 84 RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 142
+HD LI++ D +LA +P Y P+ TI +N I L ++ R++
Sbjct: 75 KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134
Query: 143 STSEVYGD------PLIHP---QPETY----------WGNVNPIGVRSCYDEGKRVAETL 183
ST EVYG P HP P Y +G++ R Y K++ E L
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEK--QRWSYACAKQLIERL 192
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDG---------RVVSNFIAQALRGEPLTVQKP 234
++ ++G++ I R FN GPRM+ G RV++ F LR EPL +
Sbjct: 193 IYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDG 252
Query: 235 GTQTRSFCYVSDMVDGLIRLMEG---ENTGPVNIGNP-GEFTMLELAETVKELI-----N 285
G R+F Y+ D ++ ++ ++E N N+GNP E T+ +LAE + E+
Sbjct: 253 GQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGE 312
Query: 286 PGIEIKMVENTP--------DDPRQRKPDISKAKELLGWEPKVKLRDGL 326
P +E V+ + DD +R PD++ + LGW PK L D L
Sbjct: 313 PALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLL 361
|
Length = 386 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 7e-36
Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 40/331 (12%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDVT 88
+ILVTGGAG+IGSH V +L+E+ EV++ DN GS++ L + I F + D+
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGH-EVVILDNLSNGSREALPRGERITPVTF--VEGDLR 57
Query: 89 EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 140
+ L+ ++D + H A + P+K + NV+GTLN+L ++ G + +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFI 117
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR-QHGIQIRIAR 199
+S++ VYG+P P E P+G + Y K ++E ++ D + I R
Sbjct: 118 FSSSAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILR 172
Query: 200 IFNTYGPRMNIDDGRVVSN------FIAQALRG--EPLTV------QKPGTQTRSFCYVS 245
FN G + D G + Q G + LT+ GT R + +V
Sbjct: 173 YFNVAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVM 232
Query: 246 DMVDGLIRLME----GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR 301
D+ D + +E G + N+G F++LE+ E K++ +++ P DP
Sbjct: 233 DLADAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPA 292
Query: 302 QRKPDISKAKELLGWEPKVKLRDGLPLMEED 332
D SK + LGW+PK L + +D
Sbjct: 293 SLVADASKIRRELGWQPK---YTDLEEIIKD 320
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-35
Identities = 89/337 (26%), Positives = 127/337 (37%), Gaps = 55/337 (16%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-----PRFELIRH 85
R L+TG G GS+L + L+E EV + S + I H R L
Sbjct: 1 RALITGITGQDGSYLAEFLLEK-GYEVHGIV-RRSSSFNT--DRIDHLYINKDRITLHYG 56
Query: 86 DVTEPL-LIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVG 136
D+T+ L D+IYHLA + +P T + N +GTLN+L + +
Sbjct: 57 DLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLD 116
Query: 137 ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
AR S+SE YG PQ ET P RS Y K A+ + +Y +G+
Sbjct: 117 ARFYQASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAV 171
Query: 197 IARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT----------RSFCYVSD 246
R+FN GPR V Q R K G Q R + D
Sbjct: 172 NGRLFNHEGPRRGETF--VTRKITRQVAR------IKAGLQPVLKLGNLDAKRDWGDARD 223
Query: 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETV-KELINPGIEIKMVENTPDDPRQRKP 305
V+ L++ I ++ E E +E G + DPR +P
Sbjct: 224 YVEAYWLLLQQGEPDDYVIATGETHSVREFVELAFEESGLTGDIEVEI-----DPRYFRP 278
Query: 306 --------DISKAKELLGWEPKVKLRDGLPLMEEDFR 334
D SKA+E LGW+P+V + + M +
Sbjct: 279 TEVDLLLGDPSKAREELGWKPEVSFEELVREMLDADL 315
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 7e-31
Identities = 89/312 (28%), Positives = 140/312 (44%), Gaps = 20/312 (6%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD---NYFTGSKDNLKKWIGHPRFELI 83
+RI +TG GFI SH+ +L E + +I +D N ++ +L
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASDWKKNEHMSEDMFCHEFH---LVDLR 74
Query: 84 RHDVTEPLLIEVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 141
+ + VD +++LA + F + N + N + + NML A+ G R
Sbjct: 75 VMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY 134
Query: 142 TSTSEVYGDPLIHPQPETYWG----NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
S++ +Y + Q ET + P + Y K E L Y + GI+ RI
Sbjct: 135 ASSACIYPE---FKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRI 191
Query: 198 ARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRL 254
R N YGP GR + F +AL + + G QTRSF ++ + V+G++RL
Sbjct: 192 GRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRL 251
Query: 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314
+ + PVNIG+ +M E+AE N + IK + P+ R R D + KE L
Sbjct: 252 TKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPG-PEGVRGRNSDNTLIKEKL 310
Query: 315 GWEPKVKLRDGL 326
GW P ++L+DGL
Sbjct: 311 GWAPTMRLKDGL 322
|
Length = 370 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-30
Identities = 83/309 (26%), Positives = 130/309 (42%), Gaps = 30/309 (9%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
+ILVTG G +GS +V L V+ F SK+ +L +
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV-----FRTSKE----------LDLTDQEAVRA 45
Query: 91 LLIEV--DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGARILLT-STSE 146
+ D + HLA I P ++ N++ N++ A R G + L+ +S
Sbjct: 46 FFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSSC 105
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF-NTYG 205
+Y D P E+ P Y KR L Y +Q+G I+ + N YG
Sbjct: 106 IYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY-ISVMPTNLYG 164
Query: 206 PRMNID--DGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
P N D + V+ I A+ G+ +TV GT R F Y D+ ++ L+E
Sbjct: 165 PHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRREFLYSDDLARAIVFLLENY 224
Query: 259 NT-GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWE 317
+ VN+G+ E ++ ELAE + E++ EI + PD ++ D+SK + LGW
Sbjct: 225 DEPIIVNVGSGVEISIRELAEAIAEVVGFKGEIVFDTSKPDGQPRKLLDVSKLRA-LGWF 283
Query: 318 PKVKLRDGL 326
P L G+
Sbjct: 284 PFTPLEQGI 292
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 8e-28
Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 58/338 (17%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-- 88
R+L+ G GFIG+HL ++L+ ++ EV D GS D + +++GHPRF + D++
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEVYGLD---IGS-DAISRFLGHPRFHFVEGDISIH 372
Query: 89 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 373 SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPST 432
Query: 145 SEVYG-----------DPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHG 192
SEVYG LI V PI R Y K++ + +++ Y + G
Sbjct: 433 SEVYGMCTDKYFDEDTSNLI----------VGPINKQRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 193 IQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246
++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D
Sbjct: 483 LRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRD 542
Query: 247 MVDGLIRLMEGEN---TGP-VNIGNP-GEFTMLELAETVKELIN---------PGIEIKM 292
++ L R++E ++ G +NIGNP E ++ ELAE + P ++
Sbjct: 543 GIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRV 602
Query: 293 VENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 324
VE++ D RKP I A+ LL WEPK+ +++
Sbjct: 603 VESSSYYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQE 640
|
Length = 660 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 96/318 (30%), Positives = 149/318 (46%), Gaps = 37/318 (11%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVAD--NYFTGSKDNLKKWIGHPRFELIRHDVT 88
IL+TG AGFI SH+ ++L+ N + +++V D +Y + K NL P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67
Query: 89 EP-----LLI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 139
LLI +D I H A N + K N+ GT +L K G R
Sbjct: 68 SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNV--------NPIGVRSCYDEGKRVAETLMFDYHRQH 191
+ ST EVYG+ + GN NP Y K AE L+ Y R +
Sbjct: 128 IHVSTDEVYGE----TDEDADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSY 177
Query: 192 GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
G+ + R N YGP N +++ FI A++G+PL + G+ RS+ Y D+ +
Sbjct: 178 GLPVITTRGNNVYGP--NQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAF 235
Query: 252 -IRLMEGENTGPVNIGNPGEFTMLELAETVKELIN--PGIEIKMVENTPDDPRQRKPDIS 308
+ L +GE NIG E ++++A+ + +L P IK VEN P + ++ D
Sbjct: 236 EVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQ 295
Query: 309 KAKELLGWEPKVKLRDGL 326
K K+ LGW+ + +GL
Sbjct: 296 KLKK-LGWQERTSWEEGL 312
|
Length = 668 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 88/315 (27%), Positives = 137/315 (43%), Gaps = 45/315 (14%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKK-----WIGHPRF-ELIR 84
I+VTGGAGFIGS+LV L E +++V DN G K NL +I F + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 85 HDVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
E IE I+H AC + + + N T +L R + S
Sbjct: 62 KG-DENFKIEA--IFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQHGIQ--IRIA-- 198
++ VYG+ + + N+ P+ V Y K L+FD + R+HG + ++
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNV---YGYSK-----LLFDQWARRHGKEVLSQVVGL 167
Query: 199 RIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTV------QKPGTQTRSFCYVSDMVD 249
R FN YGPR GR VV + Q GE + + G Q R F YV D+V
Sbjct: 168 RYFNVYGPREY-HKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVKDVVK 226
Query: 250 GLIRLME-GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQR----- 303
+ +E +G N+G + +LA + + ++I+ ++ P+D R +
Sbjct: 227 VNLFFLENPSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEYIDF-PEDLRGKYQSFT 285
Query: 304 KPDISKAKELLGWEP 318
+ DISK + G+
Sbjct: 286 EADISKLRA-AGYTK 299
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-25
Identities = 78/328 (23%), Positives = 129/328 (39%), Gaps = 58/328 (17%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIGHPRFELIRHDVTEP 90
I+VTGGAGFIGS+LV L E +++V DN G K NL +I + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLAD-------LVIADYIDKE 53
Query: 91 LLIE---------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140
++ ++ I+H AC + + + ++ N + +L G +
Sbjct: 54 DFLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFI 110
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD-----YHRQHGIQI 195
S++ YGD + + Y K +FD +
Sbjct: 111 YASSAATYGD-----GEAGFREGRELERPLNVYGYSK-----FLFDQYVRRRVLPEALSA 160
Query: 196 RIA--RIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTVQ--------KPGTQTRSFC 242
++ R FN YGPR G+ V + Q G V+ K G Q R F
Sbjct: 161 QVVGLRYFNVYGPREY-HKGKMASVAFHLFNQIKAGG--NVKLFKSSEGFKDGEQLRDFV 217
Query: 243 YVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ 302
YV D+VD + L+E +G N+G + +LA+ V + + +I+ + P+ R
Sbjct: 218 YVKDVVDVNLWLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPM-PEALRG 276
Query: 303 R-----KPDISKAKELLGWEPKVKLRDG 325
R + DI+K + + P L +G
Sbjct: 277 RYQYFTQADITKLRAAGYYGPFTTLEEG 304
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 91/327 (27%), Positives = 137/327 (41%), Gaps = 36/327 (11%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTE 89
+IL+TGGAGFIGS LV ++ + V+V D + G+ +L RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 90 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 132
+ D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 133 KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 192
K+ R ST EVYGD +H + ++ P S Y K ++ L+ + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252
+ I N YGP + +++ I AL G+PL V G Q R + YV D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALY 237
Query: 253 RLMEGENTGPV-NIGNPGEFTMLELAETVKELINP-------GIE-----IKMVENTPDD 299
+ G NIG E L++ ET+ EL+ G+ I V + P
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGH 297
Query: 300 PRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D SK LGW P+ G+
Sbjct: 298 DLRYAIDASKIARELGWLPQETFESGM 324
|
Length = 355 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 91/332 (27%), Positives = 147/332 (44%), Gaps = 40/332 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVT 88
M+ILVTGGAGFIGS +V ++ N ++ V+ D + G+ ++L R+ D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 89 EPLLIEVDQIY---------HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA------- 132
+ E+D+I+ HLA + P I+TN++GT +L A
Sbjct: 61 D--RAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118
Query: 133 ---KRVGARILLTSTSEVYGDPLIHP------QPETYWGNVNPIGVRSCYDEGKRVAETL 183
K+ R ST EVYGD L HP + + S Y K ++ L
Sbjct: 119 DEDKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243
+ + R +G+ + N YGP + +++ I AL G+PL + G Q R + Y
Sbjct: 178 VRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLY 235
Query: 244 VSDMVDGLIRLM-EGENTGPVNIGNPGEFTMLELAETVKELINPGI--------EIKMVE 294
V D L +++ EG+ NIG E L++ T+ +L++ + +I V
Sbjct: 236 VEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVA 295
Query: 295 NTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ P R+ D SK LGW+P+ G+
Sbjct: 296 DRPGHDRRYAIDASKISRELGWKPQETFESGI 327
|
Length = 352 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-21
Identities = 98/347 (28%), Positives = 141/347 (40%), Gaps = 71/347 (20%)
Query: 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA------DNYF-TGSKDNLKK-WIG 76
F+Q R+LVTG GF GS L L E + + N F + DN G
Sbjct: 1 FWQ-GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRG 59
Query: 77 HPR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA 132
R +R + E E + ++HLA A P+ YK +PV+T +TNV+GT+N+L
Sbjct: 60 DIRDLNALREAIRE---YEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAI 113
Query: 133 KRVG-ARILLTSTSE-VYGDPLIHPQPETYWGNV--NPIGVRSCYDEGKRVAETLMFDYH 188
+ G + ++ TS+ Y + E WG +P+G Y K AE ++ Y
Sbjct: 114 RETGSVKAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYR 167
Query: 189 R---------QHGIQIRIARIFNTY-GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238
+HGI I AR N G D R+V + I GE + ++ P
Sbjct: 168 NSFFNPENYGKHGIAIASARAGNVIGGGDWAED--RIVPDCIRAFEAGERVIIRNPNA-I 224
Query: 239 RSFCYVSDMVDGLIRLME------GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM 292
R + +V + + G + L E E N G E A TV EL+ M
Sbjct: 225 RPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDD-----EDAVTVLELVE-----AM 274
Query: 293 VENTPDDPRQ-----RKP--------DISKAKELLGWEPKVKLRDGL 326
+D R P D SKAK +LGW P+ L + L
Sbjct: 275 ARYWGEDARWDLDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETL 321
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-20
Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 37/311 (11%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M++L+TGGAG IGSHL++ L+E ++V+V DN+ TG +++L HP ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLER-GHQVVVIDNFATGRREHLPD---HPNLTVVEGSIAD 56
Query: 90 PLLIEV-------DQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA-R 138
L++ D + H A A+ YK +P + TNV+G N++ AK+ G R
Sbjct: 57 KALVDKLFGDFKPDAVVHTA--AA---YK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKR 110
Query: 139 ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIA 198
++ T+ YG + QP P G S Y K E Y G+
Sbjct: 111 LIYFQTALCYGLKPMQ-QPIRLDHPRAPPG--SSYAISKTAGE----YYLELSGVDFVTF 163
Query: 199 RIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
R+ N GPR I + F + G+ V R F +V D+ + + ++G
Sbjct: 164 RLANVTGPRNVIGP---LPTFYQRLKAGKKCFVTD---TRRDFVFVKDLARVVDKALDGI 217
Query: 259 N-TGPVNIGNPGEFTMLEL-AETVKELINPGI-EIKMVENTPDDPRQRKPDISKAKELLG 315
G + + + ++ EL V+ L P E+++VE PDD D S+ + G
Sbjct: 218 RGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPSILLDPSRTFQDFG 277
Query: 316 WEPKVKLRDGL 326
W+ L + +
Sbjct: 278 WKEFTPLSETV 288
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 8e-20
Identities = 69/262 (26%), Positives = 108/262 (41%), Gaps = 30/262 (11%)
Query: 32 ILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
ILVTG GF+GS+LV L+ + +V GS L + E++ D+T+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRALVRS----GSDAVL---LDGLPVEVVEGDLTDA 53
Query: 91 LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144
+ D+++HLA S + K + +TNV GT N+L A G R++ TS+
Sbjct: 54 ASLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSS 111
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI---ARIF 201
G P ET N + Y K +AE + + + G+ + I + +F
Sbjct: 112 IAALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAELEVLEAAAE-GLDVVIVNPSAVF 168
Query: 202 NTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261
G V +++ L P PG SF V D+ +G I ME G
Sbjct: 169 GPGDEGPTS-TGLDVLDYLNGKLPAYP-----PGGT--SFVDVRDVAEGHIAAMEKGRRG 220
Query: 262 PVNIGNPGEFTMLELAETVKEL 283
I + +L ET+ E+
Sbjct: 221 ERYILGGENLSFKQLFETLAEI 242
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 91/330 (27%), Positives = 141/330 (42%), Gaps = 53/330 (16%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIV--ADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
ILVTGGAG+IGSH V +L+ V++ DN + +K+ G L+ H V
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVD 66
Query: 89 -------EPLLIE--VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLA 132
E + D + H A A P+ Y N N++GT+N+L +
Sbjct: 67 LRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINLLEVM 119
Query: 133 KRVGARILLTSTS-EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR-Q 190
+ G + L+ S+S VYG P P E + P+ + Y K E + D H
Sbjct: 120 AKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICRDIHASD 174
Query: 191 HGIQIRIARIFNTYG--PRMNI-DDGRVVSN----FIAQ-AL-RGEPLTV------QKPG 235
+I + R FN G P I +D + + N ++ Q A+ R LTV K G
Sbjct: 175 PEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDG 234
Query: 236 TQTRSFCYVSDMVDG----LIRLMEGENTG--PVNIGNPGEFTMLELAETVKELINPGIE 289
T R + +V D+ DG L +L + G N+G ++LE+ ++ I
Sbjct: 235 TGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIP 294
Query: 290 IKMVENTPDDPRQRKPDISKAKELLGWEPK 319
+K+ P D + KA++ LGW+ K
Sbjct: 295 LKLAPRRPGDAEEVYASTEKAEKELGWKAK 324
|
Length = 352 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-18
Identities = 82/296 (27%), Positives = 116/296 (39%), Gaps = 60/296 (20%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG------------SKDNLKKWI 75
ILVTGGAG IGS LV ++++ ++IV D D L+ I
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60
Query: 76 GHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNM 128
G R E +R E D ++H A K NP + IKTNV+GT N+
Sbjct: 61 GDVRDKERLRRAFKE---RGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNV 111
Query: 129 LGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187
+ A G + + ST + VNP+ V KRVAE L+
Sbjct: 112 IDAAIENGVEKFVCISTDKA----------------VNPVNV---MGATKRVAEKLLLAK 152
Query: 188 HRQHG-IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246
+ + R N G R G V+ F Q +G PLTV P TR F + +
Sbjct: 153 NEYSSSTKFSTVRFGNVLGSR-----GSVLPLFKKQIKKGGPLTVTDPDM-TRFFMTIPE 206
Query: 247 MVDGLIRLME-GENTGPVNIGNPGEFTMLELAETVKELINP----GIEIKMVENTP 297
VD +++ G+ G + +L+LAE + EL+ I I P
Sbjct: 207 AVDLVLQACILGDGGGIFLLDMGPPVKILDLAEALIELLGYEPYEDIPIFFTGLRP 262
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 1e-18
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 38/332 (11%)
Query: 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---------KK 73
+K + R L+TG AGFIGS L+++L+ + VI DN+ TG + NL ++
Sbjct: 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQ 67
Query: 74 WIGHPRFELIRHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 128
W RF I+ D+ + VD + H A S +P+ T N+ G LNM
Sbjct: 68 W---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNM 124
Query: 129 LGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187
L A+ + ++S YGD P+ E G P+ S Y K V E +
Sbjct: 125 LTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGR--PL---SPYAVTKYVNELYADVF 179
Query: 188 HRQHGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245
R + R FN +G R N + V+ +I L+ EP+ + G+ +R FCY+
Sbjct: 180 ARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIE 239
Query: 246 DMVDG-LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDP---- 300
+++ L+ + + N L E + LI G+ + E + +P
Sbjct: 240 NVIQANLLSATTNDLASKNKVYNVAVGDRTSLNE-LYYLIRDGLNLWRNEQSRAEPIYKD 298
Query: 301 ------RQRKPDISKAKELLGWEPKVKLRDGL 326
+ + DI+K K L +EP+ +++GL
Sbjct: 299 FRDGDVKHSQADITKIKTFLSYEPEFDIKEGL 330
|
Length = 348 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-18
Identities = 87/316 (27%), Positives = 125/316 (39%), Gaps = 48/316 (15%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL 92
V G G +GS +V KL FT + EL D+T
Sbjct: 1 FVAGHRGLVGSAIVRKLEALG----------FT-------NLVLRTHKEL---DLTRQ-- 38
Query: 93 IEVDQIY---------HLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141
+V+ + A I Y P I+ N+ N++ A R G + LL
Sbjct: 39 ADVEAFFAKEKPTYVILAAAKVGGIHANMTY-PADFIRENLQIQTNVIDAAYRHGVKKLL 97
Query: 142 T-STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
+S +Y P PET P Y K + Y Q+G
Sbjct: 98 FLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMP 157
Query: 201 FNTYGPRMN--IDDGRVVSNFIAQ----ALRGEPLTVQ-KPGTQTRSFCYVSDMVDGLIR 253
N YGP N ++ V+ I + G P V G+ R F +V D+ D ++
Sbjct: 158 TNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVF 217
Query: 254 LMEG-ENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT--PDDPRQRKPDISKA 310
LM VN+G+ E T+ ELAE VKE++ G E ++V +T PD ++ D SK
Sbjct: 218 LMRRYSGAEHVNVGSGDEVTIKELAELVKEVV--GFEGELVWDTSKPDGTPRKLMDSSKL 275
Query: 311 KELLGWEPKVKLRDGL 326
+ LGW+PK L+DGL
Sbjct: 276 RS-LGWDPKFSLKDGL 290
|
Length = 306 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 9e-18
Identities = 81/314 (25%), Positives = 122/314 (38%), Gaps = 69/314 (21%)
Query: 11 TKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-------- 62
+PP +LVTGG G IGS L ++++ E+I+
Sbjct: 233 GRPPVALDTELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI 291
Query: 63 --YFTGSKDNLKKW--IGHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------ 111
LK IG R + + + +VD ++H A K
Sbjct: 292 DMELREKFPELKLRFYIGDVRDRDRVERAMEG---HKVDIVFHAAA------LKHVPLVE 342
Query: 112 YNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170
YNP + IKTNV+GT N+ A + G + +L ST + VNP V
Sbjct: 343 YNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA----------------VNPTNV- 385
Query: 171 SCYDEGKRVAETLMFDYHRQH-GIQIRIA--RIFNTYGPRMNIDDGRVVSNFIAQALRGE 227
KR+AE L +R G R R N G R G V+ F Q G
Sbjct: 386 --MGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGG 438
Query: 228 PLTVQKPGTQTRSFCYVSDMVDGLIR---LMEGENTGPVNIGNPGE-FTMLELAETVKEL 283
PLTV P TR F + + V +++ + +G G + + + GE +++LA+ + EL
Sbjct: 439 PLTVTDP-DMTRFFMTIPEAVQLVLQAGAIAKG---GEIFVLDMGEPVKIIDLAKAMIEL 494
Query: 284 IN----PGIEIKMV 293
I IK++
Sbjct: 495 AGQTPPGDIAIKII 508
|
Length = 588 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 90/356 (25%), Positives = 139/356 (39%), Gaps = 67/356 (18%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEV--IVADNY-FTGSKDNLKK--WIGHPRFELIRH 85
L+TG G GS+L +L+ + EV I + F + +L + + PR L
Sbjct: 4 VALITGITGQDGSYLA-ELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62
Query: 86 DVTEP-----LLIEV--DQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 136
D+T+ +L EV D+IY+LA + + ++ P T + IGTL +L + +G
Sbjct: 63 DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGE 121
Query: 137 --ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQ 194
R STSE+YG PQ ET P RS Y K A + +Y +G+
Sbjct: 122 KKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLF 176
Query: 195 IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT----------RSFCYV 244
+FN P V R K G Q R + +
Sbjct: 177 ACNGILFNHESPLRGET--FVTRKITRAVAR------IKLGLQDKLYLGNLDAKRDWGHA 228
Query: 245 SDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD------ 298
D V+ + +++ E I ++ E E E++ GI+++ D
Sbjct: 229 KDYVEAMWLMLQQEEPDDYVIATGETHSVREFVELAFEMV--GIDLEWEGTGVDEKGVDA 286
Query: 299 ---------DPRQRKP--------DISKAKELLGWEPKVKLRDGLPLM-EEDFRSR 336
DPR +P D +KAKE LGW P+V L + + M E D +
Sbjct: 287 KTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342
|
Length = 345 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-17
Identities = 76/318 (23%), Positives = 121/318 (38%), Gaps = 54/318 (16%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M+IL+TG G +G+ L L EVI D ++ D
Sbjct: 1 MKILITGANGQLGTELRRALPGEF--EVIATD---------------RAELDITDPDAVL 43
Query: 90 PLLIEV--DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145
++ E D + + A A K P N G N+ A VGAR++ ST
Sbjct: 44 EVIRETRPDVVINAA--AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
V+ P ET NP+ V Y K E + +H I +R + ++ YG
Sbjct: 102 YVFDGEKGGPYKET--DTPNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYGEYG 155
Query: 206 PRMNIDDGRVVSNFIAQALR----GEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261
+NF+ LR G+ L V Q S Y D+ D ++ L+E E G
Sbjct: 156 -----------NNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEKEKEG 202
Query: 262 PV-NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ-RKP-----DISKAKELL 314
V ++ N GE + E A+ + E E+ + + P ++P D K ++
Sbjct: 203 GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAF 262
Query: 315 GWEPKVKLRDGLPLMEED 332
G + R+ L + ++
Sbjct: 263 GLSLP-EWREALKALLDE 279
|
Length = 281 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-16
Identities = 64/286 (22%), Positives = 93/286 (32%), Gaps = 61/286 (21%)
Query: 30 MRILVTGGAGFIGSHLVDKLMEN-----------------EKNEVIVADNYFTGSKDNLK 72
M+IL+ GG FIG LV++L+ E E IV D +D L+
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHDVTVFNRGRTKPDLPEGVEHIVGDRN---DRDALE 57
Query: 73 KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA 132
+ +G F+++ VD I Y P + L
Sbjct: 58 ELLGGEDFDVV-----------VDTI------------AYTPRQV--------ERALDAF 86
Query: 133 KRVGARILLTSTSEVYGDPLIHPQPETYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQ 190
K + + S++ VY P T + Y GKR AE ++ +
Sbjct: 87 KGRVKQYIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAA-- 144
Query: 191 HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250
I R YGP + F + RG P+ V G F +V D+
Sbjct: 145 -AFPYTIVRPPYIYGPGDYTGRL---AYFFDRLARGRPILVPGDGHSLVQFIHVKDLARA 200
Query: 251 LIRLMEGE--NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVE 294
L+ G NI T EL E + + EI VE
Sbjct: 201 LLGAAGNPKAIGGIFNITGDEAVTWDELLEACAKALGKEAEIVHVE 246
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 54/241 (22%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M+IL+TG GFIG +L+ +L E + +++ D EL +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDDDIFFYD-------------RESDESEL------D 41
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 147
L D I+HLA P + + NV T +L R G + ILL+S+ +
Sbjct: 42 DFLQGADFIFHLAGVNRP----KDEAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQA 97
Query: 148 YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG-- 205
D NP Y + K AE L+ +Y R+ G + I R+ N +G
Sbjct: 98 ALD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFGKW 137
Query: 206 --PRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
P N V+ F R P+ + P + Y+ D+VD LI+L+EG T
Sbjct: 138 CRPNYN----SAVATFCYNIARDLPIQINDPAA-ELTLVYIDDVVDELIQLLEGAPTYSG 192
Query: 264 N 264
Sbjct: 193 G 193
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 71/279 (25%), Positives = 105/279 (37%), Gaps = 32/279 (11%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
+LVTGG+GF G LV +L+E V D G L W HP E ++ D+T+
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA--LSAW-QHPNIEFLKGDITDR 57
Query: 91 LLIE-----VDQIYHLACPASPIFYKYNPVKTI-KTNVIGTLNMLGLAKRVGARILL-TS 143
+E D ++H A P + NV GT N+L +R G + + TS
Sbjct: 58 NDVEQALSGADCVFHTAAIVPL----AGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113
Query: 144 TSEV-YGDPLIHPQPETYWGNVNPIGVRS--CYDEGKRVAETLMFDYHRQHGIQIRIARI 200
+S V +G IH ET P Y E K +AE ++ + + + + R
Sbjct: 114 SSSVIFGGQNIHNGDETL-----PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168
Query: 201 FNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
+GP D +V A +G V G F YV ++ I
Sbjct: 169 AGIFGPG----DQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALVK 224
Query: 261 G------PVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
G I + M EL V + + G K+
Sbjct: 225 GKTISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIR 263
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 3e-15
Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 84/295 (28%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADN------------YFTGSKDNLKKWIGHPR 79
+LVTGG G IGS L ++++ ++I+ + L+ +IG
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIG--- 57
Query: 80 FELIRHDVTEPLLIE-------VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTL 126
DV + +E VD ++H A K YNP++ IKTNV+GT
Sbjct: 58 ------DVRDRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTE 105
Query: 127 NMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185
N+ A G + +L ST + VNP V KR+AE L
Sbjct: 106 NVAEAAIENGVEKFVLISTDKA----------------VNPTNV---MGATKRLAEKLFQ 146
Query: 186 DYHRQHGI-QIRIA--RIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242
+R+ G + R + R N G R G V+ F Q G P+TV P TR F
Sbjct: 147 AANRESGSGKTRFSVVRFGNVLGSR-----GSVIPLFKKQIANGGPVTVTHP-DMTRFFM 200
Query: 243 YVSDMVDGLIR---LMEGENTGPV---NIGNPGEFTMLELAETVKELINPGIEIK 291
+ + V +++ + +G G + ++G P +++LA+ + IEIK
Sbjct: 201 TIPEAVQLVLQAGAMGKG---GEIFVLDMGPP--VKIVDLAKAMI----GDIEIK 246
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 8e-15
Identities = 85/329 (25%), Positives = 135/329 (41%), Gaps = 56/329 (17%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
M++L+TG +GF+G L ++L+ + NE +I+ D + K G PR I D+
Sbjct: 1 MKVLITGASGFVGQRLAERLLSDVPNERLILID------VVSPKAPSGAPRVTQIAGDLA 54
Query: 89 EPLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 140
P LIE D ++HLA S + + NV GT N+L ++ G R +
Sbjct: 55 VPALIEALANGRPDVVFHLAAIVSGGAEA-DFDLGYRVNVDGTRNLLEALRKNGPKPRFV 113
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRI 197
TS+ VYG PL P P T ++P S Y K + E L+ DY R+ G +R+
Sbjct: 114 FTSSLAVYGLPL--PNPVTDHTALDPA---SSYGAQKAMCELLLNDYSRRGFVDGRTLRL 168
Query: 198 ARIFNTYGPRMNIDDGRVVSNFIAQA-----LRGEPLTVQKPGTQ-TRSFCYV-SDMVDG 250
+ + GR N A A +R EPL ++ G Y +
Sbjct: 169 PTVC--------VRPGR--PNKAASAFASTIIR-EPLVGEEAGLPVAEQLRYWLKSVATA 217
Query: 251 LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK------MVENTPDDPRQRK 304
+ + G + T+ L+ TV E + I + ++ PD+ +R
Sbjct: 218 VANFVHAAELPAEKFGPRRDLTLPGLSVTVGEELRALIPVAGLPALMLITFEPDEEIKRI 277
Query: 305 P-------DISKAKELLGWEPKVKLRDGL 326
D ++A+ LG+ L GL
Sbjct: 278 VFGWPTRFDATRAQS-LGFVADSSLAAGL 305
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 42/314 (13%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS----KDNLKKWIGH----PRFEL 82
+LVTG GFI SH+V++L++ + T LK + R E
Sbjct: 1 LVLVTGATGFIASHIVEQLLKA--GYKVRG----TVRSLSKSAKLKALLKAAGYNDRLEF 54
Query: 83 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKR 134
+ D + L VD + H+ ASP + + I V GTLN+L AK
Sbjct: 55 VIVDDLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKA 111
Query: 135 VGA--RILLTSTSEVYGDPLIHPQPETY----WGNVNPIGVRS--CYDEGKRVAETLMFD 186
G+ R++LTS+ GDP + + W ++ Y K +AE ++
Sbjct: 112 AGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWE 171
Query: 187 YHRQHGIQIRIARIFNTY--GPRMNIDDGRVVSNFIAQ-ALRGEPLTVQKPGTQTRSFCY 243
+ +++ + + I Y GP + D+ + I + P +
Sbjct: 172 FVKENKPKFELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPF---GYVD 228
Query: 244 VSDMVDGLIRLME-GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVE-NTPDDPR 301
V D+ D +R +E E G I + G F+ E+A+ ++E P + N
Sbjct: 229 VRDVADAHVRALESPEAAGQRFIVSAGPFSFQEIADLLREEF-PQLTAPFPAPNPLMLSI 287
Query: 302 QRKPDISKAKELLG 315
K D K++ELLG
Sbjct: 288 LVKFDNRKSEELLG 301
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-13
Identities = 77/335 (22%), Positives = 121/335 (36%), Gaps = 62/335 (18%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTG AG +G L +L + + + D + P+ E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGL-------DRRRPPGSPPKVEYVRLDIRDPA 53
Query: 92 LI------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144
E D + HLA P + + + NV GT N+L G R+++TS+
Sbjct: 54 AADVFREREADAVVHLAFILDPP---RDGAERHRINVDGTQNVLDACAAAGVPRVVVTSS 110
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIARIFNT 203
VYG +P P T + Y K E L+ ++ R+H + + + R
Sbjct: 111 VAVYGAHPDNPAPLTEDAPLRGSP-EFAYSRDKAEVEQLLAEFRRRHPELNVTVLRPATI 169
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT-----QTRSFCYVSDMVDGLIRLMEGE 258
GP N L L V PG Q F + D+ L+ +
Sbjct: 170 LGPGT--------RNTTRDFLSPRRLPV--PGGFDPPFQ---FLHEDDVARALVLAVRAG 216
Query: 259 NTGPVNIGNPGEFTMLELAETVKELINPGIEI-----------KMVENTPDDPRQ----- 302
TG N+ G + + L + + + + P P Q
Sbjct: 217 ATGIFNVAGDGPVPLSLVL---ALLGRRPVPLPSPLPAALAAARRLGLRPLPPEQLDFLQ 273
Query: 303 RKP--DISKAKELLGWEPKVKLRDGLPLMEEDFRS 335
P D ++A+ LGW+PK + L DFR
Sbjct: 274 YPPVMDTTRARVELGWQPKHTSAEVL----RDFRR 304
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-13
Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 54/278 (19%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-----PRFELIR 84
MR+LVTGG+G+IGSH +L++N ++V++ DN SK ++ I P F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN-LCNSKRSVLPVIERLGGKHPTF--VE 56
Query: 85 HDV-TEPLLIE------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLG 130
D+ E LL E +D + H A P+ Y N NV GTL ++
Sbjct: 57 GDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLIS 109
Query: 131 LAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRVAETLMFDYH 188
+ + ++ +S++ VYGD QP+ + P G +S Y + K + E ++ D
Sbjct: 110 AMRAANVKNLIFSSSATVYGD-----QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQ 164
Query: 189 R-QHGIQIRIARIFNTYGPR----MNIDDGRVVSN---FIAQAL--RGEPLTV------Q 232
+ Q I + R FN G M D + +N +IAQ R + L +
Sbjct: 165 KAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPT 224
Query: 233 KPGTQTRSFCYVSDMVDGLIRLMEGENTGP-VNIGNPG 269
+ GT R + +V D+ DG + ME P V+I N G
Sbjct: 225 EDGTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLG 262
|
Length = 338 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 86/329 (26%), Positives = 135/329 (41%), Gaps = 50/329 (15%)
Query: 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVADNYFT--GSKDNLKKWIGH 77
F ++LVTG GF GS L L+E + + N F ++ G
Sbjct: 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGD 60
Query: 78 PR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK 133
R +R + E + + ++HLA A P+ Y P++T +TNV+GT+N+L +
Sbjct: 61 IRDAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYAD-PLETFETNVMGTVNLLEAIR 114
Query: 134 RVG---ARILLTSTSEVYGDPLIHPQPETYWG--NVNPIGVRSCYDEGKRVAETLMFDYH 188
+G A + +T + + Y + E WG +P+G Y K AE ++ Y
Sbjct: 115 AIGSVKAVVNVT-SDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASYR 167
Query: 189 R-------QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
HGI+I AR N G +D R++ + I + + ++ P TR +
Sbjct: 168 SSFFGVANFHGIKIASARAGNVIGGGDWAED-RLIPDVIRAFSSNKIVIIRNP-DATRPW 225
Query: 242 CYVSDMVDGLIRLMEGENTGPVNIGNPGEF-TMLELAETVKELIN------PG----IEI 290
+V + + G + L E TG F V EL+ G E
Sbjct: 226 QHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWED 285
Query: 291 KMVENTPDDPRQRKPDISKAKELLGWEPK 319
N P + R K D SKA+ LLGW P+
Sbjct: 286 DSDLNHPHEARLLKLDSSKARTLLGWHPR 314
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 88/364 (24%), Positives = 128/364 (35%), Gaps = 76/364 (20%)
Query: 30 MRILVTGGAGFIG----SHLVDKLMENEKNEVIVADNYFTGSKDN--------------- 70
M++L+ GG G+ G HL + +EV + DN D
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKR-----GHEVCIVDNLVRRRIDVELGLESLTPIASIHE 55
Query: 71 ----LKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA----CPASPIFYKYNPV 115
K+ G E D + E D + H A P S I + +
Sbjct: 56 RLRAWKELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMI-DREHAN 113
Query: 116 KTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGNVN-------- 165
T NVIGTLN+L K ++ T YG P I PE Y +
Sbjct: 114 YTQHNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNI-DIPEGYITIEHNGRRDTLP 172
Query: 166 -PIGVRSCYDEGKRVAETLMFDYHRQHGIQI---RIARIFNTYGPRMNIDD--------- 212
P S Y K + + GI+I ++ T D+
Sbjct: 173 YPKQAGSWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYD 232
Query: 213 ---GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGN- 267
G V++ F QA G PLTV G QTR F + D V L + L G + N
Sbjct: 233 GVFGTVLNRFCVQAAIGHPLTVYGKGGQTRGFISIRDTVQCLELALENPAKAGEYRVFNQ 292
Query: 268 -PGEFTMLELAETVKEL---INPGIEIKMVENTPDDPRQRKPDISKAKEL-LGWEPKVKL 322
+F++ ELAE V E + ++++ + N + + + K L LG EP L
Sbjct: 293 FTEQFSVGELAEMVAEAGSKLGLDVKVEHLPNPRVEAEEHYYNAKNTKLLDLGLEPH-YL 351
Query: 323 RDGL 326
+ L
Sbjct: 352 SESL 355
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-12
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 33 LVTGGAGFIGSHLVDKLM-ENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP- 90
LVTGG GF+G H+V L+ E E EV V D F+ L+ + I DVT+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPEL--LEDFSKLQVITYIEGDVTDKQ 58
Query: 91 ----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTS 145
L D + H A +F K +K NV GT N+L + G R+L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 146 EV-----YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL--------MFDYHRQHG 192
EV YG P+++ T + + Y E K +AE L + + R +
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVLKANGSTLKNGGRLYT 173
Query: 193 IQIRIARIFNTYGPRM 208
+R A IF P +
Sbjct: 174 CALRPAGIFGEGDPFL 189
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 74/336 (22%), Positives = 118/336 (35%), Gaps = 74/336 (22%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
++LVTG GFIG LVDKL+ EV +A ++ EL D
Sbjct: 1 KVLVTGANGFIGRALVDKLLS-RGEEVRIA------VRNAENAEPSVVLAELPDIDSFTD 53
Query: 91 LLIEVDQIYHLAC------PASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILL 141
L + VD + HLA Y V N T + A R G + + L
Sbjct: 54 LFLGVDAVVHLAARVHVMNDQGADPLSDYRKV-----NTELTRRLARAAARQGVKRFVFL 108
Query: 142 TSTSEVYGDPLIH--------PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
S+ +V G+ + P P+ +G K AE + + G+
Sbjct: 109 -SSVKVNGEGTVGAPFDETDPPAPQDAYG------------RSKLEAERALLELGASDGM 155
Query: 194 QIRIARIFNTYGPRMNIDDGRVVSNF--IAQAL-RGEPLTVQKPGTQTRSFCYVSDMVDG 250
++ I R YGP + NF + + + RG PL + RS + ++VD
Sbjct: 156 EVVILRPPMVYGPGVR-------GNFARLMRLIDRGLPLPPGAVKNR-RSLVSLDNLVDA 207
Query: 251 LIRLMEGENTGPVN----IGNPGEFTMLELAETVKE--------LINPGIEIKMVENTPD 298
+ + N + + + EL + ++ L P ++
Sbjct: 208 IYLCI--SLPKAANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKLLG 265
Query: 299 DPR--QR-----KPDISKAKELLGWEPKVKLRDGLP 327
QR + D K + LGW P + L +GL
Sbjct: 266 KRAVIQRLFGSLQYDPEKTQNELGWRPPISLEEGLQ 301
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-11
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 43/276 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TG G +G LV +L V+VA + +L + E
Sbjct: 1 RILITGANGQLGRELVQQLSPEG--RVVVALT--------------RSQLDLTDPEALER 44
Query: 91 LL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148
LL I D + + A + +P K N + N+ A R GAR++ ST V+
Sbjct: 45 LLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVF 104
Query: 149 GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRM 208
P E NP+ V Y + K E + I +R + ++ G R
Sbjct: 105 DGEGKRPYRED--DATNPLNV---YGQSKLAGEQAVRAAGPNALI-VRTSWLYGGGGGR- 157
Query: 209 NIDDGRVVSNFIAQ----ALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT--GP 262
NF+ A RGE L V Q S Y D+ + L++ G
Sbjct: 158 ---------NFVRTMLRLAGRGEELRVVD--DQIGSPTYAKDLARVIAALLQRLARARGV 206
Query: 263 VNIGNPGEFTMLELAETV-KELINPGIEIKMVENTP 297
++ N G+ + E A+ + +E G+ + E P
Sbjct: 207 YHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKP 242
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-11
Identities = 80/310 (25%), Positives = 128/310 (41%), Gaps = 60/310 (19%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
+IL+TG G +G LV L E EVI G R L + D+T+P
Sbjct: 1 KILITGATGMLGRALVRLLKERGY-EVIG---------------TGRSRASLFKLDLTDP 44
Query: 91 L-LIEV------DQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
+ E D I + A C + P + NV+ N+ AK VG
Sbjct: 45 DAVEEAIRDYKPDVIINCAAYTRVDKCESDPE-------LAYRVNVLAPENLARAAKEVG 97
Query: 137 ARILLTSTSEVY-GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
AR++ ST V+ G P E NP+ V Y + K + E + + + ++ I +
Sbjct: 98 ARLIHISTDYVFDGKK--GPYKEE--DAPNPLNV---YGKSKLLGEVAVLNANPRYLI-L 149
Query: 196 RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
R + + YG N V + A + + V Q S Y +D+ D ++ L+
Sbjct: 150 RTSWL---YGELKN--GENFVEWMLRLAAERKEVNVVH--DQIGSPTYAADLADAILELI 202
Query: 256 E-GENTGPVNIGNPGEFTMLELAETVKELIN-PGIEIKMVENTPDDPRQRKP-----DIS 308
E TG ++ N G + E A+ + + + P +EIK + ++ R+P D S
Sbjct: 203 ERNSLTGIYHLSNSGPISKYEFAKLIADALGLPDVEIKPITSSEYPLPARRPANSSLDCS 262
Query: 309 KAKELLGWEP 318
K +EL G +P
Sbjct: 263 KLEELGGIKP 272
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 82/350 (23%), Positives = 131/350 (37%), Gaps = 76/350 (21%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
LV GG+GF+G HLV++L+ V V D T D R + D+T+P
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSS----SGRVQFHTGDLTDP 56
Query: 91 LLIE-------VDQIYHLACPAS----PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 139
+E + ++H A P ++Y K NV GT N++ ++ G +
Sbjct: 57 QDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--------KVNVQGTRNVIEACRKCGVKK 108
Query: 140 LL--TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG----I 193
L+ +S S V+ I E+ P + Y+E K +AE L+ +
Sbjct: 109 LVYTSSASVVFNGQDIINGDESL---PYPDKHQDAYNETKALAEKLVLKANDPESGLLTC 165
Query: 194 QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI- 252
+R A IF GP D ++V + A G+ G F YV ++ I
Sbjct: 166 ALRPAGIF---GPG----DRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHIL 218
Query: 253 ---RLMEGENTGPVN-----IGNPGEFTMLELAETVKELIN----PGIEIK--------- 291
L+ + V I N + A + E + P I++
Sbjct: 219 AADALLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLAS 278
Query: 292 MVENT-------PDDPRQRKP--------DISKAKELLGWEPKVKLRDGL 326
++E T P R +I KAK+ LG+ P V L +G+
Sbjct: 279 LLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGI 328
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 29/260 (11%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
+L+TGG G G+ ++ + ++ + E+ + +D+++K + + + DV +
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRD-EKKQDDMRKKYNNSKLKFYIGDVRDYR 65
Query: 92 LI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
I VD IYH A +++P++ +KTNV+GT N+L A G R++ ST
Sbjct: 66 SILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLST- 124
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
D ++P +N +G+ E VA++ D + I R N
Sbjct: 125 ----DKAVYP--------INAMGISKAMMEKVMVAKSRNVDSSKT---VICGTRYGNVMA 169
Query: 206 PRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNI 265
R G V+ F+ G+PLT+ P TR + D VD ++ E N G + +
Sbjct: 170 SR-----GSVIPLFVDLIKAGKPLTITDP-NMTRFMMTLEDAVDLVLYAFEHGNNGDIFV 223
Query: 266 GNPGEFTMLELAETVKELIN 285
T+ LA +KEL+N
Sbjct: 224 QKAPAATIETLAIALKELLN 243
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 34 VTGGAGFIGSHLVDKLMENEKNEVIV----ADNYFTGSKDNLKKWIGHPRFELIRH---- 85
+TG GF+G L++KL+ + I A + + + ++ + + F+ ++
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 86 -----DVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIK-TNVIGTLNM 128
D++EP L EVD I H A A+ F + P ++ TNV+GT +
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--ATVNFVE--PYSDLRATNVLGTREV 116
Query: 129 LGLAKRVGARILL-TSTSEVYGDPLIHPQ----------PETYWGNVNPIGVRSCYDEGK 177
L LAK++ ST+ V G+ + P G N Y + K
Sbjct: 117 LRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNG------YTQSK 170
Query: 178 RVAETLMFDYHRQHGIQIRIAR 199
+AE L+ + G+ + I R
Sbjct: 171 WLAEQLVREAAG--GLPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 20/122 (16%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDV 87
+ VTGG GF+G HLV +L+EN +++ + + ++ R ++ D+
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRS--ESLGEAHERIEEAGLEADRVRVLEGDL 58
Query: 88 TEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
T+P L +VD + H A AS ++ +TN+ GT ++L LA R+
Sbjct: 59 TQPNLGLSAAASRELAGKVDHVIHCA--ASY-DFQAPNEDAWRTNIDGTEHVLELAARLD 115
Query: 137 AR 138
+
Sbjct: 116 IQ 117
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 76/305 (24%), Positives = 111/305 (36%), Gaps = 70/305 (22%)
Query: 70 NLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 129
NL++ I D +P +IY+LA + P T + IGTL +L
Sbjct: 69 NLRRII----------DEIKP-----TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLL 113
Query: 130 ------GLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
GL K V + STSE+YG PQ ET P RS Y K A +
Sbjct: 114 EAVRTLGLIKSV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWI 166
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL-RGEPLTVQKPGTQT---- 238
+Y +G+ +FN PR NF+ + + R K G Q
Sbjct: 167 TVNYREAYGLFAVNGILFNHESPRRG-------ENFVTRKITRA--AAKIKLGLQEKLYL 217
Query: 239 ------RSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK- 291
R + + D V+ + +++ + I ++ E E E I + K
Sbjct: 218 GNLDAKRDWGHAKDYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKD 277
Query: 292 --MVENTPD----------DPRQRKP--------DISKAKELLGWEPKVKLRDGLPLM-E 330
+ E DPR +P D +KAKE LGW+P+V + M E
Sbjct: 278 KGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVE 337
Query: 331 EDFRS 335
ED
Sbjct: 338 EDLEL 342
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 94/333 (28%), Positives = 127/333 (38%), Gaps = 61/333 (18%)
Query: 31 RILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTGSKDNLKKWIGHPRFE--LIRHDV 87
RIL+TGG G IGS L L + K+ VI +D ++K H DV
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASD---------IRKPPAHVVLSGPFEYLDV 51
Query: 88 TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140
+ +E + I HLA S + K NP N+ G N+L LA+ RI
Sbjct: 52 LDFKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIF 110
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIQIRI 197
+ ST +G P T N + R+ Y K AE L YH + G+ R
Sbjct: 111 VPSTIGAFG-------PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYHHKFGVDFRS 163
Query: 198 AR----IFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ-KPGTQTRSFCYVSDMVDGLI 252
R I P D V F AL+ T KP T+ Y+ D + I
Sbjct: 164 LRYPGIISYDTLPGGGTTD-YAVQIFYE-ALKKGKYTCYLKPDTRL-PMMYMPDALRATI 220
Query: 253 RLMEGENT-----GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRK--- 304
LME NI FT E+A +K+ I P +I DPR++
Sbjct: 221 ELMEAPAEKLKHRRTYNI-TAMSFTPEEIAAEIKKHI-PEFQITYEV----DPRRQAIAD 274
Query: 305 --P---DISKAKELLGWEPKVKLRDGLPLMEED 332
P D S A++ GW+ K L M +D
Sbjct: 275 SWPMSLDDSNARKDWGWKHKY----DLDSMVKD 303
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF---TGSKDNLKKWI---GHPRFELI 83
MR VTGG GFIG LV +L++ + + + S L+ G R +
Sbjct: 1 MRYFVTGGTGFIGRRLVSRLLDRRREATV----HVLVRRQSLSRLEALAAYWGADRVVPL 56
Query: 84 RHDVTEPLL----------IEVDQIYHLACPASPIFYKYNP--VKTIKTNVIGTLNMLGL 131
D+TEP L ++D + HLA Y NV GT N++ L
Sbjct: 57 VGDLTEPGLGLSEADIAELGDIDHVVHLAA-----IYDLTADEEAQRAANVDGTRNVVEL 111
Query: 132 AKRVGARIL 140
A+R+ A
Sbjct: 112 AERLQAATF 120
|
Length = 657 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 33/214 (15%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNL---KKWIGHPRFELIRHDV 87
LVTGG GF+G H++ L+E ++ E+ V D F + + +K G I D+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF--GPELIEHFEKSQGKTYVTDIEGDI 60
Query: 88 T--EPLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 141
L V + H A +F N + + NV GT +L + + L+
Sbjct: 61 KDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVY 119
Query: 142 TSTSEV-----YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYH----RQHG 192
TS+ EV G P+ + +T + + + Y K +AE ++ + + +Q G
Sbjct: 120 TSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIVLNANGAPLKQGG 175
Query: 193 IQIRIA-RIFNTYGPRMNIDDGRVVSNFIAQALR 225
+ A R YG + ++ L
Sbjct: 176 YLVTCALRPMYIYG-----EGSHFLTEIFDFLLT 204
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 68/322 (21%), Positives = 107/322 (33%), Gaps = 57/322 (17%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTG G +G L L E+ +VA + P +L + L
Sbjct: 1 ILVTGANGQLGRELTRLL--AERGVEVVA--------------LDRPELDLTDPEAVAAL 44
Query: 92 LIEV--DQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
+ E D + + A Y + P N +G N+ GA ++ S
Sbjct: 45 VREARPDVVVNAA------AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHIS 98
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
T V+ P E P+ V Y K E + + +H I +R A ++
Sbjct: 99 TDYVFDGAKGGPYRED--DPTGPLNV---YGRTKLAGEQAVLAANPRHLI-LRTAWVYGE 152
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
YG N V + A + L V Q S D+ D L+ L+ GP
Sbjct: 153 YGN--NF-----VKTMLRLAAERDELRVVD--DQLGSPTSARDLADALLALIRKRLRGPA 203
Query: 264 -----NIGNPGEFTMLELA-ETVKELINPGIEIKMVEN----TP-DDPRQRKPDISKAKE 312
++ GE + + A E G ++ + TP P D SK +
Sbjct: 204 LAGTYHLAGSGETSWYDFARAIFDEAGADGGRVRPIPTAEYPTPARRPANSVLDTSKLEA 263
Query: 313 LLGWEPKVKLRDGLPLMEEDFR 334
G R+ L + ++
Sbjct: 264 TFGIPLP-DWREALAEVLDELL 284
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 65/330 (19%), Positives = 113/330 (34%), Gaps = 68/330 (20%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
V G +G IG + +L + +V+ + GSK P E++ D +
Sbjct: 2 AHVLGASGPIGREVARELRRRGWDVRLVSRS---GSKL-----AWLPGVEIVAADAMDAS 53
Query: 92 LIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
+ D IYH A PA + + P + NV+ A+ GA+++L
Sbjct: 54 SVIAAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVY 105
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGK-RVA-ETLMFDYHRQHGIQIRIARIFNTY 204
+YG P E P +G+ R E + H + I+ I R + Y
Sbjct: 106 MYGPQAGSPITEDT--PFQPTT-----RKGRIRAEMEERLLAAHAKGDIRALIVRAPDFY 158
Query: 205 GPRMNIDDGRVVSNF----IAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME---- 256
GP ++++ + L+G+ + Y+ D+ L+ L E
Sbjct: 159 GP-------GAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDA 211
Query: 257 -GENTGPVNIGNPGEFTMLELAE--------TVKELINP-------GIEIKMVENTPD-D 299
GE ++ G T EL K + P G+ ++ +
Sbjct: 212 FGE---AWHLPGAGAITTRELIAIAARAAGRPPKVRVIPKWTLRLAGLFDPLMREIVEMM 268
Query: 300 PRQRKP---DISKAKELLGWEPKVKLRDGL 326
+P D SK + G P L + +
Sbjct: 269 YLWEEPFILDSSKLEATFGEIPHTPLDEAI 298
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 68/317 (21%), Positives = 121/317 (38%), Gaps = 65/317 (20%)
Query: 34 VTGGAGFIGSHLVDKLMEN--------------EKNEVIVADNYFTGSKDNLKKWIGHPR 79
VTG +GFIGS LV +L++ +K ++ G+K+ LK
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLE---LEGAKERLK------- 52
Query: 80 FELIRHDVTEPLLIE-----VDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAK 133
L + D+ + + D ++H+A P F + + I+ V GTLN+L
Sbjct: 53 --LFKADLLDYGSFDAAIDGCDGVFHVASP--VDFDSEDPEEEMIEPAVKGTLNVLEACA 108
Query: 134 RVGA--RILLT-STSEVYGDPLIHPQP---ETYWGNVNPIGVRSC------YDEGKRVAE 181
+ + R++ T S + V +P E+ W +++ C Y K +AE
Sbjct: 109 KAKSVKRVVFTSSVAAVVWNPNRGEGKVVDESCWSDLD-----FCKKTKLWYALSKTLAE 163
Query: 182 TLMFDYHRQHGIQ---IRIARIF-NTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237
+++ ++G+ + + + P +N S I L+G Q
Sbjct: 164 KAAWEFAEENGLDLVTVNPSLVVGPFLQPSLNSS-----SQLILSLLKGNAEMYQN---G 215
Query: 238 TRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM-VENT 296
+ + +V D+ D I L E + I + T ELA + + P I E+
Sbjct: 216 SLALVHVDDVADAHILLYEKPSASGRYICSSHVVTRPELAALLAKKY-PQYNIPTKFEDD 274
Query: 297 PDDPRQRKPDISKAKEL 313
+ K K K+L
Sbjct: 275 QPGVARVKLSSKKLKDL 291
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 27/273 (9%)
Query: 32 ILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTGSKDNLKKWIGHP-RFELIRHDVTE 89
+LVTG +GF+ SH+V++L+E K V D ++L P R EL D+T+
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60
Query: 90 PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT 142
+ ++H+A P S F +P + IK + GTLN L A + R +LT
Sbjct: 61 EQSFDEVIKGCAGVFHVATPVS--FSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRFVLT 118
Query: 143 STSEVYGDP-LIHPQPETYWGNVNPIGVRSC-------YDEGKRVAETLMFDYHRQHGIQ 194
S++ P + N S Y K +AE + + ++ I
Sbjct: 119 SSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNID 178
Query: 195 IRI----ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250
+ I + G +S L + PG + +V D+
Sbjct: 179 LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPG----YYVHVVDICLA 234
Query: 251 LIRLMEGENTGPVNIGNPGEFTMLELAETVKEL 283
I +E I G F L +T+++
Sbjct: 235 HIGCLELPIARGRYICTAGNFDWNTLLKTLRKK 267
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 59/314 (18%), Positives = 114/314 (36%), Gaps = 76/314 (24%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVA------------------DNYFTGSKDNLK 72
+L+TG GF+G++L+ +L++ + I Y +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGL--NLWDE 58
Query: 73 KWIGHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTN 121
+ R +++ D+++P L EVD I H A+ + + Y + N
Sbjct: 59 LEL--SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPAN 113
Query: 122 VIGTLNMLGLA-----KR--------VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168
V+GT +L LA K V + + + D ++ + G
Sbjct: 114 VLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDML----------ESQNG 163
Query: 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIAR---IFNTYGPRMNIDDGRVVSNFIAQALR 225
+ + Y + K VAE L+ + + G+ + I R IF + D +F + L+
Sbjct: 164 LPNGYIQSKWVAEKLLREAANR-GLPVAIIRPGNIFGDSETGIGNTD-----DFFWRLLK 217
Query: 226 GEPLTVQKPGTQTRSFC----YVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVK 281
G P + +V+ + + L E ++ NP ++ +L + ++
Sbjct: 218 GCLQLGIYPISGAPLDLSPVDWVARAI-VKLALNESNEFSIYHLLNPPLISLNDLLDALE 276
Query: 282 ELINPGIEIKMVEN 295
E G IK V
Sbjct: 277 E---KGYSIKEVSY 287
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 83/353 (23%), Positives = 135/353 (38%), Gaps = 87/353 (24%)
Query: 33 LVTGGAGFIGSHLVDKLMENEKNEV--IV--ADNYFTGSKDNL--KKWIGHPRFELIRHD 86
L+TG G GS+L + L+ ++ EV I+ + N+ T D++ R +L D
Sbjct: 10 LITGITGQDGSYLTEFLL-SKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGD 68
Query: 87 VTEPL-------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML------GLAK 133
+++ I+ D++Y+LA + P T G L +L G
Sbjct: 69 LSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQET 128
Query: 134 RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+ +SE+YG PQ ET P RS Y K A +Y +G+
Sbjct: 129 GRQIKYYQAGSSEMYGS-TPPPQSET-----TPFHPRSPYAVAKVAAHWYTVNYREAYGL 182
Query: 194 QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK---------PGTQT------ 238
+FN PR RGE +K G Q
Sbjct: 183 FACNGILFNHESPR-----------------RGENFVTRKITRAVGRIKVGLQKKLFLGN 225
Query: 239 ----RSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTM-LELAETVKELIN-----PGI 288
R + + D V+ + +++ E P ++ + E + TV+E + G+
Sbjct: 226 LDASRDWGFAGDYVEAMWLMLQQEK--------PDDYVVATEESHTVEEFLEEAFGYVGL 277
Query: 289 EIKMVENTPDDPRQRKP--------DISKAKELLGWEPKVKLRDGLPLM-EED 332
K ++ DPR +P D SKA+E+LGW+PKV + +M +ED
Sbjct: 278 NWK--DHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGFEQLVKMMVDED 328
|
Length = 340 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 26 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWI-----GHPR 79
+N IL+TGG G G + +L+EN ++I+ S+D LK+W P
Sbjct: 1 MFNNKSILITGGTGSFGKAFISRLLENYNPKKIIIY------SRDELKQWEMQQKFPAPC 54
Query: 80 FELIRHDVT-----EPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNML 129
DV L VD + H A PA+ +YNP + I+TN+ G N++
Sbjct: 55 LRFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA----EYNPFECIRTNINGAQNVI 109
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 40/155 (25%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF---TGSKDNLKKWI----------G 76
+L+TG GF+G L++KL+ + + + Y S + ++ +
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPD---IGKIYLLIRGKSGQSAEERLRELLKDKLFDR 57
Query: 77 HPRFELIRH--------DVTEP-----------LLIEVDQIYHLACPASPIFYKYNPVKT 117
+ D++EP L+ EV+ I H A A+ F + +
Sbjct: 58 GRNLNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--ATVTFDERLD-EA 114
Query: 118 IKTNVIGTLNMLGLAKRV--GARILLTSTSEVYGD 150
+ NV+GTL +L LAKR + ST+ V GD
Sbjct: 115 LSINVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 52/308 (16%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIV----ADNYFTGSKDNLKK-------W---IGH 77
+L+TG GF+G++L+++L+ ++ A + + L++ W +
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHA-MERLREALRSYRLWHEDLAR 60
Query: 78 PRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 126
R E++ D++EP L VD I H + Y Y+ ++ NV+GT
Sbjct: 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVN-WVYPYSELR--GANVLGTR 117
Query: 127 NMLGLAKRVGARIL-LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185
+L LA A+ L ST V + E P G+ Y + K VAE L+
Sbjct: 118 EVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELLV- 176
Query: 186 DYHRQHGIQIRIAR----IFNTYGPRMNIDD--GRVVSNFIA--QALRGEPLTVQK-PGT 236
G+ + I R + N+Y +N D R+V +A + LT P
Sbjct: 177 REASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPQSPELTEDLTPVD 236
Query: 237 QTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIEIKMVEN 295
+V+ + L GPV ++ NP ++ E + ++ G +++V
Sbjct: 237 ------FVARAIVVLSSRPAASAGGPVFHVVNPEPVSLDEFLDWLERA---GYNLRLV-- 285
Query: 296 TPDDPRQR 303
+ D+ QR
Sbjct: 286 SFDEWLQR 293
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
M++LVTG GF+GS +V L+E E+ V+V + + G E++ D+
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT------SDRRNLEGLD-VEIVEGDLR 53
Query: 89 EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 142
+P + ++H+A A + +P + NV GT N+L A G R++ T
Sbjct: 54 DPASLRKAVAGCRALFHVA--ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111
Query: 143 ST 144
S+
Sbjct: 112 SS 113
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 47/219 (21%), Positives = 75/219 (34%), Gaps = 43/219 (19%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIV---ADNYFTG-----------------SKD 69
+L+TG GF+G++L+ +L++ +VI A + S D
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60
Query: 70 NLKKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 126
++ G P L E L VD I H A+ + + + + NV+GT
Sbjct: 61 RVEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTA 116
Query: 127 NMLGLAKRVGARIL-LTSTSEVYGDPLIH-------PQPETYWGNVNPIGVRSCYDEGKR 178
+L LA + L S+ V T G Y K
Sbjct: 117 EVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAG---GYGRSKW 173
Query: 179 VAETLMFDYHRQHGIQIRIARIFNTYGP----RMNIDDG 213
VAE L+ + + G+ + I R G +N D
Sbjct: 174 VAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDF 211
|
Length = 382 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK 68
I+VTGGAGFIGS++V L + +++V DN G+K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
|
Length = 308 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
M+ILVTG GF+G +V +L+ +EV A
Sbjct: 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAA 30
|
Length = 275 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR-HDVTEP 90
IL+ G GFIG L +L+ + +EV + T + +R D
Sbjct: 1 ILILGATGFIGRALARELL-EQGHEVTLLVRN-TKRLSKEDQEPVAVVEGDLRDLDSLSD 58
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG 149
+ VD + HLA +P + + +V GT N+L AK G + S+ YG
Sbjct: 59 AVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISSLGAYG 112
Query: 150 DP 151
D
Sbjct: 113 DL 114
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 33/124 (26%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
+LVTGG+G IG + L +V+V R +++ H+
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----------------RRDVVVHNAAILD 43
Query: 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGARILLTSTSE 146
+ + + I+ NV+GT +L A+ + R +L S+
Sbjct: 44 DGRLIDL-----------TGSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 147 VYGD 150
Sbjct: 93 GLFG 96
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.001
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
Query: 32 ILVTGGAGFIGSHLVDKLM--------------ENEKNEVIVADNYFTGSKDNLKKWIGH 77
+ VTG +G+I S +V L+ + +K E ++A G+K+ LK +
Sbjct: 8 VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA---LDGAKERLKLF--- 61
Query: 78 PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRV 135
+ +L+ E + D ++H ASP+F+ +T I + GT+N+L K
Sbjct: 62 -KADLLEESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117
Query: 136 GA--RILLTSTSE--VYGDPLIHPQ---PETYWGNVNPI-GVRSCYDEGKRVAETLMFDY 187
+ R++LTS++ ++ P I ET++ + + ++ Y K +AE +++
Sbjct: 118 PSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEF 177
Query: 188 HRQHGIQIRIARIFNTYGP 206
+ +GI + + GP
Sbjct: 178 AKDNGIDMVVLNPGFICGP 196
|
Length = 322 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD-NY--FTGSKDNLKKWIGHPRFELIR 84
IL+TG G IGS LV ++E VI AD + ++L K + L+
Sbjct: 3 KGKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKLSLVE 61
Query: 85 HDVTEP 90
D+T+
Sbjct: 62 LDITDQ 67
|
Length = 256 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 213 GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGN--PG 269
G ++ F QA G PLTV G QTR F + D V + I + G + N
Sbjct: 283 GTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTE 342
Query: 270 EFTMLELAETV-KELINPGIEIKMVENTPDDPRQ 302
+F++ ELA+ V K G+++++ + +PR
Sbjct: 343 QFSVNELAKLVTKAGEKLGLDVEV--ISVPNPRV 374
|
Length = 442 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP- 90
+LVTG G++G LV +L++ E ++V S + L R ++R D+ +P
Sbjct: 1 VLVTGATGYVGGRLVPRLLQ-EGHQVRAL----VRSPEKLADRPWSERVTVVRGDLEDPE 55
Query: 91 ----LLIEVDQIYHL 101
L +D Y+L
Sbjct: 56 SLRAALEGIDTAYYL 70
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 30 MRILVTGGAGFIGSHLVDKLMEN 52
M++ VTG GFIGS +V +L+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAA 23
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 343 | |||
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.96 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.96 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.95 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.94 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.94 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.93 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.9 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.89 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.89 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.88 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.88 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.86 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.86 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.86 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.85 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.84 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.84 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.84 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.84 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.83 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.83 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.83 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.82 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.82 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.82 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.82 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.82 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.81 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.81 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.81 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.8 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.8 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.79 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.78 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.78 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.78 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.78 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.77 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.77 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.77 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.77 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.77 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.77 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.76 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.76 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.76 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.76 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.75 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.75 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.75 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.75 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.75 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.75 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.75 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.75 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.74 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.74 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.74 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.74 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.73 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.73 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.73 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.73 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.72 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.72 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.72 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.71 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.71 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.71 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.71 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.7 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.7 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.7 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.7 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.7 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.69 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.68 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.68 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.68 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.68 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.68 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.67 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.66 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.66 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.66 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.65 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.63 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.63 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.63 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.63 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.63 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.63 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.62 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.6 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.59 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.57 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.57 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.56 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.56 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.55 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.55 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.54 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.54 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.52 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.49 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.46 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.46 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.45 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.45 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.44 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.43 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.43 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.43 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.4 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.39 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.39 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.33 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.29 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.29 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.27 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.27 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.26 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.21 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.2 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.15 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.07 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.05 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.05 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.98 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.97 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.82 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.82 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.76 | |
| PLN00106 | 323 | malate dehydrogenase | 98.71 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.65 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.62 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.52 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.52 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.42 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.41 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.41 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.36 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.33 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.29 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.25 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.2 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.17 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 98.15 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.15 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.13 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 98.1 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 98.07 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.03 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.97 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.97 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.96 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.89 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.88 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.87 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.85 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.83 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.8 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.78 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.77 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.74 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.72 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.71 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.68 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.65 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.65 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.58 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.55 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.54 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.54 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.53 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.53 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.52 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.46 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.46 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.38 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.38 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.36 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.35 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.33 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.32 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.31 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.3 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.29 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.27 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.26 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.25 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.23 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.22 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.21 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.21 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.19 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.19 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.19 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.18 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.18 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.16 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.15 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 97.14 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.13 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.12 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.12 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 97.12 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.09 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.04 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.03 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.01 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.97 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.95 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.93 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 96.92 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.91 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.89 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.87 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.87 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.83 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.83 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.81 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.81 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.75 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.66 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.65 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.63 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.62 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.61 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.6 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.58 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.56 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.54 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.53 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.5 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.49 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.49 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.47 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.47 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.46 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.45 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.43 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.37 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.37 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.35 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.35 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.34 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.33 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 96.31 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.29 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.26 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.24 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.23 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.2 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.19 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.18 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.17 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 96.13 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.12 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.12 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.1 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.07 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.02 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.02 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.01 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.98 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.96 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 95.95 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.93 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.91 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.91 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 95.9 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.89 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.88 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.85 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.83 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 95.8 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.8 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.77 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.76 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 95.68 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.67 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.64 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.6 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.57 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.56 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.51 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 95.47 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.45 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.44 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.43 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.39 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.38 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.37 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.36 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.35 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.33 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.28 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.28 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 95.26 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.26 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.24 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.24 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.24 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.2 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 95.16 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.14 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.09 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.07 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.07 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 95.03 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.01 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.01 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.0 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.99 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.95 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.95 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 94.95 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.94 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.86 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 94.84 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 94.83 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.82 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.77 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.76 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 94.76 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 94.74 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 94.74 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 94.7 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.69 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.68 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.57 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 94.51 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.49 |
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=338.09 Aligned_cols=325 Identities=77% Similarity=1.212 Sum_probs=305.7
Q ss_pred CCCChhhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCC
Q 019309 15 PLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIE 94 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 94 (343)
+-++....+..-..+++|+||||.||||+||++.|..+| |+|++++...+++...+......+.+++..-|...+.+.+
T Consensus 13 ~~~~~~~~~~~p~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~e 91 (350)
T KOG1429|consen 13 NNPSRLREQVKPSQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKE 91 (350)
T ss_pred CCcchhhhcccCCCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhccCcceeEEEeechhHHHHH
Confidence 333433334444467999999999999999999999999 9999999988888888888888899999999999999999
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchH
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
+|-|+|+|++.++.++..+|...+..|+.++.+++-.|++.+.||++.||..|||++...|..|++|.+..|..|.+.|.
T Consensus 92 vD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 92 VDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
-.|..+|.++..+.++.|+.+.|.|+.+.|||....++++.+..++..++++.++.++++|.+.++|++++|++++++++
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~L 251 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRL 251 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
++.+..+.+|+++++.+|+.|+++++.+..+....+++.+..+.++..+..|++++++.|||.|+.+++|+|+.++.|++
T Consensus 252 m~s~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr 331 (350)
T KOG1429|consen 252 MESDYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFR 331 (350)
T ss_pred hcCCCcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 019309 335 SRLGVP 340 (343)
Q Consensus 335 ~~~~~~ 340 (343)
++....
T Consensus 332 ~~i~~~ 337 (350)
T KOG1429|consen 332 ERIARE 337 (350)
T ss_pred HHHHHH
Confidence 887544
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-51 Score=371.09 Aligned_cols=312 Identities=74% Similarity=1.206 Sum_probs=268.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
..||||||||+||||++|+++|+++| ++|++++|................+++++.+|+.+..+.++|+|||+|+...+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~ 197 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 197 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccc
Confidence 45899999999999999999999999 99999998543322222222233578899999999888899999999987655
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHH
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~ 187 (343)
.....++...++.|+.++.+++++|++.+++|||+||.+|||+....+.+|+.+....|..+.+.|+.+|..+|++++.+
T Consensus 198 ~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y 277 (436)
T PLN02166 198 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDY 277 (436)
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 55556788899999999999999999998899999999999987777788886655567777889999999999999999
Q ss_pred HHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEecC
Q 019309 188 HRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGN 267 (343)
Q Consensus 188 ~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~ 267 (343)
.+..+++++++||+++|||+.....+.++..++..+..++.+.+++++.+.++|||++|+++++..+++....|+||+++
T Consensus 278 ~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~~giyNIgs 357 (436)
T PLN02166 278 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGN 357 (436)
T ss_pred HHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCCCceEEeCC
Confidence 88889999999999999998654445678889999999999988888889999999999999999999876688999999
Q ss_pred CCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhCCC
Q 019309 268 PGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVP 340 (343)
Q Consensus 268 ~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~~~ 340 (343)
++.+|+.|+++.+.+.+|.+..+.+.+..........+|++|++++|||+|+++++++++++++||+.+....
T Consensus 358 ~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 358 PGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred CCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998777777665555555667899999999999999999999999999998876543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=366.98 Aligned_cols=310 Identities=74% Similarity=1.213 Sum_probs=265.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
.+|+|||||||||||++|+++|+++| ++|++++|......+.........+++++.+|+.++.+.++|+|||+|+...+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~ 196 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASP 196 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecch
Confidence 56999999999999999999999999 99999987533322222222334578999999999988899999999987665
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHH
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~ 187 (343)
..+..++...++.|+.++.+++++|++.++||||+||..+|+.....+.+|+.+....|..+.+.|+.+|..+|+++..+
T Consensus 197 ~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y 276 (442)
T PLN02206 197 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDY 276 (442)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 55566788899999999999999999999999999999999987767788876554456666788999999999999999
Q ss_pred HHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEecC
Q 019309 188 HRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGN 267 (343)
Q Consensus 188 ~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~ 267 (343)
.++.+++++++||+++|||+.....+.++..++..+..++++.+++++++.++++|++|+|++++.++++...|.||+++
T Consensus 277 ~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~~g~yNIgs 356 (442)
T PLN02206 277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGN 356 (442)
T ss_pred HHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCCCceEEEcC
Confidence 88889999999999999998654445677888899999999988888989999999999999999999876678999999
Q ss_pred CCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 268 PGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 268 ~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
++.+|+.|+++.+.+.++.+..+...+..........+|.+|++++|||+|+++++|+|+++++||++...
T Consensus 357 ~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~ 427 (442)
T PLN02206 357 PGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVF 427 (442)
T ss_pred CCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999987777766654445556678999999999999999999999999999987754
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=326.85 Aligned_cols=301 Identities=32% Similarity=0.488 Sum_probs=271.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEec-CCCCCccchhhhcCCCceEEEEcccCCcccC-------CCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADN-YFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi~ 100 (343)
|++|||||.||||++++++++++.. .+|+.++. .-.++.+.+......++..++++|+.|..+. ++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 7899999999999999999999984 44777766 3345666777777778999999999987543 5999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCC--CCCCCCCCCCCCCCCCCchHHh
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIH--PQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~--~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
+|+-..+..+..+|..+++.|+.||.+|++++++... ||+++|+..|||+-... ..+|+ +|..|.+||++|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9999888999999999999999999999999999985 99999999999986443 57777 899999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
|+.+..+++.|.+.+|++++|.|+++-|||.+-+ -.+++..+..++.|++++++|+|.+.+||+||+|-|+++..+++
T Consensus 156 KAasD~lVray~~TYglp~~ItrcSNNYGPyqfp--EKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQFP--EKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCc--hhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 9999999999999999999999999999999754 36889999999999999999999999999999999999999999
Q ss_pred cCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-----eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHH
Q 019309 257 GEN-TGPVNIGNPGEFTMLELAETVKELINPGIE-----IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330 (343)
Q Consensus 257 ~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~ 330 (343)
+.. +++||++++...+.-|+++.|.+.+|+..+ +.+....+.--.+..+|.+|+.++|||.|..+|+++|++++
T Consensus 234 kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv 313 (340)
T COG1088 234 KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGLRKTV 313 (340)
T ss_pred cCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHHHHHHH
Confidence 988 779999999999999999999999998766 78888777766778899999999999999999999999999
Q ss_pred HHHHHhh
Q 019309 331 EDFRSRL 337 (343)
Q Consensus 331 ~~~~~~~ 337 (343)
+||.++.
T Consensus 314 ~WY~~N~ 320 (340)
T COG1088 314 DWYLDNE 320 (340)
T ss_pred HHHHhch
Confidence 9998763
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=323.92 Aligned_cols=297 Identities=30% Similarity=0.480 Sum_probs=261.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-------CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi~~a 102 (343)
|+||||||+||||+|.+.+|++.| ++|++++.-.++..+.+... .++++.+|+.|.++. ++|+|||+|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence 789999999999999999999999 99999998766665555432 278999999997543 699999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|...+..+-.+|..+++-|+.++..|+++|+++++ +|||-||+.+||.+...|++|+ .|..|.+|||.||++.|
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sKlm~E 150 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSKLMSE 150 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHHHHHH
Confidence 99888889999999999999999999999999999 8999999999999999999999 78889999999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCC------CC-CccHHHHHHHHHHcCC-CeEEec------CCceeEeeeehHHH
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMN------ID-DGRVVSNFIAQALRGE-PLTVQK------PGTQTRSFCYVSDM 247 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~------~~-~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~v~v~D~ 247 (343)
++++.+....+++++++|-.++.|.... +. ....++..+..++... .+.++| ||...+|||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 9999999999999999999999996532 11 1345565555555443 367776 46678999999999
Q ss_pred HHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccc-cH
Q 019309 248 VDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKV-KL 322 (343)
Q Consensus 248 a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~-~~ 322 (343)
|++.+.+++.-. +.+||+++|+.+|+.|+++.+.++.|.+.+.+..+..+.++...+.|.+|++++|||+|++ ++
T Consensus 231 A~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L 310 (329)
T COG1087 231 ADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDL 310 (329)
T ss_pred HHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccCCH
Confidence 999999997422 3599999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HhHHHHHHHHHHHh
Q 019309 323 RDGLPLMEEDFRSR 336 (343)
Q Consensus 323 ~e~l~~~~~~~~~~ 336 (343)
++.++..+.|...+
T Consensus 311 ~~ii~~aw~W~~~~ 324 (329)
T COG1087 311 EDIIKDAWDWHQQR 324 (329)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998753
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=347.91 Aligned_cols=308 Identities=26% Similarity=0.353 Sum_probs=250.1
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc------CCCceEEEEcccCCcc-----cC
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI------GHPRFELIRHDVTEPL-----LI 93 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~-----~~ 93 (343)
+..++|+|||||||||||++|+++|+++| ++|++++|............. ...++.++.+|+.|.. +.
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 44567999999999999999999999999 999999985432222121111 1135889999999863 45
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
++|+|||+|+.........++...++.|+.++.+++++|++.++ +|||+||.++||...+.+..|+ .+..|.++
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~ 164 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSP 164 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCCh
Confidence 79999999997665555667888899999999999999999998 8999999999997666666666 45667788
Q ss_pred hHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
|+.+|..+|.+++.+..+++++++++||+++|||+.++.. ..+++.++..+..++++.+++++.+.++|+|++|+|++
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a 244 (348)
T PRK15181 165 YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQA 244 (348)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHH
Confidence 9999999999999988888999999999999999865432 34678888888889888888889999999999999999
Q ss_pred HHHHHhcC----CCcceEecCCCccCHHHHHHHHHHHhCCCc------ceEEccCCCCCCCccccChHHHHHhcCCcccc
Q 019309 251 LIRLMEGE----NTGPVNIGNPGEFTMLELAETVKELINPGI------EIKMVENTPDDPRQRKPDISKAKELLGWEPKV 320 (343)
Q Consensus 251 i~~~~~~~----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~ 320 (343)
++.++... .+++||+++++.+|+.|+++.+.+.++... .+...+..........+|.+|++++|||.|++
T Consensus 245 ~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P~~ 324 (348)
T PRK15181 245 NLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEF 324 (348)
T ss_pred HHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCCCC
Confidence 99877643 257999999999999999999999986321 11122222233345678999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhC
Q 019309 321 KLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 321 ~~~e~l~~~~~~~~~~~~ 338 (343)
+++|+|+++++||+.+..
T Consensus 325 sl~egl~~~~~w~~~~~~ 342 (348)
T PRK15181 325 DIKEGLKQTLKWYIDKHS 342 (348)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999987754
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=318.70 Aligned_cols=304 Identities=29% Similarity=0.482 Sum_probs=241.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC-Cc-----ccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-EP-----LLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~~d~vi~~a 102 (343)
|+||||||+||||++|+++|+++ | ++|++++|... .........+++++.+|+. +. .+.++|+|||+|
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTD----RLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHH----HHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 68999999999999999999987 6 89999987432 1222223356899999997 43 234799999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCC--CCCCCCCchHHhHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNV--NPIGVRSCYDEGKRVA 180 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~--~~~~~~~~Y~~~K~~~ 180 (343)
+...+.....++...++.|+.++.+++++|++.+.||||+||..+||...+.++.|+..+.. ....|.+.|+.+|..+
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM 156 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence 87655555678888899999999999999999887999999999999766556666642110 1123556899999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
|+.++.+..+++++++++||+.+|||+... ...+++..++..+..++++.+.+++++.++|||++|++++++.+
T Consensus 157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~ 236 (347)
T PRK11908 157 DRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKI 236 (347)
T ss_pred HHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHH
Confidence 999999988889999999999999998542 12457788888888999888887888999999999999999999
Q ss_pred HhcCC----CcceEecCC-CccCHHHHHHHHHHHhCCCcceE-------Ec--cCC------CCCCCccccChHHHHHhc
Q 019309 255 MEGEN----TGPVNIGNP-GEFTMLELAETVKELINPGIEIK-------MV--ENT------PDDPRQRKPDISKAKELL 314 (343)
Q Consensus 255 ~~~~~----~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~-------~~--~~~------~~~~~~~~~~~~~~~~~l 314 (343)
++++. ++.||++++ ..+|+.|+++.+.+.++....+. .. +.. .........|.+|++++|
T Consensus 237 ~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 316 (347)
T PRK11908 237 IENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQEL 316 (347)
T ss_pred HhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCChHHHHHHc
Confidence 98752 568999987 48999999999999998543221 11 100 011223456889999999
Q ss_pred CCcccccHHhHHHHHHHHHHHhhC
Q 019309 315 GWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 315 g~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
||+|+++++|+++++++|+++...
T Consensus 317 Gw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 317 GWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=323.94 Aligned_cols=312 Identities=26% Similarity=0.323 Sum_probs=237.7
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------chhhh--cCCCceEEEE
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------NLKKW--IGHPRFELIR 84 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------~~~~~--~~~~~~~~~~ 84 (343)
++...++|+||||||+||||++|+++|+++| ++|++++|......+ .+... ....+++++.
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~ 119 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYV 119 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEE
Confidence 3444577899999999999999999999999 999998753211110 00000 0113688999
Q ss_pred cccCCcccC-------CCCEEEEecCCCCccccccCh---HHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCC
Q 019309 85 HDVTEPLLI-------EVDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPL 152 (343)
Q Consensus 85 ~d~~~~~~~-------~~d~vi~~a~~~~~~~~~~~~---~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~ 152 (343)
+|+.|.... ++|+|||+|+.........++ ...++.|+.++.+++++|++.++ +||++||..+||...
T Consensus 120 ~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~ 199 (442)
T PLN02572 120 GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN 199 (442)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC
Confidence 999987321 589999999765433333332 45578999999999999999886 799999999998643
Q ss_pred CCCCCCCCCC-------C--CCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-----------
Q 019309 153 IHPQPETYWG-------N--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD----------- 212 (343)
Q Consensus 153 ~~~~~e~~~~-------~--~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~----------- 212 (343)
.+.+|+..+ + ..+..|.++|+.+|.++|.+++.+++++|++++++||++||||++....
T Consensus 200 -~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~ 278 (442)
T PLN02572 200 -IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDY 278 (442)
T ss_pred -CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCc
Confidence 234443211 0 0255677899999999999999999989999999999999999864310
Q ss_pred ----ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-C---cceEecCCCccCHHHHHHHHHHH-
Q 019309 213 ----GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-T---GPVNIGNPGEFTMLELAETVKEL- 283 (343)
Q Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~---~~~~~~~~~~~s~~e~~~~i~~~- 283 (343)
...+..++..+..|+++.+++++.+.++|+||+|+|++++.++++.. . .+||+++ +.+|+.|+++.+.+.
T Consensus 279 ~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~ 357 (442)
T PLN02572 279 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAG 357 (442)
T ss_pred ccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHH
Confidence 24566777888888888888999999999999999999999998643 2 3789976 689999999999999
Q ss_pred --hCCCcceEEccCCCC--CCCccccChHHHHHhcCCcccc---cHHhHHHHHHHHHHHhhC
Q 019309 284 --INPGIEIKMVENTPD--DPRQRKPDISKAKELLGWEPKV---KLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 284 --~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~p~~---~~~e~l~~~~~~~~~~~~ 338 (343)
+|.+..+...+.... .......|.+|++. |||.|++ ++.|++.+++.||+++..
T Consensus 358 ~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 358 EKLGLDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HhhCCCCCeeeCCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 887766665543322 22344578999975 9999998 899999999999986643
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=316.24 Aligned_cols=304 Identities=27% Similarity=0.408 Sum_probs=240.7
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
++..+|+|||||||||||++|++.|.++| ++|++++|.... ..... ...++++.+|+.+.. +.++|+||
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~---~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi 90 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNE---HMSED--MFCHEFHLVDLRVMENCLKVTKGVDHVF 90 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccc---ccccc--cccceEEECCCCCHHHHHHHHhCCCEEE
Confidence 33467999999999999999999999999 999999985321 11110 113577889998753 35799999
Q ss_pred EecCCCCcc-ccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCC----CCCCCCCCCCCCCCCCCch
Q 019309 100 HLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIH----PQPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 100 ~~a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~----~~~e~~~~~~~~~~~~~~Y 173 (343)
|+|+..... ....++...+..|+.++.+++++|++.++ +|||+||.++|+..... ++.|+.. .+..|.++|
T Consensus 91 h~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Y 167 (370)
T PLN02695 91 NLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAY 167 (370)
T ss_pred EcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHH
Confidence 999865321 12234556678899999999999999998 89999999999865321 3444421 256777899
Q ss_pred HHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHc-CCCeEEecCCceeEeeeehHHHHHH
Q 019309 174 DEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALR-GEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
+.+|..+|+.++.+..+++++++++||+++|||+..... ......++..+.. +.++.+++++++.++++|++|++++
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~a 247 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEG 247 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHH
Confidence 999999999999998888999999999999999754332 2345567776665 4678888899999999999999999
Q ss_pred HHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHH
Q 019309 251 LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330 (343)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~ 330 (343)
+..+++....+.||+++++.+|+.|+++.+.+..|.+.++...+... .......|++|++++|||.|+++++++|++++
T Consensus 248 i~~~~~~~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~ 326 (370)
T PLN02695 248 VLRLTKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTLIKEKLGWAPTMRLKDGLRITY 326 (370)
T ss_pred HHHHHhccCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC-CccccccCHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 99998876678999999999999999999999998766665544322 22334679999999999999999999999999
Q ss_pred HHHHHhhC
Q 019309 331 EDFRSRLG 338 (343)
Q Consensus 331 ~~~~~~~~ 338 (343)
+||++...
T Consensus 327 ~~~~~~~~ 334 (370)
T PLN02695 327 FWIKEQIE 334 (370)
T ss_pred HHHHHHHH
Confidence 99987754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=316.30 Aligned_cols=300 Identities=24% Similarity=0.266 Sum_probs=237.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhhhc------CCCceEEEEcccCCccc-----C--CC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKKWI------GHPRFELIRHDVTEPLL-----I--EV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~------~~~~~~~~~~d~~~~~~-----~--~~ 95 (343)
|+||||||+||||++|+++|+++| ++|++++|..... .+.+.... ...+++++.+|+.|... . ++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 79 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP 79 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence 689999999999999999999999 9999999864321 11111111 02368899999998732 2 57
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC----eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~----r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
|+|||+|+.........++...++.|+.++.+++++|++.++ +|||+||.++||.....+.+|+ .+..|.+
T Consensus 80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~ 154 (343)
T TIGR01472 80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRS 154 (343)
T ss_pred CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCC
Confidence 999999997654444456677788899999999999998874 7999999999997666677787 5777888
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~ 249 (343)
+|+.+|..+|.+++.+++++++++++.|+.++|||+.... ....+..++..+..++. ..+++++.+.++|+|++|+|+
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~ 234 (343)
T TIGR01472 155 PYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVE 234 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHH
Confidence 9999999999999999988899999999999999974321 12345556666666764 345578889999999999999
Q ss_pred HHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcce-------------------EEcc--CCCCCCCccccChH
Q 019309 250 GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEI-------------------KMVE--NTPDDPRQRKPDIS 308 (343)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~-------------------~~~~--~~~~~~~~~~~~~~ 308 (343)
+++.+++++..+.||+++++.+|+.|+++.+.+.+|.+..+ ...+ ..+........|.+
T Consensus 235 a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 314 (343)
T TIGR01472 235 AMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDAT 314 (343)
T ss_pred HHHHHHhcCCCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchhcCCHH
Confidence 99999987666899999999999999999999999865321 1111 12233334567999
Q ss_pred HHHHhcCCcccccHHhHHHHHHHHHHH
Q 019309 309 KAKELLGWEPKVKLRDGLPLMEEDFRS 335 (343)
Q Consensus 309 ~~~~~lg~~p~~~~~e~l~~~~~~~~~ 335 (343)
|++++|||+|+++++|+|++++++|++
T Consensus 315 k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 315 KAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999974
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=320.47 Aligned_cols=308 Identities=30% Similarity=0.434 Sum_probs=234.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
.|+|||||||||||++|+++|+++|.++|++++|...... .+... ....+++++.+|+.|.. +.++|+|||
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK-HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh-hhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 4899999999999999999999983289999987532211 11110 01136899999998863 347999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCC-----------CC---
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNV-----------NP--- 166 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~-----------~~--- 166 (343)
+|+...+..+..++.+.+..|+.++.+++++|++.+.||||+||.++||........|+..... .+
T Consensus 93 lAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~~ 172 (386)
T PLN02427 93 LAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIF 172 (386)
T ss_pred cccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCccccccccccccccccccccccc
Confidence 9987654444456667778899999999999998877999999999999754333333321100 01
Q ss_pred ---CCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC---------CccHHHHHHHHHHcCCCeEEecC
Q 019309 167 ---IGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID---------DGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 167 ---~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
..+.+.|+.+|..+|+++..+.++++++++++||++||||+.... ...++..++..+..++++.++++
T Consensus 173 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 252 (386)
T PLN02427 173 GSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDG 252 (386)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeEEECC
Confidence 123467999999999999998888899999999999999975321 12355666777888888888888
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---CcceEecCC-CccCHHHHHHHHHHHhCCCcc-----eE--EccCC------C
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNP-GEFTMLELAETVKELINPGIE-----IK--MVENT------P 297 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~-----~~--~~~~~------~ 297 (343)
+.+.++|||++|+|++++.+++++. +++||++++ +.+|+.|+++.+.+.+|.... .. ..+.. .
T Consensus 253 g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (386)
T PLN02427 253 GQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFYGEGY 332 (386)
T ss_pred CCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCcccccCccc
Confidence 8888999999999999999998753 458999987 599999999999999974211 11 01110 1
Q ss_pred CCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 298 DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 298 ~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
.+......|.+|++++|||+|+++++++|+++++||++..
T Consensus 333 ~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~ 372 (386)
T PLN02427 333 DDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTY 372 (386)
T ss_pred cchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHH
Confidence 1234456799999999999999999999999999987654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=315.75 Aligned_cols=301 Identities=29% Similarity=0.405 Sum_probs=237.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEE-EecCCCCCc-cchhhhcCCCceEEEEcccCCccc-----C--CCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIV-ADNYFTGSK-DNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~-~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~vi~ 100 (343)
|+|||||||||||++|++.|+++| +++++ ++|...... ..........+++++.+|+.|... . ++|+|||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 689999999999999999999999 76544 444221110 111111122367888999998632 1 4899999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEeCCcccCCCC--CCCCCCCCCCCCCCCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPL--IHPQPETYWGNVNPIG 168 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~---------~~-r~i~~SS~~v~~~~~--~~~~~e~~~~~~~~~~ 168 (343)
+||.........++...++.|+.++.+++++|.+. ++ +||++||.++|+... ..+++|+ .+..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~~ 155 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPYA 155 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCCC
Confidence 99976544445567889999999999999999863 45 899999999998642 3457777 5667
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
|.+.|+.+|..+|.+++.++++.+++++++||+++|||+..+ ..++..++..+..++++.+++++++.++|+|++|++
T Consensus 156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP--EKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc--ccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 788999999999999999988889999999999999998532 357777888888888888888999999999999999
Q ss_pred HHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc------------eEEccCCCCCCCccccChHHHHHhcC
Q 019309 249 DGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIE------------IKMVENTPDDPRQRKPDISKAKELLG 315 (343)
Q Consensus 249 ~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~lg 315 (343)
+++..+++... ++.||+++++.+|+.|+++.+.+.++.... +...+..+.......+|.+|++++||
T Consensus 234 ~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 313 (355)
T PRK10217 234 RALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARELG 313 (355)
T ss_pred HHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHHhcC
Confidence 99999998765 579999999999999999999999874221 11112222233445789999999999
Q ss_pred CcccccHHhHHHHHHHHHHHhhC
Q 019309 316 WEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 316 ~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
|.|+++++|+|+++++||+.+..
T Consensus 314 ~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 314 WLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred CCCcCcHHHHHHHHHHHHHhCHH
Confidence 99999999999999999987643
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=337.40 Aligned_cols=310 Identities=28% Similarity=0.501 Sum_probs=247.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi 99 (343)
..+|+|||||||||||++|+++|+++ | ++|++++|.... ........+++++.+|++|. .+.++|+||
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~----~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~Vi 387 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDA----ISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVL 387 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchh----hhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEE
Confidence 36789999999999999999999986 6 999999985322 12222335789999999874 235899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCC-CCCC-CCCCchHHhH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGN-VNPI-GVRSCYDEGK 177 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~-~~~~-~~~~~Y~~~K 177 (343)
|+|+...+..+..++...++.|+.++.+++++|++++.||||+||.++||.....+++|+.+.. ..+. .|.+.|+.+|
T Consensus 388 HlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK 467 (660)
T PRK08125 388 PLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSK 467 (660)
T ss_pred ECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHH
Confidence 9999766555566778889999999999999999988799999999999976556777874321 0122 3456899999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
..+|++++.+.++++++++++||+++|||++.. .....+..++..+..++++.+.+++.+.++|||++|+|+++
T Consensus 468 ~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~ 547 (660)
T PRK08125 468 QLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEAL 547 (660)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHH
Confidence 999999999988889999999999999997532 12356788888888888888888888999999999999999
Q ss_pred HHHHhcCC----CcceEecCCC-ccCHHHHHHHHHHHhCCCcceEEccCC---------------CCCCCccccChHHHH
Q 019309 252 IRLMEGEN----TGPVNIGNPG-EFTMLELAETVKELINPGIEIKMVENT---------------PDDPRQRKPDISKAK 311 (343)
Q Consensus 252 ~~~~~~~~----~~~~~~~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 311 (343)
+.++++.. +++||+++++ .+|+.|+++.+.+.+|........+.. ..+.....+|.+|++
T Consensus 548 ~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~ 627 (660)
T PRK08125 548 FRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAR 627 (660)
T ss_pred HHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccCCChHHHH
Confidence 99998742 4589999985 799999999999999853211111110 012233457999999
Q ss_pred HhcCCcccccHHhHHHHHHHHHHHhhCCCC
Q 019309 312 ELLGWEPKVKLRDGLPLMEEDFRSRLGVPK 341 (343)
Q Consensus 312 ~~lg~~p~~~~~e~l~~~~~~~~~~~~~~~ 341 (343)
++|||.|.++++|+|+++++||++......
T Consensus 628 ~~LGw~P~~~lee~l~~~i~~~~~~~~~~~ 657 (660)
T PRK08125 628 RLLDWEPKIDMQETIDETLDFFLRTVDLTE 657 (660)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999998876543
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=311.81 Aligned_cols=305 Identities=22% Similarity=0.284 Sum_probs=242.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhc-----CCCceEEEEcccCCcccC-------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWI-----GHPRFELIRHDVTEPLLI-------E 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~-----~~~~~~~~~~d~~~~~~~-------~ 94 (343)
++|+||||||+||||++|+++|+++| ++|++++|...... ..+.... ...+++++.+|+.|.... +
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 46899999999999999999999999 99999988542211 1121111 123588999999986321 5
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC------eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~------r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+|+|||+|+.........++...++.|+.++.+++++|++.++ +||++||.++||.... +++|+ .+..
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~ 157 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH 157 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence 8999999997654444556777789999999999999998874 7999999999997654 67777 5777
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEE-ecCCceeEeeeehHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTV-QKPGTQTRSFCYVSD 246 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D 246 (343)
|.+.|+.+|.++|.+++.++.+++++++..|+.++|||+.... ....+..++..+..++.+.+ .+++++.++|+|++|
T Consensus 158 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 237 (340)
T PLN02653 158 PRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGD 237 (340)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHH
Confidence 8889999999999999999988899999999999999974322 12344455566667766554 477889999999999
Q ss_pred HHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCC--cceEEccC--CCCCCCccccChHHHHHhcCCcccccH
Q 019309 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPG--IEIKMVEN--TPDDPRQRKPDISKAKELLGWEPKVKL 322 (343)
Q Consensus 247 ~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~lg~~p~~~~ 322 (343)
+|++++.++++...+.||+++++.+|+.|+++.+.+.+|.+ ..+.+.+. .+........|.+|++++|||+|++++
T Consensus 238 ~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l 317 (340)
T PLN02653 238 YVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGF 317 (340)
T ss_pred HHHHHHHHHhcCCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCCCCH
Confidence 99999999997667899999999999999999999999864 22333221 233444556799999999999999999
Q ss_pred HhHHHHHHHHHHHhhCC
Q 019309 323 RDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 323 ~e~l~~~~~~~~~~~~~ 339 (343)
+|+|+++++||++..+.
T Consensus 318 ~~gi~~~~~~~~~~~~~ 334 (340)
T PLN02653 318 EQLVKMMVDEDLELAKR 334 (340)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999977653
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=284.71 Aligned_cols=302 Identities=28% Similarity=0.449 Sum_probs=257.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEec-CCCCCccchhhhcCCCceEEEEcccCCcccC-------CCCEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADN-YFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIY 99 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi 99 (343)
.++++||||.||||++.+..+...-+ +..+.++- ........+......++.+++.+|+.+.... ++|.|+
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vi 85 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVI 85 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhh
Confidence 38999999999999999999999863 44544443 2222233344444568999999999887432 699999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCC-CCCCCCCCCCCCCCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQP-ETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~-e~~~~~~~~~~~~~~Y~~~ 176 (343)
|+|+...+..+..++..+...|+.++..|+++++..|. +|||+||..|||++.+.... |. +++.|.++|+.+
T Consensus 86 hfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAas 160 (331)
T KOG0747|consen 86 HFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAAS 160 (331)
T ss_pred hhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHH
Confidence 99998888788888899999999999999999999865 79999999999998766555 66 788999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
|+++|..++.+..+++++++++|.++||||++-+ ...++.++.....+++.++.+++.+.++++|++|+++++..+++
T Consensus 161 KaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~--~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~ 238 (331)
T KOG0747|consen 161 KAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYP--EKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLE 238 (331)
T ss_pred HHHHHHHHHHHhhccCCcEEEEeccCccCCCcCh--HHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998754 35788899989999999999999999999999999999999999
Q ss_pred cCC-CcceEecCCCccCHHHHHHHHHHHhCCC-------cceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHH
Q 019309 257 GEN-TGPVNIGNPGEFTMLELAETVKELINPG-------IEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 328 (343)
Q Consensus 257 ~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~ 328 (343)
+++ +++||++.+...+..|+++.+.+.++.. ..+...+..+....+..++.+|++ .|||+|+++|+++|+.
T Consensus 239 Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eGLrk 317 (331)
T KOG0747|consen 239 KGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEEGLRK 317 (331)
T ss_pred cCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCcccCcHHHHHHH
Confidence 977 7899999999999999999999998652 333444555555566788999999 6999999999999999
Q ss_pred HHHHHHHhhC
Q 019309 329 MEEDFRSRLG 338 (343)
Q Consensus 329 ~~~~~~~~~~ 338 (343)
+++||.++.+
T Consensus 318 tie~y~~~~~ 327 (331)
T KOG0747|consen 318 TIEWYTKNFK 327 (331)
T ss_pred HHHHHHhhhc
Confidence 9999988763
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=307.48 Aligned_cols=303 Identities=25% Similarity=0.326 Sum_probs=238.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi 99 (343)
+++|+||||||+||||+++++.|+++| ++|++++|................+++++.+|+.+... .++|+||
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 467999999999999999999999999 99999998654322211111112357788999988642 2579999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCC-CCCCCCCCCCCCCCCCCCCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-IHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
|+|+.........++...++.|+.++.+++++|++.+ + +||++||..+|+... ..+.+|+ .+..|.++|+.+
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~s 155 (349)
T TIGR02622 81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSS 155 (349)
T ss_pred ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhH
Confidence 9998655444566788899999999999999999877 5 899999999998643 2356666 566677899999
Q ss_pred HHHHHHHHHHHHHHh-------CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 177 KRVAETLMFDYHRQH-------GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 177 K~~~E~~~~~~~~~~-------~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
|..+|.+++.++.++ +++++++||+++|||+... ...+++.++..+..++.+.+ +++.+.++|+|++|+|+
T Consensus 156 K~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~-~~~~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v~D~a~ 233 (349)
T TIGR02622 156 KACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA-EDRLIPDVIRAFSSNKIVII-RNPDATRPWQHVLEPLS 233 (349)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch-hhhhhHHHHHHHhcCCCeEE-CCCCcccceeeHHHHHH
Confidence 999999999887654 8999999999999997422 24677888888888887775 56788999999999999
Q ss_pred HHHHHHhcC------CCcceEecCC--CccCHHHHHHHHHHHhC-CCcceEEcc--CCCCCCCccccChHHHHHhcCCcc
Q 019309 250 GLIRLMEGE------NTGPVNIGNP--GEFTMLELAETVKELIN-PGIEIKMVE--NTPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 250 ~i~~~~~~~------~~~~~~~~~~--~~~s~~e~~~~i~~~~g-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
+++.++++. .++.||++++ +.++..|+++.+.+.++ .+..+...+ ..........+|.+|++++|||+|
T Consensus 234 a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p 313 (349)
T TIGR02622 234 GYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHP 313 (349)
T ss_pred HHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCC
Confidence 999888742 2579999974 79999999999998775 333333321 222333445679999999999999
Q ss_pred cccHHhHHHHHHHHHHHhh
Q 019309 319 KVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 319 ~~~~~e~l~~~~~~~~~~~ 337 (343)
+++++++|+++++|+++..
T Consensus 314 ~~~l~~gi~~~i~w~~~~~ 332 (349)
T TIGR02622 314 RWGLEEAVSRTVDWYKAWL 332 (349)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999997654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=307.76 Aligned_cols=300 Identities=29% Similarity=0.427 Sum_probs=234.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC-CCccchhhhcCCCceEEEEcccCCccc-------CCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT-GSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~~ 101 (343)
|+||||||+||||++|+++|+++|...|+++++... ...+.........+++++.+|+.|... .++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 689999999999999999999999334665555321 111122221112457889999998632 258999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEeCCcccCCCCC----------CCCCCCCC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPLI----------HPQPETYW 161 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~---------~~-r~i~~SS~~v~~~~~~----------~~~~e~~~ 161 (343)
|+.........++...++.|+.++.+++++|++. ++ +|||+||.++|+.... .+++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~-- 158 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET-- 158 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence 9865433344567788999999999999999874 45 8999999999986321 124555
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..|.+.|+.+|..+|.+++.++++++++++++|++.||||+... ..++..++..+..++.+.+++++++.+++
T Consensus 159 ---~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 159 ---TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred ---CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc--cchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 5677888999999999999999988889999999999999998432 35677788888888888888888999999
Q ss_pred eehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcce--------EEccCCCCCCCccccChHHHHH
Q 019309 242 CYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEI--------KMVENTPDDPRQRKPDISKAKE 312 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 312 (343)
||++|+|+++..+++... ++.||+++++.+|+.|+++.+.+.+|...+. ...+..+.......+|++|+++
T Consensus 234 v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (352)
T PRK10084 234 LYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISR 313 (352)
T ss_pred EEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHHHHH
Confidence 999999999999998755 6799999999999999999999999853211 1111122223345689999999
Q ss_pred hcCCcccccHHhHHHHHHHHHHHh
Q 019309 313 LLGWEPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 313 ~lg~~p~~~~~e~l~~~~~~~~~~ 336 (343)
+|||+|+++++|+|+++++||+++
T Consensus 314 ~lg~~p~~~l~~~l~~~~~~~~~~ 337 (352)
T PRK10084 314 ELGWKPQETFESGIRKTVEWYLAN 337 (352)
T ss_pred HcCCCCcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999875
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=306.19 Aligned_cols=306 Identities=25% Similarity=0.341 Sum_probs=240.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chhhhc--CCCceEEEEcccCCccc-------C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKKWI--GHPRFELIRHDVTEPLL-------I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~~d~~~~~~-------~ 93 (343)
++++|+||||||+||||++|++.|+++| ++|++++|....... ...... ...+++++.+|+.++.. .
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 4678999999999999999999999999 999999874322211 111111 12468899999988632 2
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
++|+|||+|+.........++...++.|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~ 155 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNP 155 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCH
Confidence 68999999986543334457778899999999999999999988 8999999999987767778888 57777889
Q ss_pred hHHhHHHHHHHHHHHHHH-hCCceEEEEeccccCCCCCC------C-CccHHHHHHHHHHcCC--CeEEec------CCc
Q 019309 173 YDEGKRVAETLMFDYHRQ-HGIQIRIARIFNTYGPRMNI------D-DGRVVSNFIAQALRGE--PLTVQK------PGT 236 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~-~~~~~~i~R~~~v~G~~~~~------~-~~~~~~~~~~~~~~~~--~~~~~~------~~~ 236 (343)
|+.+|..+|++++.+... .+++++++|++++||++... . ....+..++..+..++ .+.+++ ++.
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 235 (352)
T PLN02240 156 YGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGT 235 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCC
Confidence 999999999999988754 47899999999999975321 1 0122333445555443 345554 567
Q ss_pred eeEeeeehHHHHHHHHHHHhcC----C--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHH
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGE----N--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKA 310 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~----~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
+.++|||++|+|++++.+++.. . +++||+++++.+|++|+++.+.+.+|.+.++...+..+........|++|+
T Consensus 236 ~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 315 (352)
T PLN02240 236 GVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKA 315 (352)
T ss_pred EEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHH
Confidence 8899999999999999888642 2 469999999999999999999999998777766655444445556799999
Q ss_pred HHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 311 KELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 311 ~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
+++|||+|+++++|+|+++++|++++.
T Consensus 316 ~~~lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 316 EKELGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999998874
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=328.97 Aligned_cols=303 Identities=29% Similarity=0.429 Sum_probs=243.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEecCCCC-CccchhhhcCCCceEEEEcccCCccc-------CCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTG-SKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~v 98 (343)
..|+|||||||||||++|++.|+++| .++|++++|.... ....+.......+++++.+|+.|... .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 46899999999999999999999984 2789988874211 11111111123578999999998632 479999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCC---CCCCCCCCCCCCCCCCch
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHP---QPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~---~~e~~~~~~~~~~~~~~Y 173 (343)
||+|+.........++.+.++.|+.++.+++++|++.+ + ||||+||..+||.....+ ..|+ .+..|.++|
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~Y 159 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNPY 159 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCCc
Confidence 99999765544455677888999999999999999987 6 899999999999764432 2344 456677889
Q ss_pred HHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHH
Q 019309 174 DEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR 253 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~ 253 (343)
+.+|..+|++++.+..+.+++++++||++||||+... ..++..++..+..++.+.+++++.+.+++||++|+|+++..
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~--~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP--EKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc--ccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 9999999999999988889999999999999998532 35677788888888889888888899999999999999999
Q ss_pred HHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc--eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHH
Q 019309 254 LMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIE--IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330 (343)
Q Consensus 254 ~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~ 330 (343)
++++.. +++||+++++.+++.|+++.+.+.+|.+.. +...+..+.......+|++|++ +|||+|+++++|++++++
T Consensus 238 ~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~p~~~~~egl~~~i 316 (668)
T PLN02260 238 VLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQERTSWEEGLKKTM 316 (668)
T ss_pred HHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCCCCCCHHHHHHHHH
Confidence 998765 679999999999999999999999987543 3333333333445568999997 599999999999999999
Q ss_pred HHHHHhhC
Q 019309 331 EDFRSRLG 338 (343)
Q Consensus 331 ~~~~~~~~ 338 (343)
+||+++..
T Consensus 317 ~w~~~~~~ 324 (668)
T PLN02260 317 EWYTSNPD 324 (668)
T ss_pred HHHHhChh
Confidence 99987643
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=302.56 Aligned_cols=297 Identities=21% Similarity=0.292 Sum_probs=223.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc-hhhhcC-CCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN-LKKWIG-HPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
++|+||||||+||||++|++.|+++| ++|+++.|........ +..... ..+++++.+|+.+.. +.++|+|||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 56899999999999999999999999 9999999854321111 111111 135888999998863 447999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC-cccCCCCC---CCCCCCCCCCCC-CCCCCCchH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLI---HPQPETYWGNVN-PIGVRSCYD 174 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~-~v~~~~~~---~~~~e~~~~~~~-~~~~~~~Y~ 174 (343)
+|+.. ..++...++.|+.++.+++++|++.++ ||||+||. .+||.... .+++|+.|...+ +..+.+.|+
T Consensus 88 ~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 88 TASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred ecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHH
Confidence 99854 245678899999999999999999998 89999996 58875432 247787653322 444667899
Q ss_pred HhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
.+|..+|++++.+.++++++++++||++||||+........+..++ ....++... . +++.++|||++|+|++++.+
T Consensus 163 ~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~--~~~~~~~i~V~Dva~a~~~a 238 (342)
T PLN02214 163 YGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y--ANLTQAYVDVRDVALAHVLV 238 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C--CCCCcCeeEHHHHHHHHHHH
Confidence 9999999999999888899999999999999986432222233333 334454332 2 24578999999999999999
Q ss_pred HhcCC-CcceEecCCCccCHHHHHHHHHHHhCC-CcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHH
Q 019309 255 MEGEN-TGPVNIGNPGEFTMLELAETVKELINP-GIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332 (343)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~ 332 (343)
++++. ++.||+++ ..+++.|+++.+.+.++. +.+....+..........+|++|++ +|||+|+ +++|+|+++++|
T Consensus 239 l~~~~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LG~~p~-~lee~i~~~~~~ 315 (342)
T PLN02214 239 YEAPSASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIK-DLGLEFT-STKQSLYDTVKS 315 (342)
T ss_pred HhCcccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHH-HcCCccc-CHHHHHHHHHHH
Confidence 99765 67999987 578999999999999852 2121111111222334468999998 5999995 999999999999
Q ss_pred HHHhh
Q 019309 333 FRSRL 337 (343)
Q Consensus 333 ~~~~~ 337 (343)
|++..
T Consensus 316 ~~~~~ 320 (342)
T PLN02214 316 LQEKG 320 (342)
T ss_pred HHHcC
Confidence 98764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=298.82 Aligned_cols=272 Identities=19% Similarity=0.150 Sum_probs=220.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----C--CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~vi~~a 102 (343)
|+||||||+||||++|++.|+++| + |++++|.. ..+.+|+.|... . ++|+|||||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~-V~~~~~~~----------------~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A 62 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-N-LIALDVHS----------------TDYCGDFSNPEGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-C-EEEecccc----------------ccccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 689999999999999999999998 4 88887631 123578877632 1 589999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
+...+..+..++...+..|+.++.+++++|++.+++|||+||..||+.....+++|+ ++..|.++|+.+|..+|+
T Consensus 63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK~~~E~ 137 (299)
T PRK09987 63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETKLAGEK 137 (299)
T ss_pred ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHHHHHHH
Confidence 987766667788888899999999999999999999999999999988777788888 677888899999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC--CceeEeeeehHHHHHHHHHHHhcCC-
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP--GTQTRSFCYVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~D~a~~i~~~~~~~~- 259 (343)
++..+ ..+++|+|++++|||+. ..++..++..+..++.+.++++ +.+.+.+.+++|+++++..++++..
T Consensus 138 ~~~~~----~~~~~ilR~~~vyGp~~----~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 209 (299)
T PRK09987 138 ALQEH----CAKHLIFRTSWVYAGKG----NNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEV 209 (299)
T ss_pred HHHHh----CCCEEEEecceecCCCC----CCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCC
Confidence 98765 34679999999999963 3567778888888888888876 4555556677888888888876644
Q ss_pred CcceEecCCCccCHHHHHHHHHHHh---CCCc---ceEEcc-----CCCCCCCccccChHHHHHhcCCcccccHHhHHHH
Q 019309 260 TGPVNIGNPGEFTMLELAETVKELI---NPGI---EIKMVE-----NTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 328 (343)
Q Consensus 260 ~~~~~~~~~~~~s~~e~~~~i~~~~---g~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~ 328 (343)
.|+||+++++.+|+.|+++.+.+.+ |.+. .+...+ ....++....+|++|+++.|||+|. +|+|+|++
T Consensus 210 ~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~ 288 (299)
T PRK09987 210 AGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVKR 288 (299)
T ss_pred CCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHHH
Confidence 6899999999999999999998864 3332 122222 2234566778999999999999987 99999999
Q ss_pred HHHHH
Q 019309 329 MEEDF 333 (343)
Q Consensus 329 ~~~~~ 333 (343)
+++.+
T Consensus 289 ~~~~~ 293 (299)
T PRK09987 289 MLTEL 293 (299)
T ss_pred HHHHH
Confidence 99865
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=296.45 Aligned_cols=301 Identities=33% Similarity=0.493 Sum_probs=239.9
Q ss_pred EEEEEcCchhHHHHHHHHHHhcC-CCeEEEEecCCCC-CccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEe
Q 019309 31 RILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTG-SKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL 101 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~ 101 (343)
+|||||||||||++++++|+++| .++|++++|.... ..+.+.......+++++.+|+.++. +. ++|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 59999999999999999999987 3678888763211 1122222222346888999999873 22 38999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC--CeEEEEeCCcccCCCCCC-CCCCCCCCCCCCCCCCCchHHhHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIH-PQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~--~r~i~~SS~~v~~~~~~~-~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
|+.........++...++.|+.++.+++++|.+.+ +++|++||.++||..... +..|+ .+..|.+.|+.+|.
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 155 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKA 155 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCchHHHHH
Confidence 98765444455677888999999999999999864 499999999999875443 56676 56667788999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+|.+++.++.+.+++++++||+.+|||.... ..++..++..+..++.+++++++++.++++|++|+|+++..++++.
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 156 ASDHLVRAYHRTYGLPALITRCSNNYGPYQFP--EKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCCc--ccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 99999999988889999999999999997532 3577788888888888888888888999999999999999999876
Q ss_pred C-CcceEecCCCccCHHHHHHHHHHHhCCCcce-EEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHh
Q 019309 259 N-TGPVNIGNPGEFTMLELAETVKELINPGIEI-KMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 259 ~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~ 336 (343)
. +++||+++++.+++.|+++.+.+.++.+... ...+..+.......+|.+|++++|||+|+++++++++++++||+++
T Consensus 234 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~ 313 (317)
T TIGR01181 234 RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313 (317)
T ss_pred CCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhc
Confidence 5 5699999999999999999999999864322 2222222222234579999999999999989999999999999776
Q ss_pred hC
Q 019309 337 LG 338 (343)
Q Consensus 337 ~~ 338 (343)
..
T Consensus 314 ~~ 315 (317)
T TIGR01181 314 EW 315 (317)
T ss_pred cC
Confidence 43
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=294.77 Aligned_cols=284 Identities=21% Similarity=0.281 Sum_probs=215.5
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc---------c-----cCCCCE
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP---------L-----LIEVDQ 97 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~-----~~~~d~ 97 (343)
||||||+||||++|+++|+++| ++++++.|....... .. .+..+|+.|. . ..++|+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~~~~~-~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~ 71 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK-FV--------NLVDLDIADYMDKEDFLAQIMAGDDFGDIEA 71 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCCcchH-HH--------hhhhhhhhhhhhHHHHHHHHhcccccCCccE
Confidence 8999999999999999999999 866666553221110 00 1112233221 1 126999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
|||+|+..... ..++...++.|+.++.+++++|++.+++|||+||.++||.....+.+|+ .+..|.++|+.+|
T Consensus 72 Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK 144 (308)
T PRK11150 72 IFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSK 144 (308)
T ss_pred EEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHH
Confidence 99999854422 2345567899999999999999999889999999999997655566666 5667778899999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEe-cCCceeEeeeehHHHHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQ-KPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
..+|+.++.+..+.+++++++||+++|||+..... ......+...+.+++.+.++ +++...++++|++|+|++++.+
T Consensus 145 ~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~ 224 (308)
T PRK11150 145 FLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWF 224 (308)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHH
Confidence 99999999998888999999999999999854321 23444566777777765555 4556789999999999999999
Q ss_pred HhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC----CCCccccChHHHHHhcCCcccc-cHHhHHHHH
Q 019309 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD----DPRQRKPDISKAKELLGWEPKV-KLRDGLPLM 329 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~ 329 (343)
+++..++.||+++++.+|+.|+++.+.+.++.. .+...+.... ......+|.+|+++ +||+|+. +++|+|+++
T Consensus 225 ~~~~~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~ 302 (308)
T PRK11150 225 WENGVSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEY 302 (308)
T ss_pred HhcCCCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-cCCCCCCCCHHHHHHHH
Confidence 987667899999999999999999999999742 2222221111 11234679999986 7999874 999999999
Q ss_pred HHHHH
Q 019309 330 EEDFR 334 (343)
Q Consensus 330 ~~~~~ 334 (343)
++|+.
T Consensus 303 ~~~~~ 307 (308)
T PRK11150 303 MAWLN 307 (308)
T ss_pred HHHhh
Confidence 99974
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=293.10 Aligned_cols=287 Identities=27% Similarity=0.334 Sum_probs=224.9
Q ss_pred EEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-------cCCCCEEEEecCCC
Q 019309 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPA 105 (343)
Q Consensus 33 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~d~vi~~a~~~ 105 (343)
||||||||||++|++.|+++| ++|+++.+. ..+|+.+.. ..++|+|||||+..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g-~~v~~~~~~-------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~ 60 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG-FTNLVLRTH-------------------KELDLTRQADVEAFFAKEKPTYVILAAAKV 60 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC-CcEEEeecc-------------------ccCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence 699999999999999999999 777665431 135666542 22589999999865
Q ss_pred Cc-cccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC-chHHhHHHHHH
Q 019309 106 SP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS-CYDEGKRVAET 182 (343)
Q Consensus 106 ~~-~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~~K~~~E~ 182 (343)
.. .....++.+.++.|+.++.+++++|++.++ +|||+||..||+.....+++|+++.. .+..|.+ .|+.+|.++|+
T Consensus 61 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~e~ 139 (306)
T PLN02725 61 GGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAKIAGIK 139 (306)
T ss_pred cccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHHHHHHH
Confidence 42 223356677889999999999999999998 89999999999977677888875321 1334433 49999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHH----HHHcCCCeEE-ecCCceeEeeeehHHHHHHHHHHH
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIA----QALRGEPLTV-QKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+++.+.+..+++++++||+.+|||+.... .+..+..++. ....+.++.+ ++++.+.+++||++|++++++.++
T Consensus 140 ~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~ 219 (306)
T PLN02725 140 MCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLM 219 (306)
T ss_pred HHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHH
Confidence 99999888899999999999999975321 1234444443 3345555555 677888999999999999999999
Q ss_pred hcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 256 EGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 256 ~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
+... .+.||+++++.+|+.|+++.+.+.++.+..+...+..........+|.+|++ .+||+|+++++|+|+++++|++
T Consensus 220 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~ 298 (306)
T PLN02725 220 RRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SLGWDPKFSLKDGLQETYKWYL 298 (306)
T ss_pred hccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-HhCCCCCCCHHHHHHHHHHHHH
Confidence 8754 5789999999999999999999999876666554333333334568999997 5999999999999999999999
Q ss_pred HhhCCCC
Q 019309 335 SRLGVPK 341 (343)
Q Consensus 335 ~~~~~~~ 341 (343)
++.+.+.
T Consensus 299 ~~~~~~~ 305 (306)
T PLN02725 299 ENYETGG 305 (306)
T ss_pred hhhhccC
Confidence 9887653
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=293.27 Aligned_cols=301 Identities=25% Similarity=0.363 Sum_probs=232.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCccc-------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPLL-------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~-------~~~d~vi~ 100 (343)
|+||||||+||||++|++.|+++| ++|++++|............ ....++.++.+|+.|... .++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh 79 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH 79 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence 689999999999999999999999 99999876432222111111 122356788999987732 25999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC-CCCCchHHhHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI-GVRSCYDEGKR 178 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~-~~~~~Y~~~K~ 178 (343)
+|+..........+...+..|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+. .|.+.|+.+|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~-----~~~~~p~~~Y~~sK~ 154 (338)
T PRK10675 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVES-----FPTGTPQSPYGKSKL 154 (338)
T ss_pred CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccc-----cCCCCCCChhHHHHH
Confidence 9986543333445667889999999999999999998 8999999999987666677787 343 56788999999
Q ss_pred HHHHHHHHHHHHh-CCceEEEEeccccCCCCC----CCC----ccHHHHHHHHHHcCC--CeEEec------CCceeEee
Q 019309 179 VAETLMFDYHRQH-GIQIRIARIFNTYGPRMN----IDD----GRVVSNFIAQALRGE--PLTVQK------PGTQTRSF 241 (343)
Q Consensus 179 ~~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~~----~~~----~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~ 241 (343)
.+|++++.+++.. +++++++|++.+||+... +.. ..++ .++..+..++ .+.+++ ++.+.+++
T Consensus 155 ~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (338)
T PRK10675 155 MVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233 (338)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEee
Confidence 9999999987653 789999999999997421 111 1223 3344444443 244443 46788999
Q ss_pred eehHHHHHHHHHHHhcC---C-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCc
Q 019309 242 CYVSDMVDGLIRLMEGE---N-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWE 317 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~---~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (343)
||++|+|++++.+++.. . +++||+++++.+|+.|+++.+.+.+|.+..+...+.........++|.+|+++++||+
T Consensus 234 v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~ 313 (338)
T PRK10675 234 IHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWR 313 (338)
T ss_pred EEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCC
Confidence 99999999999999752 2 4699999999999999999999999987766655544444455678999999999999
Q ss_pred ccccHHhHHHHHHHHHHHhh
Q 019309 318 PKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 318 p~~~~~e~l~~~~~~~~~~~ 337 (343)
|+++++++|+++++|++++.
T Consensus 314 p~~~~~~~~~~~~~~~~~~~ 333 (338)
T PRK10675 314 VTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_pred CcCcHHHHHHHHHHHHHhhh
Confidence 99999999999999998764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=292.52 Aligned_cols=302 Identities=19% Similarity=0.246 Sum_probs=221.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc--hhhhcCCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN--LKKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
.+|+||||||+||||++|+++|+++| ++|+++.|........ ........+++++.+|+.|.. +.++|+|||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999 9999888853221110 011111136889999999863 347999999
Q ss_pred ecCCCCccccccChH-HHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccCCC----CCCCCCCCCCCC----CCCCCC
Q 019309 101 LACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP----LIHPQPETYWGN----VNPIGV 169 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~-~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~~~----~~~~~~e~~~~~----~~~~~~ 169 (343)
+|+... ....++. ..++.|+.++.++++++.+. ++ |||++||.++|+.. .+.+.+|+.+.. ..+..|
T Consensus 87 ~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p 164 (338)
T PLN00198 87 VATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP 164 (338)
T ss_pred eCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence 998642 2223333 46789999999999999886 46 99999999999853 233456654321 123346
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec-CCc----eeEeeeeh
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK-PGT----QTRSFCYV 244 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~v~v 244 (343)
.++|+.+|..+|.+++.+..+++++++++||++||||+.......++. ++..+..++.+.+.+ .+. +.++|+|+
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V 243 (338)
T PLN00198 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-LAMSLITGNEFLINGLKGMQMLSGSISITHV 243 (338)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH-HHHHHHcCCccccccccccccccCCcceeEH
Confidence 678999999999999999988899999999999999986433223332 334556666555543 222 23799999
Q ss_pred HHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC-CcceEEccCCCCCCCccccChHHHHHhcCCcccccH
Q 019309 245 SDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP-GIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKL 322 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 322 (343)
+|+|++++.+++... .+.| ++++..+++.|+++.+.+.++. +.+....+. + ......+|.+|+++ +||+|++++
T Consensus 244 ~D~a~a~~~~~~~~~~~~~~-~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~k~~~-~G~~p~~~l 319 (338)
T PLN00198 244 EDVCRAHIFLAEKESASGRY-ICCAANTSVPELAKFLIKRYPQYQVPTDFGDF-P-SKAKLIISSEKLIS-EGFSFEYGI 319 (338)
T ss_pred HHHHHHHHHHhhCcCcCCcE-EEecCCCCHHHHHHHHHHHCCCCCCCcccccc-C-CCCccccChHHHHh-CCceecCcH
Confidence 999999999998765 5677 5666789999999999998853 222222111 1 12234679999987 699999999
Q ss_pred HhHHHHHHHHHHHhh
Q 019309 323 RDGLPLMEEDFRSRL 337 (343)
Q Consensus 323 ~e~l~~~~~~~~~~~ 337 (343)
+|+|+++++||+++.
T Consensus 320 ~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 320 EEIYDQTVEYFKAKG 334 (338)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998754
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=289.13 Aligned_cols=300 Identities=18% Similarity=0.231 Sum_probs=222.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcc-----cCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPL-----LIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~-----~~~~d~ 97 (343)
..+|+||||||+||||++|+++|+++| ++|+++.|....... ..... ...+++++.+|+.+.. +.++|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKK-TDHLLALDGAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCCcchhh-HHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 357999999999999999999999999 999988875432211 11111 1246889999999874 336999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccCCCC-----CCCCCCCCCCCCCC-CCC
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL-----IHPQPETYWGNVNP-IGV 169 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~~~~-----~~~~~e~~~~~~~~-~~~ 169 (343)
|||+||.........++...++.|+.++.+++++|.+. ++ +||++||.++|+... ..+++|+.+..... ..+
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 99999865433333455678899999999999999885 45 899999998876432 33567774322111 112
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.++|+.+|..+|++++.+.++++++++++||+++|||+..+. ..+...++..+..++.+. + .+.++|+|++|+|+
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~-~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~ 235 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPT-LNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVAL 235 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCC-CCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHH
Confidence 467999999999999999888899999999999999986543 224445566666665432 2 24578999999999
Q ss_pred HHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC--CCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 250 GLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT--PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
+++.+++.+. .+.||++ ++.+|+.|+++.+.+.++. ..+...+.. .........|.+|+++ |||.|.++++|+|
T Consensus 236 a~~~~l~~~~~~~~~ni~-~~~~s~~ei~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~-lg~~p~~~l~~gi 312 (325)
T PLN02989 236 AHVKALETPSANGRYIID-GPVVTIKDIENVLREFFPD-LCIADRNEDITELNSVTFNVCLDKVKS-LGIIEFTPTETSL 312 (325)
T ss_pred HHHHHhcCcccCceEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCCCCCcccccccCcCCCHHHHHH-cCCCCCCCHHHHH
Confidence 9999998765 6799995 5689999999999999963 221111111 1111245678999886 9999999999999
Q ss_pred HHHHHHHHHh
Q 019309 327 PLMEEDFRSR 336 (343)
Q Consensus 327 ~~~~~~~~~~ 336 (343)
+++++||++.
T Consensus 313 ~~~~~~~~~~ 322 (325)
T PLN02989 313 RDTVLSLKEK 322 (325)
T ss_pred HHHHHHHHHh
Confidence 9999999754
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=291.69 Aligned_cols=306 Identities=21% Similarity=0.241 Sum_probs=216.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
.+|+||||||+||||++++++|+++| ++|++++|................+++++.+|+.+.. +.++|+|||+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 56899999999999999999999999 9999988853222111111112246889999998863 34799999999
Q ss_pred CCCCccc--cccChHH-----HHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCC-----CCCCCCCCCCC----
Q 019309 103 CPASPIF--YKYNPVK-----TIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLI-----HPQPETYWGNV---- 164 (343)
Q Consensus 103 ~~~~~~~--~~~~~~~-----~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~-----~~~~e~~~~~~---- 164 (343)
+...... ...++.. .++.|+.++.+++++|++.+ + +||++||.++||.... .+++|+.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~ 167 (353)
T PLN02896 88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVW 167 (353)
T ss_pred ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhh
Confidence 8764332 2233433 34556799999999999875 6 8999999999985321 34566522111
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe--EEecC---CceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL--TVQKP---GTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~ 239 (343)
.+..+.++|+.+|.++|++++.+.++++++++++||++||||+.......++..++. ...|... ...+. ..+.+
T Consensus 168 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 246 (353)
T PLN02896 168 NTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLS-PITGDSKLFSILSAVNSRMGSI 246 (353)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHH-HhcCCccccccccccccccCce
Confidence 012344589999999999999999888999999999999999864322233333332 2234321 11111 11246
Q ss_pred eeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCC-cceEEccCCCCCCCccccChHHHHHhcCCc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPG-IEIKMVENTPDDPRQRKPDISKAKELLGWE 317 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (343)
+|||++|+|++++.+++.+. .+.|+ ++++.+++.|+++.+.+.++.. ..+...+...... ....|.++++. |||+
T Consensus 247 dfi~v~Dva~a~~~~l~~~~~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-lGw~ 323 (353)
T PLN02896 247 ALVHIEDICDAHIFLMEQTKAEGRYI-CCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSI-PSEISSKKLRD-LGFE 323 (353)
T ss_pred eEEeHHHHHHHHHHHHhCCCcCccEE-ecCCCCCHHHHHHHHHHhCCCCCccccccccccCcc-ccccCHHHHHH-cCCC
Confidence 99999999999999998765 56775 5678899999999999998632 2222222211111 23568888875 9999
Q ss_pred ccccHHhHHHHHHHHHHHhhC
Q 019309 318 PKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 318 p~~~~~e~l~~~~~~~~~~~~ 338 (343)
|+++++++|+++++||++...
T Consensus 324 p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 324 YKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred ccCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999988754
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=282.67 Aligned_cols=297 Identities=39% Similarity=0.535 Sum_probs=238.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----CCC-CEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----IEV-DQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-d~vi~~a~ 103 (343)
|+|||||||||||++|++.|+++| ++|++++|......... ..++++.+|+++... .++ |+|||+|+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 459999999999999999999999 99999998543322211 467888888877532 245 99999998
Q ss_pred CCCcccccc-ChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 104 PASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 104 ~~~~~~~~~-~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
......... ++...+..|+.++.+++++|++.++ ||||.||.++|+.. ...+.+|+. .+..|.++|+.+|..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~ 149 (314)
T COG0451 74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAA 149 (314)
T ss_pred cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHH
Confidence 765433333 4567899999999999999999888 89998888887765 333677763 3555556899999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCc-cHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG-RVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
|+.+..+....+++++++||+.||||+...... .+...++.....+.. +.+.+++...++++|++|++++++.+++++
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 229 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENP 229 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCC
Confidence 999999998789999999999999998654322 355566777777776 666667778899999999999999999987
Q ss_pred CCcceEecCCC-ccCHHHHHHHHHHHhCCCcc-eEEccC--CCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 259 NTGPVNIGNPG-EFTMLELAETVKELINPGIE-IKMVEN--TPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 259 ~~~~~~~~~~~-~~s~~e~~~~i~~~~g~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
..+.||++++. .++++|+++.+.+.+|.+.. +...+. .........+|..+++++|||.|..++++++.++++|+.
T Consensus 230 ~~~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~ 309 (314)
T COG0451 230 DGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLL 309 (314)
T ss_pred CCcEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 75599999997 99999999999999998766 444442 333334557799999999999999899999999999987
Q ss_pred Hhh
Q 019309 335 SRL 337 (343)
Q Consensus 335 ~~~ 337 (343)
...
T Consensus 310 ~~~ 312 (314)
T COG0451 310 KKL 312 (314)
T ss_pred Hhh
Confidence 654
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=287.10 Aligned_cols=267 Identities=28% Similarity=0.395 Sum_probs=205.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~d~vi~~a 102 (343)
|||||+||+|+||++|++.|.++| ++|+.+.|. ..|+.|.. ..++|+|||||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccc
Confidence 899999999999999999999999 999998763 44555542 12699999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
+...+..++.++...+.+|+.++.+|+++|.+.++++||+||..||+...+.++.|+ ++..|.+.||++|.++|+
T Consensus 60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~YG~~K~~~E~ 134 (286)
T PF04321_consen 60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVYGRSKLEGEQ 134 (286)
T ss_dssp ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHHHHHHHHHHH
T ss_pred eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999988888889999 688889999999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCC--
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT-- 260 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~-- 260 (343)
.++.. ..++.|+|++++||+. ...++..++..+..++.+.+.. +..+++++++|+|+++..++++...
T Consensus 135 ~v~~~----~~~~~IlR~~~~~g~~----~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~~~ 204 (286)
T PF04321_consen 135 AVRAA----CPNALILRTSWVYGPS----GRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLSGA 204 (286)
T ss_dssp HHHHH-----SSEEEEEE-SEESSS----SSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH-G
T ss_pred HHHHh----cCCEEEEecceecccC----CCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhccccc
Confidence 99864 3489999999999994 3578888999999999888754 5788999999999999999998765
Q ss_pred ---cceEecCCCccCHHHHHHHHHHHhCCCc-ceEEccC-----CCCCCCccccChHHHHHhcCCcccccHHhHHHHHHH
Q 019309 261 ---GPVNIGNPGEFTMLELAETVKELINPGI-EIKMVEN-----TPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEE 331 (343)
Q Consensus 261 ---~~~~~~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~ 331 (343)
|+||+++++.+|+.|+++.+.+.+|.+. .+...+. ....+....+|++|+++.||++++ +|+++|+++++
T Consensus 205 ~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~ 283 (286)
T PF04321_consen 205 SPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLEELVK 283 (286)
T ss_dssp GG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHHHHHH
T ss_pred ccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHHHHHH
Confidence 9999999999999999999999999776 4444322 223555668999999999999998 99999999998
Q ss_pred HH
Q 019309 332 DF 333 (343)
Q Consensus 332 ~~ 333 (343)
.|
T Consensus 284 ~~ 285 (286)
T PF04321_consen 284 QY 285 (286)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=273.71 Aligned_cols=301 Identities=21% Similarity=0.263 Sum_probs=226.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc--chhhhcC-CCceEEEEcccCCc-----ccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD--NLKKWIG-HPRFELIRHDVTEP-----LLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~d~~~~-----~~~~~d~vi 99 (343)
++|+|+|||||||||++|++.|+++| |.|++..|+...... .+.++.. ..+.+.+.+|+.|+ ++.+||.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence 67999999999999999999999999 999999997654222 2333322 34589999999987 455899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCC-----CCCCCCCCCCCCCCCCCCC-CC
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGD-----PLIHPQPETYWGNVNPIGV-RS 171 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~-----~~~~~~~e~~~~~~~~~~~-~~ 171 (343)
|+|.+....... .+.+++++.++|+.+++++|++.. + |+||+||.++-.. .....++|+.|++.+-... ..
T Consensus 84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~ 162 (327)
T KOG1502|consen 84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL 162 (327)
T ss_pred EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence 999877543322 455899999999999999999999 6 9999999887543 2444678888765553322 25
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
.|..+|..+|+.+++++.+.+++.+.+-|+.|+||...+. .......+...++|..-... .....|||++|+|++.
T Consensus 163 ~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~-l~~s~~~~l~~i~G~~~~~~---n~~~~~VdVrDVA~AH 238 (327)
T KOG1502|consen 163 WYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPS-LNSSLNALLKLIKGLAETYP---NFWLAFVDVRDVALAH 238 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccc-cchhHHHHHHHHhcccccCC---CCceeeEeHHHHHHHH
Confidence 7999999999999999999999999999999999986653 22333444556666433322 2344599999999999
Q ss_pred HHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC--CCCCCccccChHHHHHhcCCcccccHHhHHHH
Q 019309 252 IRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT--PDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 328 (343)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~ 328 (343)
+.++|++. .|.|.+.+ +..++.|+++.+.+.+. ...+...... ........++.+|++.+.|++.+ +++|.+.+
T Consensus 239 v~a~E~~~a~GRyic~~-~~~~~~ei~~~l~~~~P-~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~-~l~e~~~d 315 (327)
T KOG1502|consen 239 VLALEKPSAKGRYICVG-EVVSIKEIADILRELFP-DYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEETLSD 315 (327)
T ss_pred HHHHcCcccCceEEEec-CcccHHHHHHHHHHhCC-CCCCCCCCCccccccccccccccHHHHhcccceec-ChHHHHHH
Confidence 99999998 66666665 56669999999999983 3332211111 11222235799999985557776 99999999
Q ss_pred HHHHHHHhh
Q 019309 329 MEEDFRSRL 337 (343)
Q Consensus 329 ~~~~~~~~~ 337 (343)
+++++++..
T Consensus 316 t~~sl~~~~ 324 (327)
T KOG1502|consen 316 TVESLREKG 324 (327)
T ss_pred HHHHHHHhc
Confidence 999987764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=284.62 Aligned_cols=297 Identities=20% Similarity=0.236 Sum_probs=217.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcc-----cCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
.+|+||||||+||||++|+++|+++| ++|++++|...... ...... ...+++++.+|+.++. +.++|+|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPK-KTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchh-hHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 46899999999999999999999999 99999988543211 111111 1247889999999864 4579999
Q ss_pred EEecCCCCccccccChH-HHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcc--cCCC---CCCCCCCCCCCCCC-CCCC
Q 019309 99 YHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEV--YGDP---LIHPQPETYWGNVN-PIGV 169 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~-~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v--~~~~---~~~~~~e~~~~~~~-~~~~ 169 (343)
||+|+... ....++. ..++.|+.++.+++++|.+. ++ ||||+||.++ |+.. ...+++|+.+.... ....
T Consensus 81 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~ 158 (322)
T PLN02662 81 FHTASPFY--HDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES 158 (322)
T ss_pred EEeCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence 99998653 2223443 67899999999999999987 77 8999999864 6432 22346666321110 0111
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.+.|+.+|..+|++++.+.++++++++++||+++|||..... ......++..+..+... .+.+.++|||++|+|+
T Consensus 159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~ 233 (322)
T PLN02662 159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPT-LNTSAEAILNLINGAQT----FPNASYRWVDVRDVAN 233 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCC-CCchHHHHHHHhcCCcc----CCCCCcCeEEHHHHHH
Confidence 357999999999999999888899999999999999985432 12334445555555432 1236789999999999
Q ss_pred HHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEE-ccCCCCCCCccccChHHHHHhcCCcccccHHhHHH
Q 019309 250 GLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKM-VENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
+++.+++.+. .+.||++ ++.+++.|+++.+.+.++.. .+.. .............|.+|+++ |||++. +++++|+
T Consensus 234 a~~~~~~~~~~~~~~~~~-g~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~~~-~~~~~l~ 309 (322)
T PLN02662 234 AHIQAFEIPSASGRYCLV-ERVVHYSEVVKILHELYPTL-QLPEKCADDKPYVPTYQVSKEKAKS-LGIEFI-PLEVSLK 309 (322)
T ss_pred HHHHHhcCcCcCCcEEEe-CCCCCHHHHHHHHHHHCCCC-CCCCCCCCccccccccccChHHHHH-hCCccc-cHHHHHH
Confidence 9999999765 6789887 57899999999999987631 1111 01111123345689999995 999975 9999999
Q ss_pred HHHHHHHHhh
Q 019309 328 LMEEDFRSRL 337 (343)
Q Consensus 328 ~~~~~~~~~~ 337 (343)
++++||+++.
T Consensus 310 ~~~~~~~~~~ 319 (322)
T PLN02662 310 DTVESLKEKG 319 (322)
T ss_pred HHHHHHHHcC
Confidence 9999998654
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=283.01 Aligned_cols=289 Identities=24% Similarity=0.293 Sum_probs=224.7
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc---------cCCCCEEEEe
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL---------LIEVDQIYHL 101 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~d~vi~~ 101 (343)
|||||||||||+++++.|.++| + +|.+++|.... ..+... ....+..|+.+.. +.++|+|||+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g-~~~v~~~~~~~~~--~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~ 73 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERG-ITDILVVDNLRDG--HKFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQ 73 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcC-CceEEEEecCCCc--hhhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEEC
Confidence 6999999999999999999999 6 78888764321 111111 1134556666542 1479999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|+... ....++...++.|+.++.+++++|++.+++|||+||.++|+.... +..|+. .+..|.+.|+.+|..+|
T Consensus 74 A~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~~~e~~----~~~~p~~~Y~~sK~~~e 146 (314)
T TIGR02197 74 GACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEA-GFREGR----ELERPLNVYGYSKFLFD 146 (314)
T ss_pred ccccC--ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCC-Cccccc----CcCCCCCHHHHHHHHHH
Confidence 98643 234567778899999999999999999889999999999987543 455552 23456778999999999
Q ss_pred HHHHHHHHH--hCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEe------cCCceeEeeeehHHHHHHH
Q 019309 182 TLMFDYHRQ--HGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQ------KPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 182 ~~~~~~~~~--~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~v~D~a~~i 251 (343)
..++++..+ .+++++++||+.+|||+..... ..++..++..+..++.+.++ +++.+.++++|++|+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i 226 (314)
T TIGR02197 147 QYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVN 226 (314)
T ss_pred HHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHH
Confidence 999875432 3579999999999999854321 34667788888888877664 3566779999999999999
Q ss_pred HHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC----CCCccccChHHHHHhcCCcccccHHhHHH
Q 019309 252 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD----DPRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
..+++....++||+++++++|+.|+++.+.+.+|.+..+...+.... ......+|.+|+++++||.|+++++|+++
T Consensus 227 ~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~ 306 (314)
T TIGR02197 227 LWLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTLEEGVK 306 (314)
T ss_pred HHHHhcccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccHHHHHH
Confidence 99999855789999999999999999999999997765554433221 11234689999999999999999999999
Q ss_pred HHHHHHH
Q 019309 328 LMEEDFR 334 (343)
Q Consensus 328 ~~~~~~~ 334 (343)
++++|++
T Consensus 307 ~~~~~~~ 313 (314)
T TIGR02197 307 DYVQWLL 313 (314)
T ss_pred HHHHHHh
Confidence 9999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=286.96 Aligned_cols=300 Identities=21% Similarity=0.274 Sum_probs=214.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcc-----cCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
.+|+||||||+||||++|+++|+++| ++|++++|..... ........ ..++.++.+|+.+.. +.++|+|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANV-KKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchh-HHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 35899999999999999999999999 9999998853221 11111111 125788999998763 3479999
Q ss_pred EEecCCCCccccccCh-HHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCC-CCCC-CCCCCCCCC----CCCCC
Q 019309 99 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDP-LIHP-QPETYWGNV----NPIGV 169 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~-~~~~-~~e~~~~~~----~~~~~ 169 (343)
||+|+.... ...++ ...++.|+.++.+++++|++.+ + ||||+||.++|+.. ...+ ++|+.+... .+..+
T Consensus 82 iH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 82 FHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 999986431 22233 4678999999999999999987 5 89999999877643 2233 466643211 12234
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
.++|+.+|..+|.+++.+.+++|++++++||+++|||+..... ..++.. + ....++... .+. .+.++|+|++|+|
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~-~-~~~~~~~~~-~~~-~~~r~~v~V~Dva 235 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITA-L-SLITGNEAH-YSI-IKQGQFVHLDDLC 235 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHH-H-HHhcCCccc-cCc-CCCcceeeHHHHH
Confidence 4689999999999999999888999999999999999864321 112221 1 122333221 221 2347999999999
Q ss_pred HHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCC-cceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 249 DGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPG-IEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 249 ~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
++++.+++++. .+.| +++++.+|+.|+++.+.+.++.. .+.. .+...........|.++++ +|||+|+++++|+|
T Consensus 236 ~a~~~~l~~~~~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~~-~lG~~p~~~l~egl 312 (351)
T PLN02650 236 NAHIFLFEHPAAEGRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FPGIDEDLKSVEFSSKKLT-DLGFTFKYSLEDMF 312 (351)
T ss_pred HHHHHHhcCcCcCceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CCCcCcccccccCChHHHH-HhCCCCCCCHHHHH
Confidence 99999998765 5677 66778899999999999987521 1111 1111123334456888875 69999999999999
Q ss_pred HHHHHHHHHhhC
Q 019309 327 PLMEEDFRSRLG 338 (343)
Q Consensus 327 ~~~~~~~~~~~~ 338 (343)
+++++||++...
T Consensus 313 ~~~i~~~~~~~~ 324 (351)
T PLN02650 313 DGAIETCREKGL 324 (351)
T ss_pred HHHHHHHHHcCC
Confidence 999999987643
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=283.19 Aligned_cols=300 Identities=29% Similarity=0.445 Sum_probs=233.2
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLAC 103 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~~a~ 103 (343)
+||||||+|+||+++++.|+++| ++|++++|................+++++.+|+.+... .++|+|||+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag 79 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG 79 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence 58999999999999999999999 99988876432222222221111257788999987742 26999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
.........++...+..|+.++.+++++|.+.++ +||++||.++|+.....+.+|+ .+..+.+.|+.+|..+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPYGRSKLMSER 154 (328)
T ss_pred ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCchHHHHHHHHH
Confidence 7644444456667889999999999999999988 8999999999987666677887 566677889999999999
Q ss_pred HHHHHHHH-hCCceEEEEeccccCCCCCCC-------CccHHHHHHHHHH-cCCCeEEec------CCceeEeeeehHHH
Q 019309 183 LMFDYHRQ-HGIQIRIARIFNTYGPRMNID-------DGRVVSNFIAQAL-RGEPLTVQK------PGTQTRSFCYVSDM 247 (343)
Q Consensus 183 ~~~~~~~~-~~~~~~i~R~~~v~G~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~D~ 247 (343)
.++.++.+ .+++++++||+.+||+..... ...++..+..... ....+.+++ ++...+++||++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99998876 789999999999999853211 1234444444443 233444432 45677899999999
Q ss_pred HHHHHHHHhcC----CCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCccccc-H
Q 019309 248 VDGLIRLMEGE----NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVK-L 322 (343)
Q Consensus 248 a~~i~~~~~~~----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~-~ 322 (343)
++++..+++.. .++.||+++++++|+.|+++.+.+.+|.+..+...+...........|.++++++|||+|+++ +
T Consensus 235 a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~l 314 (328)
T TIGR01179 235 ADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDL 314 (328)
T ss_pred HHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcchH
Confidence 99999999752 257999999999999999999999999887776555443334445679999999999999997 9
Q ss_pred HhHHHHHHHHHHHh
Q 019309 323 RDGLPLMEEDFRSR 336 (343)
Q Consensus 323 ~e~l~~~~~~~~~~ 336 (343)
+++++++++|++++
T Consensus 315 ~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 315 EIIIKTAWRWESRN 328 (328)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=279.93 Aligned_cols=295 Identities=21% Similarity=0.312 Sum_probs=217.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcc-----cCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
.+|+||||||+||||++++++|+++| ++|+++.|+..... ...... ...+++++.+|+.++. +.++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRK-KTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchH-HHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 46899999999999999999999999 99998888543221 111111 1246889999998874 3479999
Q ss_pred EEecCCCCccccccCh-HHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCccc--CCC---CCCCCCCCCCCCCC-CCCC
Q 019309 99 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LIHPQPETYWGNVN-PIGV 169 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~--~~~---~~~~~~e~~~~~~~-~~~~ 169 (343)
||+|+.... ...++ ...++.|+.++.+++++|++. ++ |||++||.++| +.. .+.+++|+.+.... +..+
T Consensus 82 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 159 (322)
T PLN02986 82 FHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRET 159 (322)
T ss_pred EEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcc
Confidence 999986432 12233 356899999999999999986 67 89999998865 322 23346777543211 1124
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.+.|+.+|..+|.+++.+.++++++++++||+++|||...+.. .+...++..+..++.+ ++ .+.+++||++|+|+
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~-~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~ 234 (322)
T PLN02986 160 KNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTL-NFSVELIVDFINGKNL--FN--NRFYRFVDVRDVAL 234 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCC-CccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHH
Confidence 5779999999999999999888999999999999999754321 2223455555666543 22 35678999999999
Q ss_pred HHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCc--cccChHHHHHhcCCcccccHHhHH
Q 019309 250 GLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ--RKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
+++.+++.+. ++.||++ ++.+|+.|+++.+.+.++ +..+... ........ ..+|.++++. |||+|+ +++|+|
T Consensus 235 a~~~al~~~~~~~~yni~-~~~~s~~e~~~~i~~~~~-~~~~~~~-~~~~~~~~~~~~~d~~~~~~-lg~~~~-~l~e~~ 309 (322)
T PLN02986 235 AHIKALETPSANGRYIID-GPIMSVNDIIDILRELFP-DLCIADT-NEESEMNEMICKVCVEKVKN-LGVEFT-PMKSSL 309 (322)
T ss_pred HHHHHhcCcccCCcEEEe-cCCCCHHHHHHHHHHHCC-CCCCCCC-CccccccccCCccCHHHHHH-cCCccc-CHHHHH
Confidence 9999999765 6799995 578999999999999986 2222211 11111112 2379999865 999998 999999
Q ss_pred HHHHHHHHHh
Q 019309 327 PLMEEDFRSR 336 (343)
Q Consensus 327 ~~~~~~~~~~ 336 (343)
+++++||++.
T Consensus 310 ~~~~~~~~~~ 319 (322)
T PLN02986 310 RDTILSLKEK 319 (322)
T ss_pred HHHHHHHHHc
Confidence 9999999774
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=261.47 Aligned_cols=265 Identities=26% Similarity=0.324 Sum_probs=229.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~~a 102 (343)
|+|||||++|++|.+|++.|. .+ ++|++++|.. .|++|+.. .++|+|||+|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIATDRAE--------------------LDITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc--------------------ccccChHHHHHHHHhhCCCEEEECc
Confidence 569999999999999999999 55 8999998731 56666532 2699999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
+...+..++.+++..+.+|..++.+++++|.+.|.++||+||.+||....+.++.|+ ++..|.+.||++|+++|+
T Consensus 59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888899999 788999999999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-Cc
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TG 261 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~ 261 (343)
.++.+ +.+..|+|.+++||.. ..+|...+++....++.+.+.. ++..+++++.|+|+++..+++... .+
T Consensus 134 ~v~~~----~~~~~I~Rtswv~g~~----g~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~~~~~~~ 203 (281)
T COG1091 134 AVRAA----GPRHLILRTSWVYGEY----GNNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEKEKEGG 203 (281)
T ss_pred HHHHh----CCCEEEEEeeeeecCC----CCCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHhccccCc
Confidence 99765 5789999999999986 3578888999999999888754 588899999999999999999876 66
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceE-Ec-----cCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHH
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIK-MV-----ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~ 332 (343)
+||+++...+||.|+++.|.+.++.+..+. .. +....++....+|+.|+++.+|++++ +|++.++.+++.
T Consensus 204 ~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 204 VYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 999999999999999999999998554332 11 22234555677999999999999998 899999998875
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=270.98 Aligned_cols=266 Identities=25% Similarity=0.296 Sum_probs=213.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----c--CCCCEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLAC 103 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~d~vi~~a~ 103 (343)
+|||+|||||||++++++|+++| ++|++++|. .+|+.+.. + .++|+|||+|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCc
Confidence 58999999999999999999999 999999873 24444431 1 24799999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
..........+...++.|+.++.+++++|++.+.+||++||.++|+.....+++|+ ++..+.+.|+.+|..+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~-----~~~~~~~~Y~~~K~~~E~~ 134 (287)
T TIGR01214 60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYRED-----DATNPLNVYGQSKLAGEQA 134 (287)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCC-----CCCCCcchhhHHHHHHHHH
Confidence 66543334456778899999999999999998889999999999987666778888 4566778899999999999
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC--CCc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE--NTG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~--~~~ 261 (343)
++.+ +++++++||+++||++. ...++..++..+..++++.+.+ +..++++|++|+|+++..+++.+ .++
T Consensus 135 ~~~~----~~~~~ilR~~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~v~Dva~a~~~~~~~~~~~~~ 205 (287)
T TIGR01214 135 IRAA----GPNALIVRTSWLYGGGG---GRNFVRTMLRLAGRGEELRVVD--DQIGSPTYAKDLARVIAALLQRLARARG 205 (287)
T ss_pred HHHh----CCCeEEEEeeecccCCC---CCCHHHHHHHHhhcCCCceEec--CCCcCCcCHHHHHHHHHHHHhhccCCCC
Confidence 8765 68999999999999973 2346667777777777777654 35689999999999999999875 378
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcc------eEEc-----cCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHH
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIE------IKMV-----ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~ 330 (343)
+||+++++.+|+.|+++.+.+.+|.+.. +... +..........+|++|++++|||++ ++++++|.+++
T Consensus 206 ~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~-~~~~~~l~~~~ 284 (287)
T TIGR01214 206 VYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPL-PHWREALRAYL 284 (287)
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCC-ccHHHHHHHHH
Confidence 9999999999999999999999987643 1111 1111222345789999999999955 49999999887
Q ss_pred HH
Q 019309 331 ED 332 (343)
Q Consensus 331 ~~ 332 (343)
+.
T Consensus 285 ~~ 286 (287)
T TIGR01214 285 QE 286 (287)
T ss_pred hh
Confidence 63
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=262.24 Aligned_cols=301 Identities=27% Similarity=0.399 Sum_probs=253.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCccc-------CCCCE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPLL-------IEVDQ 97 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~-------~~~d~ 97 (343)
.++||||||.||||+|.+.+|+++| +.|++++.......+.+.... +...+.++++|+.|..+ .++|.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 5789999999999999999999999 999999876555444443321 23689999999999743 36999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC-CCCchHH
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG-VRSCYDE 175 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~-~~~~Y~~ 175 (343)
|+|+|+...+..+-.+|..+...|+.++.++++.++++++ .+|+.||+.+||.+...|++|+ .+.. |.++|+.
T Consensus 81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~-----~~t~~p~~pyg~ 155 (343)
T KOG1371|consen 81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE-----DPTDQPTNPYGK 155 (343)
T ss_pred EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc-----CCCCCCCCcchh
Confidence 9999998888788889999999999999999999999999 8999999999999999999999 5665 8889999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccC--CCCCCCC------ccHHHHHHHHHHc---------CCCeEEecCCcee
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYG--PRMNIDD------GRVVSNFIAQALR---------GEPLTVQKPGTQT 238 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G--~~~~~~~------~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 238 (343)
+|...|+.+..+....++.++.+|..+++| |....+. .+..+ .+....- |..... .+++..
T Consensus 156 tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p-~v~~vaigr~~~l~v~g~d~~t-~dgt~v 233 (343)
T KOG1371|consen 156 TKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLP-YVFQVAIGRRPNLQVVGRDYTT-IDGTIV 233 (343)
T ss_pred hhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccc-cccchhhcccccceeecCcccc-cCCCee
Confidence 999999999999988889999999999999 5432221 11221 1111111 222222 256889
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhc
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 314 (343)
++++|+-|+|+....++.+.. .++||++.+...++.+|+.++++..|.+.++...+....+......+.++++++|
T Consensus 234 rdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~el 313 (343)
T KOG1371|consen 234 RDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQREL 313 (343)
T ss_pred ecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHh
Confidence 999999999999999998755 4699999999999999999999999999999998887777778888999999999
Q ss_pred CCcccccHHhHHHHHHHHHHHhh
Q 019309 315 GWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 315 g~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
||+|.+.++|+++++++|+.++.
T Consensus 314 gwk~~~~iee~c~dlw~W~~~np 336 (343)
T KOG1371|consen 314 GWKAKYGLQEMLKDLWRWQKQNP 336 (343)
T ss_pred CCccccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999987764
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=279.39 Aligned_cols=277 Identities=22% Similarity=0.254 Sum_probs=216.6
Q ss_pred CCCEEEEE----cCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh------hhcCCCceEEEEcccCCc--c--cC
Q 019309 28 SNMRILVT----GGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK------KWIGHPRFELIRHDVTEP--L--LI 93 (343)
Q Consensus 28 ~~~~ilIt----GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~~~d~~~~--~--~~ 93 (343)
++|+|||| |||||||++|++.|+++| |+|++++|.......... ..+...+++++.+|+.|. . ..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~ 129 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGA 129 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccC
Confidence 56899999 999999999999999999 999999996532111000 011123688999999763 1 23
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
++|+|||+++. +..++.+++++|++.|+ ||||+||.++|+.....+..|+ ++..|..
T Consensus 130 ~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~-----~~~~p~~- 187 (378)
T PLN00016 130 GFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG-----DAVKPKA- 187 (378)
T ss_pred CccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC-----CcCCCcc-
Confidence 79999998742 13457789999999999 8999999999997666666666 3444422
Q ss_pred hHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
+|..+|.+++ +.+++++++||+++|||... ..+...++..+..++++.+++++.+.++++|++|+|++++
T Consensus 188 ---sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~---~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~ 257 (378)
T PLN00016 188 ---GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNN---KDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFA 257 (378)
T ss_pred ---hHHHHHHHHH----HcCCCeEEEeceeEECCCCC---CchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHH
Confidence 7999998775 35899999999999999743 2345566777788888888788888999999999999999
Q ss_pred HHHhcCC--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC----------CCCCCccccChHHHHHhcCCcccc
Q 019309 253 RLMEGEN--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT----------PDDPRQRKPDISKAKELLGWEPKV 320 (343)
Q Consensus 253 ~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lg~~p~~ 320 (343)
.+++++. +++||+++++.+|+.|+++.+.+.+|.+..+...+.. +........|.+|++++|||+|++
T Consensus 258 ~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~p~~ 337 (378)
T PLN00016 258 LVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKF 337 (378)
T ss_pred HHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCCCCC
Confidence 9998754 6799999999999999999999999987654332211 111223456999999999999999
Q ss_pred cHHhHHHHHHHHHHHhh
Q 019309 321 KLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 321 ~~~e~l~~~~~~~~~~~ 337 (343)
+++|+|.++++||+.+.
T Consensus 338 ~l~egl~~~~~~~~~~~ 354 (378)
T PLN00016 338 DLVEDLKDRYELYFGRG 354 (378)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999998664
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=266.69 Aligned_cols=290 Identities=22% Similarity=0.310 Sum_probs=219.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a~~ 104 (343)
|+|+||||+||||+++++.|+++| ++|++++|..... .. +...+++++.+|+.+.. +.++|+|||+|+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~----~~-~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDR----RN-LEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD 74 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCccc----cc-cccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence 689999999999999999999999 9999999854321 11 12236889999998863 4479999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCC-CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~-~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
.. .+..++...++.|+.++.++++++.+.++ +||++||.++|+. ..+.+.+|+... .+..+...|+.+|..+|+
T Consensus 75 ~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~ 150 (328)
T TIGR03466 75 YR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQ 150 (328)
T ss_pred cc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHH
Confidence 42 23456778899999999999999999988 9999999999986 344567777321 111224579999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCc-
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG- 261 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~- 261 (343)
.++.+..+.+++++++||+.+||++.... .....++.....++.....+ ...+++|++|+|++++.++++...+
T Consensus 151 ~~~~~~~~~~~~~~ilR~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~D~a~a~~~~~~~~~~~~ 225 (328)
T TIGR03466 151 AALEMAAEKGLPVVIVNPSTPIGPRDIKP--TPTGRIIVDFLNGKMPAYVD---TGLNLVHVDDVAEGHLLALERGRIGE 225 (328)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCCCCCC--CcHHHHHHHHHcCCCceeeC---CCcceEEHHHHHHHHHHHHhCCCCCc
Confidence 99999888899999999999999974321 12233444444444332222 3368999999999999999886644
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC----------------CCCC-----------CccccChHHHHHhc
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENT----------------PDDP-----------RQRKPDISKAKELL 314 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------~~~~-----------~~~~~~~~~~~~~l 314 (343)
.|++ +++.+|+.|+++.+.+.+|.+......+.. ...+ ....+|.+|+++.|
T Consensus 226 ~~~~-~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 304 (328)
T TIGR03466 226 RYIL-GGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVREL 304 (328)
T ss_pred eEEe-cCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHHc
Confidence 5655 578999999999999999976443322210 0111 23467999999999
Q ss_pred CCcccccHHhHHHHHHHHHHHh
Q 019309 315 GWEPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 315 g~~p~~~~~e~l~~~~~~~~~~ 336 (343)
||+|+ +++|+|+++++||+++
T Consensus 305 g~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 305 GYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCCCc-CHHHHHHHHHHHHHHh
Confidence 99996 9999999999999775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=257.98 Aligned_cols=248 Identities=28% Similarity=0.345 Sum_probs=193.5
Q ss_pred EEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecCCCC
Q 019309 33 LVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPAS 106 (343)
Q Consensus 33 lItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~~~~ 106 (343)
|||||+||||++|+++|+++|. ++|+++++...... ..........+++.+|++|+ ++.++|+|||+|++..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 6999999999999999999994 68888887543222 12222223444999999986 5668999999998765
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCC---CCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQ---PETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~---~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
.. .......++++|+.++.+|+++|++.++ ||||+||.+++++. ...++ +|+.+ .+..+...|+.+|.++|
T Consensus 79 ~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~AE 154 (280)
T PF01073_consen 79 PW-GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALAE 154 (280)
T ss_pred cc-CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHHH
Confidence 32 2456677999999999999999999999 89999999998862 22232 34421 23336678999999999
Q ss_pred HHHHHHHH---Hh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 182 TLMFDYHR---QH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 182 ~~~~~~~~---~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
+++++... +. .+.+++|||+.||||+. ..+...+......+......+++....+++|++|+|.+++.+++
T Consensus 155 ~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d----~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~ 230 (280)
T PF01073_consen 155 KAVLEANGSELKNGGRLRTCALRPAGIYGPGD----QRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQ 230 (280)
T ss_pred HHHHhhcccccccccceeEEEEeccEEeCccc----ccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHH
Confidence 99998875 22 48999999999999983 34556666666667666667778889999999999999998765
Q ss_pred c---C------CCcceEecCCCccC-HHHHHHHHHHHhCCCcce
Q 019309 257 G---E------NTGPVNIGNPGEFT-MLELAETVKELINPGIEI 290 (343)
Q Consensus 257 ~---~------~~~~~~~~~~~~~s-~~e~~~~i~~~~g~~~~~ 290 (343)
. + .++.|++++++++. +.|+...+.+.+|.+.+.
T Consensus 231 ~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 231 ALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 2 2 15699999999999 999999999999987554
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=260.58 Aligned_cols=271 Identities=22% Similarity=0.286 Sum_probs=208.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
+++|+||||||+||||++|++.|+++| .++|++++|.... ...+.......+++++.+|+.|.. +.++|+|||
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih 80 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-QWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVH 80 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-HHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999986 3689988875322 111222222246889999999874 346999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
+||.........++...++.|+.++.+++++|.+.++ +||++||.. +..|.++|+.+|..
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~-------------------~~~p~~~Y~~sK~~ 141 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK-------------------AANPINLYGATKLA 141 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC-------------------CCCCCCHHHHHHHH
Confidence 9997654444566778999999999999999999998 899999963 22345679999999
Q ss_pred HHHHHHHHH---HHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 180 AETLMFDYH---RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 180 ~E~~~~~~~---~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+|.+++.+. ...|++++++||+++|||+ +.++..+...+..+. .+++. ++...++|+|++|++++++.++
T Consensus 142 ~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~-----~~~i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~al 215 (324)
T TIGR03589 142 SDKLFVAANNISGSKGTRFSVVRYGNVVGSR-----GSVVPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLKSL 215 (324)
T ss_pred HHHHHHHHHhhccccCcEEEEEeecceeCCC-----CCcHHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHHHH
Confidence 999987754 3568999999999999986 245666666666665 46664 6677899999999999999999
Q ss_pred hcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCC-CCccccChHHHHHhcCCcccccHHhHHH
Q 019309 256 EGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDD-PRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
++...+..+++++..+++.|+++.+.+.. .+...+..+.+ .....+|.++++++|||.|++++++++.
T Consensus 216 ~~~~~~~~~~~~~~~~sv~el~~~i~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 216 ERMLGGEIFVPKIPSMKITDLAEAMAPEC----PHKIVGIRPGEKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred hhCCCCCEEccCCCcEEHHHHHHHHHhhC----CeeEeCCCCCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 87543433356667899999999999864 23333333333 2335579999999999999999999885
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=269.14 Aligned_cols=289 Identities=17% Similarity=0.169 Sum_probs=212.6
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-------CCceEEEEcccCCcc-----c
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-------HPRFELIRHDVTEPL-----L 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~-----~ 92 (343)
..+++|+||||||+||||++|+++|+++| ++|+++.|.... ...+..+.. ..++.++.+|++|.. +
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~-~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQED-KEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 34578999999999999999999999999 999988774321 111111110 125788999999874 3
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCC--cccCCC--CC--CCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTS--EVYGDP--LI--HPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~--~v~~~~--~~--~~~~e~~~~~~ 164 (343)
.++|+|||+++...+...........+.|+.++.+++++|++. ++ ||||+||. .+|+.. .. ..++|+.+...
T Consensus 127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~ 206 (367)
T PLN02686 127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE 206 (367)
T ss_pred HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence 4799999999865432221222355678999999999999986 68 89999996 477642 22 23566644322
Q ss_pred -CCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 165 -NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 165 -~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
.+..|.++|+.+|..+|++++.++.+.|++++++||++||||+....... .++ ....+. +.+++++ .++++|
T Consensus 207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~---~~~-~~~~g~-~~~~g~g--~~~~v~ 279 (367)
T PLN02686 207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNST---ATI-AYLKGA-QEMLADG--LLATAD 279 (367)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCCh---hHH-HHhcCC-CccCCCC--CcCeEE
Confidence 24456678999999999999999888899999999999999975321111 122 344453 4455443 457999
Q ss_pred hHHHHHHHHHHHhcC---C-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC-CCCCCccccChHHHHHhcCCcc
Q 019309 244 VSDMVDGLIRLMEGE---N-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT-PDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 244 v~D~a~~i~~~~~~~---~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~p 318 (343)
|+|+|++++.+++.. . ++.| +++++.+++.|+++.+.+.+|.+......+.. ..+......|.+|++++|||.|
T Consensus 280 V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~ 358 (367)
T PLN02686 280 VERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRTR 358 (367)
T ss_pred HHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHhh
Confidence 999999999999852 2 4577 88889999999999999999977665544444 4566778889999999999998
Q ss_pred cccHH
Q 019309 319 KVKLR 323 (343)
Q Consensus 319 ~~~~~ 323 (343)
+-.++
T Consensus 359 ~~~~~ 363 (367)
T PLN02686 359 RCCYD 363 (367)
T ss_pred hcccc
Confidence 74444
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=249.81 Aligned_cols=225 Identities=36% Similarity=0.559 Sum_probs=193.2
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-------CCCEEEEecCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACP 104 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi~~a~~ 104 (343)
|||+|||||||++|+++|+++| +.|+.+.|........... .+++++.+|+.+.... ++|+|||+|+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeecc
Confidence 7999999999999999999999 9999888854322111111 2899999999977322 57999999987
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
........++...++.|+.++.+++++|++.++ |||++||..+|+.....+++|+ .+..|.++|+.+|...|++
T Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPYGASKRAAEEL 150 (236)
T ss_dssp SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccc
Confidence 543334467788899999999999999999999 9999999999999877788888 5668888899999999999
Q ss_pred HHHHHHHhCCceEEEEeccccCCC-CCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--C
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPR-MNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--T 260 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~ 260 (343)
++.+.++++++++++||+.+|||. .......++..++..+.+++++.+++++.+.++++|++|+|++++.+++++. +
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 230 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAG 230 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCC
Confidence 999999889999999999999998 2223467889999999999999999999999999999999999999999888 7
Q ss_pred cceEec
Q 019309 261 GPVNIG 266 (343)
Q Consensus 261 ~~~~~~ 266 (343)
++||++
T Consensus 231 ~~yNig 236 (236)
T PF01370_consen 231 GIYNIG 236 (236)
T ss_dssp EEEEES
T ss_pred CEEEeC
Confidence 899985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=250.69 Aligned_cols=304 Identities=24% Similarity=0.304 Sum_probs=238.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCc-----ccCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEP-----LLIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~-----~~~~~d~v 98 (343)
+.+.+++||||+||+|+||+++|++++ ..+|++++....... -..... ....+++..+|+.+. ++.++ .|
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~-~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~V 79 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN-LPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VV 79 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc-cchhhhcccCCceeEEecchhhhhhhhhhccCc-eE
Confidence 456789999999999999999999998 578998887543111 111111 257899999999876 45578 78
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC-CCCCCCCCCCCCCCCCCCchHHh
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI-HPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
+|||+...+.....+++...++|+.+|.+++++|.+.++ ++||+||..|...... ...+|+.. .|....++|+.+
T Consensus 80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y~~s 156 (361)
T KOG1430|consen 80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPYGES 156 (361)
T ss_pred EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---CccccccccchH
Confidence 888876655666667899999999999999999999999 9999999999876554 33444421 233344689999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
|..+|+++.+.+...++..+.+||+.||||+ +....+.+...+..|+.+...+++....+++++..++.+.+.+..
T Consensus 157 Ka~aE~~Vl~an~~~~l~T~aLR~~~IYGpg----d~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~ 232 (361)
T KOG1430|consen 157 KALAEKLVLEANGSDDLYTCALRPPGIYGPG----DKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAAR 232 (361)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEccccccCCC----CccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHH
Confidence 9999999999986667999999999999998 567888899999999988888888889999999999988886654
Q ss_pred c----C-C--CcceEecCCCccCHHHHHHHHHHHhCCCcce-EEccCC-----------------CCCC-----------
Q 019309 257 G----E-N--TGPVNIGNPGEFTMLELAETVKELINPGIEI-KMVENT-----------------PDDP----------- 300 (343)
Q Consensus 257 ~----~-~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~-----------------~~~~----------- 300 (343)
. . . ++.|++.++.++...++...+.+.+|...+. ...|.. +..+
T Consensus 233 aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~~~ 312 (361)
T KOG1430|consen 233 ALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVALLG 312 (361)
T ss_pred HHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheeeec
Confidence 2 1 1 5589999999998888888999999987662 111110 0011
Q ss_pred CccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhCC
Q 019309 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 301 ~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
....++.+|++++|||.|..+++|++.+++.|+......
T Consensus 313 ~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 313 VTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred cccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 123569999999999999999999999999988766543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=245.86 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=198.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
+.|+||||||+||||++|+++|+++| ++|+...+... +...+..|+.+ .++|+|||+||....
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~~~~~-------------~~~~v~~~l~~---~~~D~ViH~Aa~~~~ 70 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGSGRLE-------------NRASLEADIDA---VKPTHVFNAAGVTGR 70 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCC-CEEEEecCccC-------------CHHHHHHHHHh---cCCCEEEECCcccCC
Confidence 45899999999999999999999999 88875432110 00111222222 368999999997643
Q ss_pred c---ccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCC------CCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 108 I---FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL------IHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 108 ~---~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~------~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
. .+..++.+.++.|+.++.+++++|++.+++++++||.++|+... +.+++|++ .+..+.+.|+.+|.
T Consensus 71 ~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~ 146 (298)
T PLN02778 71 PNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKA 146 (298)
T ss_pred CCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHH
Confidence 2 24567889999999999999999999999888899999987533 22356653 23344578999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
++|.++..+. +..++|+..++|++.. ....++..+..+..+...+ .+++|++|++++++.++++.
T Consensus 147 ~~E~~~~~y~-----~~~~lr~~~~~~~~~~-----~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~ 211 (298)
T PLN02778 147 MVEELLKNYE-----NVCTLRVRMPISSDLS-----NPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRN 211 (298)
T ss_pred HHHHHHHHhh-----ccEEeeecccCCcccc-----cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCC
Confidence 9999998764 4568899888876421 2234677777777655432 26999999999999999876
Q ss_pred CCcceEecCCCccCHHHHHHHHHHHhCCCcc---eEEccCCC---CCCCccccChHHHHHhcCCcccccHHhHHHHHHHH
Q 019309 259 NTGPVNIGNPGEFTMLELAETVKELINPGIE---IKMVENTP---DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332 (343)
Q Consensus 259 ~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~ 332 (343)
..|.||+++++.+|+.|+++.+.+.++.+.. +...+... .+.....+|++|+++.++-.+. ..+++++..++.
T Consensus 212 ~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~ 290 (298)
T PLN02778 212 LTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEP 290 (298)
T ss_pred CCCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHH
Confidence 6789999999999999999999999986532 11111110 1111236899999998885455 678888888887
Q ss_pred HHHhh
Q 019309 333 FRSRL 337 (343)
Q Consensus 333 ~~~~~ 337 (343)
++..+
T Consensus 291 ~~~~~ 295 (298)
T PLN02778 291 NKKTK 295 (298)
T ss_pred HHhhh
Confidence 64443
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=225.52 Aligned_cols=305 Identities=25% Similarity=0.272 Sum_probs=247.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch-----hhhcCCCceEEEEcccCCcc-------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-----KKWIGHPRFELIRHDVTEPL-------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~-------~~~~ 95 (343)
++|+.||||-||+-|++|++.|++.| ++|+.+.|.....+... .......++.+..+|++|.. ..++
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P 79 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP 79 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence 46889999999999999999999999 99999998643333221 11123446889999999973 3479
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
|-|+|+|+...+..+...|....+.+..++.+|+++.+-.+ +||.+.||...||.....|..|+ +|..|.+|
T Consensus 80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSP 154 (345)
T COG1089 80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 154 (345)
T ss_pred hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCH
Confidence 99999999888888899999999999999999999999764 38999999999999999999999 89999999
Q ss_pred hHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeE-EecCCceeEeeeehHHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLT-VQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~D~a~~ 250 (343)
|+.+|..+--...+|...+|+-.+.=.+.+--+|..+.. .++-+..-+.++..|..-. ..|..+..+||-|+.|.+++
T Consensus 155 YAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~ 234 (345)
T COG1089 155 YAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEA 234 (345)
T ss_pred HHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHH
Confidence 999999999999999998888666656555555554322 2444555566666675533 35778899999999999999
Q ss_pred HHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceE------------------EccCCCCCC---CccccChHH
Q 019309 251 LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK------------------MVENTPDDP---RQRKPDISK 309 (343)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~------------------~~~~~~~~~---~~~~~~~~~ 309 (343)
+..+++++....|.++.++..|++|+++...+..|.+.... ..++.-..+ .....|.+|
T Consensus 235 mwlmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgdp~K 314 (345)
T COG1089 235 MWLMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTK 314 (345)
T ss_pred HHHHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcCCHHH
Confidence 99999999999999999999999999999999999765532 111111222 223459999
Q ss_pred HHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 310 AKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 310 ~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
+++.|||+|+++++|.++.|+++..+...
T Consensus 315 A~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 315 AKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred HHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998876643
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=218.25 Aligned_cols=292 Identities=24% Similarity=0.281 Sum_probs=242.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-------ccCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-------LLIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~vi~ 100 (343)
|+|||||++|.+|++|.+.+.+.+ . +-.++.- -.++|+++. +..++..|||
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~-~~~e~wvf~~-------------------skd~DLt~~a~t~~lF~~ekPthVIh 61 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQG-FDDENWVFIG-------------------SKDADLTNLADTRALFESEKPTHVIH 61 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcC-CCCcceEEec-------------------cccccccchHHHHHHHhccCCceeee
Confidence 799999999999999999999998 4 2222211 012444443 2247999999
Q ss_pred ecCCCCcccc-ccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 101 LACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 101 ~a~~~~~~~~-~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
+|+..+..+. ...+.+++..|++-..|++..|.++|+ +++++.|.++|.+-...|++|+......|....-.|..+|+
T Consensus 62 lAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr 141 (315)
T KOG1431|consen 62 LAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKR 141 (315)
T ss_pred hHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHH
Confidence 9987765443 345678889999999999999999999 89999999999999999999998776666666678999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHc----CC-CeEEecCCceeEeeeehHHHHHHH
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALR----GE-PLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
++.-.-+.|..++|..++.+-|.++|||..++. ++..++.+++++.. |. .+.++|.|...+.|+|++|+|+++
T Consensus 142 ~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~ 221 (315)
T KOG1431|consen 142 MIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLF 221 (315)
T ss_pred HHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHH
Confidence 998888999999999999999999999988654 35677777665542 33 688999999999999999999999
Q ss_pred HHHHhcCC-CcceEecCCC--ccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCccccc-HHhHHH
Q 019309 252 IRLMEGEN-TGPVNIGNPG--EFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVK-LRDGLP 327 (343)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~-~~e~l~ 327 (343)
+.++..-+ -+..+++.++ .+|.+|+++.+.++++...++.+-...+........|++|++. |+|.|+++ ++++|.
T Consensus 222 i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~s-l~pd~~ft~l~~ai~ 300 (315)
T KOG1431|consen 222 IWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRS-LLPDFKFTPLEQAIS 300 (315)
T ss_pred HHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHH-hCCCcccChHHHHHH
Confidence 99998655 6678888877 9999999999999999999998877666666667789999997 88899985 999999
Q ss_pred HHHHHHHHhhCCCCC
Q 019309 328 LMEEDFRSRLGVPKR 342 (343)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (343)
+.++||.++....|+
T Consensus 301 ~t~~Wy~~Ny~qark 315 (315)
T KOG1431|consen 301 ETVQWYLDNYEQARK 315 (315)
T ss_pred HHHHHHHHhHHhhcC
Confidence 999999998876653
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=245.31 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=200.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~~ 104 (343)
|+|||||||||||++|+++|+++| ++|++++|.... . ..+...+++++.+|+.|+ .+.++|+|||+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~----~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRK----A-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHH----h-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 689999999999999999999999 999999985321 1 111224789999999986 35689999999753
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
. ..++....+.|+.++.+++++|++.++ ||||+||..+.. .+.++|..+|..+|++
T Consensus 75 ~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~------------------~~~~~~~~~K~~~e~~ 131 (317)
T CHL00194 75 R-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ------------------YPYIPLMKLKSDIEQK 131 (317)
T ss_pred C-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc------------------cCCChHHHHHHHHHHH
Confidence 2 234455678899999999999999999 999999964321 1124589999999998
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
++ +.+++++++||+.+|+.. +..+......++++.+ ..+...+++||++|+|++++.+++.+. ++
T Consensus 132 l~----~~~l~~tilRp~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~ 198 (317)
T CHL00194 132 LK----KSGIPYTIFRLAGFFQGL--------ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLSLPETKNK 198 (317)
T ss_pred HH----HcCCCeEEEeecHHhhhh--------hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhcCccccCc
Confidence 74 458999999999888632 1112222333444444 345577899999999999999998654 67
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC---------------C-----------CC-ccccChHHHHHhc
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD---------------D-----------PR-QRKPDISKAKELL 314 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------~-----------~~-~~~~~~~~~~~~l 314 (343)
+||+++++.+|+.|+++.+.+.+|.+..+...|.... . .. ....+.+++.+.|
T Consensus 199 ~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 278 (317)
T CHL00194 199 TFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIF 278 (317)
T ss_pred EEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHh
Confidence 9999999999999999999999998766654332100 0 00 1123677888999
Q ss_pred CCccc--ccHHhHHHHHHHHHHHhhC
Q 019309 315 GWEPK--VKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 315 g~~p~--~~~~e~l~~~~~~~~~~~~ 338 (343)
|+.|. .++++++++++....++++
T Consensus 279 g~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (317)
T CHL00194 279 KIDPNELISLEDYFQEYFERILKRLK 304 (317)
T ss_pred CCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 99983 4899999998887766543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=241.32 Aligned_cols=275 Identities=18% Similarity=0.171 Sum_probs=193.8
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc--
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF-- 109 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~-- 109 (343)
||||||+||||+++++.|+++| ++|++++|.......... ..+.....+.....+.++|+|||+|+......
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~ 74 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRW 74 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccC
Confidence 6999999999999999999999 999999996543221110 11211112222335568999999998643211
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHH
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD 186 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~ 186 (343)
....+...++.|+.++.+++++|++.++ +||+.||.++||.....+++|+ .+..+.+.|+..+...|..+..
T Consensus 75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~-----~~~~~~~~~~~~~~~~e~~~~~ 149 (292)
T TIGR01777 75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEE-----DSPAGDDFLAELCRDWEEAAQA 149 (292)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcc-----cCCCCCChHHHHHHHHHHHhhh
Confidence 2234456778999999999999999986 4666777788987666677787 3344445567777777776654
Q ss_pred HHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-CcceEe
Q 019309 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPVNI 265 (343)
Q Consensus 187 ~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~ 265 (343)
. .+.+++++++||+.+|||.. .....++.......... .++++..+++||++|+|+++..+++.+. .+.||+
T Consensus 150 ~-~~~~~~~~ilR~~~v~G~~~-----~~~~~~~~~~~~~~~~~-~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~ 222 (292)
T TIGR01777 150 A-EDLGTRVVLLRTGIVLGPKG-----GALAKMLPPFRLGLGGP-LGSGRQWFSWIHIEDLVQLILFALENASISGPVNA 222 (292)
T ss_pred c-hhcCCceEEEeeeeEECCCc-----chhHHHHHHHhcCcccc-cCCCCcccccEeHHHHHHHHHHHhcCcccCCceEe
Confidence 4 34589999999999999963 22333332222221112 3567888999999999999999998755 789999
Q ss_pred cCCCccCHHHHHHHHHHHhCCCcceEEccCCC---------C-CCCccccChHHHHHhcCCcccc-cHHhHH
Q 019309 266 GNPGEFTMLELAETVKELINPGIEIKMVENTP---------D-DPRQRKPDISKAKELLGWEPKV-KLRDGL 326 (343)
Q Consensus 266 ~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~lg~~p~~-~~~e~l 326 (343)
++++.+|+.|+++.+.+.+|.+..+. .|... . .......+.+++++ +||+|.+ +++|++
T Consensus 223 ~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 223 TAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred cCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 99999999999999999998654332 22110 0 01233467888875 9999998 587753
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=257.19 Aligned_cols=252 Identities=21% Similarity=0.322 Sum_probs=190.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a~~ 104 (343)
|+|+||||+||||++++++|+++| ++|++++|.... . . ..+++++.+|+.|.. +.++|+|||||+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~---~----~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~ 71 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPD---S----W-PSSADFIAADIRDATAVESAMTGADVVAHCAWV 71 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchh---h----c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence 689999999999999999999999 999999985311 1 1 135788999998862 3579999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
... .++.|+.++.+++++|++.++ +|||+||.. |.++|++
T Consensus 72 ~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~l 112 (854)
T PRK05865 72 RGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQM 112 (854)
T ss_pred ccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHH
Confidence 321 458899999999999999998 899999852 7888887
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
+. +++++++++||+++|||+. ..++..+.. ..+...+.+...++|||++|+|+++..+++... ++
T Consensus 113 l~----~~gl~~vILRp~~VYGP~~--------~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~gg 179 (854)
T PRK05865 113 LA----DCGLEWVAVRCALIFGRNV--------DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSG 179 (854)
T ss_pred HH----HcCCCEEEEEeceEeCCCh--------HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCC
Confidence 74 3589999999999999862 123333222 222222344557799999999999999997543 67
Q ss_pred ceEecCCCccCHHHHHHHHHHHhC---CCcceEEccCC--CCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHh
Q 019309 262 PVNIGNPGEFTMLELAETVKELIN---PGIEIKMVENT--PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~ 336 (343)
+||+++++.+|+.|+++.+.+... .+......+.. ........+|.+|++++|||+|+++++++|+++++||+.+
T Consensus 180 vyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 180 PVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred eEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987542 11110000000 0111133579999999999999999999999999999987
Q ss_pred hCCCCC
Q 019309 337 LGVPKR 342 (343)
Q Consensus 337 ~~~~~~ 342 (343)
...++|
T Consensus 260 i~~~~~ 265 (854)
T PRK05865 260 IGLGKR 265 (854)
T ss_pred cccccc
Confidence 765544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=234.96 Aligned_cols=277 Identities=17% Similarity=0.136 Sum_probs=192.1
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc--cchhhhc-CCCceEEEEcccCCc-----ccCCCC
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK--DNLKKWI-GHPRFELIRHDVTEP-----LLIEVD 96 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~d~~~~-----~~~~~d 96 (343)
+...+++||||||+||||++++++|+++| ++|+++.|+..... ..+..+. ...+++++.+|++|. .+.++|
T Consensus 2 ~~~~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d 80 (297)
T PLN02583 2 FDESSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCS 80 (297)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCC
Confidence 34567899999999999999999999999 99999988421111 0111111 123688899999886 355899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccCCC-----CCCCCCCCCCCCCC-CCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP-----LIHPQPETYWGNVN-PIG 168 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~~~-----~~~~~~e~~~~~~~-~~~ 168 (343)
.|+|+++.... ...+....++.|+.++.+++++|.+. ++ |||++||..+++.. ...+++|+.|.... ...
T Consensus 81 ~v~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~ 158 (297)
T PLN02583 81 GLFCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRK 158 (297)
T ss_pred EEEEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhh
Confidence 99998764432 12245678999999999999999987 46 89999998775321 22356676442211 111
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
+...|+.+|..+|+.++.+.++.+++++++||++||||+..... . ...+. ..... ...+++||++|+|
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-----~----~~~~~-~~~~~--~~~~~~v~V~Dva 226 (297)
T PLN02583 159 FKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-----P----YLKGA-AQMYE--NGVLVTVDVNFLV 226 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-----h----hhcCC-cccCc--ccCcceEEHHHHH
Confidence 22369999999999999998878999999999999999743211 1 22222 12222 2356799999999
Q ss_pred HHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEc-cCCCCCCCccccChHHHHHhcCCcc
Q 019309 249 DGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMV-ENTPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 249 ~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
++++.+++.+. .+.|+++++....+.++++.+.+.+. +.++... +..........++++|+++ ||++.
T Consensus 227 ~a~~~al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~ 296 (297)
T PLN02583 227 DAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSP-LIPSPPPYEMQGSEVYQQRIRNKKLNK-LMEDF 296 (297)
T ss_pred HHHHHHhcCcccCCcEEEecCCCccHHHHHHHHHHhCC-CCCCCCcccccCCCccccccChHHHHH-hCccc
Confidence 99999999766 66777777666667889999999874 2222111 1111112335678999976 88864
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=246.89 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=190.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccc--hh-hhc-------------------CCCceEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDN--LK-KWI-------------------GHPRFEL 82 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~--~~-~~~-------------------~~~~~~~ 82 (343)
-.+|+|||||||||||++|++.|++.+. .+|+++.|........ +. ... ...++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 4689999999999999999999998652 4689999965432211 11 100 0157899
Q ss_pred EEcccCCcc------------cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCccc
Q 019309 83 IRHDVTEPL------------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY 148 (343)
Q Consensus 83 ~~~d~~~~~------------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~ 148 (343)
+.+|+.++. ..++|+|||+|+.... ..++...+..|+.++.+++++|++. ++ +|||+||.++|
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy 165 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC 165 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence 999998431 2369999999986642 3567888999999999999999986 56 89999999999
Q ss_pred CCCCCCCCCCCCCCCC--------------------------------------------C---CCCCCCchHHhHHHHH
Q 019309 149 GDPLIHPQPETYWGNV--------------------------------------------N---PIGVRSCYDEGKRVAE 181 (343)
Q Consensus 149 ~~~~~~~~~e~~~~~~--------------------------------------------~---~~~~~~~Y~~~K~~~E 181 (343)
|...+ .+.|...+.. . ...+.+.|+.+|..+|
T Consensus 166 G~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE 244 (491)
T PLN02996 166 GEKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGE 244 (491)
T ss_pred cCCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHH
Confidence 86432 1222111100 0 1123457999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHH------HHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVV------SNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+++..+. .+++++|+||++|||+.+.+.. .++ ..++..+.+|....+++++++.+|+|||+|++++++.++
T Consensus 245 ~lv~~~~--~~lpv~i~RP~~V~G~~~~p~~-gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~ 321 (491)
T PLN02996 245 MLLGNFK--ENLPLVIIRPTMITSTYKEPFP-GWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAM 321 (491)
T ss_pred HHHHHhc--CCCCEEEECCCEeccCCcCCCC-CcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHH
Confidence 9998774 3899999999999999876532 222 334555566666677889999999999999999999998
Q ss_pred hcC-----CCcceEecCC--CccCHHHHHHHHHHHhCC
Q 019309 256 EGE-----NTGPVNIGNP--GEFTMLELAETVKELINP 286 (343)
Q Consensus 256 ~~~-----~~~~~~~~~~--~~~s~~e~~~~i~~~~g~ 286 (343)
.+. ...+||++++ .++|+.|+++.+.+.++.
T Consensus 322 ~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~ 359 (491)
T PLN02996 322 AAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSK 359 (491)
T ss_pred HHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhh
Confidence 752 2458999998 899999999999998864
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=258.91 Aligned_cols=295 Identities=23% Similarity=0.242 Sum_probs=213.8
Q ss_pred CEEEEEcCchhHHHHHHHHHH--hcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc----------cCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLM--ENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL----------LIE 94 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~--~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~----------~~~ 94 (343)
|+|||||||||||++|+++|+ +.| ++|++++|... ....... ....+++++.+|+.++. +.+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~--~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQS--LSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcch--HHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence 689999999999999999999 477 99999998431 1222211 12247899999998852 257
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCch
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y 173 (343)
+|+|||||+.... ........+.|+.++.+++++|++.++ +|||+||..+||... .+.+|+.+. .+..+.++|
T Consensus 78 ~D~Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~-~~~~e~~~~--~~~~~~~~Y 151 (657)
T PRK07201 78 IDHVVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYE-GVFREDDFD--EGQGLPTPY 151 (657)
T ss_pred CCEEEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCcc-Cccccccch--hhcCCCCch
Confidence 9999999986532 234566789999999999999999988 899999999998643 234554321 122334679
Q ss_pred HHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-----ccHHHHHHHHHHcC-CCeEEecCCceeEeeeehHHH
Q 019309 174 DEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-----GRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~D~ 247 (343)
+.+|..+|+++.+ ..+++++|+||++|||+...... ..++..++...... ...++.+.+....+++|++|+
T Consensus 152 ~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddv 228 (657)
T PRK07201 152 HRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYV 228 (657)
T ss_pred HHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHH
Confidence 9999999999874 35899999999999998643211 11222333333221 123344455567899999999
Q ss_pred HHHHHHHHhcCC--CcceEecCCCccCHHHHHHHHHHHhCCCc---ceEEccCCC-----C-------------------
Q 019309 248 VDGLIRLMEGEN--TGPVNIGNPGEFTMLELAETVKELINPGI---EIKMVENTP-----D------------------- 298 (343)
Q Consensus 248 a~~i~~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~---~~~~~~~~~-----~------------------- 298 (343)
++++..+++.+. +++||+++++++++.|+++.+.+.+|.+. .....|... .
T Consensus 229 a~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (657)
T PRK07201 229 ADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQLGIP 308 (657)
T ss_pred HHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHhcCCC
Confidence 999999988644 56999999999999999999999998766 322222110 0
Q ss_pred ------CCCccccChHHHHHhc---CCcccccHHhHHHHHHHHHHHhh
Q 019309 299 ------DPRQRKPDISKAKELL---GWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 299 ------~~~~~~~~~~~~~~~l---g~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
......+|.+++++.| |+... .+.+.+..+++||.+++
T Consensus 309 ~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~ 355 (657)
T PRK07201 309 PEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHL 355 (657)
T ss_pred HHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcC
Confidence 0012356889998888 66555 78899999999997775
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=208.33 Aligned_cols=278 Identities=18% Similarity=0.220 Sum_probs=198.5
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-CCCCEEEEecCCCCccc-
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPASPIF- 109 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~vi~~a~~~~~~~- 109 (343)
|+|||||||||++|+..|.+.| |+|++++|+.......+. ..+. ..+..+... .++|+|||+||..-...
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR~~~~~~~~~~-----~~v~--~~~~~~~~~~~~~DavINLAG~~I~~rr 72 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTRRPPKASQNLH-----PNVT--LWEGLADALTLGIDAVINLAGEPIAERR 72 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEcCCcchhhhcC-----cccc--ccchhhhcccCCCCEEEECCCCcccccc
Confidence 6899999999999999999999 999999997654443322 1222 122222222 27999999999543333
Q ss_pred cc-cChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 110 YK-YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 110 ~~-~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
+. .......+..+..|..|+++..+... .+|--|.++.||+..+..++|+. +. ..+.-+.....-|+...
T Consensus 73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~-----~~-g~~Fla~lc~~WE~~a~ 146 (297)
T COG1090 73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES-----PP-GDDFLAQLCQDWEEEAL 146 (297)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC-----CC-CCChHHHHHHHHHHHHh
Confidence 32 23345778899999999999886554 46666677789999888999983 33 23445566666777666
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-CcceE
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPVN 264 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~ 264 (343)
... ..|.+++++|.|+|.++. +.++..++.....+---+ .|+|.++++|||++|++++|..++++.. .|.||
T Consensus 147 ~a~-~~gtRvvllRtGvVLs~~-----GGaL~~m~~~fk~glGG~-~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N 219 (297)
T COG1090 147 QAQ-QLGTRVVLLRTGVVLSPD-----GGALGKMLPLFKLGLGGK-LGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFN 219 (297)
T ss_pred hhh-hcCceEEEEEEEEEecCC-----CcchhhhcchhhhccCCc-cCCCCceeeeeeHHHHHHHHHHHHhCcCCCCccc
Confidence 553 448999999999999985 345555544433332122 3799999999999999999999999977 99999
Q ss_pred ecCCCccCHHHHHHHHHHHhCCCcceEEccCCC----CCCCccccCh-----HHHHHhcCCcccc-cHHhHHHHHHH
Q 019309 265 IGNPGEFTMLELAETVKELINPGIEIKMVENTP----DDPRQRKPDI-----SKAKELLGWEPKV-KLRDGLPLMEE 331 (343)
Q Consensus 265 ~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~lg~~p~~-~~~e~l~~~~~ 331 (343)
++++.+++..|+...+.+.++++..+...+... .......++. +|+.+ .||++++ ++++++.+.+.
T Consensus 220 ~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 220 LTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred ccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 999999999999999999998776654332210 0111123333 34443 7888887 78999988765
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=228.10 Aligned_cols=237 Identities=19% Similarity=0.197 Sum_probs=183.3
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc--hhhh-cCCCceEEEEcccCCcc-----cC-
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN--LKKW-IGHPRFELIRHDVTEPL-----LI- 93 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~d~~~~~-----~~- 93 (343)
++-...+|+|||||||||||++++++|+++| ++|++++|........ .... ....+++++.+|++|+. +.
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHH
Confidence 3345578899999999999999999999999 9999999864322110 0101 11247899999999873 22
Q ss_pred ---CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 94 ---EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 94 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
++|+||||++.... .....++.|+.++.+++++|++.++ |||++||.++++ |
T Consensus 133 ~~~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~-------------------p 188 (390)
T PLN02657 133 EGDPVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK-------------------P 188 (390)
T ss_pred hCCCCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC-------------------c
Confidence 59999999874321 1234467899999999999999998 899999998763 1
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE-eeeehHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR-SFCYVSDMV 248 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~D~a 248 (343)
...|..+|...|+.+.. .+.+++++|+||+.+||+. ..++..+..++++.+++++...+ ++||++|+|
T Consensus 189 ~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA 257 (390)
T PLN02657 189 LLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLA 257 (390)
T ss_pred chHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc---------HHHHHhhccCCceEEecCCcccccCceeHHHHH
Confidence 23588999999998865 3468999999999999753 22455666778777778776544 679999999
Q ss_pred HHHHHHHhcCC--CcceEecCC-CccCHHHHHHHHHHHhCCCcceEEccC
Q 019309 249 DGLIRLMEGEN--TGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVEN 295 (343)
Q Consensus 249 ~~i~~~~~~~~--~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~~ 295 (343)
++++.+++.+. +++||++++ +.+|+.|+++.+.+.+|.+.++...+.
T Consensus 258 ~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~ 307 (390)
T PLN02657 258 SFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPI 307 (390)
T ss_pred HHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCH
Confidence 99999997654 679999986 699999999999999998877766553
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=235.58 Aligned_cols=263 Identities=19% Similarity=0.240 Sum_probs=188.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEE-EEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
+.|+||||||+||||++|++.|.++| ++|. ...+- .....+... + ...++|+|||||+...
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l--~d~~~v~~~------------i---~~~~pd~Vih~Aa~~~ 440 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL--EDRSSLLAD------------I---RNVKPTHVFNAAGVTG 440 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc--ccHHHHHHH------------H---HhhCCCEEEECCcccC
Confidence 45899999999999999999999999 8874 22110 000011110 0 1136899999999763
Q ss_pred ---ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCC------CCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 107 ---PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP------LIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 107 ---~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~------~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
...++.++...++.|+.++.+++++|++.++++|++||.++|+.. ...++.|++ .+..+.+.|+.+|
T Consensus 441 ~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Yg~sK 516 (668)
T PLN02260 441 RPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFYSKTK 516 (668)
T ss_pred CCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChhhHHH
Confidence 224566888999999999999999999999998999999998742 134677763 2333457899999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
.++|+++..+. +..++|+.++||.... .. .+++..+++... +.+ ..+..+++|++.+++.+++
T Consensus 517 ~~~E~~~~~~~-----~~~~~r~~~~~~~~~~-~~----~nfv~~~~~~~~~~~v------p~~~~~~~~~~~~~~~l~~ 580 (668)
T PLN02260 517 AMVEELLREYD-----NVCTLRVRMPISSDLS-NP----RNFITKISRYNKVVNI------PNSMTVLDELLPISIEMAK 580 (668)
T ss_pred HHHHHHHHhhh-----hheEEEEEEecccCCC-Cc----cHHHHHHhccceeecc------CCCceehhhHHHHHHHHHH
Confidence 99999998763 4678899989975321 11 234444444443 222 1246778889999898888
Q ss_pred cCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEE-----cc--CCCCCCCccccChHHHHHhcCCcccccHHhHHHHH
Q 019309 257 GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM-----VE--NTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329 (343)
Q Consensus 257 ~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~ 329 (343)
...+|+||+++++.+|+.|+++.+.+.++....+.. .+ ....++.. .+|++|+++.+|+ +. +|+|++.++
T Consensus 581 ~~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~-~~~~~l~~~ 657 (668)
T PLN02260 581 RNLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LL-SIKESLIKY 657 (668)
T ss_pred hCCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-cc-chHHHHHHH
Confidence 655799999999999999999999998853321111 11 11223444 7999999998998 65 899999988
Q ss_pred HH
Q 019309 330 EE 331 (343)
Q Consensus 330 ~~ 331 (343)
+.
T Consensus 658 ~~ 659 (668)
T PLN02260 658 VF 659 (668)
T ss_pred Hh
Confidence 76
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=210.80 Aligned_cols=230 Identities=27% Similarity=0.352 Sum_probs=175.0
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEE----EEcccCCcc-----cC--CCCE
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFEL----IRHDVTEPL-----LI--EVDQ 97 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~----~~~d~~~~~-----~~--~~d~ 97 (343)
||||||+|.||+.|+++|++.++..+++++|+......-...+ ....++++ +-+|+.|.. +. ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 7999999999999999999999789999998543322222222 12334543 478998873 23 7999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHh
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
|||+|+.-.+...+.+|.+.+..|+.++.+++++|.++++ +||++||..+ ..|.+.||.+
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKA-------------------v~PtnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKA-------------------VNPTNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGC-------------------SS--SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccc-------------------CCCCcHHHHH
Confidence 9999998888889999999999999999999999999999 9999999854 4566889999
Q ss_pred HHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHH
Q 019309 177 KRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR 253 (343)
Q Consensus 177 K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~ 253 (343)
|+.+|+++..+.... +..++++|+|+|.|.. ++.++.|.+++.+|+++.+. +++-.+-|..+++.++.++.
T Consensus 142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-----GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~ 215 (293)
T PF02719_consen 142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-----GSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQ 215 (293)
T ss_dssp HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-----TSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-----CcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHH
Confidence 999999999988765 5799999999999964 78999999999999999984 55677889999999999999
Q ss_pred HHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC
Q 019309 254 LMEGEN-TGPVNIGNPGEFTMLELAETVKELINP 286 (343)
Q Consensus 254 ~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~ 286 (343)
++.... +++|.+--+++++..|+++.+.+..|.
T Consensus 216 a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~ 249 (293)
T PF02719_consen 216 AAALAKGGEIFVLDMGEPVKILDLAEAMIELSGL 249 (293)
T ss_dssp HHHH--TTEEEEE---TCEECCCHHHHHHHHTT-
T ss_pred HHhhCCCCcEEEecCCCCcCHHHHHHHHHhhccc
Confidence 998766 557777778999999999999999974
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=218.84 Aligned_cols=251 Identities=22% Similarity=0.286 Sum_probs=182.7
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCc--cchhhhc----------CCCceEEEEcccCCccc-----
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSK--DNLKKWI----------GHPRFELIRHDVTEPLL----- 92 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~--~~~~~~~----------~~~~~~~~~~d~~~~~~----- 92 (343)
+|||||||||||++|++.|+++|+ ++|+++.|...... +.+...+ ...+++++.+|+.++.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 589999999999999999999983 46999998643210 0111100 01478999999876532
Q ss_pred ------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|+|||+|+... .........+.|+.++.+++++|.+.++ +|+|+||.++|+.....+..|+......
T Consensus 81 ~~~~~~~~~d~vih~a~~~~---~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN---WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec---cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 36999999998653 2234556778999999999999999988 6999999999986543333444221112
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCc-eeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGT-QTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 242 (343)
...+.+.|+.+|+.+|.+++.+... |++++++||+.+||+..... ...++..++......+..+ ... ...+++
T Consensus 158 ~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~ 233 (367)
T TIGR01746 158 PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYP---DSPELTEDLT 233 (367)
T ss_pred ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCC---CCCccccCcc
Confidence 2233467999999999999887655 99999999999999743211 1234445555444433322 222 357899
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCCcc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPGIE 289 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~ 289 (343)
|++|++++++.++.... +++||+++++++++.|+++.+.+ .|.+.+
T Consensus 234 ~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 234 PVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 99999999999997655 56899999999999999999998 776644
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=212.64 Aligned_cols=235 Identities=27% Similarity=0.357 Sum_probs=203.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chhhhcCCCceEEEEcccCCccc-----C--CC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKKWIGHPRFELIRHDVTEPLL-----I--EV 95 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~-----~--~~ 95 (343)
+-.+|+||||||+|-||+.+++++++.++.++++++|+...... .+....+..++.++-+|+.|.+. . ++
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 35789999999999999999999999998899999986544332 22232334678899999999742 2 49
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchH
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
|+|||+|+.-.+...+.+|.+.+..|+.|+.|++++|.++++ +||.+||. ....|.+.||
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD-------------------KAV~PtNvmG 387 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD-------------------KAVNPTNVMG 387 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC-------------------cccCCchHhh
Confidence 999999999888899999999999999999999999999999 99999997 4566778899
Q ss_pred HhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
.+|+.+|..+..+.... +..++.+|.|+|.|.. ++.++-|.+++.+|+++++. +++-.+-|..+.|.++.+
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~GgplTvT-dp~mtRyfMTI~EAv~LV 461 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTVT-DPDMTRFFMTIPEAVQLV 461 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHcCCCcccc-CCCceeEEEEHHHHHHHH
Confidence 99999999999987743 3799999999999974 78999999999999999984 667778899999999999
Q ss_pred HHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhC
Q 019309 252 IRLMEGEN-TGPVNIGNPGEFTMLELAETVKELIN 285 (343)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g 285 (343)
+.+..-.. +++|.+--|++++..|+++.+.+..|
T Consensus 462 lqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 462 LQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 99998777 45777888899999999999999997
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=220.18 Aligned_cols=233 Identities=21% Similarity=0.318 Sum_probs=172.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----cCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~d~vi~~a~~~ 105 (343)
|+||||||+||||++|+++|+++| ++|++++|.... ....+++++.+|+.++. +.++|+|||+|+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 689999999999999999999999 999999974321 11246889999998874 34799999999753
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
.. . ....|+.++.+++++|++.++|+||+||. +|.. + .|. .+|.++.
T Consensus 72 ~~-----~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~------~-------------~~~----~aE~ll~ 118 (699)
T PRK12320 72 TS-----A---PGGVGITGLAHVANAAARAGARLLFVSQA--AGRP------E-------------LYR----QAETLVS 118 (699)
T ss_pred cc-----c---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCC------c-------------ccc----HHHHHHH
Confidence 21 1 12579999999999999999999999986 3311 0 122 3666653
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEe
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNI 265 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~ 265 (343)
.++++++|+|++++|||.......+++..++.....++++ .+||++|++++++.+++....|+||+
T Consensus 119 ----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI----------~vIyVdDvv~alv~al~~~~~GiyNI 184 (699)
T PRK12320 119 ----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI----------RVLHLDDLVRFLVLALNTDRNGVVDL 184 (699)
T ss_pred ----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce----------EEEEHHHHHHHHHHHHhCCCCCEEEE
Confidence 3468999999999999975443345666666655444433 35999999999999998766789999
Q ss_pred cCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHH
Q 019309 266 GNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLR 323 (343)
Q Consensus 266 ~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~ 323 (343)
++++.+|+.|+++.+.... +...+. ...+......|.+.....++|.|+..++
T Consensus 185 G~~~~~Si~el~~~i~~~~-p~~~~~----~~~~~~~~~pdi~~a~~~~~w~~~~~~~ 237 (699)
T PRK12320 185 ATPDTTNVVTAWRLLRSVD-PHLRTR----RVRSWEQLIPEVDIAAVQEDWNFEFGWQ 237 (699)
T ss_pred eCCCeeEHHHHHHHHHHhC-CCcccc----ccccHHHhCCCCchhhhhcCCCCcchHH
Confidence 9999999999998887662 222221 1122233455777777789999997664
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=203.03 Aligned_cols=214 Identities=23% Similarity=0.262 Sum_probs=128.6
Q ss_pred EEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCC--ccchhhhc------------CCCceEEEEcccCCcccC-----
Q 019309 34 VTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGS--KDNLKKWI------------GHPRFELIRHDVTEPLLI----- 93 (343)
Q Consensus 34 ItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~--~~~~~~~~------------~~~~~~~~~~d~~~~~~~----- 93 (343)
|||||||||++|+++|++.+. .+|+++.|..... .+.+.+.+ ...+++++.||+.++.+.
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999993 2899999964321 11111111 146899999999987542
Q ss_pred ------CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCC-----CCC
Q 019309 94 ------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPE-----TYW 161 (343)
Q Consensus 94 ------~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e-----~~~ 161 (343)
++|+|||||+..+. ..+.....+.|+.++.++++.|.+.+. +|+|+||..+.+...+. ..| +..
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~---~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~-~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNF---NAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGT-IEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-SB---S-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT---SSS-HHH--
T ss_pred hhccccccceeeecchhhhh---cccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCc-ccccccccccc
Confidence 59999999987653 335556789999999999999997666 99999996565543322 211 111
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCC-CC-CccHHHHHHHHHHcCCCe-EEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN-ID-DGRVVSNFIAQALRGEPL-TVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (343)
.........+.|..||+.+|++++.+.++.|++++|+||+.|+|...+ .. ...++..++......+.. ...+..+..
T Consensus 157 ~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (249)
T PF07993_consen 157 DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDAR 236 (249)
T ss_dssp EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT
T ss_pred cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCce
Confidence 111233445689999999999999999888999999999999994332 21 233344444444444433 344445566
Q ss_pred EeeeehHHHHHHH
Q 019309 239 RSFCYVSDMVDGL 251 (343)
Q Consensus 239 ~~~v~v~D~a~~i 251 (343)
+++++||.+|++|
T Consensus 237 ~d~vPVD~va~aI 249 (249)
T PF07993_consen 237 LDLVPVDYVARAI 249 (249)
T ss_dssp --EEEHHHHHHHH
T ss_pred EeEECHHHHHhhC
Confidence 9999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=209.45 Aligned_cols=252 Identities=18% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCc--cchh-hhc-------------------CCCceEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSK--DNLK-KWI-------------------GHPRFELI 83 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~--~~~~-~~~-------------------~~~~~~~~ 83 (343)
.+|+|||||||||||.+|++.|++.++ .+|+++.|...... +.+. .+. ...++.++
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 589999999999999999999998762 36899999643321 1111 110 12468899
Q ss_pred EcccCCccc-----------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCC
Q 019309 84 RHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGD 150 (343)
Q Consensus 84 ~~d~~~~~~-----------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~ 150 (343)
.+|+.++.+ .++|+|||+|+... ...++...++.|+.++.+++++|++.+ . +|||+||++|||.
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~---f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~ 274 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT---FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQ 274 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc---cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecC
Confidence 999998732 36999999998664 345678889999999999999999875 4 7999999999987
Q ss_pred CCCCCCCCCCCCCC--------------------C----------------------------------CCCCCCchHHh
Q 019309 151 PLIHPQPETYWGNV--------------------N----------------------------------PIGVRSCYDEG 176 (343)
Q Consensus 151 ~~~~~~~e~~~~~~--------------------~----------------------------------~~~~~~~Y~~~ 176 (343)
..+ .+.|...+.. + .....+.|..+
T Consensus 275 ~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~T 353 (605)
T PLN02503 275 RQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFT 353 (605)
T ss_pred CCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHH
Confidence 532 3333322100 0 01123679999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC----c-cHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD----G-RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
|..+|.++++.. .+++++|+||+.|.+....|.. + ......+....+|.--.++++++...|+|+||.++.++
T Consensus 354 K~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~ 431 (605)
T PLN02503 354 KAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNAT 431 (605)
T ss_pred HHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHH
Confidence 999999998664 3799999999999554332221 1 11112222223443333667888999999999999999
Q ss_pred HHHHhc----C--CCcceEecCC--CccCHHHHHHHHHHHhC
Q 019309 252 IRLMEG----E--NTGPVNIGNP--GEFTMLELAETVKELIN 285 (343)
Q Consensus 252 ~~~~~~----~--~~~~~~~~~~--~~~s~~e~~~~i~~~~g 285 (343)
+.++.. . ...+||++++ +++++.|+++.+.+.+.
T Consensus 432 i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~ 473 (605)
T PLN02503 432 LAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYK 473 (605)
T ss_pred HHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHh
Confidence 998432 1 2469999988 89999999999998774
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=193.91 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=169.8
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----c------CC-CCEE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----L------IE-VDQI 98 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~------~~-~d~v 98 (343)
+||||||||++|++++++|+++| ++|++++|+..... ..+++.+.+|+.|+. + .+ +|.|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v 71 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV 71 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence 48999999999999999999999 99999999643211 236677788998763 2 45 9999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
+|+++... + ......+++++|++.|+ |||++||..++.. . ..+
T Consensus 72 ~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~-----------------~------~~~ 115 (285)
T TIGR03649 72 YLVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG-----------------G------PAM 115 (285)
T ss_pred EEeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC-----------------C------chH
Confidence 99985321 0 12345689999999999 8999998755311 0 012
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
...|++++. ..|++++++||+++|++.... .....+...+.+. .+.++..+++|+++|+|++++.++..
T Consensus 116 ~~~~~~l~~---~~gi~~tilRp~~f~~~~~~~-------~~~~~~~~~~~~~-~~~g~~~~~~v~~~Dva~~~~~~l~~ 184 (285)
T TIGR03649 116 GQVHAHLDS---LGGVEYTVLRPTWFMENFSEE-------FHVEAIRKENKIY-SATGDGKIPFVSADDIARVAYRALTD 184 (285)
T ss_pred HHHHHHHHh---ccCCCEEEEeccHHhhhhccc-------ccccccccCCeEE-ecCCCCccCcccHHHHHHHHHHHhcC
Confidence 234544432 148999999999888653110 0112222333333 34567889999999999999999987
Q ss_pred CC--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC--------CCC----------------ccccChHHHH
Q 019309 258 EN--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD--------DPR----------------QRKPDISKAK 311 (343)
Q Consensus 258 ~~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------~~~----------------~~~~~~~~~~ 311 (343)
+. ++.|++++++.+|+.|+++.+.+.+|++......+.... .+. .....+...+
T Consensus 185 ~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 264 (285)
T TIGR03649 185 KVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLNDVVK 264 (285)
T ss_pred CCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccchHH
Confidence 64 568999999999999999999999998876654432110 000 0001245556
Q ss_pred HhcCCcccccHHhHHHHHHH
Q 019309 312 ELLGWEPKVKLRDGLPLMEE 331 (343)
Q Consensus 312 ~~lg~~p~~~~~e~l~~~~~ 331 (343)
+.+|.+|+ +++|.+++...
T Consensus 265 ~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 265 AVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HHhCcCCc-cHHHHHHHhhh
Confidence 77898887 88887776643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=176.00 Aligned_cols=297 Identities=22% Similarity=0.243 Sum_probs=223.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhcC------CCceEEEEcccCCccc-------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWIG------HPRFELIRHDVTEPLL-------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~------~~~~~~~~~d~~~~~~-------~ 93 (343)
..|..||||-||.=|++|++.|+..| |+|+.+.|....-+. ....+.. ...++...+|++|..+ .
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 45789999999999999999999999 999999985433221 1222211 2467888999999743 4
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC----CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~----~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
+++-|+|+|+...+..+.+-++..-++...++..|+++.+.++ +||...||...||...+.|..|. .|..|
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyP 180 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYP 180 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCC
Confidence 7999999998776655666666666788889999999998876 38999999999999999999999 89999
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCC---CCCCC-CccHHHHHHHHHHcCCC-eEEecCCceeEeeeeh
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP---RMNID-DGRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYV 244 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v 244 (343)
.+||+.+|..+--++.++...+++ ..+-|.+|.. ..+.. ..+-+...+.++.-|+. -...+..+..+||-|+
T Consensus 181 RSPYa~aKmy~~WivvNyREAYnm---fAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA 257 (376)
T KOG1372|consen 181 RSPYAAAKMYGYWIVVNYREAYNM---FACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHA 257 (376)
T ss_pred CChhHHhhhhheEEEEEhHHhhcc---eeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchh
Confidence 999999999988877777766655 3344555543 22111 12233334444444543 2334677889999999
Q ss_pred HHHHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEE-----------------ccCCCCCC---Cccc
Q 019309 245 SDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM-----------------VENTPDDP---RQRK 304 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~-----------------~~~~~~~~---~~~~ 304 (343)
.|.++++..++++.....|.++.++..|++|+++.-...+|.....+- ....-..+ ....
T Consensus 258 ~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~Lq 337 (376)
T KOG1372|consen 258 GDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQ 337 (376)
T ss_pred HHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhhc
Confidence 999999999999999999999999999999999999888875433320 01111111 1223
Q ss_pred cChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 305 PDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 305 ~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
.|.+|+++.|||+|+.++++-+++|+..-
T Consensus 338 GdasKAk~~LgW~pkv~f~eLVkeMv~~D 366 (376)
T KOG1372|consen 338 GDASKAKKTLGWKPKVTFPELVKEMVASD 366 (376)
T ss_pred CChHHHHHhhCCCCccCHHHHHHHHHHhH
Confidence 48999999999999999999999998853
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=192.18 Aligned_cols=253 Identities=19% Similarity=0.201 Sum_probs=174.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc--cchhhh---------cCCCceEEEEcccCCcccC-----
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK--DNLKKW---------IGHPRFELIRHDVTEPLLI----- 93 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~---------~~~~~~~~~~~d~~~~~~~----- 93 (343)
++||+||||||+|.+|+.+|+.+-..+|++++|...... ..+.+. ....+++++.+|+..+.+.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 579999999999999999999998569999999543111 111111 1246899999999987543
Q ss_pred ------CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCe-EEEEeCCcccCCCCCCCCCC----CCCC
Q 019309 94 ------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPE----TYWG 162 (343)
Q Consensus 94 ------~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r-~i~~SS~~v~~~~~~~~~~e----~~~~ 162 (343)
.+|.|||+++.++ +-....+....||.++..+++.|...+.| ++|+||++|+........++ +...
T Consensus 81 ~~~La~~vD~I~H~gA~Vn---~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAALVN---HVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecchhhc---ccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 4999999998654 44566778899999999999999998884 99999999986543222222 2222
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCC--CCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI--DDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
...-..+.++|++||+.+|..+++.... |++++|+|||+|.|...+. ....++..++..+..-+.++- .....+
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~---~~~~~~ 233 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPD---SEYSLD 233 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCC---cccchh
Confidence 2233344578999999999999999877 9999999999999987622 123466666666666554432 112233
Q ss_pred eeehHH-----------HHHHHHHHHhcCC--CcceE-ecCCCccCHHHHHHHHHH--HhCCCcc
Q 019309 241 FCYVSD-----------MVDGLIRLMEGEN--TGPVN-IGNPGEFTMLELAETVKE--LINPGIE 289 (343)
Q Consensus 241 ~v~v~D-----------~a~~i~~~~~~~~--~~~~~-~~~~~~~s~~e~~~~i~~--~~g~~~~ 289 (343)
.+.++. +++++..+...+. -..|+ ..-+..+...++.+.+.+ ..+.+..
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~~~ 298 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYPEW 298 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhhhhccCCchh
Confidence 333333 3334444432222 23444 344788999999999988 4444433
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=178.82 Aligned_cols=227 Identities=18% Similarity=0.215 Sum_probs=187.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-----CCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~d~vi~~a 102 (343)
.|-.+-|+|||||+|++++++|.+.| -.|++-.|.++.....++-..+...+-++..|+.|++.. ...+|||+.
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLI 138 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLI 138 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEee
Confidence 34578899999999999999999999 999999997766555555555567899999999998543 589999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|. .++...-.+.++|+.+.+.|+..|++.|+ |||++|+..+ .....+.|-++|..+|
T Consensus 139 Gr----d~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga------------------nv~s~Sr~LrsK~~gE 196 (391)
T KOG2865|consen 139 GR----DYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA------------------NVKSPSRMLRSKAAGE 196 (391)
T ss_pred cc----ccccCCcccccccchHHHHHHHHHHhhChhheeehhhccc------------------cccChHHHHHhhhhhH
Confidence 84 33444445668999999999999999999 9999999763 1223366999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc-eeEeeeehHHHHHHHHHHHhcCC-
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT-QTRSFCYVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~D~a~~i~~~~~~~~- 259 (343)
..+++.. .+.+|+||+.+||.. .+++..+.....+-+.+++++.+. ..-.+|+|-|+|.+|..+++.+.
T Consensus 197 ~aVrdaf----PeAtIirPa~iyG~e-----Drfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s 267 (391)
T KOG2865|consen 197 EAVRDAF----PEATIIRPADIYGTE-----DRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS 267 (391)
T ss_pred HHHHhhC----Ccceeechhhhcccc-----hhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccc
Confidence 9998653 478999999999975 466666666666678889888775 45689999999999999999887
Q ss_pred -CcceEecCCCccCHHHHHHHHHHHhCC
Q 019309 260 -TGPVNIGNPGEFTMLELAETVKELINP 286 (343)
Q Consensus 260 -~~~~~~~~~~~~s~~e~~~~i~~~~g~ 286 (343)
+.+|.+++++.+.+.|+++.|-+....
T Consensus 268 ~Gktye~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 268 MGKTYEFVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred cCceeeecCCchhhHHHHHHHHHHHHhh
Confidence 569999999999999999999887754
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=216.15 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=180.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcC---CCeEEEEecCCCCCccchhhh---c---------CCCceEEEEcccCCccc-
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVADNYFTGSKDNLKKW---I---------GHPRFELIRHDVTEPLL- 92 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~~~~~~~~---~---------~~~~~~~~~~d~~~~~~- 92 (343)
.++|||||||||||+++++.|++++ .++|+++.|...... ..... . ...+++++.+|+.++.+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEA-GLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHH-HHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 5899999999999999999999876 378999988542211 11111 0 01368899999986632
Q ss_pred ----------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCC---------
Q 019309 93 ----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL--------- 152 (343)
Q Consensus 93 ----------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~--------- 152 (343)
.++|+|||+|+..+ ...........|+.++.+++++|.+.++ +|+|+||.++|+...
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 36999999998654 2233445556899999999999999888 899999999996421
Q ss_pred ---CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCC
Q 019309 153 ---IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGE 227 (343)
Q Consensus 153 ---~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~ 227 (343)
...+.|+.+....+..+.+.|+.+|+.+|.++..+... |++++++||+.|||+..... ...++..++.....-+
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~ 1205 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLG 1205 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhC
Confidence 11234443222223334567999999999999887664 99999999999999865422 1234455554443322
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCC
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPG 287 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~ 287 (343)
.. .+....+++++++|++++++.++..+. ..+||++++..+++.++++.+.+. |.+
T Consensus 1206 ~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1206 LI---PNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred Cc---CCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 22 244467899999999999999987653 237999998899999999999764 544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=175.83 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=163.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEVD 96 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~d 96 (343)
.|++|||||+|+||++++++|+++| +.|+++.|+.... ..+.... ..++.++.+|++|.. ..++|
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAATVRRPDAL-DDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999999999 9999998853211 1111111 246889999999863 23589
Q ss_pred EEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+|||+||....... ..+....++.|+.++.++++++ ++.+. +||++||..... +.
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 142 (276)
T PRK06482 79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------------AY 142 (276)
T ss_pred EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------CC
Confidence 99999986543221 2334567889999999999997 55555 899999975431 22
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccc---cCCCCCCCC-----ccHHHHHHHHHHcCCCeEEecCCc
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNT---YGPRMNIDD-----GRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v---~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+.+.|+.+|...|.+++.+..+ +|++++++||+.+ ||++..... .......+......+.+.+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAI----- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCC-----
Confidence 23467999999999999888765 5899999999987 555432110 0111112222333222221
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP 286 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~ 286 (343)
+.+++|++++++.+++.+. ...|+++++...+..|+++.+.+.++.
T Consensus 218 ----~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 ----PGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred ----CCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998665 567999999899999998888887754
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=174.00 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=150.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------cc-CCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LL-IEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~d~vi~~ 101 (343)
+|+||||||||+||++++++|+++| ++|+++.|......... ....+++++.+|+.+. .+ .++|+||++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---PQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---ccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 4899999999999999999999999 99999988542211111 1124688999999873 23 479999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
+|.... .++...++.|..++.++++++++.++ |||++||.++|+...+.+..+.+ ....+...|...|..+
T Consensus 93 ~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k~~~ 164 (251)
T PLN00141 93 TGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAKLQA 164 (251)
T ss_pred CCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHHHHH
Confidence 875321 11222346788889999999999988 99999999999754332222211 0111112344567777
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~- 259 (343)
|++++ +.+++++++||+++++.... + ...+.........+|+.+|+|+++..+++.+.
T Consensus 165 e~~l~----~~gi~~~iirpg~~~~~~~~----------------~-~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~ 223 (251)
T PLN00141 165 EKYIR----KSGINYTIVRPGGLTNDPPT----------------G-NIVMEPEDTLYEGSISRDQVAEVAVEALLCPES 223 (251)
T ss_pred HHHHH----hcCCcEEEEECCCccCCCCC----------------c-eEEECCCCccccCcccHHHHHHHHHHHhcChhh
Confidence 77664 45899999999999986411 1 11111111122357999999999999998766
Q ss_pred -CcceEecCC---CccCHHHHHHHHHH
Q 019309 260 -TGPVNIGNP---GEFTMLELAETVKE 282 (343)
Q Consensus 260 -~~~~~~~~~---~~~s~~e~~~~i~~ 282 (343)
..++.+.+. ...++.++...+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 224 SYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 456777652 24788888887764
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=158.14 Aligned_cols=297 Identities=20% Similarity=0.203 Sum_probs=220.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi 99 (343)
.--+|||||+-|.+|..++..|...-.. .|+.-+..++.. ... ..-.++..|+.|... ..+|.+|
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~--~V~-----~~GPyIy~DILD~K~L~eIVVn~RIdWL~ 115 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPA--NVT-----DVGPYIYLDILDQKSLEEIVVNKRIDWLV 115 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCch--hhc-----ccCCchhhhhhccccHHHhhcccccceee
Confidence 3469999999999999999999887423 344433322111 111 123456667766532 2599999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
|..+..+ ...+.+......+|+++..|+++.|++++.+++.-|++++||..+...-+.+ .....|.+.||.+|..
T Consensus 116 HfSALLS-AvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPd----ltIQRPRTIYGVSKVH 190 (366)
T KOG2774|consen 116 HFSALLS-AVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPD----LTIQRPRTIYGVSKVH 190 (366)
T ss_pred eHHHHHH-HhcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCCC----eeeecCceeechhHHH
Confidence 9987665 3455666677899999999999999999999999999999997544332222 2577888999999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
+|.+-+.+..++|+++..+|.+.++........ ...-...+..++++++-..+-.++.+..+.+..|+-++++.++..+
T Consensus 191 AEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~ 270 (366)
T KOG2774|consen 191 AELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAAD 270 (366)
T ss_pred HHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCC
Confidence 999999999999999999999888865322221 2233344555565555666667888999999999999999999876
Q ss_pred C----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC---CCCCCccccChHHHHHhcCCcccccHHhHHHHHHH
Q 019309 259 N----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT---PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEE 331 (343)
Q Consensus 259 ~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~ 331 (343)
. ..+||+.+ ..+|-.|+++.+.+.+ +..++.+.+.. ..+.....+|.+.++++..|+.++.+-..+.-+++
T Consensus 271 ~~~lkrr~ynvt~-~sftpee~~~~~~~~~-p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~ 348 (366)
T KOG2774|consen 271 SQSLKRRTYNVTG-FSFTPEEIADAIRRVM-PGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVA 348 (366)
T ss_pred HHHhhhheeeece-eccCHHHHHHHHHhhC-CCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHH
Confidence 5 56899986 8999999999999988 44555544322 23445567899999999999998888888888888
Q ss_pred HHHHhhC
Q 019309 332 DFRSRLG 338 (343)
Q Consensus 332 ~~~~~~~ 338 (343)
..+.+.+
T Consensus 349 ~~~~n~~ 355 (366)
T KOG2774|consen 349 VHKSNLK 355 (366)
T ss_pred HHHhhhh
Confidence 7666543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=162.29 Aligned_cols=177 Identities=28% Similarity=0.406 Sum_probs=133.6
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecCCCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPAS 106 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~~~~ 106 (343)
|+|+||||++|+.++++|+++| ++|+++.|+..+ ... ..+++++.+|+.|+ .+.++|+||++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~----~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSK----AED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGG----HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchh----ccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 7999999999999999999999 999999995432 222 47999999999987 3558999999996433
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
. ....+.++++++++.++ |+|++||.++|+........+. .. ....|...|..+|+.++
T Consensus 73 ~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~e~~~~ 132 (183)
T PF13460_consen 73 K-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED------KP-IFPEYARDKREAEEALR 132 (183)
T ss_dssp T-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT------CG-GGHHHHHHHHHHHHHHH
T ss_pred c-------------cccccccccccccccccccceeeeccccCCCCCccccccc------cc-chhhhHHHHHHHHHHHH
Confidence 1 17778899999999999 9999999999874333211111 11 11468888888888774
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
+.+++++++||+.+||+.... ..+ ....+....++|+.+|+|++++.++++
T Consensus 133 ----~~~~~~~ivrp~~~~~~~~~~--~~~---------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 133 ----ESGLNWTIVRPGWIYGNPSRS--YRL---------------IKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp ----HSTSEEEEEEESEEEBTTSSS--EEE---------------ESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred ----hcCCCEEEEECcEeEeCCCcc--eeE---------------EeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 458999999999999986321 000 101333456899999999999999874
|
... |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=166.39 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=149.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------ 91 (343)
+++++||||||+|+||++++++|+++| ++|++++|......+.....+ ....+.++.+|+++..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 999999885432222222111 1235788999998863
Q ss_pred cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+.++|+|||++|...... ...++...++.|+.++.++++++.+. +..++.+++....
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------- 147 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE--------------- 147 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc---------------
Confidence 125899999998643221 12345668889999999999998642 2256666653221
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..+...|+.+|..+|.+++.+..+. +++++++||+.++||.... .+...+......+..+. .+
T Consensus 148 -~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~ 214 (249)
T PRK09135 148 -RPLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGN---SFDEEARQAILARTPLK---------RI 214 (249)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccc---cCCHHHHHHHHhcCCcC---------CC
Confidence 355566789999999999999998775 5899999999999997422 11122222222222211 12
Q ss_pred eehHHHHHHHHHHHhcCC---CcceEecCCCccC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TGPVNIGNPGEFT 272 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~s 272 (343)
.+++|+|+++..++.... +..|++.++..++
T Consensus 215 ~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 215 GTPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred cCHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 357999999976665322 5589999887654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=163.96 Aligned_cols=214 Identities=16% Similarity=0.087 Sum_probs=150.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 93 (343)
++|+||||||+|+||++|+++|+++| ++|+++.|......+...... ...++.++.+|+.++.. .
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999 898887775332222222211 12468899999987642 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||++|...... ...+....+..|+.++.++++.+ ++.+. +||++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~-------------- 149 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG-------------- 149 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC--------------
Confidence 6899999998543322 22344567889999999988887 45566 8999999877632
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
..+...|+.+|...|.+++.++.+ .+++++++||+.++|+..... ........ .... ....+
T Consensus 150 --~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~---~~~~~~~~---~~~~-------~~~~~ 214 (249)
T PRK12825 150 --WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEAT---IEEAREAK---DAET-------PLGRS 214 (249)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccc---cchhHHhh---hccC-------CCCCC
Confidence 223456999999999988877665 589999999999999863221 11111111 0011 12238
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
++++|+++++..+++... +..|+++++..+
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 215 GTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred cCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 999999999999997643 458888877543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=165.44 Aligned_cols=217 Identities=16% Similarity=0.041 Sum_probs=147.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++++|||||+|+||+++++.|+++| ++|+++.|......+....... ...+.++.+|+.+... ..
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 9999998864322222222111 2357788999987632 24
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHH----HHHHHHHH-HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLA-KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~----~~~l~~~a-~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+||||+|...... ........++.|+.+ +..+++++ ++.+. ++|++||...+.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~--------------- 149 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE--------------- 149 (262)
T ss_pred CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC---------------
Confidence 899999998654322 122344567789888 66677777 66666 899999975442
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccH-------HHHHHHHHHcCCCeEEecC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRV-------VSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 234 (343)
...+...|+.+|...+.+++.++.+ .++++.++||+.++++......... ....+.... ..
T Consensus 150 -~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 220 (262)
T PRK13394 150 -ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM--------LG 220 (262)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH--------hc
Confidence 1223357999999999988888765 4799999999999987521100000 001111111 12
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+....++++++|++++++.++.... +..|++.++.
T Consensus 221 ~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 221 KTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred CCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 2334679999999999999998543 3456666553
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=163.30 Aligned_cols=216 Identities=18% Similarity=0.088 Sum_probs=151.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+++|+|+||||+|+||.++++.|+++| ++|++++|+............. ...+.++.+|+.|... .
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999 9999999853221211111111 2358889999998631 2
Q ss_pred CCCEEEEecCCCCc----cccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~----~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|.... .....++...+..|+.++..+++++. +.+. +||++||...++
T Consensus 83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~--------------- 147 (251)
T PRK12826 83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPR--------------- 147 (251)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhc---------------
Confidence 68999999986653 12233456678899999999988874 4445 899999987651
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..+...|+.+|..+|.+++.+..+ .++++.++||+.++|+......... +........++ ..+
T Consensus 148 ~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~ 215 (251)
T PRK12826 148 VGYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQ---WAEAIAAAIPL---------GRL 215 (251)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchH---HHHHHHhcCCC---------CCC
Confidence 12233457999999999999887665 4899999999999998643221111 11112122111 147
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
++++|+|+++..++.... ++.|++.++..
T Consensus 216 ~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 216 GEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred cCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 899999999999887643 45778776543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=162.59 Aligned_cols=230 Identities=13% Similarity=0.107 Sum_probs=160.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
|++|+||||||+|+||++++++|+++| ++|++++|+.... +.+.... ...+.++.+|+++... .+
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG-DRVVATARDTATL-ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 9999999853221 1111111 2357888999988632 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+||||||...... ..++....++.|+.++..+++.+ ++.+. ++|++||...+.
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~---------------- 141 (275)
T PRK08263 78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS---------------- 141 (275)
T ss_pred CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC----------------
Confidence 899999999654322 22455677899999987777765 45555 899999987764
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC-----ccHHHHHHHHHHcCCCeEEecCCce
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD-----GRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+++.++.+ .|+++.++||+.+.++...... ......+....... ..
T Consensus 142 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 212 (275)
T PRK08263 142 AFPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ---------WS 212 (275)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH---------HH
Confidence 2223356999999999988888764 6899999999988776432110 00111111111110 01
Q ss_pred eEee-eehHHHHHHHHHHHhcCC-CcceEec-CCCccCHHHHHHHHHHHh
Q 019309 238 TRSF-CYVSDMVDGLIRLMEGEN-TGPVNIG-NPGEFTMLELAETVKELI 284 (343)
Q Consensus 238 ~~~~-v~v~D~a~~i~~~~~~~~-~~~~~~~-~~~~~s~~e~~~~i~~~~ 284 (343)
...+ ++++|++++++.+++.+. .+.|+++ +++.+++.++.+.+.+.-
T Consensus 213 ~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 213 ERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred hccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 1234 789999999999999766 4455554 446889999999988753
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=172.47 Aligned_cols=224 Identities=14% Similarity=0.115 Sum_probs=151.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----------CCCceEEEEcccCCcc-----
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----------GHPRFELIRHDVTEPL----- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~----- 91 (343)
+++++||||||+|+||++++++|+++| ++|+++.|...........+. ...+++++.+|+.+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 367899999999999999999999999 999999985432211111100 0135889999999863
Q ss_pred cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
+.++|+||||+|.... ...+....+++|+.++.+++++|++.++ |||++||.+++... ..+. .....
T Consensus 157 LggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~~------~~~sk 224 (576)
T PLN03209 157 LGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPAA------ILNLF 224 (576)
T ss_pred hcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----cccc------chhhH
Confidence 4589999999985431 1123455678999999999999999998 99999998763211 0000 11223
Q ss_pred CchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 171 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
..|...|..+|+.+. +.|++++++|||+++++..... ....+............+...|+|++
T Consensus 225 ~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~-------------~t~~v~~~~~d~~~gr~isreDVA~v 287 (576)
T PLN03209 225 WGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYK-------------ETHNLTLSEEDTLFGGQVSNLQVAEL 287 (576)
T ss_pred HHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccc-------------cccceeeccccccCCCccCHHHHHHH
Confidence 457778888888775 4599999999999988742210 00111111111111235788999999
Q ss_pred HHHHHhcCC---CcceEecCCCcc---CHHHHHHHH
Q 019309 251 LIRLMEGEN---TGPVNIGNPGEF---TMLELAETV 280 (343)
Q Consensus 251 i~~~~~~~~---~~~~~~~~~~~~---s~~e~~~~i 280 (343)
++.++.+.. ..++.+.++... ++.++++.+
T Consensus 288 VvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 999998554 558888776543 444444443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=160.72 Aligned_cols=215 Identities=19% Similarity=0.145 Sum_probs=147.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~ 94 (343)
++++|||||+|+||+++++.|+++| ++|++++|..... +.+...+ ...++.++.+|+.+.. +.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAGA-EAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999999 8999999853221 1121111 1246888999999874 235
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+++....... ..+....+..|+.++..+++.+ ++.++ ++|++||...+..
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~--------------- 143 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA--------------- 143 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC---------------
Confidence 8999999986543221 2233456678999888777776 55666 8999999866532
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeE-------EecCC
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLT-------VQKPG 235 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 235 (343)
......|+.+|...|.+++.+..+ .+++++++||+.++++.. ...+.......... ....+
T Consensus 144 -~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (255)
T TIGR01963 144 -SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLV--------EKQIADQAKTRGIPEEQVIREVMLPG 214 (255)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHH--------HHHHHhhhcccCCCchHHHHHHHHcc
Confidence 112356999999999988877654 389999999999998741 11111111111110 01122
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....++++++|+|++++.+++... ++.|++.++.
T Consensus 215 ~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 215 QPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGW 252 (255)
T ss_pred CccccCcCHHHHHHHHHHHcCccccCccceEEEEcCcc
Confidence 345579999999999999997642 3467887654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=161.38 Aligned_cols=231 Identities=16% Similarity=0.068 Sum_probs=159.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|+++.|............. ...++.++.+|+.++..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999 999999985322111111111 12467888999987631
Q ss_pred -CCCCEEEEecCCCCc--c---ccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~--~---~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||++|.... . ....+....+..|+.++..+++++.+ .+. +||++||...+.
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 151 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------ 151 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC------------
Confidence 268999999985421 1 11223456778899999999887654 233 899999987652
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+.+.|+.+|...|.+++.+..+. ++++.++||+.+.++....... ............ ..
T Consensus 152 ----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~~---------~~ 216 (276)
T PRK05875 152 ----THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE--SPELSADYRACT---------PL 216 (276)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc--CHHHHHHHHcCC---------CC
Confidence 22334679999999999999887664 6899999999887764221100 011111111111 11
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc----CHHHHHHHHHHHhC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF----TMLELAETVKELIN 285 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~----s~~e~~~~i~~~~g 285 (343)
..+++++|+++++..+++.+. +..+++.++..+ +..|+++.+....+
T Consensus 217 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 236779999999999998754 457899888776 77788777776544
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=162.74 Aligned_cols=224 Identities=15% Similarity=0.111 Sum_probs=151.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~----------- 92 (343)
|+++++|||||+|+||+++++.|.++| ++|++++|............ ....++.++.+|+.|+..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 356889999999999999999999999 99999988532221111111 112468899999998642
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|+||||+|....... ..+....++.|+.++..+++.+ ++.+. ++|++||...+.
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~-------------- 145 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV-------------- 145 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC--------------
Confidence 358999999986543222 2334556789999988888775 55555 899999975432
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHH---HHhCCceEEEEeccccCCCCCCCC---------ccHHHHHHHHHHcCCCeEE
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYH---RQHGIQIRIARIFNTYGPRMNIDD---------GRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~---~~~~~~~~i~R~~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 231 (343)
...+...|+.+|...|.+++.++ ...+++++++||+.+.++...... .......+.......
T Consensus 146 --~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 219 (280)
T PRK06914 146 --GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI---- 219 (280)
T ss_pred --CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH----
Confidence 12234579999999999888876 345899999999999887422110 011111111111100
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHH
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTML 274 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~ 274 (343)
......+++++|+|++++.+++++. ...|+++++..+++.
T Consensus 220 ---~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ---NSGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred ---hhhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 0112347889999999999999876 446777766655544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=163.46 Aligned_cols=219 Identities=12% Similarity=0.033 Sum_probs=146.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|+||||||+|+||++++++|.++| ++|++++|+.... ..+... ...++..+.+|+.|... .+
T Consensus 2 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 2 SSMKTWLITGVSSGFGRALAQAALAAG-HRVVGTVRSEAAR-ADFEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCCCEEEEecCCChHHHHHHHHHHhCc-CEEEEEeCCHHHH-HHHHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 456889999999999999999999999 9999999853221 111111 12367888999988632 25
Q ss_pred CCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||........ .+....++.|+.++.++++++. +.+. ++|++||...+.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~---------------- 142 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI---------------- 142 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC----------------
Confidence 89999999975432222 2334568999999999998853 3444 899999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC---ccHHHH---HHHHHHcCCCeEEecCCc
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD---GRVVSN---FIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...|.+++.++.+ .|++++++||+.+.++...... ...... .+........ . .
T Consensus 143 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--- 216 (277)
T PRK06180 143 TMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE-A--K--- 216 (277)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH-h--h---
Confidence 2223467999999999988888765 4899999999999876421100 001111 1111110000 0 0
Q ss_pred eeEeeeehHHHHHHHHHHHhcCCCcceEecCCCc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~~~~ 270 (343)
....+..++|+|++++.+++.+.....++.+++.
T Consensus 217 ~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~~ 250 (277)
T PRK06180 217 SGKQPGDPAKAAQAILAAVESDEPPLHLLLGSDA 250 (277)
T ss_pred ccCCCCCHHHHHHHHHHHHcCCCCCeeEeccHHH
Confidence 1123567899999999999987655555554443
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=158.98 Aligned_cols=217 Identities=18% Similarity=0.086 Sum_probs=145.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+++||||||+|+||.+++++|+++| ++|++++|............. ...++.++.+|+.++.. .
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999 999999986432221111111 12468889999998632 2
Q ss_pred CCCEEEEecCCCCccccc----cChHHHHHHHHHH----HHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~----~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|........ .+....+..|+.+ +..++.++++.+. +||++||...+.
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~--------------- 145 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV--------------- 145 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence 689999999865432222 2233456778888 4445555556666 899999986653
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeE-------EecC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLT-------VQKP 234 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 234 (343)
+..+.+.|+.+|...+.+.+.+..+ .++++.++||+.+++|.... . +........+. .+..
T Consensus 146 -~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 216 (258)
T PRK12429 146 -GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK----Q----IPDLAKERGISEEEVLEDVLLP 216 (258)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh----h----hhhhccccCCChHHHHHHHHhc
Confidence 2233467999999999888877654 37999999999999875211 1 11110000000 0111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
......+++++|+|+++..++.... +..|++.++
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 2233569999999999999997643 345666654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=160.87 Aligned_cols=224 Identities=15% Similarity=0.111 Sum_probs=152.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
+++++|||||+|+||.++++.|.++| ++|++++|+..... .+...+ ...+.++.+|+.+... ..+
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKPARAR-LAALEI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHH-HHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999 99999988543221 122222 2358889999987622 368
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc------CCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~------~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||++|...... ...+....++.|+.++..+++++... +.++|++||.....
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 145 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR---------------- 145 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC----------------
Confidence 99999998653211 22345667899999999999988643 24799999964321
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++|+.++++..... ...+..... ...+......+.......++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 223 (257)
T PRK07067 146 GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQV-DALFARYEN-RPPGEKKRLVGEAVPLGRMG 223 (257)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhh-hhhhhhccC-CCHHHHHHHHhhcCCCCCcc
Confidence 2224467999999999999888764 589999999999999752110 000000000 00000000111222345689
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
+++|+|++++.++.... +.++++.+++.+|
T Consensus 224 ~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 224 VPDDLTGMALFLASADADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred CHHHHHHHHHHHhCcccccccCcEEeecCCEeCC
Confidence 99999999999998653 4688888876543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=154.70 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=156.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
|+++++||||+|+||.++++.|.++| ++|++++|+..... .+...+...++.++.+|+.+... .++
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDAAALA-AFADALGDARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999 99999998542221 12222223468889999988732 258
Q ss_pred CEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|........ ......+..|+.++..+++++. +.+. +||++||...+..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 142 (257)
T PRK07074 79 DVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA---------------- 142 (257)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC----------------
Confidence 9999999865432211 1223446788888888887773 3444 8999999654311
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
.....|+.+|...|.+++.++.+. |+++..+||++++++....... ....+....... ....++++
T Consensus 143 -~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~ 211 (257)
T PRK07074 143 -LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVA-ANPQVFEELKKW---------YPLQDFAT 211 (257)
T ss_pred -CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccc-cChHHHHHHHhc---------CCCCCCCC
Confidence 012359999999999999888654 6999999999998875221100 011122222111 12346899
Q ss_pred hHHHHHHHHHHHhcCC---Cc-ceEecCCCccCHHHHHHHHHH
Q 019309 244 VSDMVDGLIRLMEGEN---TG-PVNIGNPGEFTMLELAETVKE 282 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~s~~e~~~~i~~ 282 (343)
++|+++++..++.... .| .+++.++...+..|+++.+.+
T Consensus 212 ~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 212 PDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred HHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 9999999999997532 34 567788888999999988754
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=157.17 Aligned_cols=215 Identities=13% Similarity=0.094 Sum_probs=145.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+++++||||+|+||+++++.|.++| ++|+++.|+.....+...... ....+.++.+|+++... .
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 345799999999999999999999999 899988875322111111111 11357788999998632 3
Q ss_pred CCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||....... ..+....++.|+.++.++++++. +.+. +||++||...+.
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~--------------- 151 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR--------------- 151 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC---------------
Confidence 68999999986543222 12334567899999999988864 3334 899999987764
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCC-CCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPR-MNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++.+. |+++.++|||.+.++. ... .......++....... ......
T Consensus 152 -~~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~ 222 (274)
T PRK07775 152 -QRPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSL-PAEVIGPMLEDWAKWG-------QARHDY 222 (274)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccC-ChhhhhHHHHHHHHhc-------cccccc
Confidence 22234579999999999999887664 8999999998875542 111 1111122222222111 112345
Q ss_pred eeehHHHHHHHHHHHhcCC-CcceEec
Q 019309 241 FCYVSDMVDGLIRLMEGEN-TGPVNIG 266 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~-~~~~~~~ 266 (343)
+++++|+|++++.+++++. ..+||+.
T Consensus 223 ~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 223 FLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 8999999999999998765 3366664
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=153.36 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=146.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
|++|+|+||||+|+||.++++.|.++| ++|+++.|+............ ...++.++.+|+.++. ..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 466899999999999999999999999 899999986432211111111 1246888899998863 13
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|...... ...+....+..|+.+..++++++. +.++ +||++||.....
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~--------------- 146 (246)
T PRK05653 82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT--------------- 146 (246)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------
Confidence 5799999998654321 122334567899999998888874 5565 899999975432
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...|.+++.+..+ .++++.++||+.++++.... ............ ++ ...+
T Consensus 147 -~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~--~~-------~~~~ 212 (246)
T PRK05653 147 -GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG----LPEEVKAEILKE--IP-------LGRL 212 (246)
T ss_pred -CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh----hhHHHHHHHHhc--CC-------CCCC
Confidence 1223456999999999988887754 47999999999999986211 111111111111 11 1457
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
++++|+++++..++.... +..|++.++.
T Consensus 213 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 213 GQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 889999999999997533 3477777764
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=154.23 Aligned_cols=215 Identities=13% Similarity=0.065 Sum_probs=148.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 93 (343)
|+|+++||||+|+||+++++.|.++| ++|++++|............+ ...++.++.+|++++.. .
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG-FDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999 999999885332211111111 12368899999998631 3
Q ss_pred CCCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHHHHc-----C-----C-eEEEEeCCcccCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV-----G-----A-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a~~~-----~-----~-r~i~~SS~~v~~~~~~~~~ 156 (343)
.+|+|||++|..... ....+....++.|+.++..+++++... + . +||++||...+.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------- 152 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM------- 152 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc-------
Confidence 689999999864321 122345567899999999998887542 1 3 699999977642
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+..+.+.|+.+|...|.+++.++.+ +|+++.++||+.+.++.... ....+......+ ..+
T Consensus 153 ---------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~----~~~~~~~~~~~~-~~~--- 215 (256)
T PRK12745 153 ---------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP----VTAKYDALIAKG-LVP--- 215 (256)
T ss_pred ---------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc----cchhHHhhhhhc-CCC---
Confidence 2223467999999999999988764 58999999999998875321 111221111111 111
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
...+.++.|+++++..++.... +..|++.++..+
T Consensus 216 ----~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 216 ----MPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred ----cCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCeec
Confidence 1246789999999999887542 447888776543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=153.33 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=143.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-C-CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-G-HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~d~~~~~------------~ 92 (343)
+.+|+++||||+|+||.++++.|.++| ++|++++|... .......+ . ...+.++.+|+.+.. .
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSEL--VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchH--HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999 99999988531 11111111 1 235778899998852 2
Q ss_pred CCCCEEEEecCCCCc--c---ccccChHHHHHHHHHHHHHH----HHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~--~---~~~~~~~~~~~~nv~~~~~l----~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||.... . ....+....++.|+.++..+ +..+++.+. ++|++||...++.
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 150 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------ 150 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC------------
Confidence 369999999984311 1 12223445667887776644 444455665 8999999876531
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCC---------CCCccHHHHHHHHHHcCCCeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMN---------IDDGRVVSNFIAQALRGEPLT 230 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~ 230 (343)
+..+|+.+|...+.+++.++.+. ++++..++|+++++|... .........++.....+.++.
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T PRK12823 151 ------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMK 224 (260)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcc
Confidence 12459999999999999988765 899999999999997410 001122333333333332222
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
-+.+++|+|++++.++.... +..+++.+++
T Consensus 225 ---------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 225 ---------RYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred ---------cCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 24468999999999987543 3467776653
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=154.50 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=150.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+++++++||||+|+||+++++.|.++| ++|++++|+.....+....+.. ...+.++.+|+.|... .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999 9999988854322211111111 1357788999988632 2
Q ss_pred CCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|+|||+||....... .++....++.|+.++..+++++. +.+ .++|++||...+.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~-------------- 148 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV-------------- 148 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc--------------
Confidence 58999999986432222 22345667899999999888874 343 3899999987663
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.+..+ .|+++++++|+.+.++.... ..................+......+
T Consensus 149 --~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PRK05876 149 --PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN----SERIRGAACAQSSTTGSPGPLPLQDD 222 (275)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc----hhhhcCcccccccccccccccccccc
Confidence 3344567999999866666555543 48999999999988764211 00000000001111112222234567
Q ss_pred eeehHHHHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHh
Q 019309 241 FCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
+++++|+|++++.+++++. .+.+. ......++.+.+.+..
T Consensus 223 ~~~~~dva~~~~~ai~~~~--~~~~~--~~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 223 NLGVDDIAQLTADAILANR--LYVLP--HAASRASIRRRFERID 262 (275)
T ss_pred CCCHHHHHHHHHHHHHcCC--eEEec--ChhhHHHHHHHHHHHH
Confidence 8999999999999998643 33333 3344555555554443
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-20 Score=160.14 Aligned_cols=215 Identities=14% Similarity=0.071 Sum_probs=148.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++++|||||+|+||++++++|+++| ++|++++|......+....... ..++.++.+|+.|... ..
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 9999998853322222222111 2357789999998632 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcC-------CeEEEEeCCcccCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-------ARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~-------~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
+|+|||+||...... ...++...++.|+.++.+++.++ .+.+ .++|++||...+..
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 154 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA--------- 154 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---------
Confidence 899999999765322 22344556889999999876663 3332 27999999877642
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC-----CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG-----IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~-----~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
..+...|+.+|...|.+++.+..+.+ +++..+.|+.+..+ +.....+++..+.++
T Consensus 155 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~-------------~~~~~~~~~~~~~~~ 214 (287)
T PRK06194 155 -------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG-------------IWQSERNRPADLANT 214 (287)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc-------------cccccccCchhcccC
Confidence 22335799999999999999887654 45555666544332 122223445555666
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINP 286 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~ 286 (343)
+.+.+++++++|++..+.... .++..|+++.+.+.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~--------------~~s~~dva~~i~~~~~~ 252 (287)
T PRK06194 215 APPTRSQLIAQAMSQKAVGSG--------------KVTAEEVAQLVFDAIRA 252 (287)
T ss_pred ccccchhhHHHHHHHhhhhcc--------------CCCHHHHHHHHHHHHHc
Confidence 677888999988887754321 17899999999887743
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=153.10 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=145.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
..++++|||||+|+||.++++.|+++| ++|++++|+...............++.++.+|+.++.. ..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999 99999999643222211211112357899999998732 25
Q ss_pred CCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||++|...... ..++....++.|+.++..+++.+. +.+. +||++||...+.
T Consensus 82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 146 (251)
T PRK07231 82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR--------------- 146 (251)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC---------------
Confidence 899999998643211 223445678889888777776665 3455 899999987764
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+++.++.+. ++++..++|+.+.++..................... ....+
T Consensus 147 -~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 216 (251)
T PRK07231 147 -PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI---------PLGRL 216 (251)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC---------CCCCC
Confidence 33345679999999999888887653 789999999998765421100000001111111111 12246
Q ss_pred eehHHHHHHHHHHHhcCC---Ccc-eEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TGP-VNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~~-~~~~~~~ 269 (343)
++++|+|++++.++.... .|. +.+.++.
T Consensus 217 ~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 217 GTPEDIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred cCHHHHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 899999999999997543 354 4555443
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=154.81 Aligned_cols=217 Identities=12% Similarity=-0.035 Sum_probs=146.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch-hhhcC-CCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-KKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
.+++||||||+|+||++++++|+++| ++|++..|......... ..... ..++.++.+|+.++. ..
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 88877765321111111 11111 135678889998763 23
Q ss_pred CCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
++|+|||+||......... .....+..|+.+...+++++.+. +.+||++||...+. +
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 147 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------P 147 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------C
Confidence 6899999998643322221 12456789999989988888753 23899999988763 4
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
..+.+.|+.+|...|.+++.++.+. ++.+.+++|+++.++..... .............. .. ....++++
T Consensus 148 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~-~~~~~~~~~~~~~~--~~------~~~~~~~~ 218 (252)
T PRK06077 148 AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESL-FKVLGMSEKEFAEK--FT------LMGKILDP 218 (252)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhh-hhcccccHHHHHHh--cC------cCCCCCCH
Confidence 4455789999999999999988775 68999999999887641100 00000001111110 11 12258999
Q ss_pred HHHHHHHHHHHhcCC--CcceEecCCCc
Q 019309 245 SDMVDGLIRLMEGEN--TGPVNIGNPGE 270 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~--~~~~~~~~~~~ 270 (343)
+|+|++++.+++... ++.|++.++..
T Consensus 219 ~dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 219 EEVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHhCccccCCCeEEecCCee
Confidence 999999999997554 56888888754
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=153.98 Aligned_cols=212 Identities=20% Similarity=0.181 Sum_probs=150.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-C-CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-G-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~d~~~~~~------------~ 93 (343)
++|+++||||+|+||.+++++|+++| ++|++++|...... ...+.+ . ...+.++.+|+.+... .
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAE-RVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999 99999998532211 111111 1 2356788999998742 2
Q ss_pred CCCEEEEecCCCCcc-------ccccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~-------~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.+|+|||+||..... ....+....+..|+.++.++++++... +. +||++||...|.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 150 (250)
T PRK07774 83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------ 150 (250)
T ss_pred CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------------
Confidence 589999999964311 122344566789999999998888753 33 899999987763
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+.+.|+.+|...|.+++.+.++. ++++.+++|+.+.++..... ....+.....++.+..
T Consensus 151 -------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~---~~~~~~~~~~~~~~~~-------- 212 (250)
T PRK07774 151 -------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV---TPKEFVADMVKGIPLS-------- 212 (250)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc---CCHHHHHHHHhcCCCC--------
Confidence 12569999999999999988764 79999999998887653211 1112333333333221
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
-+.+++|++++++.++.... ++.|++.+++.++
T Consensus 213 -~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 213 -RMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQIIR 249 (250)
T ss_pred -CCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeecc
Confidence 14568999999999987642 4578988876543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=157.14 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=147.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+++++++||||+|+||.++++.|+++| ++|+++.|+.....+.+...+. ..++.++.+|+.++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356899999999999999999999999 9999988854322222211111 2357889999998632
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
.++|+|||+||... ....++...++.|+.++.++++++.+. +.++|++||........ .+ +...
T Consensus 83 ~~~d~vi~~ag~~~--~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~-------~~~~ 149 (248)
T PRK07806 83 GGLDALVLNASGGM--ESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK-------TMPE 149 (248)
T ss_pred CCCcEEEECCCCCC--CCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc-------CCcc
Confidence 25899999997542 123345567789999999999999864 23899999964421110 01 1112
Q ss_pred CCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 246 (343)
..+|+.+|..+|.+++.++.+ .++++.+++|+.+-++... .+.............. ....+++++|
T Consensus 150 ~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~d 218 (248)
T PRK07806 150 YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----TLLNRLNPGAIEARRE-------AAGKLYTVSE 218 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh----hhhccCCHHHHHHHHh-------hhcccCCHHH
Confidence 467999999999999988764 4788999988776654210 0000000000000000 1236899999
Q ss_pred HHHHHHHHHhcCC--CcceEecCCCcc
Q 019309 247 MVDGLIRLMEGEN--TGPVNIGNPGEF 271 (343)
Q Consensus 247 ~a~~i~~~~~~~~--~~~~~~~~~~~~ 271 (343)
++++++.+++... +..|++++++.+
T Consensus 219 va~~~~~l~~~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 219 FAAEVARAVTAPVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHHHhhccccCccEEEecCccce
Confidence 9999999999664 457888887654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=152.26 Aligned_cols=217 Identities=17% Similarity=0.090 Sum_probs=149.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
..+|+||||||+|+||.+++++|+++| ++|++++|....... ....+. ..++.++.+|+.+.. .
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~-~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAA-AAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-HHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999 999999885422211 111121 134788899999863 2
Q ss_pred CCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|+|||++|........ .+....+..|+.++..+++++.+. +. ++|++||.....
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------------- 151 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-------------- 151 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc--------------
Confidence 3589999999865432222 233556779999999999988643 44 899999975431
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++. +.|+++.++||+.+.++........ ..+........+ ...
T Consensus 152 --~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~~~~~---------~~~ 218 (255)
T PRK07523 152 --ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD--PEFSAWLEKRTP---------AGR 218 (255)
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC--HHHHHHHHhcCC---------CCC
Confidence 233456799999999999988876 4589999999999988752110000 111111111111 123
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
+.+++|+|++++.++.... +..+++.++...|
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 6679999999999997543 3477777765543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=159.31 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=148.0
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecCCCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPAS 106 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~~~~ 106 (343)
|+|+||||.+|+++++.|++.+ ++|+++.|.. +......+...+++++.+|+.|. ++.++|+||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 7999999999999999999988 9999999954 22222223335788999999876 4679999999886432
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
........+++++|++.|+ +||+.|....+. +. ....|..+.-..|...|+.++
T Consensus 77 ------------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~--------~~-----~~~~p~~~~~~~k~~ie~~l~ 131 (233)
T PF05368_consen 77 ------------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYD--------ES-----SGSEPEIPHFDQKAEIEEYLR 131 (233)
T ss_dssp ------------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTT--------TT-----TTSTTHHHHHHHHHHHHHHHH
T ss_pred ------------hhhhhhhhhHHHhhhccccceEEEEEeccccc--------cc-----ccccccchhhhhhhhhhhhhh
Confidence 1134456789999999999 666544333321 00 112222345567777787775
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHH--HHcCC--CeEEecCCceeEeee-ehHHHHHHHHHHHhcCC-
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQ--ALRGE--PLTVQKPGTQTRSFC-YVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~v-~v~D~a~~i~~~~~~~~- 259 (343)
+ .+++++++|++..+.... ..+.. ...+. .+.+.++++....++ +.+|++++++.++..+.
T Consensus 132 ~----~~i~~t~i~~g~f~e~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~ 198 (233)
T PF05368_consen 132 E----SGIPYTIIRPGFFMENLL---------PPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEK 198 (233)
T ss_dssp H----CTSEBEEEEE-EEHHHHH---------TTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGG
T ss_pred h----ccccceeccccchhhhhh---------hhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHH
Confidence 4 499999999987664321 11111 11221 356667777666664 99999999999999865
Q ss_pred C--c-ceEecCCCccCHHHHHHHHHHHhCCCcceE
Q 019309 260 T--G-PVNIGNPGEFTMLELAETVKELINPGIEIK 291 (343)
Q Consensus 260 ~--~-~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~ 291 (343)
. + .++++ ++.+|+.|+++.+.+.+|++.+..
T Consensus 199 ~~~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~y~ 232 (233)
T PF05368_consen 199 HNNGKTIFLA-GETLTYNEIAAILSKVLGKKVKYV 232 (233)
T ss_dssp TTEEEEEEEG-GGEEEHHHHHHHHHHHHTSEEEEE
T ss_pred hcCCEEEEeC-CCCCCHHHHHHHHHHHHCCccEEe
Confidence 2 3 45554 489999999999999999876543
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=150.92 Aligned_cols=210 Identities=17% Similarity=0.124 Sum_probs=146.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cC--CCceEEEEcccCCccc---------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IG--HPRFELIRHDVTEPLL--------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~~~d~~~~~~--------- 92 (343)
+++|+|+||||+|+||+++++.|+++| ++|+++.|......+..... .. ...+.++.+|+.+...
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV 82 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 99998876433222222211 11 2367889999988732
Q ss_pred ---CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH-----HcCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~-----~~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+|||++|...... ...+....+..|+.++..+++++. +.+. ++|++||...+..
T Consensus 83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 153 (249)
T PRK12827 83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG--------- 153 (249)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC---------
Confidence 36899999998654211 223445678899999999999987 4455 8999999876532
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
..+...|+.+|...+.+++.++.+ .+++++++||+++.++..... ... .......+.
T Consensus 154 -------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~---~~~---~~~~~~~~~------- 213 (249)
T PRK12827 154 -------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNA---APT---EHLLNPVPV------- 213 (249)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccccc---chH---HHHHhhCCC-------
Confidence 223456999999999988887765 389999999999999753211 111 111121111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+.+++|+++++..++.... .| .+++.++
T Consensus 214 --~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 214 --QRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred --cCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 124578999999999886533 33 5566543
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=154.98 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=144.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcC-CCceEEEEcccCCccc-------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------- 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------- 92 (343)
++++|+||||+|+||+++++.|+++| ++|.++ .|.............. ...+.++.+|+.|...
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDG-ALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999 888775 4532111111111111 2357889999998632
Q ss_pred -----CCCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHHc--CC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 -----IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 -----~~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~~--~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|+|||++|........+ .....++.|+.++.++++++.+. .. ++|++||..++.
T Consensus 84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----------- 152 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----------- 152 (254)
T ss_pred cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC-----------
Confidence 25899999998654322222 22456779999999999988753 33 899999988763
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...|.+.+.+..+ .++++.+++|+.+.++....... ...+........ .
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~---~~~~~~~~~~~~--------~ 216 (254)
T PRK12746 153 -----GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD---DPEIRNFATNSS--------V 216 (254)
T ss_pred -----CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc---ChhHHHHHHhcC--------C
Confidence 2233467999999999988887764 47999999999998875211000 011111111111 1
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
...+++++|+++++..++..+. ++.|++.++
T Consensus 217 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 217 FGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred cCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 1246789999999998887643 457888765
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=151.37 Aligned_cols=212 Identities=15% Similarity=0.079 Sum_probs=146.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
.+++++||||+|+||++++++|.++| +.|+++.+......+.....+. ..++.++.+|+.++.. .
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999 8888765432221112211111 2358889999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||+||...... ......+.++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 148 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA--------------- 148 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC---------------
Confidence 4899999998754322 1245567789999999998888864 333 899999975542
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
...+...|+.+|...+.+++.+..+. ++++.+++|+.+.++.... ...........+. ....+
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----~~~~~~~~~~~~~---------~~~~~ 214 (247)
T PRK12935 149 -GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE----VPEEVRQKIVAKI---------PKKRF 214 (247)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh----ccHHHHHHHHHhC---------CCCCC
Confidence 11234579999999999888877654 8999999999997754211 1111111221111 12357
Q ss_pred eehHHHHHHHHHHHhcCC---CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~~~~~~~~~ 269 (343)
.+++|++++++.+++... ++.|++.++.
T Consensus 215 ~~~edva~~~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 215 GQADEIAKGVVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred cCHHHHHHHHHHHcCcccCccCCEEEeCCCc
Confidence 899999999999997652 5688888763
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=152.78 Aligned_cols=205 Identities=15% Similarity=0.116 Sum_probs=142.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 92 (343)
++.+|+||||||+|+||++++++|+++| ++|++++|+.... +.+...+. ..++.++.+|+++...
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAARTAERL-DEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999 9999999854321 11211111 2357889999987632
Q ss_pred -CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||..... ....+....+..|+.++..+++++... +.+||++||...+.
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------- 146 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH------------- 146 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc-------------
Confidence 3689999999864321 123445677899999999999988642 23899999986642
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc-------cHHHHHHHHHHcCCCeEEe
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG-------RVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 232 (343)
+..+...|+.+|...|.+++.++.+ .++++.+++|+.++++....... .-........... +
T Consensus 147 ---~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 218 (258)
T PRK07890 147 ---SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--S--- 218 (258)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc--C---
Confidence 2334467999999999999988865 37999999999999985211000 0001111111111 1
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhc
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
....+.+++|++++++.+++.
T Consensus 219 ----~~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 219 ----DLKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred ----CccccCCHHHHHHHHHHHcCH
Confidence 112367889999999999975
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=155.75 Aligned_cols=207 Identities=18% Similarity=0.114 Sum_probs=140.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
++++++||||+|+||++|++.|+++| ++|+++.|+.....+.........++.++.+|+.|+.. .++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999 99999988643222222211112457899999998632 369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|...... ...+....+..|+.++..+.+.+ ++.+. ++|++||...+. +
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------------~ 146 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------------G 146 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc----------------C
Confidence 99999999654322 12233456789999887666554 45565 899999986542 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCcc-HHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGR-VVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
..+...|+.+|...+.+++.++.+. +++++++||+.++++........ .....+.....+.. ....++
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 218 (252)
T PRK06138 147 GRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARH--------PMNRFG 218 (252)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcC--------CCCCCc
Confidence 1223569999999999999887665 89999999999988752110000 00011111111110 112368
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
+++|++++++.++....
T Consensus 219 ~~~d~a~~~~~l~~~~~ 235 (252)
T PRK06138 219 TAEEVAQAALFLASDES 235 (252)
T ss_pred CHHHHHHHHHHHcCchh
Confidence 89999999999998754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=154.71 Aligned_cols=221 Identities=19% Similarity=0.155 Sum_probs=144.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
++++++|||||+|+||++++++|+++| ++|+++.|+.... +.+.......++.++.+|+.++. ..+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDVSEAAL-AATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 367899999999999999999999999 9999999853222 12222222225688999999863 136
Q ss_pred CCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcCC--eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|+|||++|..... ....+....++.|+.++..+++++. +.+. +++++||.....
T Consensus 87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~-------------- 152 (264)
T PRK12829 87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL-------------- 152 (264)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc--------------
Confidence 99999999865221 1223446778999999999888773 3333 577777754321
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe---cCCce
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ---KPGTQ 237 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 237 (343)
...+...|+.+|...|.+++.++.+. +++++++||++++|+... .......... ........ .....
T Consensus 153 --~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~ 225 (264)
T PRK12829 153 --GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMR----RVIEARAQQL-GIGLDEMEQEYLEKIS 225 (264)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHH----HHhhhhhhcc-CCChhHHHHHHHhcCC
Confidence 11223469999999999998887653 799999999999998621 1111100000 00000000 00001
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
...+++++|+++++..++.... +..|++.++..
T Consensus 226 ~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 226 LGRMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 1248999999999999886432 34777777643
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=160.11 Aligned_cols=251 Identities=20% Similarity=0.162 Sum_probs=178.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCcc--chhhhc--------------CCCceEEEEcccC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKD--NLKKWI--------------GHPRFELIRHDVT 88 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~--~~~~~~--------------~~~~~~~~~~d~~ 88 (343)
-.+++|||||||||+|.-+++.|++.-+ .++..+.|.+.+... .+.... ...++..+.||+.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 3689999999999999999999999762 478888886554321 111111 1257888999998
Q ss_pred CcccC-----------CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCC
Q 019309 89 EPLLI-----------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 89 ~~~~~-----------~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~ 155 (343)
++.+. ++|+|||+|+... ..+.......+|..|+.++++.|++... -++|+|++++. .....
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvr---Fde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n--~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVR---FDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN--CNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeec---cchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee--ccccc
Confidence 77543 6999999997543 3444556778999999999999999876 59999999876 21111
Q ss_pred CCCCCCCCCC--------------------------CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCC
Q 019309 156 QPETYWGNVN--------------------------PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209 (343)
Q Consensus 156 ~~e~~~~~~~--------------------------~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~ 209 (343)
+.|...+... .....+.|.-+|..+|.++.+... +++++|+||+.|......
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 2221100000 011235699999999999998754 689999999999988765
Q ss_pred CCCccHHHH------HHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc--CC-----CcceEecCC--CccCHH
Q 019309 210 IDDGRVVSN------FIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG--EN-----TGPVNIGNP--GEFTML 274 (343)
Q Consensus 210 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~--~~-----~~~~~~~~~--~~~s~~ 274 (343)
+-. +|+.+ ++-...+|.--.+..+.+...++|.+|.++.+++.+.-+ .. ..+||++++ .+++|.
T Consensus 243 P~p-GWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~ 321 (467)
T KOG1221|consen 243 PFP-GWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWG 321 (467)
T ss_pred CCC-CccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHH
Confidence 542 22222 222233343334456788889999999999999977621 11 238999876 489999
Q ss_pred HHHHHHHHHhC
Q 019309 275 ELAETVKELIN 285 (343)
Q Consensus 275 e~~~~i~~~~g 285 (343)
++.+...+.+.
T Consensus 322 ~~~e~~~~~~~ 332 (467)
T KOG1221|consen 322 DFIELALRYFE 332 (467)
T ss_pred HHHHHHHHhcc
Confidence 99999999874
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=152.38 Aligned_cols=222 Identities=17% Similarity=0.073 Sum_probs=146.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|++|||||+|+||++++++|.++| ++|++++|......+.........++.++.+|+.|... .+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999 99999987532211111111112368899999998632 26
Q ss_pred CCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a~~----~~-~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|+|||+||..... ....+....++.|+.++..+++++.+ .+ .++|++||....-
T Consensus 95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-------------- 160 (280)
T PLN02253 95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI-------------- 160 (280)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc--------------
Confidence 99999999865321 11234567889999999998887753 23 3789998865421
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC--CccHHHHHHHH---HHcCCCeEEecCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID--DGRVVSNFIAQ---ALRGEPLTVQKPG 235 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~ 235 (343)
+......|+.+|...|.+.+.++.+. ++++..++|+.+.++..... ........+.. ..... ..+
T Consensus 161 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l---- 233 (280)
T PLN02253 161 --GGLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKN-ANL---- 233 (280)
T ss_pred --cCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcC-CCC----
Confidence 11122469999999999999888764 79999999999987642110 00000111111 11110 010
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
....++++|+|++++.++.... +..+++.++...+
T Consensus 234 --~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~ 272 (280)
T PLN02253 234 --KGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCT 272 (280)
T ss_pred --cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhc
Confidence 0124789999999999987543 3466776664443
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=151.54 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=150.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
.+|+||||||+|+||+++++.|.++| ++|++..+..... .+.....+. ..++.++.+|+.+.. +
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG-ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 9998877643211 111211211 235778899999862 2
Q ss_pred CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|+|||+||..... ...++....++.|+.++..+++++... +.++|++||...|..
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 198 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP-------------- 198 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC--------------
Confidence 3699999999864211 123456678999999999999999753 348999999987742
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
......|+.+|...+.+++.++.+ .|+++.+++|+.+.++..... ......+....... + ...+
T Consensus 199 --~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~--~~~~~~~~~~~~~~--p-------~~r~ 265 (300)
T PRK06128 199 --SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG--GQPPEKIPDFGSET--P-------MKRP 265 (300)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC--CCCHHHHHHHhcCC--C-------CCCC
Confidence 223356999999999999888765 489999999999999853211 01112222221111 1 1235
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|++.+++.++.... +..+++.++..+
T Consensus 266 ~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 266 GQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 688999999999987543 447788877554
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=152.86 Aligned_cols=222 Identities=18% Similarity=0.125 Sum_probs=145.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------~ 92 (343)
|+++||||||+|+||.++++.|.++| ++|++++|+..........+. ....+.++.+|+++.. .
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 999999885432221111111 1235889999999762 1
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcc-cCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEV-YGDPLIHPQPETYW 161 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v-~~~~~~~~~~e~~~ 161 (343)
..+|+|||+||....... ..+....++.|+.++..++.++. +.+ .++|++||... ++
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~------------ 147 (259)
T PRK12384 80 GRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVG------------ 147 (259)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccC------------
Confidence 368999999986543221 22345667889998776666554 345 38999999653 22
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc--CCCeEEecCCc
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR--GEPLTVQKPGT 236 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 236 (343)
......|+.+|.+.+.+++.++. ..|+++.++||+.++++... ...+..+...... ......+.+..
T Consensus 148 -----~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (259)
T PRK12384 148 -----SKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMF---QSLLPQYAKKLGIKPDEVEQYYIDKV 219 (259)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhh---hhhhHHHHHhcCCChHHHHHHHHHhC
Confidence 11235699999999988888775 36899999999998876421 1122222111000 00000011222
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+++++|+++++..++.... +..|++.+++.
T Consensus 220 ~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 220 PLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred cccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 33467899999999999987543 34688887654
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=149.65 Aligned_cols=204 Identities=15% Similarity=0.082 Sum_probs=144.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++++||||||+|+||+++++.|+++| ++|++++|+.....+..... ....++++.+|+.|.. ..++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQTLPGV-PADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEeCChHhHHHHHHHH-hhcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999 99999998643322222222 2346778889998752 2269
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|...... ...+..+.+..|+.++..+++++. +.+. ++|++||...++.
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 147 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA---------------- 147 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC----------------
Confidence 99999998543211 122334567899999999888774 3455 8999999987642
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
..+...|+.+|...+.+++.++.+ .++++.++||+.++++..... .. ......+++
T Consensus 148 ~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~-----------------~~----~~~~~~~~~ 206 (239)
T PRK12828 148 GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD-----------------MP----DADFSRWVT 206 (239)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc-----------------CC----chhhhcCCC
Confidence 223456999999999888777654 489999999999998741100 00 001123799
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
++|+++++..++.... +..+.+.++..
T Consensus 207 ~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 207 PEQIAAVIAFLLSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCEe
Confidence 9999999999998653 33566666554
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=148.75 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=141.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~~ 93 (343)
|++++|||||+|+||.+++++|+++| +.|++..+............+. ...+.++.+|+.+.. +.
T Consensus 1 ~~~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 1 MRKVMIITGASRGIGAATALLAAERG-YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999 8887765432211111111111 235778999999863 12
Q ss_pred CCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~--------~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.+|+|||++|...... ...+....++.|+.++..+++++.+. +.++|++||...+..
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------- 149 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLG---------- 149 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCC----------
Confidence 5899999998653211 12234567899999999988877543 126999999765321
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
.......|+.+|...|.+++.++.+. ++++.++||+.++++..... .....+.......++.
T Consensus 150 -----~~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~---~~~~~~~~~~~~~p~~------- 214 (248)
T PRK06123 150 -----SPGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG---GEPGRVDRVKAGIPMG------- 214 (248)
T ss_pred -----CCCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhcc---CCHHHHHHHHhcCCCC-------
Confidence 11111359999999999998887764 89999999999999853211 1112222222222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
-..+++|++++++.++.... +..|++.++
T Consensus 215 --~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 --RGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred --CCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 12467999999999987542 346777654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=152.93 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=140.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+++++||||+|+||++++++|+++| ++|+++.|+. +.+.... ..+++++.+|+.+... .++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~----~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGAARRV----DKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999999999 9999998853 2222222 2358889999998632 269
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHH----HHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGT----LNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~----~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||+||...... ...+....++.|+.++ ..++..+++.+. ++|++||...+. +
T Consensus 76 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~ 139 (273)
T PRK06182 76 DVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------------Y 139 (273)
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------------C
Confidence 99999998654221 2234566778898774 455556667766 899999975431 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCC--------ccHHHHHHHHHHcCCCeEEecCC
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDD--------GRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
......|+.+|...+.+.+.++. ..|+++.++||+.+.++...... .............. ....
T Consensus 140 ~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 214 (273)
T PRK06182 140 TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAAS-----MRST 214 (273)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHH-----HHHh
Confidence 11224699999999998776664 35899999999999887521100 00000000000000 0000
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC-CcceEecC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN-TGPVNIGN 267 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~~~ 267 (343)
.....+.+++|+|++++.+++... ...|+++.
T Consensus 215 ~~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 215 YGSGRLSDPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred hccccCCCHHHHHHHHHHHHhCCCCCceeecCc
Confidence 012346788999999999998765 34555543
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=146.37 Aligned_cols=215 Identities=15% Similarity=0.071 Sum_probs=143.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+++++||||+|+||++++++|+++| ++|+++ .|..... +.....+ ...++.++.+|+.++..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYARSRKAA-EETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHH-HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999 887764 5543221 1111111 12467889999998732
Q ss_pred -CCCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..+|+|||++|........+ +....++.|+.++..+++++.+ .+. +||++||...+.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 146 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR------------- 146 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc-------------
Confidence 25899999998643222222 2234567899988888887764 344 899999976542
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+++.+..+ .++++.+++|+.+..+........ ..+........+ ..
T Consensus 147 ---~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~ 212 (250)
T PRK08063 147 ---YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR--EELLEDARAKTP---------AG 212 (250)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc--hHHHHHHhcCCC---------CC
Confidence 2233467999999999999888754 589999999999987652211000 112211111110 11
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.+++++|+|++++.+++.+. +..+++.++..
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 36889999999999997643 34666666544
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=148.34 Aligned_cols=214 Identities=18% Similarity=0.127 Sum_probs=145.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 93 (343)
+++++|||||+|+||++++++|+++| ++|++++|+..... .+...+ ...++.++.+|+.+... .
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAE-KVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999 99999988542211 111111 12468899999987621 2
Q ss_pred CCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||++|....... .......++.|+.++..+++++. +.+. ++|++||...+..
T Consensus 80 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~-------------- 145 (250)
T TIGR03206 80 PVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG-------------- 145 (250)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC--------------
Confidence 58999999985432111 12234568899999998877774 4555 8999999887642
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|.+.+.+.+.++.+. ++++.++||+.++++....... ..-..+...+....+. .
T Consensus 146 --~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 214 (250)
T TIGR03206 146 --SSGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL---------G 214 (250)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc---------c
Confidence 1223569999999999888887664 8999999999998874211000 0001122222222111 1
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+...+|+|+++..++.... +..+.+.++
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 215 RLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 24567899999999987654 346777654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=146.74 Aligned_cols=210 Identities=19% Similarity=0.168 Sum_probs=145.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------CCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------IEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~d~v 98 (343)
+.+++++||||+|+||.++++.|.++| ++|++++|+.. .........++.++.+|+.+... ..+|+|
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG-ARVVAAARNAA----ALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 457899999999999999999999999 99999998532 12222122246778899987632 258999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
||++|...... ...+....+..|+.++..+++++.+. + .+||++||...+. +..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 145 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV----------------GLP 145 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC----------------CCC
Confidence 99998653221 12334556779999999998888643 2 3899999987653 222
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
+...|+.+|..+|.+++.++.+ .++++..+||+.++++........ .......... . ....+++++
T Consensus 146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~~--~-------~~~~~~~~~ 214 (245)
T PRK07060 146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD--PQKSGPMLAA--I-------PLGRFAEVD 214 (245)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC--HHHHHHHHhc--C-------CCCCCCCHH
Confidence 3457999999999999888765 379999999999998753211000 0011111111 1 123479999
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|+++++..+++.+. .| .+++.++
T Consensus 215 d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 215 DVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred HHHHHHHHHcCcccCCccCcEEeECCC
Confidence 99999999998654 34 5565554
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=152.42 Aligned_cols=215 Identities=17% Similarity=0.123 Sum_probs=149.9
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------ 91 (343)
.+++|++|||||+|+||.+++++|+++| ++|+++.|......+.....+. ..++.++.+|+.+..
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 9999998854322222222222 235778999998763
Q ss_pred cCCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..++|+|||+||...... ...+....++.|+.++..+++++.+. +.++|++||...|..
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~------------- 188 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG------------- 188 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC-------------
Confidence 136899999998643211 12234567899999999999998753 338999999887742
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
......|+.+|...+.+++.++.+. |+++..++|+.++++..... .....+...... .....
T Consensus 189 ---~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~---~~~~~~~~~~~~---------~~~~~ 253 (290)
T PRK06701 189 ---NETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD---FDEEKVSQFGSN---------TPMQR 253 (290)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc---cCHHHHHHHHhc---------CCcCC
Confidence 1122469999999999999988764 89999999999988753211 111112211111 11234
Q ss_pred eeehHHHHHHHHHHHhcCC---C-cceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---T-GPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~-~~~~~~~~~ 269 (343)
+.+++|+|++++.++.... . ..+++.++.
T Consensus 254 ~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 254 PGQPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred CcCHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 7889999999999998653 3 356666553
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=148.40 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=140.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
+++||||||+|+||.++++.|+++| ++|++++|+..........+. ...++.++.+|+.+.. ..++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999 999999985322111111111 1236788999998863 2368
Q ss_pred CEEEEecCCCCcccccc-----ChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKY-----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~-----~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+||||+|......... .....++.|+.++..+++.+.. .+.++|++||...+. +
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 143 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT----------------G 143 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC----------------C
Confidence 99999998654322222 2345689999999999998853 233899999987763 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
..+...|+.+|...|.+.+.+..+ .++++.+++|+.+..+.... .+. ..+.. ....+.....+++
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~--------~~~--~~~~~--~~~~~~~~~~~~~ 211 (263)
T PRK06181 144 VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR--------ALD--GDGKP--LGKSPMQESKIMS 211 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh--------hcc--ccccc--cccccccccCCCC
Confidence 233467999999999988877643 48999999999887764210 000 00111 1111222236899
Q ss_pred hHHHHHHHHHHHhcCC
Q 019309 244 VSDMVDGLIRLMEGEN 259 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~ 259 (343)
++|+|++++.+++...
T Consensus 212 ~~dva~~i~~~~~~~~ 227 (263)
T PRK06181 212 AEECAEAILPAIARRK 227 (263)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998643
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=149.81 Aligned_cols=210 Identities=17% Similarity=0.119 Sum_probs=141.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+++|+||||+|+||++++++|.++| ++|++++|+..... ...+++++.+|+.|+. ...
T Consensus 2 ~~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 2 SNSKVALVTGASSGIGRATAEKLARAG-YRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 356789999999999999999999999 99999998532211 1246889999999873 235
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+||||||...... ...+....++.|+.++..++.++ ++.+. ++|++||...+.
T Consensus 74 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 137 (270)
T PRK06179 74 IDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL---------------- 137 (270)
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC----------------
Confidence 899999998654322 22344677889998888888774 55666 999999986653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC--ccHHHH--HHHHHHcCCCeEEecCCcee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD--GRVVSN--FIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...|.+.+.+..+ .|+++++++|+.+.++...... ...+.. ......... +. . ..
T Consensus 138 ~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~--~~ 211 (270)
T PRK06179 138 PAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKA-VA---K--AV 211 (270)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHH-HH---h--cc
Confidence 2222356999999999988887654 5899999999999887532110 000000 000000000 00 0 01
Q ss_pred EeeeehHHHHHHHHHHHhcCCCcceEec
Q 019309 239 RSFCYVSDMVDGLIRLMEGENTGPVNIG 266 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~~~~~~~~ 266 (343)
.....++|+|+.++.++..+..+..+..
T Consensus 212 ~~~~~~~~va~~~~~~~~~~~~~~~~~~ 239 (270)
T PRK06179 212 KKADAPEVVADTVVKAALGPWPKMRYTA 239 (270)
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCeeEec
Confidence 1245678999999999987664433333
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=146.58 Aligned_cols=203 Identities=17% Similarity=0.145 Sum_probs=139.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++++|+||||+|+||++++++|.++| ++|++++|+..... .....+ ..++.++.+|+.+.. ..++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG-ARVAITGRDPASLE-AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCHHHHH-HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 99999988532111 111111 235778899998752 2368
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH---cCCeEEEEeCCc-ccCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSE-VYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~---~~~r~i~~SS~~-v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|+|||++|...... ...++...++.|+.++..+++++.. .+.++|++||.. .|+ .
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~-----------------~ 144 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG-----------------M 144 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC-----------------C
Confidence 99999998654221 2245567889999999999999974 334778777754 333 1
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
.....|+.+|...|.+++.++.+. |+++.++||+.++++..... .......+........++. -+.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 215 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG---------RFG 215 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC---------CCc
Confidence 123579999999999998887653 89999999999998742110 0111222333333222211 135
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
.++|+++++..++....
T Consensus 216 ~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 216 TPEEIAKAVLYLASDES 232 (249)
T ss_pred CHHHHHHHHHHHcCccc
Confidence 78999999999987543
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=147.83 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=140.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|+|+||||+|+||.++++.|+++| ++|+++.|..+...+....+ .....+.++.+|+.|+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999 99999988543222111111 122356677999998632
Q ss_pred -CCCCEEEEecCCCCcc-------ccccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~-------~~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
..+|+|||||+..... .........++.|+.++..++. .+++.+. ++|++||.+.+...... ..++
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~~~ 159 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE-IYEG 159 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch-hccc
Confidence 2389999999743211 1112334566778766665544 4445565 89999997665332111 1122
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+......|+.+|...|.+.+.++.+ .++++.+++|+.++++. .. .+........
T Consensus 160 -----~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~----~~----~~~~~~~~~~--------- 217 (256)
T PRK09186 160 -----TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ----PE----AFLNAYKKCC--------- 217 (256)
T ss_pred -----cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCC----CH----HHHHHHHhcC---------
Confidence 12222346999999999998877765 47999999999887643 11 1112111110
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
....+++++|+|++++.++.... .| .+.+.++
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred CccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 11247899999999999997543 35 4444443
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=147.00 Aligned_cols=216 Identities=16% Similarity=0.090 Sum_probs=146.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+.++++|||||+|+||.++++.|+++| ++|++++|.............. ..++.++.+|+.|+.. .
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999999 8999998853221111111111 2357789999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|+|||++|...... ........++.|+.++..+++++... +. +||++||...+.....
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~---------- 158 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP---------- 158 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc----------
Confidence 5899999998543211 12233466789999999999987654 45 8999999766532110
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
...+...|+.+|...|.+++.+++++ ++++.+++|+.+-++.. ...+..+.+....+.++. .
T Consensus 159 --~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~----~~~~~~~~~~~~~~~~~~---------~ 223 (259)
T PRK08213 159 --EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMT----RGTLERLGEDLLAHTPLG---------R 223 (259)
T ss_pred --cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcch----hhhhHHHHHHHHhcCCCC---------C
Confidence 11234679999999999999987754 68999999988866531 123334444433333222 1
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+...+|+++++..++.... .| .+++.++
T Consensus 224 ~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 224 LGDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred CcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 3457999999998886543 34 4555543
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=143.92 Aligned_cols=211 Identities=16% Similarity=0.130 Sum_probs=142.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+|+||||+|+||+++++.|+++| ++|+++.|............+ ....+.++.+|+.+...
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQG-ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999 999888875432222222211 12467889999988631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcc-cCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v-~~~~~~~~~~e~~~~ 162 (343)
.++|+|||++|...... ........+..|+.++..+++++.. .+. +||++||... ++.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------------ 149 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------------ 149 (248)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC------------
Confidence 36899999998654321 1123445678899999888888864 344 7999999643 321
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
.....|+.+|...|.+++.++.+ .++++.+++|+.+.++.... .............. ..
T Consensus 150 -----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~----~~~~~~~~~~~~~~---------~~ 211 (248)
T PRK05557 150 -----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA----LPEDVKEAILAQIP---------LG 211 (248)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc----cChHHHHHHHhcCC---------CC
Confidence 12356999999999888776653 47999999999886653211 11222222222211 11
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+.+++|+++++..++.... +..+++.++
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 212 RLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 25788999999998886522 347788765
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=145.16 Aligned_cols=211 Identities=15% Similarity=0.073 Sum_probs=144.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++|+|+||||+|+||+++++.|.++| ++|++++|...... .....+ ...+.++.+|+.+... ..
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRERGS-KVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHHHHH-HHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999 99999987432211 111112 2357889999998631 25
Q ss_pred CCEEEEecCCCCccc------cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ...++...++.|+.++..+++++.+ .+.++|++||...+..
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~-------------- 150 (255)
T PRK05717 85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS-------------- 150 (255)
T ss_pred CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC--------------
Confidence 899999998653211 2234457889999999999999963 2348999999866421
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
......|+.+|...|.+++.++.+. ++++..++|+.+.++..... ....+. ...... .+ ...+.
T Consensus 151 --~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~---~~~~~~-~~~~~~-~~-------~~~~~ 216 (255)
T PRK05717 151 --EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR---RAEPLS-EADHAQ-HP-------AGRVG 216 (255)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc---cchHHH-HHHhhc-CC-------CCCCc
Confidence 1123569999999999999998875 48999999999988752111 001111 111111 11 11367
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+++|++.++..++.... .| .+.+.++
T Consensus 217 ~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 217 TVEDVAAMVAWLLSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred CHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 88999999998886543 23 4555443
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=146.43 Aligned_cols=208 Identities=17% Similarity=0.106 Sum_probs=144.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+|++|||||+|+||++++++|+++| ++|+++.|.. ... ....+.++.+|+.+.. ...
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAF------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAETGP 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecch------hhh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999 9999998853 111 1246888999998763 124
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||++|...... ...++...++.|+.++..+++++. +.+. +||++||.....
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~---------------- 140 (252)
T PRK08220 77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV---------------- 140 (252)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------------
Confidence 899999998654321 233556778999999999988874 2343 899999976532
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC------ccHHHHHHHHHHcCCCeEEecCCc
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD------GRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...|.+++.+..+ .++++.+++|+.++++...... .............+ .
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 211 (252)
T PRK08220 141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG---------I 211 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc---------C
Confidence 3334467999999999999888765 6899999999999987521100 00000011111111 1
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
....+++++|+|++++.++.... +....+.++
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 212 PLGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred CCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 12357899999999999997543 334455544
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=144.99 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=145.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~ 93 (343)
++|++|||||+|+||.++++.|.++| ++|+++.+......+.+...+ ....+.++.+|+.|.. ..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999 898887664222211121111 1245788999998763 13
Q ss_pred CCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+||||||..... ....+....++.|+.++..+++++... +. ++|+++|...+.
T Consensus 87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~--------------- 151 (258)
T PRK09134 87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN--------------- 151 (258)
T ss_pred CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC---------------
Confidence 589999999865321 122345677899999999999887653 22 788888765442
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...|.+.+.++.+. ++++..++||.+...... ....+ ........ .+ ...
T Consensus 152 -~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~-~~~~~~~~---~~------~~~ 215 (258)
T PRK09134 152 -LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDF-ARQHAATP---LG------RGS 215 (258)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHH-HHHHhcCC---CC------CCc
Confidence 11122469999999999999988764 389999999988764311 01111 12222111 11 247
Q ss_pred ehHHHHHHHHHHHhcCC-C-cceEecCCCccCHH
Q 019309 243 YVSDMVDGLIRLMEGEN-T-GPVNIGNPGEFTML 274 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~-~-~~~~~~~~~~~s~~ 274 (343)
+++|+|++++.+++++. . ..+++.++..+++.
T Consensus 216 ~~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 216 TPEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred CHHHHHHHHHHHhcCCCcCCCEEEECCCeecccc
Confidence 78999999999998765 3 46777776655543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=145.92 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=119.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~ 93 (343)
.++++|+||||+|+||.++++.|.++| ++|++++|+.. .+..+. ..+++++.+|+.|... .
T Consensus 2 ~~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r~~~----~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 2 DMKRSILITGCSSGIGAYCARALQSDG-WRVFATCRKEE----DVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHH----HHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 99999998532 222221 2367889999998621 2
Q ss_pred CCCEEEEecCCCCccccc----cChHHHHHHHHHH----HHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~----~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||........ ++....++.|+.+ +..++..+++.+. ++|++||...+.
T Consensus 76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~--------------- 140 (277)
T PRK05993 76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV--------------- 140 (277)
T ss_pred CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC---------------
Confidence 589999999865432221 2334578899888 6667777777776 999999976542
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~ 207 (343)
+..+...|+.+|...|.+.+.+.. ..|+++.+++||.+-.+.
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 141 -PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred -CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 333446799999999999887764 458999999999887653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=144.50 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=134.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------CCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------IEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~d~vi 99 (343)
++|++|||||+|+||+++++.|+++ ++|++++|+.... +.+... ...++++.+|+.|... .++|+||
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 76 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERL-DELAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLV 76 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHH-HHHHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence 4579999999999999999999988 8899999853221 111111 2368889999998632 2599999
Q ss_pred EecCCCCccc----cccChHHHHHHHHHH----HHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 100 ~~a~~~~~~~----~~~~~~~~~~~nv~~----~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
|++|...... ...+....+..|+.+ +..+++++++.+.++|++||...++. ..+..
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------~~~~~ 140 (227)
T PRK08219 77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRA----------------NPGWG 140 (227)
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCc----------------CCCCc
Confidence 9998643221 112334456777777 55555556666669999999877642 22345
Q ss_pred chHHhHHHHHHHHHHHHHHh-C-CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQH-G-IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~-~-~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.|+.+|...|.+++.+..+. + +++..++|+.+.++.. ..+... .+.. .....+++++|+++
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~--------~~~~~~--~~~~-------~~~~~~~~~~dva~ 203 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ--------RGLVAQ--EGGE-------YDPERYLRPETVAK 203 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh--------hhhhhh--hccc-------cCCCCCCCHHHHHH
Confidence 79999999999888776542 4 7888888876654421 111110 0110 11235799999999
Q ss_pred HHHHHHhcCCC-cceEec
Q 019309 250 GLIRLMEGENT-GPVNIG 266 (343)
Q Consensus 250 ~i~~~~~~~~~-~~~~~~ 266 (343)
+++.+++.+.. .++++.
T Consensus 204 ~~~~~l~~~~~~~~~~~~ 221 (227)
T PRK08219 204 AVRFAVDAPPDAHITEVV 221 (227)
T ss_pred HHHHHHcCCCCCccceEE
Confidence 99999998763 455554
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=145.68 Aligned_cols=213 Identities=16% Similarity=0.088 Sum_probs=145.5
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~ 93 (343)
...+++||||||+|+||.++++.|.++| ++|+++.|.... ...........+.++.+|+.++. ..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDV--AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3468999999999999999999999999 999999985421 11112222345678999998763 13
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||++|...... ...+....+..|+.++..++.++.. .+. +||++||.....
T Consensus 89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 153 (255)
T PRK06841 89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV--------------- 153 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc---------------
Confidence 6899999998653221 1223456788999999999988764 344 899999976432
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+.+.++.+ .|+++..++|+.+..+..... +........... ++ ...+
T Consensus 154 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~--~~-------~~~~ 220 (255)
T PRK06841 154 -ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKA---WAGEKGERAKKL--IP-------AGRF 220 (255)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccc---cchhHHHHHHhc--CC-------CCCC
Confidence 1122356999999999988888765 479999999999887642110 000111111111 11 1236
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
.+++|++++++.++.... .| .+.+.++.
T Consensus 221 ~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 789999999999997653 34 55665543
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=142.61 Aligned_cols=212 Identities=17% Similarity=0.159 Sum_probs=142.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++|+++||||+|+||+++++.|++.| ++|++..+......+.+..... .++.++.+|+.++.. ..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREG-ARVVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGK 80 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999999 8888765532221122222222 468889999987631 13
Q ss_pred -CCEEEEecCCCCc----------cccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCC
Q 019309 95 -VDQIYHLACPASP----------IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 95 -~d~vi~~a~~~~~----------~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
+|++||+||.... .....+....++.|+.++..+++++. +.+. ++|++||....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------- 150 (253)
T PRK08642 81 PITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ---------- 150 (253)
T ss_pred CCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc----------
Confidence 8999999975311 01123345678999999999998885 3444 89999986432
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+..+...|+.+|...|.+++.++.+. |+++..++||++..+..... ........... ..++
T Consensus 151 ------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~---~~~~~~~~~~~--~~~~---- 215 (253)
T PRK08642 151 ------NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAA---TPDEVFDLIAA--TTPL---- 215 (253)
T ss_pred ------CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhcc---CCHHHHHHHHh--cCCc----
Confidence 233445679999999999999998763 68999999998876531110 01112222211 1111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+.+++|+++++..++.... .| .+.+.++
T Consensus 216 ---~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 216 ---RKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred ---CCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 237889999999999997543 33 5555554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=141.37 Aligned_cols=212 Identities=18% Similarity=0.131 Sum_probs=144.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 94 (343)
.+|+++||||+|+||.++++.|+++| ++|++++|.............. ..++.++.+|+.+... .+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999 9999998753322211111111 2368889999998632 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||++|...... ...+....+..|+.++..+++++.+ .+. +||++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 148 (250)
T PRK12939 85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW---------------- 148 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc----------------
Confidence 999999998654321 1223345678999999888887753 334 899999976542
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...|.+++.++.+ .++++..++|+.+.++....... ..+........ ....++
T Consensus 149 ~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~~~---------~~~~~~ 216 (250)
T PRK12939 149 GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA---DERHAYYLKGR---------ALERLQ 216 (250)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC---hHHHHHHHhcC---------CCCCCC
Confidence 2222356999999999999887754 47999999999887764221111 01222222211 123478
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
+++|+|++++.++.... +..+.+.++
T Consensus 217 ~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 217 VPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred CHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 89999999999997643 345666654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=142.86 Aligned_cols=209 Identities=13% Similarity=0.052 Sum_probs=144.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+++++|+||||+|+||.+++++|+++| ++|++++|... ......+. ...+.++.+|+++...
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEP---SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchH---HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 99999988431 11111111 2358889999997632
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cC-C-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||++|....... ..+....++.|+.++..+++++.+ .+ . ++|++||...+..
T Consensus 79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 146 (248)
T TIGR01832 79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG------------ 146 (248)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC------------
Confidence 359999999986543221 234456688999999998888753 33 3 8999999877642
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|...+.+++.++.+. |+++..++||.+..+........ ......... ..+ ..
T Consensus 147 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~--~~~-------~~ 211 (248)
T TIGR01832 147 ----GIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD--EDRNAAILE--RIP-------AG 211 (248)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC--hHHHHHHHh--cCC-------CC
Confidence 1123469999999999999988774 79999999999987642110000 001111111 111 13
Q ss_pred eeeehHHHHHHHHHHHhcCC---CcceEec
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TGPVNIG 266 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~~~~~~ 266 (343)
.++.++|+|++++.++.... .|.+...
T Consensus 212 ~~~~~~dva~~~~~l~s~~~~~~~G~~i~~ 241 (248)
T TIGR01832 212 RWGTPDDIGGPAVFLASSASDYVNGYTLAV 241 (248)
T ss_pred CCcCHHHHHHHHHHHcCccccCcCCcEEEe
Confidence 57889999999999997543 4544443
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=144.05 Aligned_cols=219 Identities=14% Similarity=0.089 Sum_probs=140.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cC--CCceEEEEcccCCcc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IG--HPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~~~d~~~~~---------- 91 (343)
+++|+++||||+|+||.++++.|+++| ++|+++.+......+..... +. ..++.++.+|+.++.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 357899999999999999999999999 88777765432222222111 11 236788999998762
Q ss_pred --cCCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..++|++||+||..... ....+....++.|+.++..++.++... +.++++++|..+..
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~------------- 151 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA------------- 151 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc-------------
Confidence 23689999999864321 122345567889999999999988653 23666653332211
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|.+.|.+++.++.+. ++++..++||.+.++...+... ..... ....... ..+....
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~---~~~~~~~-~~~~~~~ 221 (257)
T PRK12744 152 ---FTPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG---AEAVA---YHKTAAA-LSPFSKT 221 (257)
T ss_pred ---cCCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc---cchhh---ccccccc-ccccccC
Confidence 11123569999999999999998775 6999999999987764211100 00000 0000000 0111112
Q ss_pred eeeehHHHHHHHHHHHhcCC---CcceEecCCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TGPVNIGNPG 269 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~ 269 (343)
.+.+++|+++++..+++... +..+++.++.
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg~ 254 (257)
T PRK12744 222 GLTDIEDIVPFIRFLVTDGWWITGQTILINGGY 254 (257)
T ss_pred CCCCHHHHHHHHHHhhcccceeecceEeecCCc
Confidence 47889999999999998532 3467776654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-18 Score=144.62 Aligned_cols=190 Identities=10% Similarity=0.045 Sum_probs=134.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 95 (343)
+|+|+||||+|+||.++++.|.++| ++|++++|+..... .....+. ..++.++.+|++++.. ..+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQ-AFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999 99999998532211 1111111 1268899999998632 248
Q ss_pred CEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||++|...... ...+....++.|+.++..+++ ++++.+. ++|++||...+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~---------------- 143 (257)
T PRK07024 80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR---------------- 143 (257)
T ss_pred CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------------
Confidence 99999998653211 123456778999999988776 4555555 899999976542
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.+.. ..|++++++||+.+.++.... .. . ..+ ..+
T Consensus 144 ~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~---------------~~-~---~~~----~~~ 200 (257)
T PRK07024 144 GLPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH---------------NP-Y---PMP----FLM 200 (257)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc---------------CC-C---CCC----Ccc
Confidence 122235699999999999888764 358999999999998764110 00 0 000 135
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
..+++++.++.++++..
T Consensus 201 ~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 201 DADRFAARAARAIARGR 217 (257)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 78999999999998643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=147.67 Aligned_cols=222 Identities=15% Similarity=0.128 Sum_probs=146.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.++++++|||||+|.||.++++.|+++| ++|++++|..... +...... ...++.++.+|+.++..
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999 9999998864332 1111111 12468889999987631
Q ss_pred CCCCEEEEecCCCCccccc---cChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~---~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|+|||++|........ ++....++.|+.++..+..++.+ .+.+||++||...+.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 145 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT---------------- 145 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------------
Confidence 2589999999854321111 34456778899988888887653 223899999977652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++.+ .++++..++|+.++++....... ............. ++. ...
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~ 217 (258)
T PRK08628 146 GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK--IPL------GHR 217 (258)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc--CCc------ccc
Confidence 2223457999999999999988764 47999999999999874210000 0000011111111 111 013
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCCCccCHH
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGEFTML 274 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~s~~ 274 (343)
++.++|+|++++.++.... .| .+.+.++ ...++
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg-~~~~~ 254 (258)
T PRK08628 218 MTTAEEIADTAVFLLSERSSHTTGQWLFVDGG-YVHLD 254 (258)
T ss_pred CCCHHHHHHHHHHHhChhhccccCceEEecCC-ccccc
Confidence 6788999999999997653 44 4555443 34333
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=143.79 Aligned_cols=214 Identities=17% Similarity=0.116 Sum_probs=146.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC-CccchhhhcC--CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG-SKDNLKKWIG--HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~d~~~~~------------ 91 (343)
+.+++++||||+|+||.++++.|+++| ++|+++.|.... ..+.+..... ..++.++.+|+.+..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999 999887764221 1122222211 235778899999863
Q ss_pred cCCCCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..++|++||+||.... .....+....++.|+.++..+++++... +.++|++||...+..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~------------- 192 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP------------- 192 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC-------------
Confidence 2358999999985321 1123455678899999999999988653 348999999887632
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
......|+.+|...+.+++.++.+ .|+++..++|+++.++....... ........... .++ ..
T Consensus 193 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~--~~~~~~~~~~~--~~~-------~r 258 (294)
T PRK07985 193 ---SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDKIPQFGQQ--TPM-------KR 258 (294)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC--CHHHHHHHhcc--CCC-------CC
Confidence 222356999999999999888876 48999999999999985321100 01111111111 111 12
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
+..++|+|++++.++.... +..+.+.++
T Consensus 259 ~~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 259 AGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred CCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 5678999999999997644 335566554
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=140.38 Aligned_cols=211 Identities=14% Similarity=0.088 Sum_probs=144.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+|+||||||+|.||+++++.|.++| ++|++++|..... ...++.++.+|+.+.. ..+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAG-ARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCC-CEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999999 9999999853211 1235788999998863 236
Q ss_pred CCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|+|||+||..... ....+....++.|+.++..+.+++ ++.+. ++|++||...+..
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------- 144 (260)
T PRK06523 78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP------------- 144 (260)
T ss_pred CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-------------
Confidence 89999999853211 123345667889999887776554 44554 8999999865421
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHH-----------HHHHHHHcC-CC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVS-----------NFIAQALRG-EP 228 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~-----------~~~~~~~~~-~~ 228 (343)
...+...|+.+|...+.+++.++.+ .|+++.+++|+.+.++... .... .....+... ..
T Consensus 145 --~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T PRK06523 145 --LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAV----ALAERLAEAAGTDYEGAKQIIMDSLGG 218 (260)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHH----HHHHHHHhhcCCCHHHHHHHHHHHhcc
Confidence 1123467999999999998888765 3799999999999887521 1111 011111100 01
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
++ ...+..++|+++++..++.... +..+.+.++...|
T Consensus 219 ~p-------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 219 IP-------LGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred Cc-------cCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 11 1124578999999999997543 4467777765543
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-17 Score=139.03 Aligned_cols=158 Identities=19% Similarity=0.115 Sum_probs=119.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------CCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------IEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~d~ 97 (343)
+.+++|+||||+|+||+++++.|+++| + +|+++.|...... . ...++.++.+|+.+... ..+|+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G-~~~V~~~~r~~~~~~----~--~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARG-AAKVYAAARDPESVT----D--LGPRVVPLQLDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-cccEEEEecChhhhh----h--cCCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 356899999999999999999999999 7 9999998542211 1 22468899999988632 25899
Q ss_pred EEEecCC-CCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACP-ASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~-~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|||++|. .... ....+....+..|+.++..+++++. +.+. +||++||...+. +.
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~----------------~~ 140 (238)
T PRK08264 77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV----------------NF 140 (238)
T ss_pred EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc----------------CC
Confidence 9999987 2211 1223445667899999999988865 3444 799999987653 22
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCC
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPR 207 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~ 207 (343)
.+...|+.+|...|.+.+.++.+. ++++.++||+.+.++.
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 334679999999999888877653 8999999999887653
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=139.56 Aligned_cols=212 Identities=16% Similarity=0.074 Sum_probs=143.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.++++||||+|+||+++++.|.++| ++|+++.|............. ...++.++.+|+.+.. ...
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999 999999886321111111111 1235889999999863 235
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||++|..... ....+....++.|+.++..+.. .+++.+. +||++||...+.
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~---------------- 144 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK---------------- 144 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc----------------
Confidence 99999999865321 1223445677899999888754 4455555 999999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|.+.+.+++.++.+ .++++.+++|+.+.++...... ...........+ ...+.
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~----~~~~~~~~~~~~---------~~~~~ 211 (245)
T PRK12824 145 GQFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG----PEVLQSIVNQIP---------MKRLG 211 (245)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC----HHHHHHHHhcCC---------CCCCC
Confidence 1223356999999999888887653 4799999999999887532111 122222222211 11245
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.++|+++++..++.... ++.+++.++..
T Consensus 212 ~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 212 TPEEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred CHHHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 67999999998886533 45777777643
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=140.75 Aligned_cols=212 Identities=21% Similarity=0.153 Sum_probs=142.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~ 92 (343)
.++++|+||||+|+||+++++.|.++| ++|+++.|........+...+ ...++.++.+|+.+.. .
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADG-FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999 888887764322111111111 1246888999998763 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc--C-CeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~--~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|+|||+||...... ...+....++.|+.++..+++++.+. . .++|++||...+.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 145 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL---------------- 145 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------
Confidence 36999999998653211 22344567789999999999888653 2 3899999876542
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+++.++.+ .++++.+++|+.+-++..... .....+.......+. ..+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~~~~---------~~~~ 213 (245)
T PRK12937 146 PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG---KSAEQIDQLAGLAPL---------ERLG 213 (245)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc---CCHHHHHHHHhcCCC---------CCCC
Confidence 2334467999999999999887755 378999999998876542110 011222222222211 1245
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGN 267 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~ 267 (343)
+++|+++++..++.... .| .+++.+
T Consensus 214 ~~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 242 (245)
T PRK12937 214 TPEEIAAAVAFLAGPDGAWVNGQVLRVNG 242 (245)
T ss_pred CHHHHHHHHHHHcCccccCccccEEEeCC
Confidence 77999999999997543 33 555543
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=140.35 Aligned_cols=211 Identities=16% Similarity=0.106 Sum_probs=142.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 93 (343)
|+++|+||||+|+||.++++.|+++| ++|+++.+......+.....+ ...++.++.+|+.++.. .
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999 999888653222222221111 12368889999998632 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~--~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|+|||++|...... ..++....+..|+.++..+++++... + .++|++||....
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~--------------- 144 (256)
T PRK12743 80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH--------------- 144 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc---------------
Confidence 5899999998654221 22345567899999999999877542 2 389999997532
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.+..+...|+.+|...+.+++.++.+ .++++..++|+.+.++...... .......... .++ ..
T Consensus 145 -~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~----~~~~~~~~~~--~~~-------~~ 210 (256)
T PRK12743 145 -TPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD----SDVKPDSRPG--IPL-------GR 210 (256)
T ss_pred -CCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC----hHHHHHHHhc--CCC-------CC
Confidence 23344567999999999998887764 4799999999999987522110 1111111111 111 12
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+.+++|+++++..++.... .| .+.+.++
T Consensus 211 ~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg 242 (256)
T PRK12743 211 PGDTHEIASLVAWLCSEGASYTTGQSLIVDGG 242 (256)
T ss_pred CCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 4578999999999987543 45 4455554
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=141.96 Aligned_cols=198 Identities=13% Similarity=0.066 Sum_probs=134.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~d~ 97 (343)
|+|+||||+|+||.++++.|+++| ++|++++|+.... +.+...+ ..++.++.+|+.+... .++|.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERL-QELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 789999999999999999999999 9999999853221 1121212 2368889999987621 36999
Q ss_pred EEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|||++|.... .....+....++.|+.++..++..+ ++.+. ++|++||...+. +.
T Consensus 78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 141 (248)
T PRK10538 78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY 141 (248)
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC----------------CC
Confidence 9999985421 1123344567889988865555554 55665 899999976541 22
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
.+...|+.+|...|.+.+.++.+. ++++.+++||.+.|+..... .... ....... + . ...++.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~~~~~~~--------~-~---~~~~~~ 208 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKAEKT--------Y-Q---NTVALT 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-HHHHHhh--------c-c---ccCCCC
Confidence 334679999999999998887654 69999999999987642100 0000 0000000 0 0 113468
Q ss_pred hHHHHHHHHHHHhcCC
Q 019309 244 VSDMVDGLIRLMEGEN 259 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~ 259 (343)
++|+|++++.++..+.
T Consensus 209 ~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 209 PEDVSEAVWWVATLPA 224 (248)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8999999999997543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=139.61 Aligned_cols=213 Identities=16% Similarity=0.063 Sum_probs=140.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+++||||+|.||.++++.|.++| ++|+++.+.... ..... ...++.++.+|+.++.. .+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~---~~~~l-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREG-AKVAVLYNSAEN---EAKEL-REKGVFTIKCDVGNRDQVKKSKEVVEKEFGR 79 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcHH---HHHHH-HhCCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 457999999999999999999999999 999887663221 11111 12257889999998732 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHH----HHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l----~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+||||+|...... ...+....++.|+.++..+ +..+++.+. ++|++||...++.
T Consensus 80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~--------------- 144 (255)
T PRK06463 80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT--------------- 144 (255)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------------
Confidence 899999998643211 2234456788999996555 444444444 8999999877641
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|.+.+.+++.++.+ .++++..++|+++-.+..... .......+........+ ...+
T Consensus 145 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 215 (255)
T PRK06463 145 AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV---------LKTT 215 (255)
T ss_pred CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC---------cCCC
Confidence 1222356999999999999988865 479999999998865532110 00001111111111111 1225
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..++|++++++.++.... .| .+.+.++
T Consensus 216 ~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 246 (255)
T PRK06463 216 GKPEDIANIVLFLASDDARYITGQVIVADGG 246 (255)
T ss_pred cCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 678999999999997543 34 5555554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=160.89 Aligned_cols=224 Identities=17% Similarity=0.124 Sum_probs=151.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+++||||||+|+||.++++.|.++| ++|++++|+...............++.++.+|+++.. ..+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 8999999854222111111111136888999998763 236
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ........++.|+.++..+++++. +.+ .+||++||...+.
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~--------------- 563 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN--------------- 563 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC---------------
Confidence 999999998654322 223445678899999999977664 433 4899999987652
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEecccc-CCCCCCCCccHHHHHHHHHHcCCCeE----EecCCc
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTY-GPRMNIDDGRVVSNFIAQALRGEPLT----VQKPGT 236 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 236 (343)
+......|+.+|...+.+++.++.+. |+++.+++|+.+| ++..... .+.. ......+.... .+..+.
T Consensus 564 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~--~~~~--~~~~~~g~~~~~~~~~~~~~~ 638 (681)
T PRK08324 564 -PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG--EWIE--ARAAAYGLSEEELEEFYRARN 638 (681)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc--hhhh--hhhhhccCChHHHHHHHHhcC
Confidence 22234679999999999999988664 5999999999998 5542111 1100 01111111100 122333
Q ss_pred eeEeeeehHHHHHHHHHHHhc--CC--CcceEecCCCcc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEG--EN--TGPVNIGNPGEF 271 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~--~~--~~~~~~~~~~~~ 271 (343)
....+++++|+|++++.++.. .. +..+++.++...
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNAA 677 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCchh
Confidence 455789999999999999842 22 447888877543
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=139.50 Aligned_cols=201 Identities=16% Similarity=0.131 Sum_probs=131.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++++||||+|+||.++++.|+++| ++|+++ .|......+....... ..++.++.+|+.|+. ...+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEG-YTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999 888775 4432111111111111 235788999999873 2358
Q ss_pred CEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 96 d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~--------~~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
|+|||++|...... ...+....++.|+.++..+++++... +.+||++||...+...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 99999998642211 11233467889999988777665432 2369999998654210
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+ .....|+.+|...|.+++.++.+ .+++++++||+.+++|...... ............+..
T Consensus 150 ---~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~---~~~~~~~~~~~~~~~--------- 213 (247)
T PRK09730 150 ---P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG---EPGRVDRVKSNIPMQ--------- 213 (247)
T ss_pred ---C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC---CHHHHHHHHhcCCCC---------
Confidence 1 11235999999999888877654 4899999999999998632111 111222222222111
Q ss_pred eeeehHHHHHHHHHHHhcC
Q 019309 240 SFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~ 258 (343)
...+++|++++++.++...
T Consensus 214 ~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 214 RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred CCcCHHHHHHHHHhhcChh
Confidence 1236899999999999764
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=139.05 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=139.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++++|+||||+|+||++++++|++.| ++|++++|+..........+....++.++.+|+.+... .+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 89999998532211111222112468889999987631 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH---cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~---~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|+|||++|...... ...+....+..|+.++..+++++.+ .+. ++|++||...+. +
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------F 146 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------C
Confidence 999999998654221 1223446688899999888887754 233 799999976542 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+.+.+..+ .|++++++||+.+.++..... .. . .....+.
T Consensus 147 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~----------------~~----~--~~~~~~~ 204 (237)
T PRK07326 147 FAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT----------------PS----E--KDAWKIQ 204 (237)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc----------------cc----h--hhhccCC
Confidence 223456999999999888877543 489999999998877542110 00 0 0001367
Q ss_pred hHHHHHHHHHHHhcCC---CcceEecCC
Q 019309 244 VSDMVDGLIRLMEGEN---TGPVNIGNP 268 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~~~~~~~~ 268 (343)
.+|+++.++.++..+. .+...+..+
T Consensus 205 ~~d~a~~~~~~l~~~~~~~~~~~~~~~~ 232 (237)
T PRK07326 205 PEDIAQLVLDLLKMPPRTLPSKIEVRPS 232 (237)
T ss_pred HHHHHHHHHHHHhCCccccccceEEecC
Confidence 8999999999998766 334444433
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=141.48 Aligned_cols=192 Identities=15% Similarity=0.070 Sum_probs=135.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++++|+||||||.||+++++.|.++| +.|++++|+..... .....+ ..+.++.+|+.++.. .+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~-~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALG-ARVAIGDLDEALAK-ETAAEL--GLVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHh--ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999 99999988432211 111111 257889999998632 36
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||....... ..+....++.|+.++..++.++ .+.+. ++|++||...+.
T Consensus 79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 142 (273)
T PRK07825 79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI---------------- 142 (273)
T ss_pred CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------------
Confidence 8999999986543221 1233456789998888876665 45555 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.+..+ .|+++++++|+.+-++... +. .......++
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~----------------~~------~~~~~~~~~ 200 (273)
T PRK07825 143 PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA----------------GT------GGAKGFKNV 200 (273)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc----------------cc------ccccCCCCC
Confidence 2233467999999888877766544 4899999999887554210 00 001122468
Q ss_pred ehHHHHHHHHHHHhcCCC
Q 019309 243 YVSDMVDGLIRLMEGENT 260 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~~ 260 (343)
+++|+|+.++.++.++..
T Consensus 201 ~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 201 EPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 999999999999987653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-17 Score=138.42 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=146.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+.+++|+||||+|+||.++++.|.++| ++|++++|...... .....+. ..++.++.+|+.+...
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 99998887532211 1111111 2357788999997632
Q ss_pred CCCCEEEEecCCCCcccc---ccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~---~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||++|....... ..+....++.|+.++..+++++. +.+. ++|++||....
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------------- 150 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE---------------- 150 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc----------------
Confidence 358999999986543222 23444568999999999999885 3344 89999997643
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..+...|+.+|...+.+++.++.+ .++++.++.|+.+..+.... ...........+.. + ...+
T Consensus 151 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~---~~~~~~~~~~~~~~--~-------~~~~ 218 (255)
T PRK06113 151 NKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS---VITPEIEQKMLQHT--P-------IRRL 218 (255)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc---ccCHHHHHHHHhcC--C-------CCCC
Confidence 12333457999999999999888754 47899999999887654211 11112222222211 1 1125
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
..++|++++++.++.... +..+++.++..
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 688999999999997543 34667766643
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=137.19 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=144.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|+++||||+|+||+++++.|.++| ++|++++|.... . .....+.++.+|+.++.. .+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~r~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCGRRAPE------T-VDGRPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCChhh------h-hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999999 999999985422 1 112467889999987631 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH-----cC-CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VG-ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~-----~~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ...+....++.|+.++..+++++.. .+ .++|++||...+.
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------------- 140 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR--------------- 140 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------------
Confidence 899999998643211 2233456789999999999998754 23 3899999986642
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...|.+++.++.+++ +++..++|+.+.++........ ........... + ...+.
T Consensus 141 -~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~--~-------~~~~~ 208 (252)
T PRK07856 141 -PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD--AEGIAAVAATV--P-------LGRLA 208 (252)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC--HHHHHHHhhcC--C-------CCCCc
Confidence 223346799999999999999887653 7888999998876642110000 01111111111 1 11246
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCCCcc
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNPGEF 271 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~ 271 (343)
.++|++++++.++.... .| .+.+.++...
T Consensus 209 ~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~ 241 (252)
T PRK07856 209 TPADIAWACLFLASDLASYVSGANLEVHGGGER 241 (252)
T ss_pred CHHHHHHHHHHHcCcccCCccCCEEEECCCcch
Confidence 78999999999997543 44 5566655443
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-17 Score=136.00 Aligned_cols=203 Identities=18% Similarity=0.117 Sum_probs=137.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----------CCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----------IEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~d 96 (343)
.+|+|+||||+|+||.++++.|.++| ++|+++.|.... . ...+++.+|+.+... .++|
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~------~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d 70 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAID------D----FPGELFACDLADIEQTAATLAQINEIHPVD 70 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCccc------c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCc
Confidence 46899999999999999999999999 999999985432 0 112577899987631 1589
Q ss_pred EEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+|||++|....... ..+....++.|+.++..+..++ ++.+. ++|++||...|+..
T Consensus 71 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------- 134 (234)
T PRK07577 71 AIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL---------------- 134 (234)
T ss_pred EEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC----------------
Confidence 99999987543221 2344556788888877776555 44555 89999998766421
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
....|+.+|...|.+++.++.+ .|+++.++||+.+.++...... .............. + .......
T Consensus 135 -~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~-~~~~~~~~~~~~~~--~-------~~~~~~~ 203 (234)
T PRK07577 135 -DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTR-PVGSEEEKRVLASI--P-------MRRLGTP 203 (234)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccccc-ccchhHHHHHhhcC--C-------CCCCcCH
Confidence 2356999999999888877654 4899999999998876421100 00011111111111 1 1124577
Q ss_pred HHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 245 SDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+|+|++++.++..+. .| .+.+.++
T Consensus 204 ~~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 204 EEVAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred HHHHHHHHHHhCcccCCccceEEEecCC
Confidence 999999999997643 33 5555544
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=141.06 Aligned_cols=201 Identities=18% Similarity=0.121 Sum_probs=135.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------------CCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------------IEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~~~ 95 (343)
.++|+||||+|+||.++++.|.++| ++|+++.|+... +.... ..+++.+.+|+.+... ..+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r~~~~----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRG-YRVLAACRKPDD----VARMN-SLGFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH----hHHHH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999 999999885322 11111 1357788899987521 357
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHH----HHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l----~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|.++|++|...... ...+....++.|+.++.++ ++.+++.+. ++|++||...+. +
T Consensus 76 ~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 139 (256)
T PRK08017 76 YGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------S 139 (256)
T ss_pred eEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------C
Confidence 99999998543211 2233456788898887765 666666766 899999975432 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHH---HHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeEeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYH---RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE-PLTVQKPGTQTRSFC 242 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~---~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v 242 (343)
......|+.+|...|.+.+.+. ...+++++++||+.+..+.. .....+. ......++.....++
T Consensus 140 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 207 (256)
T PRK08017 140 TPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT------------DNVNQTQSDKPVENPGIAARFTL 207 (256)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh------------hcccchhhccchhhhHHHhhcCC
Confidence 2234569999999998776543 34589999999987654321 1111110 111111222334579
Q ss_pred ehHHHHHHHHHHHhcCCCcce
Q 019309 243 YVSDMVDGLIRLMEGENTGPV 263 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~~~~~ 263 (343)
+++|+++++..+++++....+
T Consensus 208 ~~~d~a~~~~~~~~~~~~~~~ 228 (256)
T PRK08017 208 GPEAVVPKLRHALESPKPKLR 228 (256)
T ss_pred CHHHHHHHHHHHHhCCCCCce
Confidence 999999999999988765433
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=136.44 Aligned_cols=205 Identities=17% Similarity=0.076 Sum_probs=140.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+|++|||||+|.||.++++.|.++| ++|++++|..... ..+.++.+|+.++.. .++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 73 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGRI 73 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999 9999998853221 257889999998632 369
Q ss_pred CEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||+||....... ..+....++.|+.++..+++++.+ .+. ++|++||...+. +
T Consensus 74 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 137 (258)
T PRK06398 74 DILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA----------------V 137 (258)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------------C
Confidence 999999986432221 223446679999999888877753 344 899999987653 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCC-------CccHHHHHHHHHHcCCCeEEecCCce
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNID-------DGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
..+...|+.+|...+.+.+.++.+. ++++..++||.+-.+..... ........+.... ....
T Consensus 138 ~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 208 (258)
T PRK06398 138 TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWG---------EMHP 208 (258)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhh---------hcCC
Confidence 3345679999999999999988775 38899999998866531100 0000000011100 0011
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|+|++++.++.... .| .+.+.++
T Consensus 209 ~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg 243 (258)
T PRK06398 209 MKRVGKPEEVAYVVAFLASDLASFITGECVTVDGG 243 (258)
T ss_pred cCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCc
Confidence 1235678999999999987543 33 4555554
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=137.97 Aligned_cols=200 Identities=18% Similarity=0.106 Sum_probs=136.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------CCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------IEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~d 96 (343)
|+|+||||+|+||.++++.|.++| ++|++++|............. ...++.++.+|+.+... .++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999 999999885432222111111 12467889999987631 3699
Q ss_pred EEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+|||++|......... +....++.|+.++..+... +++.+. ++|++||...+. +.
T Consensus 80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~ 143 (270)
T PRK05650 80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM----------------QG 143 (270)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------------CC
Confidence 9999999654322222 2334567887766665554 566665 899999987653 23
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
...+.|+.+|...+.+.+.+..+ .|+++++++|+.+.++....... ......+..... ..++
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 210 (270)
T PRK05650 144 PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLE-------------KSPI 210 (270)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhh-------------cCCC
Confidence 33467999999998888888766 37999999999998775321110 111111111111 1257
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
+++|+|+.++.++++..
T Consensus 211 ~~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 211 TAADIADYIYQQVAKGE 227 (270)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 89999999999998643
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=141.01 Aligned_cols=214 Identities=15% Similarity=0.065 Sum_probs=140.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc-------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------- 91 (343)
+++|+++||||+|+||.++++.|.+.| ++|++..+......+.....+ ....+..+.+|+.+..
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 998887532111111111111 1234667788887642
Q ss_pred -----cCCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 -----LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 -----~~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
..++|++||+||........ ++....++.|+.++..+++++... +.++|++||...+.
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------- 150 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc----------
Confidence 02699999999964322222 223567789999999998877643 23899999987653
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+. |+++..+.|+.+.++....... ........... .
T Consensus 151 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~------~-- 213 (252)
T PRK12747 151 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS---DPMMKQYATTI------S-- 213 (252)
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc---CHHHHHHHHhc------C--
Confidence 22234579999999999998887653 7999999999998874211000 00111111110 0
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
....+.+++|+|+++..++.... .| .+.+.++
T Consensus 214 ~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 214 AFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred cccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 11236788999999999987543 34 4555544
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=138.06 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=143.4
Q ss_pred EEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEEEecCC
Q 019309 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIYHLACP 104 (343)
Q Consensus 33 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi~~a~~ 104 (343)
|||||+|+||.++++.|+++| ++|+++.|+...............+++++.+|+.++. ...+|++||++|.
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 699999999999999999999 9999999853211111111111246888999999873 2358999999986
Q ss_pred CCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 105 ASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 105 ~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
..... ...+....++.|+.++..++++....+. ++|++||...+. +..+...|+.+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~----------------~~~~~~~Y~~sK~a 143 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR----------------PSASGVLQGAINAA 143 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC----------------CCCcchHHHHHHHH
Confidence 43221 2234567789999999999996665555 899999988763 22344679999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 180 AETLMFDYHRQH-GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 180 ~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+.+++.++.+. ++++..++|+.+-++............++....... +. ..+..++|+|+++..++...
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~dva~~~~~l~~~~ 214 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERL--PA-------RRVGQPEDVANAILFLAANG 214 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcC--CC-------CCCcCHHHHHHHHHHHhcCC
Confidence 999999988764 578899999877654311100001111222222211 11 11346799999999999865
Q ss_pred C--CcceEecCCCc
Q 019309 259 N--TGPVNIGNPGE 270 (343)
Q Consensus 259 ~--~~~~~~~~~~~ 270 (343)
. +..|++.++..
T Consensus 215 ~~~G~~~~v~gg~~ 228 (230)
T PRK07041 215 FTTGSTVLVDGGHA 228 (230)
T ss_pred CcCCcEEEeCCCee
Confidence 4 45778777654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-17 Score=138.19 Aligned_cols=204 Identities=11% Similarity=0.094 Sum_probs=140.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~------------ 91 (343)
+.+|+++||||+|.||.++++.|.++| ++|++++|..+......... ....++.++.+|+.+..
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999 99999998542211111111 11246788999998752
Q ss_pred cCCCCEEEEecCCCCc----cccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
+.++|+|||++|.... .....+....+..|+.++..+++++. +.+. ++|++||...+.
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~------------- 152 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT------------- 152 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC-------------
Confidence 2369999999986321 11233456678899999999988774 3444 899999987653
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+++.++.+ .++++..++|+++.++....... ............++ .
T Consensus 153 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~--~~~~~~~~~~~~~~---------~ 218 (257)
T PRK09242 153 ---HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS--DPDYYEQVIERTPM---------R 218 (257)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC--ChHHHHHHHhcCCC---------C
Confidence 2233467999999999999887754 48999999999998875321100 11222222222111 1
Q ss_pred eeeehHHHHHHHHHHHhcC
Q 019309 240 SFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~ 258 (343)
-+...+|++.++..++...
T Consensus 219 ~~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 1446789999999998753
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=129.95 Aligned_cols=201 Identities=16% Similarity=0.072 Sum_probs=144.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+|.++|||||+-||.++++.|.+.| ++|++..|+.+. -+.+...+....+.....|++|.+. .++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~dr-L~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG-AKVVLAARREER-LEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC-CeEEEEeccHHH-HHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 45889999999999999999999999 999999985422 2233333333468889999999732 369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||...... ..+++..+++.|+.+..+...+.. +.+. ++|.+||++.. .+
T Consensus 83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~----------------~~ 146 (246)
T COG4221 83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR----------------YP 146 (246)
T ss_pred cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc----------------cc
Confidence 99999999765322 234667899999999999887763 4444 99999998743 23
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
....+.|+.+|+....+...+.++. +++++.+-||.+-......- ... -........ ....++
T Consensus 147 y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g-~~~~~~~~y------------~~~~~l 213 (246)
T COG4221 147 YPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEG-DDERADKVY------------KGGTAL 213 (246)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCc-hhhhHHHHh------------ccCCCC
Confidence 3445679999999999888887764 79999999988854321000 000 001111111 123478
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
..+|+|+++.++++.+.
T Consensus 214 ~p~dIA~~V~~~~~~P~ 230 (246)
T COG4221 214 TPEDIAEAVLFAATQPQ 230 (246)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 88999999999999876
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=138.84 Aligned_cols=203 Identities=13% Similarity=0.065 Sum_probs=138.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+.++++|||||+|+||.++++.|+++| ++|++++|+.... +.+...+. ..++.++.+|+.++..
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAARTESQL-DEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 9999999853221 11111111 2367888999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH-----cCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~-----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ..++....+..|+.++..+++++.. .+. ++|++||.....
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 152 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------- 152 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-------------
Confidence 36899999998643221 1234567789999999999999863 333 899999975431
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+++.+..+. ++++..++|+.+..+....... ...+...... . .+ ...
T Consensus 153 ---~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~-~-~~-------~~~ 218 (263)
T PRK07814 153 ---AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAA--NDELRAPMEK-A-TP-------LRR 218 (263)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccC--CHHHHHHHHh-c-CC-------CCC
Confidence 22334679999999999999988764 4688888998876553211000 0111111111 1 11 112
Q ss_pred eeehHHHHHHHHHHHhcC
Q 019309 241 FCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~ 258 (343)
+..++|++++++.++...
T Consensus 219 ~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 219 LGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 467899999999999754
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=139.76 Aligned_cols=216 Identities=14% Similarity=0.133 Sum_probs=142.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
+.+++++||||+|+||+++++.|.++| ++|++++|+............. ..++.++.+|+.+.. ..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999 9999999853221111111111 135788999998763 23
Q ss_pred CCCEEEEecCCCCccc-------------------cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccC
Q 019309 94 EVDQIYHLACPASPIF-------------------YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG 149 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-------------------~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~ 149 (343)
++|++||+||...... ...+....++.|+.++..++.++ .+.+. ++|++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 166 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT 166 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence 6999999998543211 12334567788988887655544 44444 899999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC---CccHHHHHHHHH
Q 019309 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID---DGRVVSNFIAQA 223 (343)
Q Consensus 150 ~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~---~~~~~~~~~~~~ 223 (343)
+..+...|+.+|...+.+++.++.+. ++++..++|+.+.++..... ............
T Consensus 167 ----------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 167 ----------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred ----------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 33344579999999999999888765 79999999999988742100 000001111111
Q ss_pred HcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc-CC---Cc-ceEecCC
Q 019309 224 LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG-EN---TG-PVNIGNP 268 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~-~~---~~-~~~~~~~ 268 (343)
.... ....+...+|+|++++.++.. .. .| .+.+.++
T Consensus 231 ~~~~---------p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHT---------PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred hccC---------CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 1111 112356789999999998876 33 34 4555444
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=139.03 Aligned_cols=194 Identities=14% Similarity=0.027 Sum_probs=136.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.+++++||||+|+||.+++++|+++| ++|++++|......+...... ...++.++.+|+.++.. .+
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEG-VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999 899999985432211111111 12368889999987632 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||++|...... .+.+....++.|+.++..+.+++. +.+. ++|++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 148 (239)
T PRK07666 85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK---------------- 148 (239)
T ss_pred ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc----------------
Confidence 999999998653221 123345678999999888888775 3444 899999976553
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+++.++.+ .|+++.++||+.+.++.... . .... . ....++
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~--------~---~~~~------~---~~~~~~ 208 (239)
T PRK07666 149 GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVD--------L---GLTD------G---NPDKVM 208 (239)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhh--------c---cccc------c---CCCCCC
Confidence 2223356999999999888877654 48999999999988764110 0 0000 0 112357
Q ss_pred ehHHHHHHHHHHHhcC
Q 019309 243 YVSDMVDGLIRLMEGE 258 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~ 258 (343)
..+|+|+.++.+++.+
T Consensus 209 ~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 209 QPEDLAEFIVAQLKLN 224 (239)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8899999999999875
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=141.37 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=131.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------CCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------IEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------~~~d~vi 99 (343)
|+++||||||+|+||+++++.|+++| ++|+++.|..... ..+.... ...++.++.+|+.++.. .++|+||
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG-HNVIAGVQIAPQV-TALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 46789999999999999999999999 9999998853211 1111111 12357889999988632 2799999
Q ss_pred EecCCCCcccc----ccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 100 ~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
||||....... ..+....++.|+.++..+.+ .+.+.+. +||++||...+. .....
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~----------------~~~~~ 142 (257)
T PRK09291 79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLI----------------TGPFT 142 (257)
T ss_pred ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhcc----------------CCCCc
Confidence 99986542221 12234566778877666554 4455565 899999975432 11223
Q ss_pred CchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcC--CCeEEecCCceeEeeeehH
Q 019309 171 SCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG--EPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~v~ 245 (343)
..|+.+|...|.+++.+..+ .|++++++||+.+..+... .....+. ..... ..+.. .+.......+..+
T Consensus 143 ~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~----~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 216 (257)
T PRK09291 143 GAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFND----TMAETPK-RWYDPARNFTDP-EDLAFPLEQFDPQ 216 (257)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchh----hhhhhhh-hhcchhhHHHhh-hhhhccccCCCHH
Confidence 56999999999988776654 5899999999877543210 0011010 00000 00110 0111233457888
Q ss_pred HHHHHHHHHHhcCC
Q 019309 246 DMVDGLIRLMEGEN 259 (343)
Q Consensus 246 D~a~~i~~~~~~~~ 259 (343)
|+++.++.++..+.
T Consensus 217 ~~~~~~~~~l~~~~ 230 (257)
T PRK09291 217 EMIDAMVEVIPADT 230 (257)
T ss_pred HHHHHHHHHhcCCC
Confidence 88888888886543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=137.61 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=139.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
|+++++||||+|+||.++++.|.++| ++|++++|+............. ..++.++.+|+.++. ..+
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 9999998854221111111111 246788999999863 236
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+||||||....... .++....++.|+.++..++.++.+ .+ .++|++||...+.
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 144 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV--------------- 144 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc---------------
Confidence 8999999986432211 223456788999988776666543 22 3899999976542
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC-------ccHHHHHHHHHHcCCCeEEecC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD-------GRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+++.++.+ .|+++..++|+.+.++...... ............. . ++
T Consensus 145 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---- 217 (256)
T PRK08643 145 -GNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAK-D-IT---- 217 (256)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhc-c-CC----
Confidence 1122356999999999988887764 4799999999998876411000 0000000000111 0 10
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|+++++..++.... +| .+.+.++
T Consensus 218 ---~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg 252 (256)
T PRK08643 218 ---LGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGG 252 (256)
T ss_pred ---CCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 1135678999999999997543 44 4455444
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=136.80 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=142.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++++|||||+|+||.++++.|.++| +.|++++|.............. ..++.++.+|+.+... ..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999 8999998854221111111111 2357788999987521 25
Q ss_pred CCEEEEecCCCCcc-------------ccccChHHHHHHHHHHHHHHHHHHH----Hc-C-CeEEEEeCCcccCCCCCCC
Q 019309 95 VDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAK----RV-G-ARILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~l~~~a~----~~-~-~r~i~~SS~~v~~~~~~~~ 155 (343)
+|+|||++|..... ....+....+..|+.++..+...+. +. . .++|++||...|+.
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~----- 157 (253)
T PRK08217 83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN----- 157 (253)
T ss_pred CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC-----
Confidence 89999999854311 1122344567889888876665433 22 2 27999999876642
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
.+...|+.+|...|.+++.++.+ .++++..++|+.+.++... ..............+
T Consensus 158 ------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~----~~~~~~~~~~~~~~~---- 217 (253)
T PRK08217 158 ------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTA----AMKPEALERLEKMIP---- 217 (253)
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc----ccCHHHHHHHHhcCC----
Confidence 12356999999999998888764 4899999999999887531 111223332222221
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPG 269 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~ 269 (343)
...+.+++|+++++..+++... +..+++.++-
T Consensus 218 -----~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -----VGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGGL 251 (253)
T ss_pred -----cCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCCc
Confidence 1235688999999999997643 4477777653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=135.91 Aligned_cols=214 Identities=15% Similarity=0.040 Sum_probs=143.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+.++++|||||+|.||.+++++|+++| ++|++++|+............. ...+..+.+|+.+... .
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999 9999998853222211111111 2356778899988631 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|...... ...+....++.|+.++..++.++.+ .+. ++|++||.....
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 150 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL--------------- 150 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc---------------
Confidence 5899999998643211 2234456789999998888887654 344 899999975421
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...|.+++.++.+ +|+++..++||++.++....... ...+....... .+ ...+
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~--~~~~~~~~~~~--~p-------~~~~ 218 (254)
T PRK08085 151 -GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE--DEAFTAWLCKR--TP-------AARW 218 (254)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc--CHHHHHHHHhc--CC-------CCCC
Confidence 2223457999999999999998765 48999999999998874221100 01111111111 11 1236
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+|+++++..++.... .| ...+.++
T Consensus 219 ~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 219 GDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred cCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 678999999999997543 44 4444443
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=136.53 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=131.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~~ 93 (343)
|+|+||||||+|+||..+++.|+++| ++|+++.+......+.....+. ..++.++.+|+.+.. ..
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999 8887765422111111111111 236888999998763 13
Q ss_pred CCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHH----c----CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----V----GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~----~----~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.+|+|||+||...... ...+....+..|+.++..++..+.+ . +.+||++||...+..
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~---------- 149 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLG---------- 149 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCC----------
Confidence 5999999998653211 1223345688999988777654432 1 126999999754321
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
.......|+.+|...+.+++.++.+. ++++.++||+.+..+...... . ......... ..+.
T Consensus 150 -----~~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~-~--~~~~~~~~~--~~~~------ 213 (248)
T PRK06947 150 -----SPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGG-Q--PGRAARLGA--QTPL------ 213 (248)
T ss_pred -----CCCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccC-C--HHHHHHHhh--cCCC------
Confidence 11112459999999999888887664 799999999999887532110 0 111111111 1110
Q ss_pred eEeeeehHHHHHHHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
--...++|+++.++.++..+.
T Consensus 214 -~~~~~~e~va~~~~~l~~~~~ 234 (248)
T PRK06947 214 -GRAGEADEVAETIVWLLSDAA 234 (248)
T ss_pred -CCCcCHHHHHHHHHHHcCccc
Confidence 114577999999999988654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=135.09 Aligned_cols=211 Identities=15% Similarity=0.102 Sum_probs=137.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
.+|.++||||+|+||+++++.|.++| ++|++..+....... ...... ....+..+.+|+.|.. ..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDG-FKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999 888775442211111 111111 1235667889998762 23
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||++|...... ...+....++.|+.++..+.++ +++.+. ++|++||.....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 145 (246)
T PRK12938 81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------------- 145 (246)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC---------------
Confidence 6899999998653211 2234556788999886665544 455666 899999975431
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+.+.+.++ .++++..++|+.+.++.... .....+.......+ ...+
T Consensus 146 -~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~---------~~~~ 211 (246)
T PRK12938 146 -GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIP---------VRRL 211 (246)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh----cChHHHHHHHhcCC---------ccCC
Confidence 2223467999999999888777654 47999999999998775221 11222222222211 1124
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
..++|+++++..++.... +..+.+.++
T Consensus 212 ~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 567999999999887543 334555443
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=133.77 Aligned_cols=206 Identities=15% Similarity=0.090 Sum_probs=142.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~ 100 (343)
+++|+++||||+|+||.++++.|.++| ++|++++|..... ...++.++.+|+.++ ....+|+|||
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~ 73 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG-AQVYGVDKQDKPD--------LSGNFHFLQLDLSDDLEPLFDWVPSVDILCN 73 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC-CEEEEEeCCcccc--------cCCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence 367899999999999999999999999 9999998853211 123678889999775 2346999999
Q ss_pred ecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 101 LACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 101 ~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
++|.... .....+....++.|+.++..+++++.. .+. ++|++||...+. +....
T Consensus 74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~ 137 (235)
T PRK06550 74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV----------------AGGGG 137 (235)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCC
Confidence 9985421 112234556789999999998888753 333 899999987642 11223
Q ss_pred CchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 171 SCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
..|+.+|...+.+.+.++.+. |+++.+++|+++.++....... -........... + ...+...+|+
T Consensus 138 ~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~--~-------~~~~~~~~~~ 206 (235)
T PRK06550 138 AAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE--PGGLADWVARET--P-------IKRWAEPEEV 206 (235)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC--chHHHHHHhccC--C-------cCCCCCHHHH
Confidence 569999999999888877654 8999999999998875321100 011112222211 1 1225678999
Q ss_pred HHHHHHHHhcCC---Cc-ceEecCC
Q 019309 248 VDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 248 a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|++++.++.... .| .+.+.++
T Consensus 207 a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 207 AELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHcChhhccCCCcEEEECCc
Confidence 999999996543 33 4455443
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-17 Score=143.74 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=123.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh-cCCCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW-IGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.+++|+||||+|+||.++++.|+++| ++|++++|+..........+ .....+.++.+|+.+... ..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 99999988532221111111 112368889999988632 24
Q ss_pred CCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHH----cC---CeEEEEeCCcccCCCCC----CCCCC
Q 019309 95 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSEVYGDPLI----HPQPE 158 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~----~~---~r~i~~SS~~v~~~~~~----~~~~e 158 (343)
+|+|||+||..... ...++....+..|+.++..+++++.. .+ .|+|++||...+..... .+..+
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~ 163 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA 163 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence 99999999964321 12334567789999999888877753 22 39999999876532111 01010
Q ss_pred C--CC-------------CCCCCCCCCCchHHhHHHHHHHHHHHHHHh----CCceEEEEeccccCCC
Q 019309 159 T--YW-------------GNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIQIRIARIFNTYGPR 207 (343)
Q Consensus 159 ~--~~-------------~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~----~~~~~i~R~~~v~G~~ 207 (343)
+ +. ....+..+...|+.+|...+.+.+.+++++ |+++..++||+|++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0 00 011234566789999999988888777654 7999999999998654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=133.83 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=134.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi 99 (343)
++|+||||||+|.||+++++.|.++| ++|+++.|... +....+....++.++.+|+.+.. ..++|++|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~~~~~~---~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFTYAGSK---DAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCCH---HHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 57899999999999999999999999 88888765321 11222111124677889998753 23589999
Q ss_pred EecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 100 HLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 100 ~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
|++|...... ...+....++.|+.++..++..+... +.++|++||..... .+..+...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------~~~~~~~~ 145 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR---------------MPVAGMAA 145 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc---------------CCCCCCcc
Confidence 9998653211 22345678899999998887666543 23899999975421 13334567
Q ss_pred hHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
|+.+|...|.+++.++.+ .|+++.+++||.+..+..... . ......... .++ ..+..++|+++
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~-~----~~~~~~~~~--~~~-------~~~~~p~~~a~ 211 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN-G----PMKDMMHSF--MAI-------KRHGRPEEVAG 211 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc-c----HHHHHHHhc--CCC-------CCCCCHHHHHH
Confidence 999999999999887765 479999999999877642110 0 111111111 111 12467899999
Q ss_pred HHHHHHhcCC
Q 019309 250 GLIRLMEGEN 259 (343)
Q Consensus 250 ~i~~~~~~~~ 259 (343)
++..++....
T Consensus 212 ~~~~l~s~~~ 221 (237)
T PRK12742 212 MVAWLAGPEA 221 (237)
T ss_pred HHHHHcCccc
Confidence 9999987543
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=135.94 Aligned_cols=215 Identities=16% Similarity=0.069 Sum_probs=142.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
+.+++++||||+|+||+++++.|.++| ++|++++|+.....+...+.+. ..++.++.+|+.++. .
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999 9999998854322122211111 235778899998763 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|++|||||...... ...+....++.|+.++..++.++ ++.+. ++|++||...+..
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------- 151 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIV------------- 151 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCC-------------
Confidence 35899999999654211 22344567889999987776665 34444 8999999765421
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.+..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++.... ... .......... .++ ..
T Consensus 152 -~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~-~~~~~~~~~~--~p~-------~r 218 (254)
T PRK06114 152 -NRGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEM-VHQTKLFEEQ--TPM-------QR 218 (254)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccc-hHHHHHHHhc--CCC-------CC
Confidence 11112356999999999998888764 47999999999998875221 011 1111111111 111 12
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+..++|++++++.++.... .| .+.+.++
T Consensus 219 ~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 5678999999999987543 33 5555544
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=135.40 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=139.0
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------CCCCE
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------IEVDQ 97 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~~d~ 97 (343)
|+|||++|+||+++++.|+++| ++|++++|............+. ...+.++.+|+.+... ..+|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999 9999998854221111111111 1247889999987742 25899
Q ss_pred EEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcc-cCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v-~~~~~~~~~~e~~~~~~~~~ 167 (343)
|||++|..... ....++...+..|+.++..+++++.+ .+. +||++||... ++.
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~----------------- 142 (239)
T TIGR01830 80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN----------------- 142 (239)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC-----------------
Confidence 99999965321 12234566788999999999998865 344 8999999654 431
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.....|+.+|...+.+++.+..+ .|+++.++||+.+.++.... ............... .-+.++
T Consensus 143 ~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~ 209 (239)
T TIGR01830 143 AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK----LSEKVKKKILSQIPL---------GRFGTP 209 (239)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh----cChHHHHHHHhcCCc---------CCCcCH
Confidence 12356999999999888877654 48999999999886653211 111122222222111 125678
Q ss_pred HHHHHHHHHHHhcCC----CcceEecCC
Q 019309 245 SDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
+|+++++..++.... +..|++.++
T Consensus 210 ~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 999999998885432 447777654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=138.62 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=135.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------ 91 (343)
.+.+++|+||||+|+||.++++.|.++| ++|++++|+.+.. +.+...+. ...+.++.+|+.|..
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l-~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLL-DAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 9999999853221 11111111 235778999999863
Q ss_pred cCCCCEEEEecCCCCcccc------ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~------~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..++|+||||||....... +.+....++.|+.++..+++++ ++.+. ++|++||.+++..
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 184 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE---------- 184 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC----------
Confidence 2369999999986532221 1233457888998877777655 35555 8999999766531
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+++.+..+. ++++..++||.+-.+.... .. .. .+
T Consensus 185 -----~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~---------------~~--~~--~~-- 238 (293)
T PRK05866 185 -----ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP---------------TK--AY--DG-- 238 (293)
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc---------------cc--cc--cC--
Confidence 11223579999999999888877653 7999999998776553110 00 00 01
Q ss_pred eEeeeehHHHHHHHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+..+++|+.++.++++..
T Consensus 239 -~~~~~pe~vA~~~~~~~~~~~ 259 (293)
T PRK05866 239 -LPALTADEAAEWMVTAARTRP 259 (293)
T ss_pred -CCCCCHHHHHHHHHHHHhcCC
Confidence 124678999999999998643
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=136.46 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=136.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
++|+++||||+|.||.+++++|+++| ++|++++|+..... .+...+. ..++.++.+|+++... .
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALE-ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999 89999998542211 1111111 2468889999998631 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|...... ...+....+..|+.++..+++.+ .+.+. ++|++||...++
T Consensus 83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 147 (241)
T PRK07454 83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN--------------- 147 (241)
T ss_pred CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc---------------
Confidence 5999999998653221 12234556788888887776665 44444 899999988764
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.++||+.+-.+..... . . . ... .....
T Consensus 148 -~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~--~-----~----~---~~~-----~~~~~ 207 (241)
T PRK07454 148 -AFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTE--T-----V----Q---ADF-----DRSAM 207 (241)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccc--c-----c----c---ccc-----ccccC
Confidence 2223467999999999988877643 489999999998877641100 0 0 0 000 01125
Q ss_pred eehHHHHHHHHHHHhcCC
Q 019309 242 CYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~ 259 (343)
+..+|+|++++.++..+.
T Consensus 208 ~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 208 LSPEQVAQTILHLAQLPP 225 (241)
T ss_pred CCHHHHHHHHHHHHcCCc
Confidence 788999999999998765
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=136.29 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=137.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~------------~ 92 (343)
++++++||||+|+||.+++++|.++| ++|++++|+.....+..... .....+.++.+|+.++. .
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36889999999999999999999999 99999998543221111111 11346888999999873 2
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||....... .......++.|+.++..+++++. +.+. +||++||......
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------- 146 (248)
T PRK08251 80 GGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG------------- 146 (248)
T ss_pred CCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC-------------
Confidence 369999999986543221 22334567899999888887764 4455 8999999765321
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
...+...|+.+|...+.+.+.+..+. +++++.++|+++.++.... .+. ...
T Consensus 147 --~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--------------~~~----------~~~ 200 (248)
T PRK08251 147 --LPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK--------------AKS----------TPF 200 (248)
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc--------------ccc----------CCc
Confidence 11123569999999999888877653 6899999999987653100 000 112
Q ss_pred eeehHHHHHHHHHHHhcCCCcce
Q 019309 241 FCYVSDMVDGLIRLMEGENTGPV 263 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~~~~~ 263 (343)
.++.+|.|++++.++++....+|
T Consensus 201 ~~~~~~~a~~i~~~~~~~~~~~~ 223 (248)
T PRK08251 201 MVDTETGVKALVKAIEKEPGRAA 223 (248)
T ss_pred cCCHHHHHHHHHHHHhcCCCeEE
Confidence 57789999999999987554443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=137.03 Aligned_cols=218 Identities=15% Similarity=0.094 Sum_probs=139.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+|++|||||+|.||.++++.|.++| ++|+++.|+ ............ ..++.++.+|+.++. ...
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999 999999885 221111111111 235888999999862 235
Q ss_pred CCEEEEecCCCCc-ccc----ccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-IFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~-~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||.... ... .......++.|+.++..++.++. +.+.++|++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (272)
T PRK08589 83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA---------------- 146 (272)
T ss_pred cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC----------------
Confidence 8999999986532 111 12334567788888876666543 4445899999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+++.++.+. |+++..+.||.|..+.........-............. . . ....+.
T Consensus 147 ~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~--~--~~~~~~ 221 (272)
T PRK08589 147 ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKW-M--T--PLGRLG 221 (272)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhc-c--C--CCCCCc
Confidence 22233579999999999999888654 79999999999876642110000000000001000000 0 0 011256
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.++|++++++.++.... .| .+.+.++
T Consensus 222 ~~~~va~~~~~l~s~~~~~~~G~~i~vdgg 251 (272)
T PRK08589 222 KPEEVAKLVVFLASDDSSFITGETIRIDGG 251 (272)
T ss_pred CHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence 78999999999987543 44 4455544
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=135.64 Aligned_cols=212 Identities=13% Similarity=0.128 Sum_probs=142.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+.+++||||||+|+||.++++.|.+.| +.|+++.|. ...+.+...+. ...+.++.+|+.+...
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTHG--TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCC--cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 999999885 12222222221 2468889999998632
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|++||++|...... ...+....++.|+.++..+..++. +.+. ++|++||...+.
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 155 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ-------------- 155 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc--------------
Confidence 25899999998653221 122445677889888777776554 4444 899999987653
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...|.+++.++.+. |+++..++||.+..+........ .......... ++ ...
T Consensus 156 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~--~~-------~~~ 222 (258)
T PRK06935 156 --GGKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD--KNRNDEILKR--IP-------AGR 222 (258)
T ss_pred --CCCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC--hHHHHHHHhc--CC-------CCC
Confidence 22223569999999999999888754 79999999999877642111000 0111111111 11 123
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+..++|++.++..++.... .| ++.+.++
T Consensus 223 ~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred CCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 6777999999999887543 33 5555544
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=136.94 Aligned_cols=203 Identities=15% Similarity=0.074 Sum_probs=138.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~ 92 (343)
+++|+|+||||+|+||+++++.|.++| ++|+++.|+..... .+...+ ...++.++.+|+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG-AKVVLASRRVERLK-ELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999 89999988532211 111111 1246788999998762 1
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----c---------CCeEEEEeCCcccCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V---------GARILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~---------~~r~i~~SS~~v~~~~~~~~ 155 (343)
..+|+|||++|...... ...++...++.|+.++..+++++.. . +.++|++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------ 158 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR------ 158 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC------
Confidence 25899999998643221 1234556788999999888877642 1 13899999987652
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
+......|+.+|...+.+++.++.+ .++++.+++||+++++..... +........ .. .++
T Consensus 159 ----------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~---~~~~~~~~~-~~-~~~-- 221 (258)
T PRK06949 159 ----------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHH---WETEQGQKL-VS-MLP-- 221 (258)
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhc---cChHHHHHH-Hh-cCC--
Confidence 2233467999999999999888765 479999999999998753210 111111111 11 111
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+...+|+++++..++....
T Consensus 222 -----~~~~~~p~~~~~~~~~l~~~~~ 243 (258)
T PRK06949 222 -----RKRVGKPEDLDGLLLLLAADES 243 (258)
T ss_pred -----CCCCcCHHHHHHHHHHHhChhh
Confidence 1135567999999999987543
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=135.09 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=140.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.++++|||+||+|+||.++++.|+++| ++|+++ .|............. ....+.++.+|+.++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999 999888 774322111111111 12358889999988632
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||++|...... ..++....+..|+.++..++.++.. .+. +||++||...+..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------------- 148 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------------- 148 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC-------------
Confidence 26999999998753211 1223356678899998887777653 444 7999999766531
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
......|+.+|...+.+++.+..+ .|++++.+||+.+.++..... ............ ....
T Consensus 149 ---~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~----~~~~~~~~~~~~---------~~~~ 212 (247)
T PRK05565 149 ---ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSF----SEEDKEGLAEEI---------PLGR 212 (247)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccccc----ChHHHHHHHhcC---------CCCC
Confidence 112346999999988888777654 389999999999876542111 111111111100 1123
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+..++|++++++.++.... +| .+++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred CCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 5688999999999997644 33 4555544
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=134.62 Aligned_cols=214 Identities=13% Similarity=0.057 Sum_probs=140.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+++++||||+|.||.++++.|.++| ++|++++|+.....+....+.. ..++.++.+|+.++. ...
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999999 9999999864322211111111 235788899998863 236
Q ss_pred CCEEEEecCCCCc--cc---cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~--~~---~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|++||+||.... .. ..++....++.|+.++..+.. .+++.+. ++|++||...+..
T Consensus 84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-------------- 149 (254)
T PRK07478 84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-------------- 149 (254)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc--------------
Confidence 9999999986432 11 123445678999987776655 4445544 8999999865521
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|.+.+.+.+.++.+. |+++..++||.+-.+........ .... ...... .+ ...+
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~-~~~~~~-~~-------~~~~ 217 (254)
T PRK07478 150 -GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT--PEAL-AFVAGL-HA-------LKRM 217 (254)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC--HHHH-HHHHhc-CC-------CCCC
Confidence 12234579999999999999887764 69999999999876632110000 1111 111111 00 1125
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..++|+|++++.++.... .| .+.+.++
T Consensus 218 ~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 218 AQPEEIAQAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCeEEeCCc
Confidence 678999999999997543 33 4555443
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=136.99 Aligned_cols=216 Identities=13% Similarity=0.003 Sum_probs=142.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 92 (343)
.+|+++||||+|+||.++++.|.++| ++|++++|+.+...+....+. ...++.++.+|+.++..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999 999999985432222222211 12457889999988631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|++||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 150 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK-------------- 150 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc--------------
Confidence 36999999998643211 223455678899999988888764 3444 899999986542
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC-Cc-cHHHHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID-DG-RVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+-.+..... .. ............. .+ .
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~-------~ 219 (260)
T PRK07063 151 --IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLAL--QP-------M 219 (260)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhc--CC-------C
Confidence 22233569999999999999888664 79999999998866531100 00 0000011111111 11 1
Q ss_pred EeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
..+..++|+|++++.++.... .| ...+.++.
T Consensus 220 ~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 220 KRIGRPEEVAMTAVFLASDEAPFINATCITIDGGR 254 (260)
T ss_pred CCCCCHHHHHHHHHHHcCccccccCCcEEEECCCe
Confidence 125678999999999987643 33 44555543
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=134.54 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=138.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++++++||||+|+||+++++.|+++| +.|++..|...... .+.... ..++.++.+|+.+.. +.++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVEKLE-ALAAEL-GERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHH-HHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999 88888776422111 111111 236788899998763 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|...... ...+....++.|+.++..+++++.+ .+. +||++||...+..
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 145 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTG---------------- 145 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcC----------------
Confidence 99999998653211 2234566788999998888887642 344 8999999754321
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+++.++.+ .++++..++|+.+..+.... ..... .....+ ..+ ...+.+
T Consensus 146 ~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~-~~~~~~-~~~-------~~~~~~ 212 (245)
T PRK12936 146 NPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK----LNDKQ-KEAIMG-AIP-------MKRMGT 212 (245)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc----cChHH-HHHHhc-CCC-------CCCCcC
Confidence 112346999999888887776654 47999999999876543211 00111 111111 111 122567
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
++|+++++..++.... +..+++.++
T Consensus 213 ~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 213 GAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred HHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 8999999998886533 336777665
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=133.75 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=140.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
+++++|+||||+|+||.++++.|.++| ++|++++|.............. ...+.++.+|+.+.. +.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999 8999999853221111111111 135678899998763 12
Q ss_pred CCCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|++||++|.... .....+....++.|+.++..++.++ ++.+. ++|++||...+.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 150 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------------- 150 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC--------------
Confidence 58999999985321 1122234467889999988777666 44444 899999975432
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++.+. |+++..+.|+.+-.+........ ........... + ...
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~--~-------~~~ 217 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN--DAILKQALAHI--P-------LRR 217 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC--HHHHHHHHccC--C-------CCC
Confidence 22344679999999999999887653 79999999998866532110000 11122222111 1 112
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGN 267 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~ 267 (343)
+..++|+|+++..++.... .| .+.+.+
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~dg 248 (252)
T PRK07035 218 HAEPSEMAGAVLYLASDASSYTTGECLNVDG 248 (252)
T ss_pred cCCHHHHHHHHHHHhCccccCccCCEEEeCC
Confidence 5677999999999997653 34 445443
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-16 Score=133.40 Aligned_cols=216 Identities=20% Similarity=0.218 Sum_probs=153.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a~~ 104 (343)
|+||||||||++|++++++|+++| ++|++..|+. +...... .++++..+|+.++. +.+.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~----~~~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVRNP----EAAAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEeCH----HHHHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 689999999999999999999999 9999999853 2222222 68999999999884 4589999998753
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
.. .+. ...........+..+.+. .++ +++++|...+. ......|..+|..+|..
T Consensus 74 ~~-----~~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~------------------~~~~~~~~~~~~~~e~~ 128 (275)
T COG0702 74 LD-----GSD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD------------------AASPSALARAKAAVEAA 128 (275)
T ss_pred cc-----ccc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC------------------CCCccHHHHHHHHHHHH
Confidence 32 111 122233333333333333 335 78888876542 12235699999999999
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
+.. .|++++++|+..+|.... ..+ .......+..... .+....+++..+|++.++..++..+. ..
T Consensus 129 l~~----sg~~~t~lr~~~~~~~~~-----~~~--~~~~~~~~~~~~~--~~~~~~~~i~~~d~a~~~~~~l~~~~~~~~ 195 (275)
T COG0702 129 LRS----SGIPYTTLRRAAFYLGAG-----AAF--IEAAEAAGLPVIP--RGIGRLSPIAVDDVAEALAAALDAPATAGR 195 (275)
T ss_pred HHh----cCCCeEEEecCeeeeccc-----hhH--HHHHHhhCCceec--CCCCceeeeEHHHHHHHHHHHhcCCcccCc
Confidence 864 489999999766655431 111 2222333333332 23347899999999999999998774 67
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcce
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEI 290 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~ 290 (343)
+|.+++++..+..++.+.+.+..|++...
T Consensus 196 ~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 196 TYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred EEEccCCceecHHHHHHHHHHHhCCccee
Confidence 99999999999999999999999988776
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=133.33 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=134.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch-hhhc--CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-KKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
..+++|+||||+|.||.+++++|+++|.++|+++.|+.....+.+ .+.. ...++.++.+|+.|...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 456899999999999999999999995389999998654312211 1111 12368899999987631
Q ss_pred CCCCEEEEecCCCCcc-ccccChH---HHHHHHHHHHHH----HHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-FYKYNPV---KTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-~~~~~~~---~~~~~nv~~~~~----l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||++|..... ..+.++. +.++.|+.++.. ++..+++.+. ++|++||...+.
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~-------------- 151 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER-------------- 151 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC--------------
Confidence 2699999999865321 1111221 357888887765 5667777766 999999986431
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|.....+.+.+.. .+++++.+++|+.+..+... .... . ..
T Consensus 152 --~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~---------------~~~~-----~----~~ 205 (253)
T PRK07904 152 --VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA---------------HAKE-----A----PL 205 (253)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc---------------cCCC-----C----CC
Confidence 122335699999999877666543 45899999999998875310 0000 0 11
Q ss_pred eeehHHHHHHHHHHHhcCCCc
Q 019309 241 FCYVSDMVDGLIRLMEGENTG 261 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~~~ 261 (343)
.+..+|+|+.++.+++++...
T Consensus 206 ~~~~~~~A~~i~~~~~~~~~~ 226 (253)
T PRK07904 206 TVDKEDVAKLAVTAVAKGKEL 226 (253)
T ss_pred CCCHHHHHHHHHHHHHcCCCE
Confidence 468899999999999876543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=133.25 Aligned_cols=205 Identities=13% Similarity=0.044 Sum_probs=140.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
..+|+|+||||+|+||+++++.|.++| +.|+++.|+.+.......... ...++.++.+|+.++.. .
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999 999999985322111111111 12358899999988632 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|...... ...+....+..|+.++..+...+. +.+. ++|++||...+.
T Consensus 88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--------------- 152 (256)
T PRK06124 88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV--------------- 152 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc---------------
Confidence 5799999998653211 123445678899998888886554 3555 899999976542
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+++.++.+ .++++..++|+.+.++...... ....+....... .+ ...+
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~--~~~~~~~~~~~~--~~-------~~~~ 220 (256)
T PRK06124 153 -ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMA--ADPAVGPWLAQR--TP-------LGRW 220 (256)
T ss_pred -CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhc--cChHHHHHHHhc--CC-------CCCC
Confidence 2222357999999999988887654 3799999999999887521100 001111111111 11 1237
Q ss_pred eehHHHHHHHHHHHhcCC
Q 019309 242 CYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~ 259 (343)
++++|++++++.++....
T Consensus 221 ~~~~~~a~~~~~l~~~~~ 238 (256)
T PRK06124 221 GRPEEIAGAAVFLASPAA 238 (256)
T ss_pred CCHHHHHHHHHHHcCccc
Confidence 889999999999998654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=135.00 Aligned_cols=213 Identities=16% Similarity=0.128 Sum_probs=141.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+++++||||+|.||.++++.|.++| ++|++++|+.... +.+...+ ..++.++.+|+.+.. +..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDIDADNG-AAVAASL-GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 9999999854221 1222222 246888999999873 2368
Q ss_pred CEEEEecCCCCcc---ccccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 96 d~vi~~a~~~~~~---~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|++||+||..... ....+....++.|+.++..+++++.. .+.++|++||...+. +..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 145 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------------AQT 145 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------------CCC
Confidence 9999999864321 12334456788899998888887653 223899999976542 112
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...+.+.+.++.+. |+++..++|+.+..+......... ......... ...+ ...+...+
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~-~~~~~~~~~-~~~p-------~~r~~~p~ 216 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGD-RAKADRVAA-PFHL-------LGRVGDPE 216 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccc-hhHHHHhhc-ccCC-------CCCccCHH
Confidence 23569999999999998887653 799999999987665311000000 000011110 0001 11246789
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|+|+++..++.... .| .+.+.++
T Consensus 217 dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 217 EVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred HHHHHHHHHcCccccCccCcEEEECCC
Confidence 99999999997543 33 5565554
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=134.74 Aligned_cols=202 Identities=10% Similarity=0.026 Sum_probs=137.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
+.+|+++||||+|.||.+++++|.++| ++|+++.|... +.....+. ..++.++.+|+.+.. .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGVAEA---PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCchH---HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 99998877421 11111111 246788999999873 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||...... ...+....++.|+.++..+.+++. +.+ .++|++||...+..
T Consensus 82 g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------------ 149 (251)
T PRK12481 82 GHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG------------ 149 (251)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC------------
Confidence 35999999998653221 234456678899988887777664 333 38999999876532
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|...+.+.+.++.+ +|+++..++||.+-.+....... ........... ++. .
T Consensus 150 ----~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~--~p~-------~ 214 (251)
T PRK12481 150 ----GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRA--DTARNEAILER--IPA-------S 214 (251)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhccc--ChHHHHHHHhc--CCC-------C
Confidence 122346999999999999888764 48999999999887653110000 00111111111 111 1
Q ss_pred eeeehHHHHHHHHHHHhcCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~ 259 (343)
.+..++|+|+++..++....
T Consensus 215 ~~~~peeva~~~~~L~s~~~ 234 (251)
T PRK12481 215 RWGTPDDLAGPAIFLSSSAS 234 (251)
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 25678999999999997543
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=134.52 Aligned_cols=216 Identities=15% Similarity=0.073 Sum_probs=141.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
+.+++++||||+|+||+++++.|+++| ++|+++.|... ..+...... ...++.++.+|+.+.. +.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG-ANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999 99999988532 111111111 1235778999998862 23
Q ss_pred CCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||++|....... ..+....++.|+.++..+++++.. .+. ++|++||.....
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 146 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM--------------- 146 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------
Confidence 68999999996533221 223345688999999988887653 334 899999965311
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEecCCce
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID----DGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
.+......|+.+|...|.+++.++.+. ++++..++|+.+.++..... ........+.....+.+
T Consensus 147 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p--------- 217 (263)
T PRK08226 147 VADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP--------- 217 (263)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC---------
Confidence 112233569999999999998888654 79999999999988642100 00001112222222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|+|+++..++.... .| .+.+.++
T Consensus 218 ~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 218 LRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred CCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 1124688999999998886432 44 4444444
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=139.50 Aligned_cols=206 Identities=12% Similarity=0.085 Sum_probs=136.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
+.+++|+||||+|.||.++++.|.++| ++|+++.|+.....+....... ..++.++.+|+.|.. +.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356899999999999999999999999 9999999853221111111111 235778999999863 23
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHH----HHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~----l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|++||++|...... ..++....++.|+.+... ++..+++.+. +||++||...+.
T Consensus 85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~--------------- 149 (334)
T PRK07109 85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR--------------- 149 (334)
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc---------------
Confidence 6999999998643221 122334566777666555 5555556555 899999998764
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|...+.+.+.+..+. ++++++++|+.+.+|.. .. ........ .....
T Consensus 150 -~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~--------~~-~~~~~~~~-------~~~~~ 212 (334)
T PRK07109 150 -SIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF--------DW-ARSRLPVE-------PQPVP 212 (334)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh--------hh-hhhhcccc-------ccCCC
Confidence 22234679999999998888776542 58999999998876531 11 11111110 00112
Q ss_pred eeeehHHHHHHHHHHHhcCCCcceEec
Q 019309 240 SFCYVSDMVDGLIRLMEGENTGPVNIG 266 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~~~~~~~~ 266 (343)
.++.++|+|++++.+++++. ..++++
T Consensus 213 ~~~~pe~vA~~i~~~~~~~~-~~~~vg 238 (334)
T PRK07109 213 PIYQPEVVADAILYAAEHPR-RELWVG 238 (334)
T ss_pred CCCCHHHHHHHHHHHHhCCC-cEEEeC
Confidence 35788999999999998763 334444
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=141.13 Aligned_cols=216 Identities=13% Similarity=0.043 Sum_probs=137.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+++|+||||+|+||.+++++|+++| ++|+++.|+.....+.... + .++.++.+|+.|.. ..+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~-l--~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAG-AHVIVPARRPDVAREALAG-I--DGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH-h--hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999 9999999853221111111 1 24788999999863 236
Q ss_pred CCEEEEecCCCCccc--cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+|+|||+||...... ........+.+|+.++..+.. .+++.+. ++|++||....... ...+......+.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~ 175 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGY 175 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCC
Confidence 999999999653211 223446678899888655555 4555554 99999997543211 111110001233
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.+...|+.+|...+.+.+.+..+ .|+++.+++||.+.++........ .............++ . ..+..+
T Consensus 176 ~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~-~-----~~~~~~ 247 (315)
T PRK06196 176 DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPRE--EQVALGWVDEHGNPI-D-----PGFKTP 247 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChh--hhhhhhhhhhhhhhh-h-----hhcCCH
Confidence 34567999999999988887654 479999999999998853211100 000000000000000 0 024567
Q ss_pred HHHHHHHHHHHhcC
Q 019309 245 SDMVDGLIRLMEGE 258 (343)
Q Consensus 245 ~D~a~~i~~~~~~~ 258 (343)
+|+|..++.++..+
T Consensus 248 ~~~a~~~~~l~~~~ 261 (315)
T PRK06196 248 AQGAATQVWAATSP 261 (315)
T ss_pred hHHHHHHHHHhcCC
Confidence 99999999999754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=134.55 Aligned_cols=220 Identities=14% Similarity=0.070 Sum_probs=142.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc-----------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL-----------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~-----------~ 93 (343)
+.++++|||||+|.||.++++.|.++| ++|++++|+.....+....+.. ..++.++.+|+.++.. .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999 9999999853221111111111 2468889999998731 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|++||++|...... ..++....++.|+.+...+.. .+++.+. ++|++||...+.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~--------------- 149 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE--------------- 149 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC---------------
Confidence 5999999998643221 223455677888776665554 4445554 899999987642
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC-------ccHHHHHHHHHHcCCCeEEecC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD-------GRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+...... ............. .++
T Consensus 150 -~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p---- 222 (263)
T PRK08339 150 -PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAK--PIP---- 222 (263)
T ss_pred -CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhc--cCC----
Confidence 22233569999999999888887664 799999999988665310000 0000011111111 111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCccC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGEFT 272 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~s 272 (343)
...+..++|+|+++..++.... .| .+.+.++...|
T Consensus 223 ---~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ---LGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ---cccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcccc
Confidence 1235678999999999987543 44 55655554443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-16 Score=132.50 Aligned_cols=211 Identities=17% Similarity=0.095 Sum_probs=135.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+++|+||||+|+||.+++++|.++| ++|++++|+.... +.....+ ...++.+|+.+... .+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~~~~~-~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDIDPEAG-KAAADEV---GGLFVPTDVTDEDAVNALFDTAAETYGS 79 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHc---CCcEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 9999998853221 1111111 23578899987632 25
Q ss_pred CCEEEEecCCCCccc------cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCc-ccCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE-VYGDPLIHPQPETYWG 162 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~-v~~~~~~~~~~e~~~~ 162 (343)
+|+|||++|...... ........++.|+.++..+++.+. +.+. ++|++||.. +++.
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~------------ 147 (255)
T PRK06057 80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS------------ 147 (255)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC------------
Confidence 899999998653211 112345677889888877666653 3444 899998854 4431
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
..+...|+.+|...+.+.+.+..+ .|+++.+++|+.+.++............. ..... .++ ..
T Consensus 148 ----~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~--~~~-------~~ 213 (255)
T PRK06057 148 ----ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERA-ARRLV--HVP-------MG 213 (255)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHH-HHHHh--cCC-------CC
Confidence 122356999998887777765443 37999999999998875221100000000 00000 111 12
Q ss_pred eeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.+.+++|+++++..++.... .| .+.+.++
T Consensus 214 ~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 214 RFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 47889999999998886533 33 4455443
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=134.86 Aligned_cols=202 Identities=15% Similarity=0.092 Sum_probs=133.7
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcc------------cCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~------------~~~ 94 (343)
+|+||||+|+||.++++.|.++| ++|++++|......+.+...+. ...+..+.+|+.+.. ..+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999999999999 9999999852222222221111 123445788998763 236
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHH----HHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVI----GTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~----~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||++|....... ..+....++.|+. .+..++.++++.+. +||++||...+..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~--------------- 144 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA--------------- 144 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC---------------
Confidence 8999999986543211 2233456778887 77778888887766 8999999877642
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccH-HHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRV-VSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|...+.+++.++.+. ++++..++|+.+.++......... .........++. + ..
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~-------~~ 214 (251)
T PRK07069 145 -EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV--P-------LG 214 (251)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC--C-------CC
Confidence 2233569999999999998887653 378899999999887532100000 001111111111 1 11
Q ss_pred eeeehHHHHHHHHHHHhcC
Q 019309 240 SFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~ 258 (343)
.+.+++|++++++.++...
T Consensus 215 ~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 215 RLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 3467899999999987654
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=131.98 Aligned_cols=209 Identities=15% Similarity=0.082 Sum_probs=137.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
|++|||||+|+||.++++.|+++| ++|+++.|......+...... ...++.++.+|+.++. ...+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG-YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999 899888873211111111111 1246889999999863 2358
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHH----HHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNML----GLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~----~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|...... ...++...+..|+.++..++ ..+++.+. ++|++||..... .
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~----------------~ 143 (242)
T TIGR01829 80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK----------------G 143 (242)
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------C
Confidence 99999998653221 22344556788988877754 44455666 899999975431 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+++.++.+ .++++..++|+.+.++.... .....+.......++ ..+..
T Consensus 144 ~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~~---------~~~~~ 210 (242)
T TIGR01829 144 QFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA----MREDVLNSIVAQIPV---------GRLGR 210 (242)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc----cchHHHHHHHhcCCC---------CCCcC
Confidence 122356999999999888777654 48999999999998875321 112222222222111 12445
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+|+++++..++..+. +..+.+.++
T Consensus 211 ~~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 6899999988876543 335666554
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=133.50 Aligned_cols=191 Identities=14% Similarity=0.083 Sum_probs=135.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc---------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL---------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~d~vi~ 100 (343)
++++||||+|+||.++++.|.++| ++|++++|+... .+.+... ..++.++.+|+.+... ..+|.++|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G-~~V~~~~r~~~~-~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG-WQVIACGRNQSV-LDELHTQ--SANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEECCHHH-HHHHHHh--cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 679999999999999999999999 999999985321 1111111 2367889999988732 24799999
Q ss_pred ecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCch
Q 019309 101 LACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 101 ~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y 173 (343)
++|...... ...+....++.|+.++.++++++... +.++|++||..... +......|
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~Y 141 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL----------------ALPRAEAY 141 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc----------------CCCCCchh
Confidence 998542111 12233567899999999999998753 44899999865321 12233579
Q ss_pred HHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 174 DEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
+.+|...+.+.+.+.. ..|++++++||+.++++..... ... .+ ..+..+|+++.
T Consensus 142 ~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~----------------~~~---~~----~~~~~~~~a~~ 198 (240)
T PRK06101 142 GASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN----------------TFA---MP----MIITVEQASQE 198 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC----------------CCC---CC----cccCHHHHHHH
Confidence 9999999999888764 4589999999999998752210 000 00 14678999999
Q ss_pred HHHHHhcCCCcce
Q 019309 251 LIRLMEGENTGPV 263 (343)
Q Consensus 251 i~~~~~~~~~~~~ 263 (343)
++..++.....++
T Consensus 199 i~~~i~~~~~~~~ 211 (240)
T PRK06101 199 IRAQLARGKSHIY 211 (240)
T ss_pred HHHHHhcCCCEEE
Confidence 9999997544333
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-16 Score=132.13 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=139.6
Q ss_pred CCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCC--------Cccc--hhhhcC--CCceEEEEcccCCccc-
Q 019309 28 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTG--------SKDN--LKKWIG--HPRFELIRHDVTEPLL- 92 (343)
Q Consensus 28 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~--~~~~~~--~~~~~~~~~d~~~~~~- 92 (343)
++++||||||+| .||.++++.|.++| ++|++++|+... .... +...+. ..++.++.+|+.+...
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 568999999996 69999999999999 899999885210 0000 111111 1358889999988632
Q ss_pred -----------CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCC
Q 019309 93 -----------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPL 152 (343)
Q Consensus 93 -----------~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~ 152 (343)
..+|+|||+||....... ..+....+..|+.++..+++++... +. ++|++||...++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--- 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC---
Confidence 368999999986432221 2334566889999999999888542 33 899999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
+......|+.+|.+.|.+++.++.+ .++++..++|+.+..+... ...........
T Consensus 160 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~-------~~~~~~~~~~~-- 217 (256)
T PRK12748 160 -------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT-------EELKHHLVPKF-- 217 (256)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC-------hhHHHhhhccC--
Confidence 2223457999999999998887665 4799999999987665311 11111111110
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.. ..+...+|+++++..++.... .| .+++.++
T Consensus 218 ----~~---~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 218 ----PQ---GRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred ----CC---CCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 00 113456999999998887533 34 5566544
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=132.74 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=134.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++++|+||||+|+||.++++.|.+.| ++|++++|................++.++.+|+.++. ..++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999999999999 9999999854222111111112236788999999763 2247
Q ss_pred CEEEEecCCCCcc--ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 96 d~vi~~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
|.+||+++..... ...++....++.|+.+...+++.+.+. +.++|++||..... .+..+.
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------~~~~~~ 147 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY---------------KASPDQ 147 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc---------------cCCCCc
Confidence 9999999754311 111333456788888877777776543 34899999875421 122234
Q ss_pred CchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 171 SCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
..|+.+|...+..++.+..+. +++++++||++++++... . ..... .. + .....+..+|+
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~----~---~~~~~------~~---~--~~~~~~~~~~v 209 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEP----E---RNWKK------LR---K--LGDDMAPPEDF 209 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCc----h---hhhhh------hc---c--ccCCCCCHHHH
Confidence 569999999998888877653 899999999999987421 0 00010 00 0 00125677999
Q ss_pred HHHHHHHHhcCC
Q 019309 248 VDGLIRLMEGEN 259 (343)
Q Consensus 248 a~~i~~~~~~~~ 259 (343)
++++..++..+.
T Consensus 210 a~~~~~~~~~~~ 221 (238)
T PRK05786 210 AKVIIWLLTDEA 221 (238)
T ss_pred HHHHHHHhcccc
Confidence 999999997533
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=132.73 Aligned_cols=196 Identities=17% Similarity=0.048 Sum_probs=134.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-------------cCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-------------LIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~d 96 (343)
|++|||||+|+||.+++++|+++| ++|++++|+..... .+.......++.++.+|+.+.. ..++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLA-ALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHH-HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 679999999999999999999999 99999988543211 1112222346889999999752 23579
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+||||||...... ...+....+..|+.++..+++++. +.+. ++|++||...+.. .
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~----------------~ 143 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYG----------------Q 143 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcC----------------C
Confidence 9999999654322 223456778999999999988874 3333 8999999754321 1
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.....|+.+|...+.+.+.++.+ .++++.+++|+.+..+...... ......... ...-.+..
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~----~~~~~~~~~-----------~~~~~~~~ 208 (260)
T PRK08267 144 PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS----NEVDAGSTK-----------RLGVRLTP 208 (260)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccccc----chhhhhhHh-----------hccCCCCH
Confidence 12356999999999988888754 4799999999988765321100 000000000 00113566
Q ss_pred HHHHHHHHHHHhcC
Q 019309 245 SDMVDGLIRLMEGE 258 (343)
Q Consensus 245 ~D~a~~i~~~~~~~ 258 (343)
+|++++++.+++..
T Consensus 209 ~~va~~~~~~~~~~ 222 (260)
T PRK08267 209 EDVAEAVWAAVQHP 222 (260)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999754
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-16 Score=132.51 Aligned_cols=218 Identities=13% Similarity=0.015 Sum_probs=142.7
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc-----------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~----------- 92 (343)
+.+.+++++||||+|.||.+++++|+++| ++|+++.|......+....... ..++.++.+|+.+...
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999 9999888753222111111111 1358889999998632
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..+|+|||++|...... ..++....++.|+.++..+..++. +.+. ++|++||.....
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL------------- 151 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC-------------
Confidence 35899999999754322 223445667889888887766654 3444 899999964321
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCc----cHHHHHHHHHHcCCCeEEecCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDG----RVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+..+...|+.+|...+.+++.++.+. |+++..++||.+.++....... .....+........+
T Consensus 152 ---~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 221 (265)
T PRK07097 152 ---GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP------- 221 (265)
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC-------
Confidence 12234679999999999999988764 8999999999998874321000 000001111111110
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+...+|+|.+++.++.... .| .+.+.++
T Consensus 222 --~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 222 --AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred --ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 1125667999999999998643 33 4455444
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=131.85 Aligned_cols=212 Identities=17% Similarity=0.080 Sum_probs=141.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
+.++++|||||+|.||.++++.|.++| ++|+++.|+.... +.....+. ..++..+.+|+.++. .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDAL-EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHH-HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 9999998854221 11211111 235778899998863 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..+|++|||+|...... ..++....++.|+.++..+++++. +.+ .++|++||....-.
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 152 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII------------ 152 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC------------
Confidence 36999999998654221 122345567899999888888774 232 37999988754210
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
........|+.+|...+.+.+.++.+ .|+++..++||.+-.+.... . .......... .+ ..
T Consensus 153 --~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~----~-~~~~~~~~~~--~~-------~~ 216 (253)
T PRK05867 153 --NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP----Y-TEYQPLWEPK--IP-------LG 216 (253)
T ss_pred --CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc----c-hHHHHHHHhc--CC-------CC
Confidence 01112256999999999999988765 38999999999987764211 1 1111111111 11 11
Q ss_pred eeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.+..++|+|++++.++.... .| .+.+.++
T Consensus 217 r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 217 RLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred CCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 25678999999999997543 33 5555554
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=131.79 Aligned_cols=212 Identities=12% Similarity=0.069 Sum_probs=140.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------cCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~~~ 94 (343)
+|+++||||+|.||.++++.|.++| +.|++++|+..... .....+. ...+.++.+|+.++. +..
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLE-EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999 89999988542211 1111111 246888999998762 236
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||++|..... ...+++...++.|+.++.++++++.+ .+ .++|++||...+.
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------------- 143 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD--------------- 143 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc---------------
Confidence 89999999853321 12233466889999999999988843 22 2799999885432
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ +|+++..++||.+.++...... .......+.+.+... ...
T Consensus 144 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~ 212 (252)
T PRK07677 144 -AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WESEEAAKRTIQSVP---------LGR 212 (252)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc-cCCHHHHHHHhccCC---------CCC
Confidence 2222356999999999988887665 3799999999998754311000 000122222222111 112
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+...+|+++++..++.... .| .+.+.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 213 LGTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred CCCHHHHHHHHHHHcCccccccCCCEEEECCC
Confidence 5677999999999887542 33 4555544
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=132.36 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=133.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc-------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------- 91 (343)
+.+++++||||+|+||.++++.|+++| ++|++++|+..........+. ....+.++.+|+.+..
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence 356899999999999999999999999 999999986532211111111 1224567778876421
Q ss_pred -c-CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 92 -L-IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 -~-~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
+ .++|+|||+||..... ....+....++.|+.++..+++++. +.+. ++|++||....
T Consensus 83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~----------- 151 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE----------- 151 (239)
T ss_pred HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc-----------
Confidence 1 3689999999864211 1123344578899999888877764 3344 89999986432
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+......|+.+|...+.+++.++.+. ++++..++||.+.+|..... ..+
T Consensus 152 -----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~------------~~~--------- 205 (239)
T PRK08703 152 -----TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS------------HPG--------- 205 (239)
T ss_pred -----cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc------------CCC---------
Confidence 122233569999999999998888764 58999999999998752110 001
Q ss_pred ceeEeeeehHHHHHHHHHHHhcC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.........+|++.++..++...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ 228 (239)
T PRK08703 206 EAKSERKSYGDVLPAFVWWASAE 228 (239)
T ss_pred CCccccCCHHHHHHHHHHHhCcc
Confidence 01112467899999999999743
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=132.90 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=134.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc---------CCCCE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL---------IEVDQ 97 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~---------~~~d~ 97 (343)
+|+|+||||+|+||.++++.|+++| ++|++++|............. ...++.++.+|+.+... ..+|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 3689999999999999999999999 999999986432221111111 12478899999998632 24799
Q ss_pred EEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 98 vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+||++|...... ..++....++.|+.++..+++++.. .+. ++|++||..... +..
T Consensus 80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 143 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR----------------GRA 143 (243)
T ss_pred EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC----------------CCC
Confidence 999998653221 2223346678999999988887653 344 899999975431 112
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...+.+.+.+..+ .|+++..++|+.+.++... +... . ..-...++
T Consensus 144 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~----------------~~~~----~---~~~~~~~~ 200 (243)
T PRK07102 144 SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTA----------------GLKL----P---GPLTAQPE 200 (243)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhh----------------ccCC----C---ccccCCHH
Confidence 2356999999999988887653 4799999999999876310 0000 0 01246789
Q ss_pred HHHHHHHHHHhcC
Q 019309 246 DMVDGLIRLMEGE 258 (343)
Q Consensus 246 D~a~~i~~~~~~~ 258 (343)
|+++.++.+++++
T Consensus 201 ~~a~~i~~~~~~~ 213 (243)
T PRK07102 201 EVAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999864
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-16 Score=131.95 Aligned_cols=214 Identities=17% Similarity=0.084 Sum_probs=142.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+++|+||||+|+||.+++++|.++| ++|+++.|+............. ..++.++.+|+.+.. ...
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 56899999999999999999999999 9999999854322111111111 235888999998762 125
Q ss_pred CCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||++|...... ..+++...++.|+.++..+++++ .+.+. ++|++||...+.
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~--------------- 149 (253)
T PRK06172 85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG--------------- 149 (253)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc---------------
Confidence 799999998643211 22344567789999887766544 34444 899999987664
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+++.++.+. ++++..+.||.+-.+........ ........... .+ ...+
T Consensus 150 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~--~~-------~~~~ 218 (253)
T PRK06172 150 -AAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA-DPRKAEFAAAM--HP-------VGRI 218 (253)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc-ChHHHHHHhcc--CC-------CCCc
Confidence 22334679999999999999888764 69999999998866542110000 01111111111 11 1135
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..++|+++.++.++.... .| .+.+.++
T Consensus 219 ~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 219 GKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred cCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 678999999999997543 44 4555554
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-16 Score=135.17 Aligned_cols=207 Identities=16% Similarity=0.104 Sum_probs=139.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.++++|||||+|.||.++++.|.++| ++|++++|+.....+..........+..+.+|+.|.. ...+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG-AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999 9999999853221111111111234556679998862 2368
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|+|||+||...... ..++....++.|+.++..+++++.. .+.++|++||...+. +.
T Consensus 87 d~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 150 (296)
T PRK05872 87 DVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA----------------AA 150 (296)
T ss_pred CEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC----------------CC
Confidence 99999999654221 1223456788999999999888753 233899999987663 22
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.....|+.+|...+.+.+.+..+ .|+.+.++.|+++..+........ ...........+.+ ...+..+
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~--~~~~~~~~~~~~~p-------~~~~~~~ 221 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD--LPAFRELRARLPWP-------LRRTTSV 221 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc--chhHHHHHhhCCCc-------ccCCCCH
Confidence 23457999999999988887643 589999999998876642111000 01111111111111 1235788
Q ss_pred HHHHHHHHHHHhcCCC
Q 019309 245 SDMVDGLIRLMEGENT 260 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~~ 260 (343)
+|++++++.++.+...
T Consensus 222 ~~va~~i~~~~~~~~~ 237 (296)
T PRK05872 222 EKCAAAFVDGIERRAR 237 (296)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999987543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=128.76 Aligned_cols=205 Identities=16% Similarity=0.091 Sum_probs=136.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
|+|++|||||+|.||+++++.|.++| ++|++++|+.....+.+ ...++.++.+|+.+... .++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQG-QPVIVSYRTHYPAIDGL----RQAGAQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchhHHHHH----HHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 56899999999999999999999999 99999998543221111 12347788999987632 259
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC---CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
|++||+||...... ..++....++.|+.++..+...+. +.+ .++|++||.....
T Consensus 76 d~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~--------------- 140 (236)
T PRK06483 76 RAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK--------------- 140 (236)
T ss_pred cEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc---------------
Confidence 99999998643221 233455677888888876655554 333 3899999875431
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...|.+++.++.+. ++++..++|+.+..+.. .. ...........++. -+.
T Consensus 141 -~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~---~~---~~~~~~~~~~~~~~---------~~~ 204 (236)
T PRK06483 141 -GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEG---DD---AAYRQKALAKSLLK---------IEP 204 (236)
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCC---CC---HHHHHHHhccCccc---------cCC
Confidence 22233569999999999999998875 48999999998743221 11 11111122211111 134
Q ss_pred ehHHHHHHHHHHHhcCC-Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN-TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~-~~-~~~~~~~ 268 (343)
..+|+++++..++...- .| .+.+.++
T Consensus 205 ~~~~va~~~~~l~~~~~~~G~~i~vdgg 232 (236)
T PRK06483 205 GEEEIIDLVDYLLTSCYVTGRSLPVDGG 232 (236)
T ss_pred CHHHHHHHHHHHhcCCCcCCcEEEeCcc
Confidence 67999999999997433 33 5555544
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=130.48 Aligned_cols=204 Identities=12% Similarity=0.050 Sum_probs=138.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------c
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 92 (343)
.+.+++++||||+|.||.+++++|.+.| ++|+++++... .+....... ...+..+.+|+.+.. .
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999999 99988876421 111111111 235778899998752 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++|||||...... ...+....++.|+.++..+++++.. .+ .++|++||...+..
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 151 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG------------ 151 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC------------
Confidence 36999999998653221 2245667889999999988887643 23 38999999877642
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|.+.|.+.+.++.+ .|+++..++||.+-.+........ ......... .++. .
T Consensus 152 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~--~~~~~~~~~--~~p~-------~ 216 (253)
T PRK08993 152 ----GIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRAD--EQRSAEILD--RIPA-------G 216 (253)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccc--hHHHHHHHh--cCCC-------C
Confidence 112246999999999998888765 489999999999977642110000 011111111 1111 1
Q ss_pred eeeehHHHHHHHHHHHhcCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~ 259 (343)
-+...+|+|++++.++....
T Consensus 217 r~~~p~eva~~~~~l~s~~~ 236 (253)
T PRK08993 217 RWGLPSDLMGPVVFLASSAS 236 (253)
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 25677999999999997643
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=130.33 Aligned_cols=205 Identities=17% Similarity=0.128 Sum_probs=138.9
Q ss_pred ccCCCEEEEEcCch-hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc----------
Q 019309 26 FQSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 26 ~~~~~~ilItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~---------- 91 (343)
.+.+++++||||+| -||.++++.|.++| ++|++++|............ ....++.++.+|+.++.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 34679999999998 59999999999999 89999887543222211111 12236788999998762
Q ss_pred --cCCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
...+|+||||+|....... ..+....++.|+.++..+++++.. .+ .++|++||...+.
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~---------- 162 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR---------- 162 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC----------
Confidence 2368999999986432111 234456678899998887776643 33 3788888865431
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+++.++.+ +|+++..++|+.+..+...... ............+ +
T Consensus 163 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---~~~~~~~~~~~~~--~----- 226 (262)
T PRK07831 163 ------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---SAELLDELAAREA--F----- 226 (262)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---CHHHHHHHHhcCC--C-----
Confidence 2233457999999999999998876 4799999999999887532110 1122222222211 1
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
..+..++|+|++++.++....
T Consensus 227 --~r~~~p~~va~~~~~l~s~~~ 247 (262)
T PRK07831 227 --GRAAEPWEVANVIAFLASDYS 247 (262)
T ss_pred --CCCcCHHHHHHHHHHHcCchh
Confidence 125667999999999997643
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=129.17 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=134.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
..+++++||||+|.||.++++.|.++| +.|+++.|............+. ..++.++.+|+.+...
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G-~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK-AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999 8888887743222221221111 2357788999998632
Q ss_pred CCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHH----HHHHHHHcC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLN----MLGLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~----l~~~a~~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..+|++||++|........ .+....++.|+.++.. ++..+.+.+ .++|++||...+
T Consensus 84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~-------------- 149 (261)
T PRK08936 84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ-------------- 149 (261)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc--------------
Confidence 3589999999865432222 2334567888776654 455556554 389999997543
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
.+..+...|+.+|.+.+.+.+.++.+. |+++..++|+.+.++........ .......... .+ ..
T Consensus 150 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~--~~-------~~ 216 (261)
T PRK08936 150 --IPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD--PKQRADVESM--IP-------MG 216 (261)
T ss_pred --CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC--HHHHHHHHhc--CC-------CC
Confidence 233445679999999888887776543 89999999999987752211000 1111111111 11 11
Q ss_pred eeeehHHHHHHHHHHHhcCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~ 259 (343)
.+...+|+++++..++....
T Consensus 217 ~~~~~~~va~~~~~l~s~~~ 236 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSEA 236 (261)
T ss_pred CCcCHHHHHHHHHHHcCccc
Confidence 35667999999999987543
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=133.84 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=142.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 92 (343)
+++|+|+|+||+|+||.++++.|.++| ++ |++++|.............. ...+.++.+|+.++..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G-~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERG-AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999 77 99888853221111111111 2357788999987631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||++|...... ........++.|+.++.++++++.+ .+ .++|++||...++.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~------------ 150 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG------------ 150 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC------------
Confidence 36899999998653221 1223345688999999998887743 22 27999999877642
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCc---cHHHHHHHHHHcCCCeEEecCCc
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDG---RVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
......|+.+|...|.+++.++.+. ++++..++|++++++....... .....++.......
T Consensus 151 ----~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (260)
T PRK06198 151 ----QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ--------- 217 (260)
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC---------
Confidence 1123569999999999999887654 5899999999998875211000 00111222211111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
....+++++|+++++..++.... .| .+.+.++
T Consensus 218 ~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 218 PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred CccCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 11236789999999999986443 33 4555543
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=133.24 Aligned_cols=213 Identities=18% Similarity=0.085 Sum_probs=136.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~d 96 (343)
++++||||+|+||.++++.|++.| ++|+++.|+.....+....+.. ..++.++.+|+.++.. ..+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 579999999999999999999999 8999998853211111111111 2357889999988632 2589
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|||++|...... ...+....++.|+.++..++.++. +.+ .++|++||..... +
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 143 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE----------------G 143 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC----------------C
Confidence 9999998653211 123345678899988877766554 333 3899999975532 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe------cCCce
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ------KPGTQ 237 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 237 (343)
......|+.+|...|.+++.+..+. ++++.+++|+.+..+... .+...........+. .....
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (254)
T TIGR02415 144 NPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE--------EIDEETSEIAGKPIGEGFEEFSSEIA 215 (254)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh--------hhhhhhhhcccCchHHHHHHHHhhCC
Confidence 1234679999999999998877653 799999999988655311 110000000000000 00000
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---CcceEecC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TGPVNIGN 267 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~ 267 (343)
...+.+++|+++++..+++... .|.+....
T Consensus 216 ~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d 248 (254)
T TIGR02415 216 LGRPSEPEDVAGLVSFLASEDSDYITGQSILVD 248 (254)
T ss_pred CCCCCCHHHHHHHHHhhcccccCCccCcEEEec
Confidence 1136788999999999998755 45554443
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=138.03 Aligned_cols=176 Identities=15% Similarity=0.038 Sum_probs=120.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------~ 92 (343)
.+|+|+||||+|+||.++++.|.++| ++|+++.|+.....+....+. ....+.++.+|+.+.. .
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKG-AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 67899999999999999999999999 999999885432221111111 1246788999999863 2
Q ss_pred CCCCEEEEecCCCCccc--cccChHHHHHHHHHH----HHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~--~~~~~~~~~~~nv~~----~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|+|||+||...... ..++....++.|+.+ +..++..+++.+. ++|++||...+.... .+.++.. ...
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~--~~~ 170 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQ--WER 170 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccC--ccc
Confidence 25999999998654321 223446678899888 6667777776655 999999987543111 1111111 012
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEE--EeccccCCC
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIA--RIFNTYGPR 207 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~--R~~~v~G~~ 207 (343)
+..+...|+.+|...+.+.+.++.+. ++++.++ .||.|..+.
T Consensus 171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 33455689999999999998887764 5555544 698887654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=131.36 Aligned_cols=214 Identities=13% Similarity=0.068 Sum_probs=135.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~------------ 91 (343)
+++|++|||||++.||.++++.|.++| ++|+++.|......+.....+. ..++.++.+|++|+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG-VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 9998876532221111111111 236788999999863
Q ss_pred cCCCCEEEEecCCCCc-------ccc---ccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP-------IFY---KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~-------~~~---~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~ 156 (343)
..++|++||+||.... ... ..+....++.|+.+...+... +++.+. ++|++||...+.
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 157 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV------- 157 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc-------
Confidence 2368999999985421 011 123344566777665554443 444444 899999975431
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+......|+.+|...+.+++.++.++ |+++..+.||.+-.+..... .. ............ +
T Consensus 158 ---------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~-~~-~~~~~~~~~~~~--~--- 221 (260)
T PRK08416 158 ---------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAF-TN-YEEVKAKTEELS--P--- 221 (260)
T ss_pred ---------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhc-cC-CHHHHHHHHhcC--C---
Confidence 11223469999999999999988764 79999999988765431100 00 011111111111 1
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|++++++.++.... .| .+.+.++
T Consensus 222 ----~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 222 ----LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred ----CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 1125678999999999997543 44 4455443
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=133.55 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=140.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
+++++|||||+|+||.+++++|+++| +.|++++|.............. ..++.++.+|++++. ..+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999 9999999854321111111111 235678899998763 235
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|++||+||...... ..++....++.|+.++.+++.++.. .+.++|++||...+. +
T Consensus 87 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------------~ 150 (264)
T PRK07576 87 IDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------------P 150 (264)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------------C
Confidence 899999997532211 2234456788999999999888754 334899999976542 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHH-HHHHHHHcCCCeEEecCCceeEeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVS-NFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
......|+.+|...|.+++.+..+ .++++..++|+.+.+.... ..... ......... ..+ ...+.
T Consensus 151 ~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~---~~~~~~~~~~~~~~~-~~~-------~~~~~ 219 (264)
T PRK07576 151 MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGM---ARLAPSPELQAAVAQ-SVP-------LKRNG 219 (264)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHH---hhcccCHHHHHHHHh-cCC-------CCCCC
Confidence 223457999999999999988765 3789999999988753210 00000 001111111 111 12356
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...|+|++++.++.... .| .+.+.++
T Consensus 220 ~~~dva~~~~~l~~~~~~~~~G~~~~~~gg 249 (264)
T PRK07576 220 TKQDIANAALFLASDMASYITGVVLPVDGG 249 (264)
T ss_pred CHHHHHHHHHHHcChhhcCccCCEEEECCC
Confidence 78999999999997543 44 4455544
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=125.60 Aligned_cols=275 Identities=15% Similarity=0.062 Sum_probs=185.4
Q ss_pred CCCEEEEEcCchhHHHHHHH-----HHHhcC---CCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVD-----KLMENE---KNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~-----~L~~~g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
+..+.++-+++|+|+..|.. ++-+.+ .|+|++++|..... ++.+-+.|.... -..|++.+
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------ritw~el~~~Gi-p~sc~a~v 78 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------RITWPELDFPGI-PISCVAGV 78 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------ccccchhcCCCC-ceehHHHH
Confidence 44577888999999988876 332222 28899999954322 222222221111 11466777
Q ss_pred EecCCCCc----cccccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 100 HLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 100 ~~a~~~~~----~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
+++|.... .+.+....+.....++.+..++++..+... .+|.+|..++|-......++|+ .+....+.
T Consensus 79 na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~-----~~~qgfd~ 153 (315)
T KOG3019|consen 79 NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK-----IVHQGFDI 153 (315)
T ss_pred hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc-----cccCChHH
Confidence 66653321 112222334555567778889999888765 4999999999988888888888 57776666
Q ss_pred hHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHH--HHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIA--QALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
.......-|.......+ ..+.+++|.|.|.|.+. ..+..++- ++..|+++ +++.+.+.|||++|++..
T Consensus 154 ~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gG-----Ga~~~M~lpF~~g~GGPl---GsG~Q~fpWIHv~DL~~l 223 (315)
T KOG3019|consen 154 LSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGG-----GALAMMILPFQMGAGGPL---GSGQQWFPWIHVDDLVNL 223 (315)
T ss_pred HHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCC-----cchhhhhhhhhhccCCcC---CCCCeeeeeeehHHHHHH
Confidence 66655566666555433 48999999999999872 23333222 33345544 688999999999999999
Q ss_pred HHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC---CCCCC--cccc-----ChHHHHHhcCCccc
Q 019309 251 LIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT---PDDPR--QRKP-----DISKAKELLGWEPK 319 (343)
Q Consensus 251 i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---~~~~~--~~~~-----~~~~~~~~lg~~p~ 319 (343)
|..+++++. .|+.|-..+++++..|+.+.+..+++++..+...+.. .+.+. ..++ -..|+. ++||+.+
T Consensus 224 i~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral-~~Gf~f~ 302 (315)
T KOG3019|consen 224 IYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRAL-ELGFEFK 302 (315)
T ss_pred HHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhHh-hcCceee
Confidence 999999977 9999999999999999999999999988776543321 11111 1122 234444 4899888
Q ss_pred c-cHHhHHHHHH
Q 019309 320 V-KLRDGLPLME 330 (343)
Q Consensus 320 ~-~~~e~l~~~~ 330 (343)
+ .+.++++++.
T Consensus 303 yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 303 YPYVKDALRAIM 314 (315)
T ss_pred chHHHHHHHHHh
Confidence 8 4678877654
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-16 Score=132.19 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=137.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----------cCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----------LIEV 95 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 95 (343)
+.+++++||||+|+||.+++++|+++| ++|++++|+.....+.........++.++.+|+.|+. ...+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 357899999999999999999999999 9999999853222111111111246888999999863 2358
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||+||...... ...+....++.|+.++..+++.+.+ .+. ++|++||...+. +
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 145 (263)
T PRK09072 82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI----------------G 145 (263)
T ss_pred CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------------C
Confidence 99999998653221 1223356778999999988888753 333 789998865431 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+++.+..+ .++++..+.|+.+.++... .... ... .. ....+..
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~--------~~~~------~~~--~~--~~~~~~~ 207 (263)
T PRK09072 146 YPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNS--------EAVQ------ALN--RA--LGNAMDD 207 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchh--------hhcc------ccc--cc--ccCCCCC
Confidence 122356999999999888887765 3688999999877654310 0000 000 00 0113578
Q ss_pred hHHHHHHHHHHHhcCCCcc
Q 019309 244 VSDMVDGLIRLMEGENTGP 262 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~~~~ 262 (343)
++|+|++++.++++...+.
T Consensus 208 ~~~va~~i~~~~~~~~~~~ 226 (263)
T PRK09072 208 PEDVAAAVLQAIEKERAER 226 (263)
T ss_pred HHHHHHHHHHHHhCCCCEE
Confidence 8999999999999765443
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=130.85 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=134.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chh---hhc--CCCceEEEEcccCCccc------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLK---KWI--GHPRFELIRHDVTEPLL------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~---~~~--~~~~~~~~~~d~~~~~~------ 92 (343)
+.+++++||||+|+||.++++.|.++| ++|++++|....... .+. ..+ ...++.++.+|+.++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356899999999999999999999999 999999986432111 011 111 12357888999988731
Q ss_pred ------CCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEeCCcccCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~~----~~-~r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||........ ++....++.|+.++..+++++.. .+ .++|++||......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------- 155 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------- 155 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-------
Confidence 2699999999865432222 23456778999999999998863 22 38999988642210
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
....+...|+.+|.+.|.+++.++.+. ++++..+.|+.++... .......+. .
T Consensus 156 -------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~-----------~~~~~~~~~-~----- 211 (273)
T PRK08278 156 -------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA-----------AVRNLLGGD-E----- 211 (273)
T ss_pred -------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH-----------HHHhccccc-c-----
Confidence 111345679999999999999988764 7899999997432211 111111111 1
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
....+..++|+|++++.++....
T Consensus 212 --~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 212 --AMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred --cccccCCHHHHHHHHHHHhcCcc
Confidence 11235688999999999997644
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=131.35 Aligned_cols=153 Identities=21% Similarity=0.195 Sum_probs=116.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|+++||||+|+||.++++.|.++| ++|++++|..... ...++.++.+|+.++.. ..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG-ANVVNADIHGGDG--------QHENYQFVPTDVSSAEEVNHTVAEIIEKFGR 77 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcccc--------ccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999999 9999998753221 12367889999998632 35
Q ss_pred CCEEEEecCCCCcc-------------ccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCC
Q 019309 95 VDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~ 156 (343)
+|+|||+||..... ....+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 150 (266)
T PRK06171 78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE------- 150 (266)
T ss_pred CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-------
Confidence 89999999864321 12233456788999999998888764 333 799999987652
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEecccc
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTY 204 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~ 204 (343)
+......|+.+|...+.+++.++.+ .|+++.+++||.+-
T Consensus 151 ---------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 151 ---------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 2223467999999999999888765 47999999999874
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=127.11 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=140.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+++++++|||||+-||..+++.|.++| ++|+.+.|+.+.-.+...++.. .-.++++.+|+.++..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 577899999999999999999999999 9999999954332222222221 2357889999998721
Q ss_pred CCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
..+|++|||||..... ..+++..++++.|+.++..+-.+. .+.+. ++|.++|...|
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~--------------- 147 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGL--------------- 147 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhc---------------
Confidence 2699999999965432 233455678899988877765554 45555 99999999877
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.|..-...|+.+|...-.+.+.+..+ .|+.++.+.||.+...... ..+..... .....-
T Consensus 148 -~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~--------------~~~~~~~~---~~~~~~ 209 (265)
T COG0300 148 -IPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFD--------------AKGSDVYL---LSPGEL 209 (265)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccc--------------cccccccc---ccchhh
Confidence 34444567999999887766666544 4799999999877665421 01111110 011234
Q ss_pred eeehHHHHHHHHHHHhcCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~ 259 (343)
+...+|+|+..+..+++..
T Consensus 210 ~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 210 VLSPEDVAEAALKALEKGK 228 (265)
T ss_pred ccCHHHHHHHHHHHHhcCC
Confidence 6888999999999999754
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=133.69 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=137.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+++|+||||+|.||.++++.|.++| ++|+++.|+.....+....... ...+.++.+|+.|+. ...
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999 9999999854222111111111 235778899999863 236
Q ss_pred CCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||........ ++....++.|+.++..+..++ ++.+. ++|++||...+.
T Consensus 85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~---------------- 148 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA---------------- 148 (330)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC----------------
Confidence 89999999865432222 233457889999888877665 34444 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+.+.+..+ .++++..+.|+.+.++...... .. .+... .....+
T Consensus 149 ~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~-----~~-----~~~~~------~~~~~~ 212 (330)
T PRK06139 149 AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGA-----NY-----TGRRL------TPPPPV 212 (330)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccc-----cc-----ccccc------cCCCCC
Confidence 2223457999999988877777655 2689999999999887522110 00 11111 011235
Q ss_pred eehHHHHHHHHHHHhcCCC
Q 019309 242 CYVSDMVDGLIRLMEGENT 260 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~~ 260 (343)
.+++|+|++++.+++++..
T Consensus 213 ~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 213 YDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred CCHHHHHHHHHHHHhCCCC
Confidence 7899999999999987653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-15 Score=130.44 Aligned_cols=197 Identities=16% Similarity=0.067 Sum_probs=131.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc-----------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL-----------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~-----------~~ 93 (343)
..+++++||||+|+||.+++++|.++| ++|++.++......+.....+. ..++.++.+|+.+.. ..
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999 8999887743222222222111 236788999998752 23
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----c----C----CeEEEEeCCcccCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V----G----ARILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~----~----~r~i~~SS~~v~~~~~~~~~~ 157 (343)
++|+|||+||...... ...+....++.|+.++..+++++.. . + .++|++||...+.
T Consensus 89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 160 (306)
T PRK07792 89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV-------- 160 (306)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc--------
Confidence 6899999999754321 2234566788999999999887642 1 1 2899999976542
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+++.++.+ +|+++..+.|+. ... +....+. ... ...
T Consensus 161 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t~-------~~~~~~~----~~~-~~~-- 216 (306)
T PRK07792 161 --------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RTA-------MTADVFG----DAP-DVE-- 216 (306)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CCc-------hhhhhcc----ccc-hhh--
Confidence 1122356999999999998887765 478888888862 111 1011100 000 000
Q ss_pred CceeEeeeehHHHHHHHHHHHhc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
.....++.++|++.++..++..
T Consensus 217 -~~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 217 -AGGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred -hhccCCCCHHHHHHHHHHHcCc
Confidence 0112345789999999988864
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=131.19 Aligned_cols=214 Identities=16% Similarity=0.092 Sum_probs=140.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+++++||||+|+||.++++.|.++| ++|++++|+.... +.+...+ ..++.++.+|+.+.. ...
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKL-ASLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGK 80 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999 9999999853221 1122212 235778899998762 236
Q ss_pred CCEEEEecCCCCcc--c---cccC----hHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI--F---YKYN----PVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 95 ~d~vi~~a~~~~~~--~---~~~~----~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+|++||+||..... . ..++ ....++.|+.++..+++++.. .+.++|++||...+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 148 (263)
T PRK06200 81 LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------------ 148 (263)
T ss_pred CCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC------------
Confidence 99999999964311 1 1111 345677898888888777753 334899999987653
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCC----ccH---HHHHHHHHHcCCCeEEe
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDD----GRV---VSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~----~~~---~~~~~~~~~~~~~~~~~ 232 (343)
+..+...|+.+|...+.+++.++.+. ++++..+.||.+..+...... ... ........ .. ..+
T Consensus 149 ----~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~p-- 220 (263)
T PRK06200 149 ----PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMI-AA-ITP-- 220 (263)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHh-hc-CCC--
Confidence 22233569999999999999888764 489999999988765321100 000 00011111 11 111
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcC-C---Cc-ceEecCC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGE-N---TG-PVNIGNP 268 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~-~---~~-~~~~~~~ 268 (343)
..-+...+|++++++.++... . .| .+.+.++
T Consensus 221 -----~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 221 -----LQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred -----CCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 123677899999999999755 3 33 4555444
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-15 Score=127.51 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=138.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~------------ 91 (343)
+++++++||||+|.||.++++.|.++| ++|++++|+.....+....... ..++.++.+|+.|..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 9999999864322221111111 235778899999863
Q ss_pred cCCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
...+|++||+||....... ..+....++.|+.+...++..+ ++.+. ++|++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ------------- 151 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC-------------
Confidence 2358999999986432221 1234456677776666555544 44444 899999986542
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEEec
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID------DGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+......|+.+|...+.+.+.++.+ .|+++..++||.+-.+..... ....+..+.........++
T Consensus 152 ---~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (265)
T PRK07062 152 ---PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIP--- 225 (265)
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCC---
Confidence 2222356999999998888777654 479999999998876531100 0000011111111111111
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+...+|+|+++..++.... .| .+.+.++
T Consensus 226 ----~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg 260 (265)
T PRK07062 226 ----LGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGG 260 (265)
T ss_pred ----cCCCCCHHHHHHHHHHHhCchhcccccceEEEcCc
Confidence 1135677999999999987533 33 4555544
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-16 Score=149.34 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=140.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|+||||||+|+||.++++.|.++| ++|++++|+........... .....+..+.+|+++...
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 99999988532211111111 122356788999998632
Q ss_pred -CCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHH----HHHHcC--CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~----~a~~~~--~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+||||||........ .+....++.|+.+...+.. .+++.+ .++|++||...+.
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~------------ 558 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY------------ 558 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC------------
Confidence 2699999999965422222 2334566778877666554 334444 3899999976542
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEecccc-CCCCCCCCccHHHHHHHHHHcCCCe----EEec
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTY-GPRMNIDDGRVVSNFIAQALRGEPL----TVQK 233 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 233 (343)
+......|+.+|...+.+++.++.+ .|+++..++|+.|+ |.+.... .+..... ...+... ..+.
T Consensus 559 ----~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~--~~~~~~~--~~~~~~~~~~~~~~~ 630 (676)
T TIGR02632 559 ----AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG--EWREERA--AAYGIPADELEEHYA 630 (676)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc--cchhhhh--hcccCChHHHHHHHH
Confidence 2223467999999999999988776 37999999999887 3321100 0000000 0000000 0000
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.......+++++|+|+++..++.... +..+++.++..
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 11112346889999999999986433 34667766543
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=128.95 Aligned_cols=209 Identities=14% Similarity=0.075 Sum_probs=135.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCcc---------------
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPL--------------- 91 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~--------------- 91 (343)
..++||||+|+||.++++.|+++| ++|+++.|......+.+.+.+. ...+.++.+|++|..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 469999999999999999999999 9998876643222222222121 124667899999863
Q ss_pred -cCCCCEEEEecCCCCcccc----cc-----------ChHHHHHHHHHHHHHHHHHHHHcC-----------CeEEEEeC
Q 019309 92 -LIEVDQIYHLACPASPIFY----KY-----------NPVKTIKTNVIGTLNMLGLAKRVG-----------ARILLTST 144 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~----~~-----------~~~~~~~~nv~~~~~l~~~a~~~~-----------~r~i~~SS 144 (343)
..++|+||||||....... .. +....++.|+.++..+..++.... .++|.+||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 1369999999986432111 01 134668999999888887654221 15777777
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHH
Q 019309 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIA 221 (343)
Q Consensus 145 ~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~ 221 (343)
.... .+..+...|+.+|...|.+++.++.+ .|+++..++|+.+..+... . .....
T Consensus 161 ~~~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~---~---~~~~~ 218 (267)
T TIGR02685 161 AMTD----------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAM---P---FEVQE 218 (267)
T ss_pred hhcc----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcccc---c---hhHHH
Confidence 6432 13334467999999999999988766 5899999999988765311 1 11111
Q ss_pred HHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 222 QALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
..... .++ . ..+..++|++++++.++.... .| .+.+.++.
T Consensus 219 ~~~~~--~~~-----~-~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (267)
T TIGR02685 219 DYRRK--VPL-----G-QREASAEQIADVVIFLVSPKAKYITGTCIKVDGGL 262 (267)
T ss_pred HHHHh--CCC-----C-cCCCCHHHHHHHHHHHhCcccCCcccceEEECCce
Confidence 11111 111 0 124578999999999997543 34 44555443
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-15 Score=126.38 Aligned_cols=197 Identities=15% Similarity=0.053 Sum_probs=133.9
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cCCCCE
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIEVDQ 97 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~~d~ 97 (343)
|+||||+|+||.++++.|.++| ++|+++.|......+.....+ ...++.++.+|+.+.. ...+|.
T Consensus 1 vlItGas~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG-FEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 6899999999999999999999 899888774322222222111 1246889999998763 225899
Q ss_pred EEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH-----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~-----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+||++|..... ....++...++.|+.++..+++++. +.+. ++|++||...+. +.
T Consensus 80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~ 143 (239)
T TIGR01831 80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM----------------GN 143 (239)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc----------------CC
Confidence 99999864321 1334566788999999999888652 2333 899999976432 11
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.....|+.+|...+.+.+.++.+ .|+++..++|+.+.++.... . .......... .++ ..+...
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-~~~~~~~~~~--~~~-------~~~~~~ 209 (239)
T TIGR01831 144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE----V-EHDLDEALKT--VPM-------NRMGQP 209 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh----h-hHHHHHHHhc--CCC-------CCCCCH
Confidence 23356999999998888777654 48999999999988765221 1 1112222211 111 124567
Q ss_pred HHHHHHHHHHHhcCC
Q 019309 245 SDMVDGLIRLMEGEN 259 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~ 259 (343)
+|+++++..++....
T Consensus 210 ~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 210 AEVASLAGFLMSDGA 224 (239)
T ss_pred HHHHHHHHHHcCchh
Confidence 999999999998654
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=127.90 Aligned_cols=195 Identities=17% Similarity=0.114 Sum_probs=131.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCc--------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEP-------------- 90 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~-------------- 90 (343)
..+++|+||||+|+||.+++++|++.| ++|++++|+..........+. ...++.++.+|+++.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999 899999985322111111111 123567778888632
Q ss_pred ccCCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 91 LLIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 91 ~~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
....+|+|||+||..... .........++.|+.++..+++++. +.+. +||++||.....
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~----------- 157 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ----------- 157 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-----------
Confidence 123689999999864321 1123445678899999888877663 4555 899999976432
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...|.+++.+..+. ++++.+++|+.+-++... ...... +
T Consensus 158 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~------------~~~~~~------~--- 211 (247)
T PRK08945 158 -----GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRA------------SAFPGE------D--- 211 (247)
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchh------------hhcCcc------c---
Confidence 11223569999999999998887665 578888888877554210 000000 0
Q ss_pred eEeeeehHHHHHHHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+...+|+++++..++....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 212 PQKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred ccCCCCHHHHHHHHHHHhCccc
Confidence 1125677999999999886543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=129.97 Aligned_cols=156 Identities=14% Similarity=0.050 Sum_probs=115.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~d~ 97 (343)
|++|||||+|+||.++++.|.++| ++|++++|+.. ...... ..++.++.+|+.+... .++|+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~----~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG-YEVWATARKAE----DVEALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 689999999999999999999999 99999988532 222221 1357788999987521 36899
Q ss_pred EEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH---cC-CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR---VG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 98 vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~---~~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
|||+||...... ..++....++.|+.++..+++++.. .+ .++|++||...+. +...
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~ 139 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL----------------VTPF 139 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC----------------CCCC
Confidence 999998653222 2234456788999999888887743 23 3899999976532 1122
Q ss_pred CCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
...|+.+|...+.+.+.+..+ .|+++.+++|+.+.++.
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 356999999999988877654 58999999999997653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=129.47 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=132.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~d~ 97 (343)
|++|||||+|.||+++++.|.++| ++|++++|+.....+....+....++.++.+|+.++. ..++|+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 689999999999999999999999 9999998854322221222212236788999998763 236999
Q ss_pred EEEecCCCCcc---ccc---cChHHHHHHHHHHHHHHHH----HHH-HcC-CeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPI---FYK---YNPVKTIKTNVIGTLNMLG----LAK-RVG-ARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 98 vi~~a~~~~~~---~~~---~~~~~~~~~nv~~~~~l~~----~a~-~~~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|||+||..... ... .+....+..|+.++..+.. .+. +.+ .++|++||.....
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~---------------- 143 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE---------------- 143 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------------
Confidence 99999864211 111 1223345566655444333 333 223 3899999987642
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC-------ccHHHH-HHHHHHcCCCeEEecC
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD-------GRVVSN-FIAQALRGEPLTVQKP 234 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...+.+.+.++.++ |+++..+.||.+-.+...... ...... ....... ..+
T Consensus 144 ~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p---- 217 (259)
T PRK08340 144 PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLE--RTP---- 217 (259)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhc--cCC----
Confidence 23334579999999999999988764 688999999887665411000 000000 0011111 111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|+|++++.++.... .| ...+.++
T Consensus 218 ---~~r~~~p~dva~~~~fL~s~~~~~itG~~i~vdgg 252 (259)
T PRK08340 218 ---LKRTGRWEELGSLIAFLLSENAEYMLGSTIVFDGA 252 (259)
T ss_pred ---ccCCCCHHHHHHHHHHHcCcccccccCceEeecCC
Confidence 1125678999999999998543 44 4455444
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=126.66 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=127.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC----------------
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI---------------- 93 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------- 93 (343)
|+|+||||+|+||++++++|.++| ++|++++|........+.... ..++.++.+|+.+....
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG-THVISISRTENKELTKLAEQY-NSNLTFHSLDLQDVHELETNFNEILSSIQEDNV 79 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC-CEEEEEeCCchHHHHHHHhcc-CCceEEEEecCCCHHHHHHHHHHHHHhcCcccC
Confidence 689999999999999999999999 999999985422111111111 24688899999876221
Q ss_pred CCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHH----HHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNML----GLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~----~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
+.+.+||++|...+.. ...+....++.|+.+...++ ..+++.+ . +||++||...+
T Consensus 80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------------- 145 (251)
T PRK06924 80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK-------------- 145 (251)
T ss_pred CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc--------------
Confidence 1227899998643211 22333455667777655444 4444433 3 89999997654
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCC---CCccHHHHHHHHHHcCCCeEEecC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNI---DDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
.+..+...|+.+|...|.+++.++.+ .++++..++|+.+-.+.... ...... ..+....... ..
T Consensus 146 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~-----~~ 217 (251)
T PRK06924 146 --NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFITLK-----EE 217 (251)
T ss_pred --CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHHHHh-----hc
Confidence 23444567999999999999988765 36889999998776543110 000000 0011111100 00
Q ss_pred CceeEeeeehHHHHHHHHHHHhc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
-.+..++|+|+.++.++..
T Consensus 218 ----~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 218 ----GKLLSPEYVAKALRNLLET 236 (251)
T ss_pred ----CCcCCHHHHHHHHHHHHhc
Confidence 1257889999999999986
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=126.16 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=140.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc-----------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL-----------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~-----------~~~~ 95 (343)
|+|.++|||+ |+||.++++.|. +| ++|++++|......+....+.. ..++.++.+|+.|.. ...+
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 5789999998 689999999996 78 9999999854322111111111 135778999998862 1369
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCC-----CCCC---CCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPL-----IHPQ---PETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~-----~~~~---~e~~~~~~ 164 (343)
|++||+||... ...++...+++|+.++..+++++... +.++|++||........ .... +.+.....
T Consensus 78 d~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (275)
T PRK06940 78 TGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSL 154 (275)
T ss_pred CEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccc
Confidence 99999998643 23567788999999999999988653 23567777765432110 0000 00000000
Q ss_pred C---C---CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 165 N---P---IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 165 ~---~---~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
. + ..+...|+.+|...+.+.+.++.+ .|+++..+.||.+..+................+... .+
T Consensus 155 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~--~p----- 227 (275)
T PRK06940 155 PFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAK--SP----- 227 (275)
T ss_pred ccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh--CC-----
Confidence 0 0 023467999999999988887765 379999999999877642100000000111111111 11
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+...+|+|+++..++.... .| .+.+.++
T Consensus 228 --~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 228 --AGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGG 262 (275)
T ss_pred --cccCCCHHHHHHHHHHHcCcccCcccCceEEEcCC
Confidence 1126788999999999986433 34 5555544
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=124.05 Aligned_cols=202 Identities=15% Similarity=0.057 Sum_probs=137.0
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~ 92 (343)
+.+|+++||||+ +-||..++++|.++| ++|++..|+. ...+.+.+. ....+.++.+|++++. .
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQND-RMKKSLQKL-VDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecCch-HHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467999999999 799999999999999 9999988852 111122222 2245788999999862 2
Q ss_pred CCCCEEEEecCCCCc-----c---ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~-----~---~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|++||+||.... . ...++....++.|+.++..+..++... +.++|++||.....
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------ 149 (252)
T PRK06079 82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------------ 149 (252)
T ss_pred CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------------
Confidence 359999999986532 1 112234566788988888887777542 23899999875431
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...+.+.+.++.+ .|+++..+.||.|-.+....... -.......... .+.
T Consensus 150 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--~~~~~~~~~~~--~p~------- 214 (252)
T PRK06079 150 ----AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--HKDLLKESDSR--TVD------- 214 (252)
T ss_pred ----cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--hHHHHHHHHhc--Ccc-------
Confidence 2223356999999999999888865 47999999999987663211000 01122222111 111
Q ss_pred EeeeehHHHHHHHHHHHhcC
Q 019309 239 RSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~ 258 (343)
..+..++|+|+++..++...
T Consensus 215 ~r~~~pedva~~~~~l~s~~ 234 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDL 234 (252)
T ss_pred cCCCCHHHHHHHHHHHhCcc
Confidence 12677899999999999754
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=131.58 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=124.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+++++||||+|.||.++++.|.++| ++|+++.|+.....+....+. ....+.++.+|+.+...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 999999986432222222221 12368889999998632
Q ss_pred -CCCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCC-CCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDP-LIHPQPETYWGN 163 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~-~~~~~~e~~~~~ 163 (343)
..+|++||+||...... ..+.....+.+|+.+...+...+. +...|+|++||...+... ......++
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~---- 166 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE---- 166 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence 25999999999754321 234566778999998777766654 333499999998654321 11111111
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~ 207 (343)
.+..+...|+.+|...+.+.+.++.+ .|+.+..+.||.+..+.
T Consensus 167 -~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 167 -RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred -ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 23445567999999999999888753 36999999999887653
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-15 Score=126.87 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=131.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------cCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
|+++||||+|.||.++++.|.++| +.|+++.|+............ ....+.++.+|+.++. ..++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999999 999998885422111111111 1123455789998753 2358
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----Hc--CCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RV--GARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~--~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|+|||++|...... ..++....++.|+.++..+++++. +. +.++|++||...+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------------- 143 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV---------------- 143 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------
Confidence 99999998643211 223446678999999999999864 22 23899999975431
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccCCCCCCCCc---cHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYGPRMNIDDG---RVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|...+.+.+.+.. ..++++++++||.+.++....... ............. ...
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 213 (272)
T PRK07832 144 ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR----------FRG 213 (272)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh----------ccc
Confidence 122235699999988877766653 358999999999998875221000 0000000100000 011
Q ss_pred eeeehHHHHHHHHHHHhc
Q 019309 240 SFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~ 257 (343)
..+..+|+|++++.++++
T Consensus 214 ~~~~~~~vA~~~~~~~~~ 231 (272)
T PRK07832 214 HAVTPEKAAEKILAGVEK 231 (272)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 247889999999999975
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=110.85 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=138.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a~~ 104 (343)
|||.|+||||.+|+.|+++++++| |+|+++.|+..+.+ . .+++.+.+.|+.|+. +.+.|+||..-+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~----~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLA----A---RQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChHhcc----c---cccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 899999999999999999999999 99999999643322 1 157888999998874 4689999988754
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
.. .+.. .........+++..+..++ |++.++.++... ++|.....+.|..|..-|...+..+|.
T Consensus 73 ~~-----~~~~---~~~~k~~~~li~~l~~agv~RllVVGGAGSL~------id~g~rLvD~p~fP~ey~~~A~~~ae~- 137 (211)
T COG2910 73 GA-----SDND---ELHSKSIEALIEALKGAGVPRLLVVGGAGSLE------IDEGTRLVDTPDFPAEYKPEALAQAEF- 137 (211)
T ss_pred CC-----CChh---HHHHHHHHHHHHHHhhcCCeeEEEEcCccceE------EcCCceeecCCCCchhHHHHHHHHHHH-
Confidence 31 1111 2233346678888888898 999988876532 223222222566665556667766664
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
+..+..+.+++|+.+-|+..|-|+....+ ..-|+...+.+. .--+.|...|.|-+++.-++++. ++
T Consensus 138 L~~Lr~~~~l~WTfvSPaa~f~PGerTg~----------yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E~~~h~rq 205 (211)
T COG2910 138 LDSLRAEKSLDWTFVSPAAFFEPGERTGN----------YRLGGDQLLVNA--KGESRISYADYAIAVLDELEKPQHIRQ 205 (211)
T ss_pred HHHHhhccCcceEEeCcHHhcCCccccCc----------eEeccceEEEcC--CCceeeeHHHHHHHHHHHHhcccccce
Confidence 44444555799999999999999754431 122332222221 22368999999999999999887 44
Q ss_pred ceEe
Q 019309 262 PVNI 265 (343)
Q Consensus 262 ~~~~ 265 (343)
.|-+
T Consensus 206 Rftv 209 (211)
T COG2910 206 RFTV 209 (211)
T ss_pred eeee
Confidence 4443
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=122.19 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=123.6
Q ss_pred hhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCC
Q 019309 21 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEV 95 (343)
Q Consensus 21 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 95 (343)
++.+..+++++++||||+|+||+++++.|.++| ++|++++|..... ...... .....+.+|+.+.. +.++
T Consensus 6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~~~---~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i 80 (245)
T PRK12367 6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKINN---SESNDE-SPNEWIKWECGKEESLDKQLASL 80 (245)
T ss_pred hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCchhh---hhhhcc-CCCeEEEeeCCCHHHHHHhcCCC
Confidence 445555678999999999999999999999999 9999998854111 111111 12256788888763 3479
Q ss_pred CEEEEecCCCCcc-ccccChHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~a~~~--------~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++|||||..... ...++....++.|+.++..+++++... +..++..||..... +
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~ 144 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------P 144 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------C
Confidence 9999999864321 224456778899999999999877532 22344445543221 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHH-------HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHR-------QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~-------~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
. ....|+.+|...+.+. .+.. ..++.+..+.|+.+..+. . . .
T Consensus 145 ~-~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~-------------------~------~----~ 193 (245)
T PRK12367 145 A-LSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSEL-------------------N------P----I 193 (245)
T ss_pred C-CCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCccccc-------------------C------c----c
Confidence 1 2346999999986433 2222 235666666664432110 0 0 0
Q ss_pred eeeehHHHHHHHHHHHhcCCCcceE
Q 019309 240 SFCYVSDMVDGLIRLMEGENTGPVN 264 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~~~~~~ 264 (343)
..+.++|+|+.++.++++....++.
T Consensus 194 ~~~~~~~vA~~i~~~~~~~~~~~~~ 218 (245)
T PRK12367 194 GIMSADFVAKQILDQANLGLYLIIV 218 (245)
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEE
Confidence 1467899999999999876554443
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=139.89 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=144.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
..+|++|||||+|.||.++++.|.++| ++|+++.|+.... +.+..... ..+..+.+|+.|+.. ..
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRDAEGA-KKLAEALG-DEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHhC-CceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999 9999998853211 11222222 356678999998732 35
Q ss_pred CCEEEEecCCCCc--c---ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~--~---~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|++|||||.... . ....+....++.|+.++..++.++... +.++|++||...+. +
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 407 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------A 407 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------C
Confidence 8999999986421 1 122345677899999999998887653 23899999987652 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
..+...|+.+|...+.+++.++.+. |+++..++||.+.++........ -........+..+. ..+..
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~ 477 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKAS-GRADFDSIRRRIPL---------GRLGD 477 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccc-cHHHHHHHHhcCCC---------CCCcC
Confidence 2334679999999999998887654 79999999999987642110000 00111112111111 12467
Q ss_pred hHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 244 VSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
++|+|++++.++.... .| .+.+.++
T Consensus 478 ~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 478 PEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred HHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 8999999999997543 44 5555544
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=128.38 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=113.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc----------------C
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL----------------I 93 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------------~ 93 (343)
|++|||||+|+||.+++++|+++| ++|++++|+... ..... ...++.++.+|+.+... .
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~r~~~~---~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVARSRHP---SLAAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEecCcch---hhhhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 689999999999999999999999 999999885432 11111 12367889999987621 1
Q ss_pred CCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|++||++|...... ..++....+..|+.++..+.+.+ .+.+. ++|++||...+.
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 142 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN-------------- 142 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC--------------
Confidence 4789999998653211 12234566788888866655544 44444 899999987653
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH--hCCceEEEEeccccCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ--HGIQIRIARIFNTYGP 206 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--~~~~~~i~R~~~v~G~ 206 (343)
+..+...|+.+|...|.+++.+..+ .++++..++|+.+-.+
T Consensus 143 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 3344567999999999999988765 4799999999877543
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=119.45 Aligned_cols=182 Identities=17% Similarity=0.134 Sum_probs=129.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------c--CCCCEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------L--IEVDQIY 99 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~~~d~vi 99 (343)
++++||||+|+||++++++|+++| ++|++++|.... ..... ..+++++.+|+.+.. + .++|+||
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r~~~~----~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADG-WRVIATARDAAA----LAALQ-ALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCC-CEEEEEECCHHH----HHHHH-hccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 689999999999999999999999 999999885322 11111 235678899998762 1 1489999
Q ss_pred EecCCCCcc------ccccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcc-cCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV-YGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 100 ~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v-~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|++|..... ....++...++.|+.++..++.++.+ .+.++|++||... ++.. +..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~~ 141 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TGT 141 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cCC
Confidence 999865211 13345567889999999999988864 2237899988643 3311 111
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh-CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH-GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
+...|+.+|...+.+++.+..+. ++++..++|+++..+... + ...+..++.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~------------------------~----~~~~~~~~~ 193 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG------------------------A----QAALDPAQS 193 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC------------------------C----CCCCCHHHH
Confidence 12359999999999999887664 689999999988765310 0 013566788
Q ss_pred HHHHHHHHhcCC
Q 019309 248 VDGLIRLMEGEN 259 (343)
Q Consensus 248 a~~i~~~~~~~~ 259 (343)
+..++.++....
T Consensus 194 ~~~~~~~~~~~~ 205 (222)
T PRK06953 194 VAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHhcC
Confidence 888888776443
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=124.68 Aligned_cols=209 Identities=15% Similarity=0.073 Sum_probs=136.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--------CCccchhhhcC--CCceEEEEcccCCcc-----
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--------GSKDNLKKWIG--HPRFELIRHDVTEPL----- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--------~~~~~~~~~~~--~~~~~~~~~d~~~~~----- 91 (343)
+++++++||||++.||.++++.|.++| ++|++++|... .........+. ...+.++.+|+.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 467999999999999999999999999 99988877430 01111111111 235778899999852
Q ss_pred -------cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----Hc---C----CeEEEEeCCcccC
Q 019309 92 -------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RV---G----ARILLTSTSEVYG 149 (343)
Q Consensus 92 -------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~---~----~r~i~~SS~~v~~ 149 (343)
...+|++|||||...... ...+....++.|+.++..++.++. +. + .++|++||...+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 236999999999654211 223456778999999888877664 21 1 3799999976542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcC
Q 019309 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG 226 (343)
Q Consensus 150 ~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~ 226 (343)
+......|+.+|...+.+.+.++.+ .|+++..+.|+ +..+. ...........
T Consensus 163 ----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~--------~~~~~~~~~~~ 217 (286)
T PRK07791 163 ----------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM--------TETVFAEMMAK 217 (286)
T ss_pred ----------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc--------chhhHHHHHhc
Confidence 2223457999999999988887765 48999999997 42221 01111111111
Q ss_pred CCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Ccc-eEecCC
Q 019309 227 EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGP-VNIGNP 268 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~-~~~~~~ 268 (343)
. +........++|++++++.++.... .|. +.+.++
T Consensus 218 ~-------~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 256 (286)
T PRK07791 218 P-------EEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGG 256 (286)
T ss_pred C-------cccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCC
Confidence 1 0111235678999999999987533 454 444444
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-15 Score=126.75 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=134.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+++++||||+|+||.++++.|+++| ++|++++|..... +.+.... ..++..+.+|+.+.. +.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDKSAAGL-QELEAAH-GDAVVGVEGDVRSLDDHKEAVARCVAAFGK 79 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHhhc-CCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999 9999998853211 1111111 235788899998752 236
Q ss_pred CCEEEEecCCCCcc-cc---c-----cChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI-FY---K-----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-~~---~-----~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+|++||+||..... .. . .+....++.|+.++..+++++.+. +.++|++||...+.
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------------ 147 (262)
T TIGR03325 80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------------ 147 (262)
T ss_pred CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec------------
Confidence 89999999864211 00 1 134567889999999998888642 23788888876542
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCC----ccHHHHH-HHHHHcCCCeEEecC
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDD----GRVVSNF-IAQALRGEPLTVQKP 234 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+++.++.+.+ +++..+.||.+..+...... ....... .....+. ..+
T Consensus 148 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p---- 218 (262)
T TIGR03325 148 ----PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS-VLP---- 218 (262)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh-cCC----
Confidence 222235699999999999999988753 78899999998776422100 0000000 0111111 111
Q ss_pred CceeEeeeehHHHHHHHHHHHhc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
...+...+|+|++++.++..
T Consensus 219 ---~~r~~~p~eva~~~~~l~s~ 238 (262)
T TIGR03325 219 ---IGRMPDAEEYTGAYVFFATR 238 (262)
T ss_pred ---CCCCCChHHhhhheeeeecC
Confidence 11256779999999988865
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=121.84 Aligned_cols=213 Identities=13% Similarity=0.034 Sum_probs=138.3
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
++++.+|||||++ -||.++++.|.++| ++|++..|+.. ..+....... ......+.+|+.|..
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~-~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEA-LGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchH-HHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 5678999999997 99999999999999 99999887431 1111222211 112346889999873
Q ss_pred cCCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHH---cCCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~---~~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+..+|++|||||.... ....++....++.|+.++..++.++.. .+.++|++||.....
T Consensus 83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~----------- 151 (271)
T PRK06505 83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR----------- 151 (271)
T ss_pred hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-----------
Confidence 2369999999986431 112234456778999988888776642 234899999975431
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .. ........... .++
T Consensus 152 -----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-~~-~~~~~~~~~~~--~p~------ 216 (271)
T PRK06505 152 -----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-GD-ARAIFSYQQRN--SPL------ 216 (271)
T ss_pred -----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC-cc-hHHHHHHHhhc--CCc------
Confidence 1222356999999999999888876 379999999998877532110 00 00111111111 111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+..++|+|++++.++.... .| .+.+.++
T Consensus 217 -~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 217 -RRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred -cccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 124567999999999997543 34 4455444
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=118.13 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=126.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi~~ 101 (343)
|+++||||+|.||.++++.|.++ ++|+++.|+.. .+.+|+.+.. ..++|++||+
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ 62 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSA 62 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence 68999999999999999999988 78988887421 3467777652 2379999999
Q ss_pred cCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchH
Q 019309 102 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 102 a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
+|...... ...+....++.|+.++.++++++... +.+++++||.... .+......|+
T Consensus 63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~----------------~~~~~~~~Y~ 126 (199)
T PRK07578 63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD----------------EPIPGGASAA 126 (199)
T ss_pred CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC----------------CCCCCchHHH
Confidence 98643211 22344566789999999999887642 3379999986543 1223346799
Q ss_pred HhHHHHHHHHHHHHHH--hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQ--HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~--~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
.+|...+.+.+.++.+ .|+++..++|+.+-.+. ... +..+ +. ..++.++|+|+++.
T Consensus 127 ~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~---------~~~------~~~~----~~---~~~~~~~~~a~~~~ 184 (199)
T PRK07578 127 TVNGALEGFVKAAALELPRGIRINVVSPTVLTESL---------EKY------GPFF----PG---FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch---------hhh------hhcC----CC---CCCCCHHHHHHHHH
Confidence 9999999999888775 47999999998774331 000 0001 11 13578999999999
Q ss_pred HHHhcCC-CcceE
Q 019309 253 RLMEGEN-TGPVN 264 (343)
Q Consensus 253 ~~~~~~~-~~~~~ 264 (343)
.+++... ++.++
T Consensus 185 ~~~~~~~~g~~~~ 197 (199)
T PRK07578 185 RSVEGAQTGEVYK 197 (199)
T ss_pred HHhccceeeEEec
Confidence 9998654 33444
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=138.85 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=120.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
.++++|||||+|+||+++++.|.++| ++|++++|+..... .+...+. ..++.++.+|++|+.. .
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG-AEVVASDIDEAAAE-RTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999 99999998542221 1111111 2367889999998732 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|++|||||...... ...+....+++|+.++.++.+++. +.+ .++|++||...|.
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 457 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA-------------- 457 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc--------------
Confidence 5899999999754222 223445677899999988887653 333 3899999998874
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+-.+.
T Consensus 458 --~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 502 (582)
T PRK05855 458 --PSRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNI 502 (582)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccc
Confidence 2233467999999999988887755 47999999999886653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=140.83 Aligned_cols=194 Identities=13% Similarity=0.058 Sum_probs=137.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
+.+|+++||||+|+||.++++.|.++| ++|++++|+.....+...... ...++.++.+|+.|.. ..
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 357899999999999999999999999 999999985422111111111 1246888999999863 12
Q ss_pred CCCEEEEecCCCCcccc------ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~------~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
++|++||+||....... ..+....++.|+.++..++.++ ++.+. ++|++||.+.+..
T Consensus 448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 515 (657)
T PRK07201 448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN------------ 515 (657)
T ss_pred CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC------------
Confidence 59999999986421111 1345677889999888776665 44555 8999999987742
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
......|+.+|...+.+.+.++.+ .|+++.+++||.+..+...+. .. +. ..
T Consensus 516 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~---------------~~---~~----~~ 569 (657)
T PRK07201 516 ----APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT---------------KR---YN----NV 569 (657)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc---------------cc---cc----CC
Confidence 223356999999999999887765 489999999999987642111 00 00 11
Q ss_pred eeeehHHHHHHHHHHHhcCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~ 259 (343)
.....+++|+.++..+.+..
T Consensus 570 ~~~~~~~~a~~i~~~~~~~~ 589 (657)
T PRK07201 570 PTISPEEAADMVVRAIVEKP 589 (657)
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 24678999999999887543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=124.30 Aligned_cols=228 Identities=13% Similarity=0.103 Sum_probs=139.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~~ 94 (343)
|+++++||||++.||.++++.|.++|.++|+++.|+.....+....+. ....+.++.+|+.+.. ..+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999986788888885432211111111 1235778899998762 236
Q ss_pred CCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEeCCcccCCCCCC----CCCC
Q 019309 95 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYGDPLIH----PQPE 158 (343)
Q Consensus 95 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~---~r~i~~SS~~v~~~~~~~----~~~e 158 (343)
+|++||+||..... ...++....+++|+.++..++.++ ++.+ .++|++||...+...... +...
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 99999999964321 122344567889998877775554 3442 499999998775421110 0000
Q ss_pred CCC-------------CCCCCCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHH
Q 019309 159 TYW-------------GNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIA 221 (343)
Q Consensus 159 ~~~-------------~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~ 221 (343)
++. ....+..+...|+.+|.+...+.+.+.++ .|+.+..++||+|...............++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~~ 241 (314)
T TIGR01289 162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFP 241 (314)
T ss_pred cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHHH
Confidence 000 00123344567999999988887777654 3699999999998633211100111111111
Q ss_pred HHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---CcceEe
Q 019309 222 QALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNI 265 (343)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~ 265 (343)
..... . ...+..+++.++.++.++.... +|.|.-
T Consensus 242 ~~~~~---~-------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~ 278 (314)
T TIGR01289 242 PFQKY---I-------TKGYVSEEEAGERLAQVVSDPKLKKSGVYWS 278 (314)
T ss_pred HHHHH---H-------hccccchhhhhhhhHHhhcCcccCCCceeee
Confidence 11110 0 0124678889998888887543 455554
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=122.24 Aligned_cols=215 Identities=14% Similarity=0.065 Sum_probs=138.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc--------cCCCCE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL--------LIEVDQ 97 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~--------~~~~d~ 97 (343)
.+|+++|||++|.||.++++.|.++| ++|++++|+..........+.. ..++.++.+|+.++. ...+|.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999999 8999999854322111111111 235788899998763 246999
Q ss_pred EEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 98 vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+|||+|...... ...+....++.|+.+...+..++ ++.+. ++|++||.... .+..
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~----------------~~~~ 148 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE----------------NPDA 148 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc----------------CCCC
Confidence 999998643211 22344566788999888877766 34433 89999986432 1222
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC----ccHH--HHHHHHHHcCCCeEEecCCceeE
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD----GRVV--SNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
....|+.+|...+.+.+.++.+ .|+++..+.||.+..+...... ...+ ......... ..+ ..
T Consensus 149 ~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~ 219 (259)
T PRK06125 149 DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLA--GLP-------LG 219 (259)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhc--cCC-------cC
Confidence 3356899999999998887654 4799999999887765210000 0000 000011110 011 11
Q ss_pred eeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.+..++|+|++++.++.... +| .+.+.++
T Consensus 220 ~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg 252 (259)
T PRK06125 220 RPATPEEVADLVAFLASPRSGYTSGTVVTVDGG 252 (259)
T ss_pred CCcCHHHHHHHHHHHcCchhccccCceEEecCC
Confidence 35688999999999987543 44 4455544
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-14 Score=120.25 Aligned_cols=203 Identities=14% Similarity=0.028 Sum_probs=134.7
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
+.+|+++||||+ +-||.+++++|.++| ++|++++|+... .+.+..... .....++.+|+.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKA-RPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhh-HHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence 467999999998 599999999999999 999998885321 111121111 123457889998862
Q ss_pred cCCCCEEEEecCCCCcc--------ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~--------~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+..+|++|||||..... ...++....+++|+.++..+.+++... +.++|++||.....
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~----------- 154 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK----------- 154 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc-----------
Confidence 23699999999864311 122345677899999999988877532 33899999865421
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .. ........... .++
T Consensus 155 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p~------ 219 (258)
T PRK07533 155 -----VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DD-FDALLEDAAER--APL------ 219 (258)
T ss_pred -----CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CC-cHHHHHHHHhc--CCc------
Confidence 1122356999999999988888765 479999999998866531100 00 11112222211 111
Q ss_pred eEeeeehHHHHHHHHHHHhcC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~ 258 (343)
..+..++|++++++.++...
T Consensus 220 -~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 220 -RRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred -CCCCCHHHHHHHHHHHhChh
Confidence 12567899999999999754
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-14 Score=119.52 Aligned_cols=213 Identities=15% Similarity=0.047 Sum_probs=136.6
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
+.+|+++||||++ -||.++++.|.++| ++|++..|+. ...+....... ...+..+.+|+.|+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 4678999999985 89999999999999 9998888752 11122222211 134567889999862
Q ss_pred cCCCCEEEEecCCCCccc---------cccChHHHHHHHHHHHHHHHHHHHH---cCCeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF---------YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~---------~~~~~~~~~~~nv~~~~~l~~~a~~---~~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
+..+|++|||||...... ...+....++.|+.+...+.+++.. .+.++|++||....
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~----------- 150 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------- 150 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC-----------
Confidence 235899999998643211 1123345678898888777777643 22389999987542
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .. ........... .+
T Consensus 151 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p------ 215 (262)
T PRK07984 151 -----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KD-FRKMLAHCEAV--TP------ 215 (262)
T ss_pred -----CCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcC-Cc-hHHHHHHHHHc--CC------
Confidence 12222356999999999999988875 479999999998865421100 00 11111111111 11
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+..++|+++++++++.... .| .+.+.++
T Consensus 216 -~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 216 -IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred -CcCCCCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 1125778999999999997543 34 4444444
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=117.74 Aligned_cols=198 Identities=16% Similarity=0.053 Sum_probs=130.5
Q ss_pred CCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCC-------cc---chhhhcC--CCceEEEEcccCCcc--
Q 019309 28 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGS-------KD---NLKKWIG--HPRFELIRHDVTEPL-- 91 (343)
Q Consensus 28 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~-------~~---~~~~~~~--~~~~~~~~~d~~~~~-- 91 (343)
++++|+||||+| .||.+++++|.++| ++|++..|....+ .. .....+. ...+.++.+|+.+..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAG-ADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 578999999995 79999999999999 8888875421111 01 1111111 235778899998763
Q ss_pred ----------cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCC
Q 019309 92 ----------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPL 152 (343)
Q Consensus 92 ----------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~ 152 (343)
...+|++||+||...... ..++....++.|+.+...+.. .+++.+. +||++||....
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---- 159 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ---- 159 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC----
Confidence 225899999998643221 122344568889988877754 4344433 89999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
.+..+...|+.+|...+.+.+.++.+ .++++..++|+.+-.+... ......+....
T Consensus 160 ------------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~-------~~~~~~~~~~~-- 218 (256)
T PRK12859 160 ------------GPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT-------EEIKQGLLPMF-- 218 (256)
T ss_pred ------------CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC-------HHHHHHHHhcC--
Confidence 23334567999999999998888765 4799999999988665311 11111111111
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
+ ...+...+|+++++..++...
T Consensus 219 ~-------~~~~~~~~d~a~~~~~l~s~~ 240 (256)
T PRK12859 219 P-------FGRIGEPKDAARLIKFLASEE 240 (256)
T ss_pred C-------CCCCcCHHHHHHHHHHHhCcc
Confidence 1 112456799999999988754
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-14 Score=120.44 Aligned_cols=213 Identities=13% Similarity=0.006 Sum_probs=135.6
Q ss_pred cCCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
+.+++++|||| ++-||.++++.|.++| ++|++..|.. ...+.+.+... ......+.+|+.|+.
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQG-AELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 36789999997 6799999999999999 9998876642 11222222211 123457889999863
Q ss_pred cCCCCEEEEecCCCCcc-----c----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPI-----F----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~-----~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
..++|++|||||..... . ...+....+++|+.++..+..++. +.+.++|++||...+.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~--------- 152 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR--------- 152 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---------
Confidence 23699999999975321 0 111234456788888777766543 2223799999876541
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+....... ........... .++
T Consensus 153 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~--~~~~~~~~~~~--~p~---- 217 (261)
T PRK08690 153 -------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIAD--FGKLLGHVAAH--NPL---- 217 (261)
T ss_pred -------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCc--hHHHHHHHhhc--CCC----
Confidence 2223456999999999988887654 58999999999887653110000 01111111111 111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+..++|+|+++..++.... .| .+.+.++
T Consensus 218 ---~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 218 ---RRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred ---CCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 126678999999999998543 34 4444444
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-14 Score=120.50 Aligned_cols=214 Identities=14% Similarity=0.040 Sum_probs=139.6
Q ss_pred ccCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc-----------
Q 019309 26 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL----------- 91 (343)
Q Consensus 26 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~----------- 91 (343)
.+.+|++|||||+ +-||.++++.|.++| ++|++..|.. ...+.+..+.. ......+.+|+.++.
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~r~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTYQGD-ALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCch-HHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH
Confidence 3467899999997 899999999999999 9998887642 11122222211 123556889998762
Q ss_pred -cCCCCEEEEecCCCCcc--------ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~--------~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
...+|++||+||..... ...++....+++|+.++..++.++... +.++|++||.....
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---------- 154 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK---------- 154 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc----------
Confidence 23599999999865310 122345677899999999998877642 23899999865431
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+..+..... .. .. ........ ..++
T Consensus 155 ------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~-~~-~~~~~~~~-~~p~----- 219 (272)
T PRK08159 155 ------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI-GD-FR-YILKWNEY-NAPL----- 219 (272)
T ss_pred ------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC-Cc-ch-HHHHHHHh-CCcc-----
Confidence 22233569999999999998887763 79999999998865421100 00 00 01111111 1111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+..++|+|++++.++.... .| .+.+.++
T Consensus 220 --~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG 253 (272)
T PRK08159 220 --RRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSG 253 (272)
T ss_pred --cccCCHHHHHHHHHHHhCccccCccceEEEECCC
Confidence 125678999999999997543 44 4555554
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-14 Score=121.48 Aligned_cols=213 Identities=14% Similarity=0.036 Sum_probs=138.2
Q ss_pred ccCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc----------
Q 019309 26 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 26 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~---------- 91 (343)
.+.+|+++||||+ +-||.++++.|.++| ++|++..|+.. ..+.+..... ... .++.+|+.|..
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~-~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEA-LKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHH-HHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHH
Confidence 3568999999997 799999999999999 99998887531 1112222111 112 57889999873
Q ss_pred --cCCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
..++|++|||||.... ....++....++.|+.++..+.+++... +.++|++||.....
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------- 149 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------- 149 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------
Confidence 2369999999996431 1112344567899999998888777532 23899999975421
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+..+..... .. .... ..... ...++
T Consensus 150 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~-~~~~-~~~~~-~~~pl---- 214 (274)
T PRK08415 150 -------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-GD-FRMI-LKWNE-INAPL---- 214 (274)
T ss_pred -------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc-ch-hhHH-hhhhh-hhCch----
Confidence 1222356999999999999888865 479999999998876431100 00 0000 00000 01111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.-+..++|+|++++.++.... .| .+.+.++
T Consensus 215 ---~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG 248 (274)
T PRK08415 215 ---KKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAG 248 (274)
T ss_pred ---hccCCHHHHHHHHHHHhhhhhhcccccEEEEcCc
Confidence 125678999999999997543 44 4455444
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=118.70 Aligned_cols=204 Identities=12% Similarity=0.017 Sum_probs=133.3
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh---hhcCCCceEEEEcccCCcc----------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK---KWIGHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~---------- 91 (343)
+.+|+++||||+ +-||.++++.|.++| ++|++..|.... .+.+. ..+...++.++.+|+.|+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 357899999997 899999999999999 999988774311 12222 2222246788899999873
Q ss_pred --cCCCCEEEEecCCCCc-----cc---cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~-----~~---~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
+.++|++|||||.... .. ........++.|+.++..+.+++... +.++|++||....
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~---------- 152 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE---------- 152 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc----------
Confidence 2359999999986431 11 11223456688888887777666532 2389999997543
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+..... .. .......... ..+
T Consensus 153 ------~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~--~~p----- 217 (257)
T PRK08594 153 ------RVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV-GG-FNSILKEIEE--RAP----- 217 (257)
T ss_pred ------cCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-cc-ccHHHHHHhh--cCC-----
Confidence 122223569999999999998887653 79999999998876531100 00 0011111111 111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+..++|++++++.++....
T Consensus 218 --~~r~~~p~~va~~~~~l~s~~~ 239 (257)
T PRK08594 218 --LRRTTTQEEVGDTAAFLFSDLS 239 (257)
T ss_pred --ccccCCHHHHHHHHHHHcCccc
Confidence 1125678999999999987543
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=118.14 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=131.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc---------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL---------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~d~vi~ 100 (343)
|+++||||+|.||+++++.|.++| ++|+++.|+. +.+.......++.++.+|+.++.. .++|++||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~r~~----~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGARR----DDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 579999999999999999999999 9999998843 222222111246788899987632 25899999
Q ss_pred ecCCCCc----c---c--cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 101 LACPASP----I---F--YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 101 ~a~~~~~----~---~--~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
++|.... . . ...+....++.|+.++..+++++... +.++|++||... .
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------------~ 135 (223)
T PRK05884 76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------------P 135 (223)
T ss_pred CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC--------------------C
Confidence 9974210 0 0 12345677899999999998888642 348999998641 1
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...+.+.+.++.+ .|+++..+.||.+..+. .... . .. + .-.++
T Consensus 136 ~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~------------~~~~-~--~~-----p-----~~~~~ 190 (223)
T PRK05884 136 AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG------------YDGL-S--RT-----P-----PPVAA 190 (223)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh------------hhhc-c--CC-----C-----CCCHH
Confidence 1246999999999999888765 47899999998875432 0000 0 00 0 12679
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|+++++..++.... .| .+.+.++
T Consensus 191 ~ia~~~~~l~s~~~~~v~G~~i~vdgg 217 (223)
T PRK05884 191 EIARLALFLTTPAARHITGQTLHVSHG 217 (223)
T ss_pred HHHHHHHHHcCchhhccCCcEEEeCCC
Confidence 99999999987543 33 4454443
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=116.16 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=130.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi~ 100 (343)
|+|+||||+|+||++++++|.+++. ..|....|.... . ....++.++.+|+.+.. +.++|+|||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~---~----~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP---D----FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc---c----cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 6899999999999999999999962 455555553211 1 12357888999998763 347999999
Q ss_pred ecCCCCccc-------cc---cChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 101 LACPASPIF-------YK---YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 101 ~a~~~~~~~-------~~---~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
++|...... .. +.....+..|+.+...+...+.. .+. +++++||... .. .+ .
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~--~~-----~~------~ 140 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVG--SI-----SD------N 140 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccc--cc-----cc------C
Confidence 999764211 01 12335678888888777766643 333 7899987431 10 00 1
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+++.++.+ .++++..+.||.+.++... . .... . ....
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~----~--------~~~~--~-------~~~~ 199 (235)
T PRK09009 141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK----P--------FQQN--V-------PKGK 199 (235)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc----c--------hhhc--c-------ccCC
Confidence 2223457999999999999888865 3688889999888765411 0 0000 1 1122
Q ss_pred eeehHHHHHHHHHHHhcCC---CcceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TGPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~ 269 (343)
++..+|+|++++.++.... .|.+....++
T Consensus 200 ~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (235)
T PRK09009 200 LFTPEYVAQCLLGIIANATPAQSGSFLAYDGE 231 (235)
T ss_pred CCCHHHHHHHHHHHHHcCChhhCCcEEeeCCc
Confidence 5788999999999998753 5554444333
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=118.72 Aligned_cols=212 Identities=14% Similarity=0.020 Sum_probs=136.6
Q ss_pred CCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-CceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-PRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~------------~ 92 (343)
.+|.++||||++ -||.++++.|.++| ++|++..|+. ...+.+.++... ....++.+|+.|+. +
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 578999999997 79999999999999 9998887742 111222222111 12335689999862 2
Q ss_pred CCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
..+|++||++|.... .....+....++.|+.++..++.++... +.++|++||.....
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------ 152 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------ 152 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence 359999999985421 1122345567889999988888776422 23899999975431
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .. ........... .++
T Consensus 153 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p~------- 217 (260)
T PRK06603 153 ----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAI-GD-FSTMLKSHAAT--APL------- 217 (260)
T ss_pred ----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcC-CC-cHHHHHHHHhc--CCc-------
Confidence 1222356999999999988888765 479999999998866531100 00 01111111111 111
Q ss_pred EeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+..++|+|++++.++.... .| .+.+.++
T Consensus 218 ~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 218 KRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred CCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 125678999999999997543 34 4454443
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-14 Score=124.71 Aligned_cols=191 Identities=14% Similarity=0.068 Sum_probs=130.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCc--c--------cC-
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEP--L--------LI- 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~--~--------~~- 93 (343)
.++.++||||||.||.+++++|.++| ++|++++|+.+...+...+.. ....+..+.+|+.+. . +.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 47899999999999999999999999 999999986432221111111 123567778888742 1 11
Q ss_pred -CCCEEEEecCCCCcc---c---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 94 -EVDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 94 -~~d~vi~~a~~~~~~---~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
++|++||+||..... . ..++....+++|+.++..+.+++. +.+. ++|++||...+..+
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~---------- 200 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP---------- 200 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC----------
Confidence 466999999865321 1 122344678899999998888764 3444 89999998764210
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...+.+.+.+..+. |+++..++||.+-.+... . ....
T Consensus 201 ----~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~-------------~-~~~~---------- 252 (320)
T PLN02780 201 ----SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS-------------I-RRSS---------- 252 (320)
T ss_pred ----CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc-------------c-cCCC----------
Confidence 11224679999999999998887664 799999999988665310 0 0000
Q ss_pred EeeeehHHHHHHHHHHHhc
Q 019309 239 RSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~ 257 (343)
.-....+++|+.++..+..
T Consensus 253 ~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 253 FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 0134678899999988864
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=117.19 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=138.0
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCC-Cc-cchhhhcC-CCceEEEEcccCCcc----------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTG-SK-DNLKKWIG-HPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~-~~~~~~~~-~~~~~~~~~d~~~~~---------- 91 (343)
+++++++||||+ +-||.++++.|.+.| ++|++..|.... +. +.+.+... ...+.++.+|+.|+.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 367899999986 799999999999999 998887664321 11 11222211 124667889998863
Q ss_pred --cCCCCEEEEecCCCCc-----cc---cccChHHHHHHHHHHHHHHHHHHHH---cCCeEEEEeCCcccCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~-----~~---~~~~~~~~~~~nv~~~~~l~~~a~~---~~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
..++|++|||||.... .. ..++....++.|+.++..+..++.. .+.++|++||....
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~---------- 152 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV---------- 152 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc----------
Confidence 2369999999986421 11 1233456778899988888777643 23489999997543
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+..... .. ........... .+
T Consensus 153 ------~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p----- 217 (258)
T PRK07370 153 ------RAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GG-ILDMIHHVEEK--AP----- 217 (258)
T ss_pred ------cCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-cc-chhhhhhhhhc--CC-----
Confidence 122234569999999999999988764 68999999998876531100 00 01111111111 11
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
...+...+|++.++..++.... .| .+.+.++
T Consensus 218 --~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 218 --LRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred --cCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 1135677999999999997543 34 4444443
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=116.13 Aligned_cols=212 Identities=13% Similarity=-0.008 Sum_probs=136.5
Q ss_pred CCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 92 (343)
++++++|||| ++-||.++++.|.++| ++|++..|... ..+.+..... ......+.+|+.|+. +
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 5789999996 6799999999999999 99988765321 1222222211 122346789998863 2
Q ss_pred CCCCEEEEecCCCCcc---------ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..+|++||+||..... ....+....+++|+.++..+.+++... +.++|++||.....
T Consensus 83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~----------- 151 (260)
T PRK06997 83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER----------- 151 (260)
T ss_pred CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc-----------
Confidence 3699999999865321 112344567889999998888877542 23899999875421
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .. ........... .++
T Consensus 152 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p~------ 216 (260)
T PRK06997 152 -----VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGI-KD-FGKILDFVESN--APL------ 216 (260)
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccc-cc-hhhHHHHHHhc--Ccc------
Confidence 2222356999999999999988875 479999999998866421100 00 01111111111 111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..+..++|+++++..++.... .| .+.+.++
T Consensus 217 -~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 217 -RRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred -cccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 125678999999999998643 33 4454443
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-13 Score=114.43 Aligned_cols=202 Identities=14% Similarity=0.056 Sum_probs=131.7
Q ss_pred CCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCC-CCccchhhhcCCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFT-GSKDNLKKWIGHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~------------~ 92 (343)
.+++++|||| ++-||.++++.|.++| ++|++.+|... ...+.+...+. ..+.++.+|+.++. .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999 8999999999999999 99999887431 11122222222 25678899999873 2
Q ss_pred CCCCEEEEecCCCCc-----cc---cccChHHHHHHHHHHHHHHHHHHHH---cCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~-----~~---~~~~~~~~~~~nv~~~~~l~~~a~~---~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|++||+||.... .. .+++....+++|+.++..+..++.. .+.++|++|+....
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------------- 150 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------------- 150 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-------------
Confidence 369999999986531 11 1223345688999988888777653 22378888764321
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+....... ........... .++ .
T Consensus 151 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~--~p~------~ 216 (256)
T PRK07889 151 ----AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG--FELLEEGWDER--APL------G 216 (256)
T ss_pred ----cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC--cHHHHHHHHhc--Ccc------c
Confidence 1112345899999999988887765 47999999999887653211000 01111111111 111 1
Q ss_pred EeeeehHHHHHHHHHHHhcC
Q 019309 239 RSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~ 258 (343)
..+..++|+|++++.++...
T Consensus 217 ~~~~~p~evA~~v~~l~s~~ 236 (256)
T PRK07889 217 WDVKDPTPVARAVVALLSDW 236 (256)
T ss_pred cccCCHHHHHHHHHHHhCcc
Confidence 12567899999999999764
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=125.90 Aligned_cols=209 Identities=17% Similarity=0.088 Sum_probs=137.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+++++||||+|.||.++++.|.++| ++|++++|.. ..+.+.......+..++.+|+++... .++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~~~--~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDVPA--AGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCc--cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999 9999988732 12222222212245678889987631 258
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcC-----CeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG-----ARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~-----~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||++|...... ........++.|+.++..+.+++.... .+||++||...+. .
T Consensus 286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~----------------g 349 (450)
T PRK08261 286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA----------------G 349 (450)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC----------------C
Confidence 99999998654221 223445678899999999999987632 3899999976542 1
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+++.++.+ .++++..+.|+.+-.+... .+........+. ...+ ...-.
T Consensus 350 ~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~-----~~~~~~~~~~~~-~~~l-------~~~~~ 416 (450)
T PRK08261 350 NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTA-----AIPFATREAGRR-MNSL-------QQGGL 416 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhh-----ccchhHHHHHhh-cCCc-------CCCCC
Confidence 123457999999888888777654 4799999999877543210 011111111110 0000 11234
Q ss_pred hHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 244 VSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
..|+++++..++.... +| .+.++++
T Consensus 417 p~dva~~~~~l~s~~~~~itG~~i~v~g~ 445 (450)
T PRK08261 417 PVDVAETIAWLASPASGGVTGNVVRVCGQ 445 (450)
T ss_pred HHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 5799999999987543 34 4555543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=117.58 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=113.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc----------CCCCEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL----------IEVDQIY 99 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~d~vi 99 (343)
++++||||+|+||++++++|.++| ++|++++|...... .+. ...++.+..+|+.|... .++|+||
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDT-ALQ---ALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCcchH-HHH---hccccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 689999999999999999999999 99999998643321 222 22467788899987621 2599999
Q ss_pred EecCCCCccc------cccChHHHHHHHHHHHHHHHHHHHHc---C-CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 100 ~~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~a~~~---~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
|++|...... ...+....+..|+.++..+++++... + .+++++||.. +.... .+..+
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----------~~~~~ 143 (225)
T PRK08177 77 VNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----------PDGGE 143 (225)
T ss_pred EcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----------CCCCC
Confidence 9998653211 12233456677888888887777532 2 3788888753 21110 12223
Q ss_pred CCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
...|+.+|...+.+++.++.+ .++++..++||++-.+.
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 346999999999999988765 36899999999886653
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=121.72 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=120.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~ 101 (343)
.++|+|+||||+|+||+++++.|.++| ++|++++|+.......... ....+..+.+|+.|.. +.++|++||+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 467899999999999999999999999 9999998853221111111 1124677889998863 4579999999
Q ss_pred cCCCCc-cccccChHHHHHHHHHHHHHHHHHHHH----cC---C--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 102 ACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG---A--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 102 a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~a~~----~~---~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
||.... ....++....++.|+.++..+++++.. .+ . .+|.+|++.. .+ ....
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-----------------~~-~~~~ 314 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-----------------NP-AFSP 314 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-----------------cC-CCch
Confidence 985432 222334567889999999999998743 22 1 2455544221 11 1124
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
.|+.+|...+.+..-...+.++.+..+.| ||... .+ + ....+..+|+|+.+
T Consensus 315 ~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~----gp~~t----~~----------~-----------~~~~~spe~vA~~i 365 (406)
T PRK07424 315 LYELSKRALGDLVTLRRLDAPCVVRKLIL----GPFKS----NL----------N-----------PIGVMSADWVAKQI 365 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEe----CCCcC----CC----------C-----------cCCCCCHHHHHHHH
Confidence 59999999988753322223444444444 44311 00 0 01246889999999
Q ss_pred HHHHhcCCCcce
Q 019309 252 IRLMEGENTGPV 263 (343)
Q Consensus 252 ~~~~~~~~~~~~ 263 (343)
+.+++++...++
T Consensus 366 l~~i~~~~~~i~ 377 (406)
T PRK07424 366 LKLAKRDFRNII 377 (406)
T ss_pred HHHHHCCCCEEE
Confidence 999987665433
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=129.06 Aligned_cols=202 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+++++||||++.||.++++.|.++| ++|+++.|+.....+.... + ..++.++.+|+.++. ..++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVADRNVERARERADS-L-GPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH-h-CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 9999998853222111111 1 135677899998863 1369
Q ss_pred CEEEEecCCCCc------cccccChHHHHHHHHHHHHHHHHHHHHc------CCeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 96 d~vi~~a~~~~~------~~~~~~~~~~~~~nv~~~~~l~~~a~~~------~~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
|++||+||.... .....+....++.|+.++..++.++... +.++|++||.....
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~-------------- 146 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV-------------- 146 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------------
Confidence 999999986321 1123445678899999999988887643 23899999986542
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ .++++..++|+.+-.+......... ......... .++ ...
T Consensus 147 --~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~-~~~~~~~~~--~~~-------~~~ 214 (520)
T PRK06484 147 --ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAG-KLDPSAVRS--RIP-------LGR 214 (520)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccc-hhhhHHHHh--cCC-------CCC
Confidence 2223357999999999998888765 3799999999988665321000000 000000000 011 112
Q ss_pred eeehHHHHHHHHHHHhcC
Q 019309 241 FCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~ 258 (343)
+...+|+++++..++...
T Consensus 215 ~~~~~~va~~v~~l~~~~ 232 (520)
T PRK06484 215 LGRPEEIAEAVFFLASDQ 232 (520)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 467899999999988753
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-13 Score=113.69 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=128.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------CCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~~ 95 (343)
|+++||||++.||.++++.|. +| ++|+++.|+.....+...++.. ...+.++.+|+.|... .++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999998 58 9999998854322211112111 1247789999998622 369
Q ss_pred CEEEEecCCCCcccc-c---cChHHHHHHHHHHHHHHH----HHHHHcC--CeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFY-K---YNPVKTIKTNVIGTLNML----GLAKRVG--ARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~~-~---~~~~~~~~~nv~~~~~l~----~~a~~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||++|....... . .+..+....|+.+...++ ..+.+.+ .++|++||...+-
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---------------- 142 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR---------------- 142 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------
Confidence 999999986532111 1 112234556666665443 3444443 4899999976531
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+..+.. .+.. + .+ -..
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~----------------~~~~-~---~~----~~~ 198 (246)
T PRK05599 143 ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMT----------------TGMK-P---AP----MSV 198 (246)
T ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhh----------------cCCC-C---CC----CCC
Confidence 2223456999999999998888776 368888999988765421 0000 0 00 024
Q ss_pred ehHHHHHHHHHHHhcCC-CcceEecC
Q 019309 243 YVSDMVDGLIRLMEGEN-TGPVNIGN 267 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~-~~~~~~~~ 267 (343)
.++|+|++++.+++... .+.+.+..
T Consensus 199 ~pe~~a~~~~~~~~~~~~~~~~~~~~ 224 (246)
T PRK05599 199 YPRDVAAAVVSAITSSKRSTTLWIPG 224 (246)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEeCc
Confidence 67999999999999765 34444443
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-13 Score=110.44 Aligned_cols=196 Identities=13% Similarity=0.090 Sum_probs=141.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.|..||||||++-||+.++.+|.++| .++.+.+.+.....+..........+..+.+|+++.+ ..++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 68899999999999999999999999 8888888877666655554433346889999999862 3469
Q ss_pred CEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a----~~~~-~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||........ +.-...+++|+.+......+. .+.+ .++|.++|..-+ ..
T Consensus 116 ~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~----------------~g 179 (300)
T KOG1201|consen 116 DILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL----------------FG 179 (300)
T ss_pred eEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc----------------cC
Confidence 9999999977643332 233467889998888877665 3433 499999998654 23
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH------hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ------HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~------~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.....+|+.||.++.-..+.+..+ .|++.+.+.|+.+=.. ++ .+ .. .-.....
T Consensus 180 ~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg------------mf----~~-~~----~~~~l~P 238 (300)
T KOG1201|consen 180 PAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG------------MF----DG-AT----PFPTLAP 238 (300)
T ss_pred CccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc------------cc----CC-CC----CCccccC
Confidence 334467999999988766666533 2688888888766421 11 11 11 1113456
Q ss_pred eeehHHHHHHHHHHHhcCCCc
Q 019309 241 FCYVSDMVDGLIRLMEGENTG 261 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~~~ 261 (343)
.+..+.+|+.++.+++....+
T Consensus 239 ~L~p~~va~~Iv~ai~~n~~~ 259 (300)
T KOG1201|consen 239 LLEPEYVAKRIVEAILTNQAG 259 (300)
T ss_pred CCCHHHHHHHHHHHHHcCCcc
Confidence 788899999999999877644
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-13 Score=108.73 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=112.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch---hhhc-CCCceEEEEcccCCcc------------cC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL---KKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
++++|+||+|+||.++++.|.++|.+.|+++.|+........ .... ...++.++.+|+.++. ..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999446888887543322111 1111 1235778899998752 12
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
.+|.|||++|...... ...+....++.|+.++..+++++.+.+. ++|++||..... +..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------------~~~ 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------------GNP 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc----------------CCC
Confidence 4799999998543211 1234456789999999999999988776 899999875531 112
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEecccc
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTY 204 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~ 204 (343)
....|+.+|...+.+++.+. ..+++++.+.|+.+-
T Consensus 145 ~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 GQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred CchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 23569999999999996654 558999999887653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=116.46 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=128.5
Q ss_pred EEEEEcCchhHHHHHHHHHHh----cCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcccC----------
Q 019309 31 RILVTGGAGFIGSHLVDKLME----NEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLLI---------- 93 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~---------- 93 (343)
.++||||+|.||.+++++|.+ .| ++|+++.|+.....+....+. ....+.++.+|+.+....
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 68 899999986432222111111 123578899999876311
Q ss_pred ------CCCEEEEecCCCCccc--c-----ccChHHHHHHHHHHHHHHHHHHHH----c-C--CeEEEEeCCcccCCCCC
Q 019309 94 ------EVDQIYHLACPASPIF--Y-----KYNPVKTIKTNVIGTLNMLGLAKR----V-G--ARILLTSTSEVYGDPLI 153 (343)
Q Consensus 94 ------~~d~vi~~a~~~~~~~--~-----~~~~~~~~~~nv~~~~~l~~~a~~----~-~--~r~i~~SS~~v~~~~~~ 153 (343)
+.|+|||+||...... . .++....++.|+.++..+..++.. . + .++|++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 1369999998643211 1 123456789999998777665532 2 2 3799999986542
Q ss_pred CCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH-----HHHHHHHHc
Q 019309 154 HPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV-----SNFIAQALR 225 (343)
Q Consensus 154 ~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~-----~~~~~~~~~ 225 (343)
+......|+.+|...+.+.+.++.+ .++++..+.||++-.+... ... ......+..
T Consensus 157 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~~ 220 (256)
T TIGR01500 157 ------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQ----QVREESVDPDMRKGLQE 220 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHH----HHHHhcCChhHHHHHHH
Confidence 2233457999999999999988766 3689999999888654210 000 000000110
Q ss_pred CCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 226 GEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
.. + .-.+..++|+|++++.++++
T Consensus 221 ~~--~-------~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 221 LK--A-------KGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HH--h-------cCCCCCHHHHHHHHHHHHhc
Confidence 00 0 01257789999999999974
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=111.96 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=113.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc---cchhhhcCCCceEEEEcccCCcc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK---DNLKKWIGHPRFELIRHDVTEPL----------- 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~----------- 91 (343)
...+|.|+|||||..||.+++.+|.++| ..++.+.|....-. +.+.+.....++.+..+|+.|..
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G-~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRG-AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCC-CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999 76666655432211 22233333235899999999862
Q ss_pred -cCCCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a----~~~~-~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+.++|++||+||......... +....++.|+-|+..+..++ ++.+ .++|.+||+.-+-
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~------------ 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM------------ 155 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc------------
Confidence 347999999999765333222 23356788887777766655 5555 4999999987652
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceE----EEEecccc
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIR----IARIFNTY 204 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~----i~R~~~v~ 204 (343)
+....+.|..||.+.+.+.+.+.++..-..+ ++-||.|-
T Consensus 156 ----~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~ 198 (282)
T KOG1205|consen 156 ----PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIE 198 (282)
T ss_pred ----CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCcee
Confidence 3333347999999999999999988654333 25565543
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-13 Score=106.01 Aligned_cols=202 Identities=21% Similarity=0.219 Sum_probs=140.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC-----CcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-----EPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~d~vi~~a~~ 104 (343)
.+.++.|+.||.|+++++...+.+ +.|..+.|+.. +..+..+. ..+.+..+|.. +..+.++..++.+++.
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv-~svgilsen~~--k~~l~sw~--~~vswh~gnsfssn~~k~~l~g~t~v~e~~gg 127 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVV-HSVGILSENEN--KQTLSSWP--TYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGG 127 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhc-eeeeEeecccC--cchhhCCC--cccchhhccccccCcchhhhcCCcccHHHhcC
Confidence 468999999999999999999999 99999998632 22222221 24555555554 3445578888888763
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
. .+...+..+|-....+.++++.+.|+ +|+|+|-.. ||- .+.-+ ..|-.+|+.+|..
T Consensus 128 f------gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--------------~~~i~-rGY~~gKR~AE~E 185 (283)
T KOG4288|consen 128 F------GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--------------PPLIP-RGYIEGKREAEAE 185 (283)
T ss_pred c------cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--------------CCccc-hhhhccchHHHHH
Confidence 3 34566778999999999999999999 899999653 221 12222 3699999999988
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCcc---HHHHHHHHHHcCC-----CeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGR---VVSNFIAQALRGE-----PLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+.+. ++.+-+|+|||++||...-..... .+...+.+..+.. ++++. +......|.++++|.+.+.++
T Consensus 186 ll~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~l--g~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 186 LLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLL--GPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCccc--ccccCCCcCHHHHHHHHHHhc
Confidence 7754 467889999999999842111111 1122233333222 24443 345678899999999999999
Q ss_pred hcCC-Ccce
Q 019309 256 EGEN-TGPV 263 (343)
Q Consensus 256 ~~~~-~~~~ 263 (343)
+++. .|++
T Consensus 261 ~dp~f~Gvv 269 (283)
T KOG4288|consen 261 EDPDFKGVV 269 (283)
T ss_pred cCCCcCcee
Confidence 9876 5544
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=104.34 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=108.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC-CCCccchhhhc--CCCceEEEEcccCCcc------------cCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSKDNLKKWI--GHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~ 94 (343)
|+++||||+|-||..++++|+++|.+.|+++.|+. ......+...+ ...++.++.+|+.++. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999746888888850 01111121111 2367899999999873 236
Q ss_pred CCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
+|++|||+|........ ++....+..|+.+...+.+++...+. ++|++||.... .+...
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~~~~~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV----------------RGSPG 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT----------------SSSTT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc----------------cCCCC
Confidence 99999999976632222 23447789999999999999888444 89999998765 23444
Q ss_pred CCchHHhHHHHHHHHHHHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ 190 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~ 190 (343)
...|+.+|...+.+++.++++
T Consensus 145 ~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHh
Confidence 568999999999999998876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=113.25 Aligned_cols=222 Identities=16% Similarity=0.054 Sum_probs=129.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----------cCCCCE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL----------LIEVDQ 97 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~d~ 97 (343)
..++|||+||||.+|+-+++.|+++| +.|.++.|........+.-.........+..+...+. .....+
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~ 156 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVI 156 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccccee
Confidence 44799999999999999999999999 9999999965443332220111223333333333221 112456
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC-----
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS----- 171 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~----- 171 (343)
++-|++.-+.. + +...-+.+...++.+++++|+..|+ ||+++||++.-. ...+..
T Consensus 157 v~~~~ggrp~~--e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~----------------~~~~~~~~~~~ 217 (411)
T KOG1203|consen 157 VIKGAGGRPEE--E-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTK----------------FNQPPNILLLN 217 (411)
T ss_pred EEecccCCCCc--c-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcc----------------cCCCchhhhhh
Confidence 66666533211 1 1222235677889999999999999 999999876531 111112
Q ss_pred -chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 172 -CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 172 -~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
.+-.+|+.+|+++. +.|++++|||++...-...... ... ....+-.. ..+..--.+.-.|+|+.
T Consensus 218 ~~~~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~~-----~~~----~~~~~~~~--~~~~~~~~i~r~~vael 282 (411)
T KOG1203|consen 218 GLVLKAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQR-----EVV----VDDEKELL--TVDGGAYSISRLDVAEL 282 (411)
T ss_pred hhhhHHHHhHHHHHH----hcCCCcEEEeccccccCCCCcc-----eec----ccCccccc--cccccceeeehhhHHHH
Confidence 24466777777664 6799999999986554321100 000 00001011 11111135677899999
Q ss_pred HHHHHhcCC--CcceEecCCCccCHHHHHHHHHHHh
Q 019309 251 LIRLMEGEN--TGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 251 i~~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
++.++.... ...+.......-.....++.+.+..
T Consensus 283 ~~~all~~~~~~~k~~~~v~~~~gpg~~~~~l~~~~ 318 (411)
T KOG1203|consen 283 VAKALLNEAATFKKVVELVLKPEGPGRPYKVLLELF 318 (411)
T ss_pred HHHHHhhhhhccceeEEeecCCCCCCccHHHHHhhc
Confidence 999998776 3344333333333334444444444
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-12 Score=110.41 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=128.7
Q ss_pred EEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------CCCCEE
Q 019309 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------IEVDQI 98 (343)
Q Consensus 33 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~~d~v 98 (343)
+||||++.||.++++.|.++|.++|++..|+.... +.....+. ...+.++.+|+.+... ..+|++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKA-ERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 69999999999999999999866888888753221 11212121 2357788999988631 358999
Q ss_pred EEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEeCCcccCCCC-C--CC---CC---
Q 019309 99 YHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYGDPL-I--HP---QP--- 157 (343)
Q Consensus 99 i~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~---~r~i~~SS~~v~~~~~-~--~~---~~--- 157 (343)
||+||..... ...++....+++|+.++..+...+ ++.+ .++|++||...+-... . .+ ..
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 9999864321 122344567899999877775544 4443 4999999986542100 0 00 00
Q ss_pred --------CC--CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHHHH
Q 019309 158 --------ET--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQA 223 (343)
Q Consensus 158 --------e~--~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~ 223 (343)
++ .+.+.....+...|+.+|.+.+...+.++++ .|+.+..+.||+|................+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~-~ 238 (308)
T PLN00015 160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFP-P 238 (308)
T ss_pred hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHH-H
Confidence 00 0000012234467999999977776766654 3799999999999643211110111100000 0
Q ss_pred HcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 224 LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
... ... ..+..+++.|+.++.++....
T Consensus 239 ~~~--~~~-------~~~~~pe~~a~~~~~l~~~~~ 265 (308)
T PLN00015 239 FQK--YIT-------KGYVSEEEAGKRLAQVVSDPS 265 (308)
T ss_pred HHH--HHh-------cccccHHHhhhhhhhhccccc
Confidence 000 000 114677899999998887543
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-13 Score=103.41 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=117.6
Q ss_pred hhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCC-----cccCCC
Q 019309 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-----PLLIEV 95 (343)
Q Consensus 22 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 95 (343)
+..+-|.+|..+|+||||-.|+.+++++++.+.+ +|+++.|........ ...+.....|... ....++
T Consensus 11 rEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at------~k~v~q~~vDf~Kl~~~a~~~qg~ 84 (238)
T KOG4039|consen 11 REDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT------DKVVAQVEVDFSKLSQLATNEQGP 84 (238)
T ss_pred HHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc------cceeeeEEechHHHHHHHhhhcCC
Confidence 4567788999999999999999999999999964 688888753221111 1344555555532 256789
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchH
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
|+.|.|.|-.-.. ...+..+.+.......++++|++.|+ +|+.+||.++-. .....|.
T Consensus 85 dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~------------------sSrFlY~ 143 (238)
T KOG4039|consen 85 DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADP------------------SSRFLYM 143 (238)
T ss_pred ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCc------------------ccceeee
Confidence 9999988744311 11222334444455678899999999 899999987632 2234599
Q ss_pred HhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIA 221 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~ 221 (343)
++|...|+-+.++.-+ .++|+|||.+.|...++..+.|..++..
T Consensus 144 k~KGEvE~~v~eL~F~---~~~i~RPG~ll~~R~esr~geflg~~~~ 187 (238)
T KOG4039|consen 144 KMKGEVERDVIELDFK---HIIILRPGPLLGERTESRQGEFLGNLTA 187 (238)
T ss_pred eccchhhhhhhhcccc---EEEEecCcceecccccccccchhhheeh
Confidence 9999999988665333 7999999999998766554555544433
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-12 Score=105.50 Aligned_cols=160 Identities=7% Similarity=0.022 Sum_probs=109.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
+++++++||||++-||.++++.|.++| ++|+++.|+.....+....... ...+..+.+|+.++. +.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999 9999998854322211111111 234667888988762 23
Q ss_pred -CCCEEEEecCCCCcc-cc----ccChHHHHHHHHHHHHHHHH----HHHHcC--CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 94 -EVDQIYHLACPASPI-FY----KYNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 94 -~~d~vi~~a~~~~~~-~~----~~~~~~~~~~nv~~~~~l~~----~a~~~~--~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.+|++||++|..... .. .++....+..|+.++..++. .+.+.+ ..+|++||...+
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------- 148 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------------- 148 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------------
Confidence 699999999743211 11 12223455667666655544 344433 389999986422
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCC
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGP 206 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~ 206 (343)
.+...|+.+|...+.+.+.++.+ +++++..+.||.+-.+
T Consensus 149 ------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 12356999999999988888765 4799999999988765
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-12 Score=110.61 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=111.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC------c---cchhhhcC--CCceEEEEcccCCcc-----
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------K---DNLKKWIG--HPRFELIRHDVTEPL----- 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------~---~~~~~~~~--~~~~~~~~~d~~~~~----- 91 (343)
.+|+++||||++.||.++++.|.+.| ++|+++.|+.... . +.+.+.+. ...+.++.+|+.++.
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 57899999999999999999999999 9999998863211 1 11111111 124678899999872
Q ss_pred -------cCCCCEEEEec-CCCC-----cccc---ccChHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEeCCcccCC
Q 019309 92 -------LIEVDQIYHLA-CPAS-----PIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYGD 150 (343)
Q Consensus 92 -------~~~~d~vi~~a-~~~~-----~~~~---~~~~~~~~~~nv~~~~~l~~~a~----~~~-~r~i~~SS~~v~~~ 150 (343)
+..+|++||+| |... .... ..+....++.|+.++..++.++. +.+ .++|++||......
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 23699999999 6321 1111 12234567788888777766654 333 38999998543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGP 206 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~ 206 (343)
. .+......|+.+|.....+.+.++.+. |+++..+.||++-.+
T Consensus 166 ~-------------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 166 A-------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred C-------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 0 011123469999999999988877654 689999999877544
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=100.95 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=118.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI------------E 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------~ 94 (343)
..+.+||||||+..||..|+++|++.| .+|+++.|+...-.+... ..+.+....+|+.|.... .
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~ 78 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPN 78 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence 356789999999999999999999999 999999985433332222 236788888999887422 5
Q ss_pred CCEEEEecCCCCccccc------cChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~------~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+++|||||........ ++..+.++.|..++..+..+.. +..- -+|.+||.-.+
T Consensus 79 lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf--------------- 143 (245)
T COG3967 79 LNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF--------------- 143 (245)
T ss_pred hheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc---------------
Confidence 89999999966432222 2234567889888888776664 3333 79999998776
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGP 206 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~ 206 (343)
-|......|..+|+....+...+..+ .+++++-+-|+.|-.+
T Consensus 144 -vPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 144 -VPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -CcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 35555567999999999877666544 4788999999888764
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-11 Score=102.84 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=128.0
Q ss_pred cCCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCCCCccch-----------hhhcC---CCceEEEEccc--C
Q 019309 27 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL-----------KKWIG---HPRFELIRHDV--T 88 (343)
Q Consensus 27 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-----------~~~~~---~~~~~~~~~d~--~ 88 (343)
..+|++||||| +.-||.++++.|.+.| .+|++ .|..+...... ..... ......+.+|+ .
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G-a~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG-AEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 57899999999 7999999999999999 98887 44211110000 00000 01135566777 2
Q ss_pred Cc------------------------------ccCCCCEEEEecCCCC----c--cccccChHHHHHHHHHHHHHHHHHH
Q 019309 89 EP------------------------------LLIEVDQIYHLACPAS----P--IFYKYNPVKTIKTNVIGTLNMLGLA 132 (343)
Q Consensus 89 ~~------------------------------~~~~~d~vi~~a~~~~----~--~~~~~~~~~~~~~nv~~~~~l~~~a 132 (343)
+. .+.++|++|||||... + ....++....+++|+.++..++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 1235999999996422 1 1123455677899999999988877
Q ss_pred HHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHhHHHHHHHHHHHHHHh----CCceEEEEecccc
Q 019309 133 KRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQH----GIQIRIARIFNTY 204 (343)
Q Consensus 133 ~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~~----~~~~~i~R~~~v~ 204 (343)
... +.++|++||..... +.... ..|+.+|...+.+.+.++.+. |+++..+.||.+-
T Consensus 165 ~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~ 228 (303)
T PLN02730 165 GPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLG 228 (303)
T ss_pred HHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCcc
Confidence 543 24899999976431 11112 359999999999999988753 6899999998887
Q ss_pred CCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+..... . ............ .++ ..+...+|++.++++++...
T Consensus 229 T~~~~~~-~-~~~~~~~~~~~~--~pl-------~r~~~peevA~~~~fLaS~~ 271 (303)
T PLN02730 229 SRAAKAI-G-FIDDMIEYSYAN--APL-------QKELTADEVGNAAAFLASPL 271 (303)
T ss_pred Cchhhcc-c-ccHHHHHHHHhc--CCC-------CCCcCHHHHHHHHHHHhCcc
Confidence 6542110 0 001111111111 111 12467899999999999754
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=94.64 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=140.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
+.+.++||||+.-||+++++.|.+.| ++|.+.++......+....+....+-..+.+|+.++. +..+
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p 91 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP 91 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC-cEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999 9999998865533333333333345566788888762 2359
Q ss_pred CEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV-------GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~-------~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++++||||..... ...++++..+..|+.+...+..++.+. +.++|.+||+---
T Consensus 92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGk---------------- 155 (256)
T KOG1200|consen 92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGK---------------- 155 (256)
T ss_pred cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcc----------------
Confidence 9999999976532 245677888899998887776666443 2279999996321
Q ss_pred CCCCCCCchHHhHHHH----HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 165 NPIGVRSCYDEGKRVA----ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~----E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
--...++.|..+|.-. ....++.++ .++++-.+.||+|-.|... .+-+..++++...-+...+
T Consensus 156 iGN~GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~----~mp~~v~~ki~~~iPmgr~-------- 222 (256)
T KOG1200|consen 156 IGNFGQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTE----AMPPKVLDKILGMIPMGRL-------- 222 (256)
T ss_pred cccccchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhh----hcCHHHHHHHHccCCcccc--------
Confidence 0112235577766532 233333333 4899999999999887621 2334556666655444433
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
=..+|+|..++.+..... +..+.+.++
T Consensus 223 -G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 223 -GEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred -CCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 345899999998885443 235555543
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=102.78 Aligned_cols=210 Identities=16% Similarity=0.130 Sum_probs=139.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPL----------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~----------- 91 (343)
..+|.++|||++.-||++++.+|.+.| .+|++..|..+...+....+.. ..++..+.+|+.+..
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999 9999999965443333322221 245788999998652
Q ss_pred --cCCCCEEEEecCCCCcc-----ccccChHHHHHHHHHH-HHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIG-TLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~-~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
+.++|+++|+||..... ...+.++..+++|+.+ ...+..++. +.+. .++++||...+..
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~-------- 156 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP-------- 156 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC--------
Confidence 34699999999966533 1234556778899884 454444443 3233 7888888865531
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
.+..+ ..|+.+|...+++.+..+.+ +|+++-.+-|+.|..+..... .......+.+.......++
T Consensus 157 ------~~~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p---- 225 (270)
T KOG0725|consen 157 ------GPGSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVP---- 225 (270)
T ss_pred ------CCCCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccc----
Confidence 11111 56999999999999988865 489999999998888751000 0011112222110111111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
.-.+...+|++.++..++....
T Consensus 226 ---~gr~g~~~eva~~~~fla~~~a 247 (270)
T KOG0725|consen 226 ---LGRVGTPEEVAEAAAFLASDDA 247 (270)
T ss_pred ---cCCccCHHHHHHhHHhhcCccc
Confidence 1235677999999999887653
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=107.91 Aligned_cols=205 Identities=19% Similarity=0.203 Sum_probs=137.7
Q ss_pred cCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------c-CCCCEEEE
Q 019309 36 GGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------L-IEVDQIYH 100 (343)
Q Consensus 36 Gat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~-~~~d~vi~ 100 (343)
|++ +-||.++++.|+++| ++|++++|+.......+..+......+++.+|+.++. . .++|++||
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 566 999999999999999 9999999864332222333333234557999998762 3 57999999
Q ss_pred ecCCCCc----cc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 101 LACPASP----IF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 101 ~a~~~~~----~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
+++.... .. ...+....++.|+.+...++.++.+. +.++|++||..... +...
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~----------------~~~~ 143 (241)
T PF13561_consen 80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR----------------PMPG 143 (241)
T ss_dssp EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS----------------BSTT
T ss_pred cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc----------------cCcc
Confidence 9986653 11 12344567788988888888887542 23799999986542 3333
Q ss_pred CCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
...|+.+|...+.+.+.++.+ +|+++-.+.||.+..+.... ......+.......-++. .+..++
T Consensus 144 ~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~--~~~~~~~~~~~~~~~pl~---------r~~~~~ 212 (241)
T PF13561_consen 144 YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER--IPGNEEFLEELKKRIPLG---------RLGTPE 212 (241)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH--HHTHHHHHHHHHHHSTTS---------SHBEHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc--cccccchhhhhhhhhccC---------CCcCHH
Confidence 457999999999988887753 57899999998887653100 000122333333332221 246889
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|+|++++.++.... .| .+.+.+|
T Consensus 213 evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred HHHHHHHHHhCccccCccCCeEEECCC
Confidence 99999999998653 44 5555443
|
... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=99.04 Aligned_cols=163 Identities=21% Similarity=0.186 Sum_probs=115.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhhhcC-C--CceEEEEcccCC-cc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKKWIG-H--PRFELIRHDVTE-PL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-~--~~~~~~~~d~~~-~~---------- 91 (343)
+.+|+||||||++-||..+++.|.++| +.|+++.|..... .+....... . ..+.+..+|+.+ ..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~ 81 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG-ARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE 81 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999 9988887754321 111111111 1 257778899987 42
Q ss_pred --cCCCCEEEEecCCCCc--cc---cccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~--~~---~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..++|++||+||.... .. ...+....+..|+.+...+..++...-. ++|.+||.... ...
T Consensus 82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~---------- 150 (251)
T COG1028 82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP---------- 150 (251)
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC----------
Confidence 2259999999997532 11 2245567788999988888775554444 89999998653 211
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGP 206 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~ 206 (343)
.. ...|+.+|...+.+.+.+..+ .|+++..+.||.+-.+
T Consensus 151 ----~~-~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 151 ----PG-QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ----CC-cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 00 357999999999888887744 5799999999955433
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=98.05 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=117.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC--------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------------- 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------- 93 (343)
.++-|||||+-.-+|..++++|.++| +.|.+-.... ...+.+......++...+..|+++++..
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~-~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~ 105 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTE-EGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED 105 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecC-chHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence 45779999999999999999999999 9999988432 3334444444467899999999987432
Q ss_pred CCCEEEEecCCCCc---cc--cccChHHHHHHHHHHHHHHHHHH----HHcCCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP---IF--YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~---~~--~~~~~~~~~~~nv~~~~~l~~~a----~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+...||||||.... .. .-++.....++|.-|+..+-.+. +++..|+|++||..- +
T Consensus 106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G--R-------------- 169 (322)
T KOG1610|consen 106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG--R-------------- 169 (322)
T ss_pred cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc--C--------------
Confidence 58899999995432 11 12355677889977777665544 566679999999753 1
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEec
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIF 201 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~ 201 (343)
.+.....+|+.||...|.+...+.++ +|+.+.++-||
T Consensus 170 ~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG 209 (322)
T KOG1610|consen 170 VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG 209 (322)
T ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 23334567999999999988777654 69999999998
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=101.34 Aligned_cols=188 Identities=13% Similarity=0.075 Sum_probs=122.3
Q ss_pred HHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc---------CCCCEEEEecCCCCccccccChH
Q 019309 45 LVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL---------IEVDQIYHLACPASPIFYKYNPV 115 (343)
Q Consensus 45 l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~d~vi~~a~~~~~~~~~~~~~ 115 (343)
+++.|.++| ++|++++|..... . ..+++.+|+.+... .++|+|||+||... ..+..
T Consensus 1 ~a~~l~~~G-~~Vv~~~r~~~~~----~------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~ 65 (241)
T PRK12428 1 TARLLRFLG-ARVIGVDRREPGM----T------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVE 65 (241)
T ss_pred ChHHHHhCC-CEEEEEeCCcchh----h------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHH
Confidence 478899999 9999999854321 0 13467889887621 25899999998642 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCC-----------CCCCCCCCCCchHHhHHHHH
Q 019309 116 KTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYW-----------GNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 116 ~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~-----------~~~~~~~~~~~Y~~~K~~~E 181 (343)
..+++|+.++..+++++.+. +.++|++||...|+.....+..|... ....+..+...|+.+|...+
T Consensus 66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~ 145 (241)
T PRK12428 66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALI 145 (241)
T ss_pred HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHH
Confidence 78999999999999998753 24999999999886432211111100 00023444578999999999
Q ss_pred HHHHHHH----HHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 182 TLMFDYH----RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 182 ~~~~~~~----~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
.+.+.++ ...|+++..++||.+.++.... .....-.........+ ...+...+|+|++++.++..
T Consensus 146 ~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~pe~va~~~~~l~s~ 214 (241)
T PRK12428 146 LWTMRQAQPWFGARGIRVNCVAPGPVFTPILGD----FRSMLGQERVDSDAKR-------MGRPATADEQAAVLVFLCSD 214 (241)
T ss_pred HHHHHHHHHhhhccCeEEEEeecCCccCccccc----chhhhhhHhhhhcccc-------cCCCCCHHHHHHHHHHHcCh
Confidence 9888777 3458999999999998875211 0000000000000001 11256789999999998864
Q ss_pred C
Q 019309 258 E 258 (343)
Q Consensus 258 ~ 258 (343)
.
T Consensus 215 ~ 215 (241)
T PRK12428 215 A 215 (241)
T ss_pred h
Confidence 3
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=96.55 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=114.8
Q ss_pred CCCEEEEEcC-chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------------C
Q 019309 28 SNMRILVTGG-AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------------I 93 (343)
Q Consensus 28 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~ 93 (343)
..++|||||+ +|.||.+|+++|.++| +.|.+..|+.+. ..++....++...+.|+.++.. .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~----M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEP----MAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccch----HhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 4578999975 6999999999999999 999999985433 3333334578889999987632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+.|+++|+||..-... ...+...++++|+-+..++.++.. +.+..+|++.|..+| -
T Consensus 81 kld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~----------------v 144 (289)
T KOG1209|consen 81 KLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV----------------V 144 (289)
T ss_pred ceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE----------------e
Confidence 5999999998432111 223445778999988888777765 344489999999887 3
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHH---HhCCceEEEEeccccC
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHR---QHGIQIRIARIFNTYG 205 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~---~~~~~~~i~R~~~v~G 205 (343)
|....+.|..+|++...+.+.+.- .+|++++.+-+|.|-.
T Consensus 145 pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 145 PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 555567899999999988876653 3467777777765543
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=101.31 Aligned_cols=175 Identities=19% Similarity=0.134 Sum_probs=123.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL----------- 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~----------- 91 (343)
...+++++|||||+-||.++++.|..+| .+|+...|+.....+....+ .....+.++.+|+.+..
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3466899999999999999999999999 99999999753333222222 22457788999999873
Q ss_pred -cCCCCEEEEecCCCCccc--cccChHHHHHHHHHHHHHHHHH----HHHcC-CeEEEEeCCcccCC--CCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGL----AKRVG-ARILLTSTSEVYGD--PLIHPQPETYW 161 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~----a~~~~-~r~i~~SS~~v~~~--~~~~~~~e~~~ 161 (343)
....|++|++||...... ..+..+..+.+|..+...|.+. +++.. .|+|++||..- +. .......|.
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~-- 187 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEK-- 187 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchh--
Confidence 236999999999776544 2234566788898877766554 45555 59999999764 11 111111111
Q ss_pred CCCCC-CCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCC
Q 019309 162 GNVNP-IGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPR 207 (343)
Q Consensus 162 ~~~~~-~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~ 207 (343)
.. ......|+.||.+......++.++. |+.+..+-||.+.++.
T Consensus 188 ---~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 188 ---AKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG 233 (314)
T ss_pred ---ccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence 11 1122249999999999888888775 6999999999998874
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=91.31 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=103.9
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chhhhc-CCCceEEEEcccCCccc------------CC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKKWI-GHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++||||+|-||..+++.|.+++..+|+++.|......+ .+..+. ....+.++.+|++|+.. ..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 589999999999999999999996789999997321211 111111 13478899999998732 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcc-cCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v-~~~~~~~~~~e~~~~~~~~~~ 168 (343)
++.|||+||...... ..++....+...+.++.+|.++...... .||.+||... +|. .
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~-----------------~ 144 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGG-----------------P 144 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT------------------T
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccC-----------------c
Confidence 899999998764322 1223345678889999999999998888 7899999875 432 2
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEecc
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFN 202 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~ 202 (343)
....|...-...+.+.+.... .|.++..+..+.
T Consensus 145 gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 145 GQSAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp TBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred chHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 346799999999998887655 489988887753
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=93.54 Aligned_cols=203 Identities=9% Similarity=0.001 Sum_probs=122.7
Q ss_pred CCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCC------CCC-ccch-hh--h---------------cCCCce
Q 019309 28 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYF------TGS-KDNL-KK--W---------------IGHPRF 80 (343)
Q Consensus 28 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~------~~~-~~~~-~~--~---------------~~~~~~ 80 (343)
.+|+++||||+ .-||.++++.|.++| ++|++.++.. ... .... .. . ......
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 68999999995 899999999999999 9998865421 000 0000 00 0 000011
Q ss_pred EEEEcccCC---------c-----------ccCCCCEEEEecCCCC---cc---ccccChHHHHHHHHHHHHHHHHHHHH
Q 019309 81 ELIRHDVTE---------P-----------LLIEVDQIYHLACPAS---PI---FYKYNPVKTIKTNVIGTLNMLGLAKR 134 (343)
Q Consensus 81 ~~~~~d~~~---------~-----------~~~~~d~vi~~a~~~~---~~---~~~~~~~~~~~~nv~~~~~l~~~a~~ 134 (343)
+-+..|+.+ . ...++|++||+||... .. ...++....+++|+.++..++.++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 112121111 1 1236999999997532 11 12234567789999999999888864
Q ss_pred c---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCC
Q 019309 135 V---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGP 206 (343)
Q Consensus 135 ~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~ 206 (343)
. +.++|.+||....- +.... ..|+.+|...+.+.+.++.+ +|+++..+.||.+-.+
T Consensus 166 ~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~ 229 (299)
T PRK06300 166 IMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASR 229 (299)
T ss_pred HhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccCh
Confidence 3 23788898865431 11111 25999999999999888865 3789999999988665
Q ss_pred CCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
..... . ............ .++ ......+|+++++.+++...
T Consensus 230 ~~~~~-~-~~~~~~~~~~~~--~p~-------~r~~~peevA~~v~~L~s~~ 270 (299)
T PRK06300 230 AGKAI-G-FIERMVDYYQDW--APL-------PEPMEAEQVGAAAAFLVSPL 270 (299)
T ss_pred hhhcc-c-ccHHHHHHHHhc--CCC-------CCCcCHHHHHHHHHHHhCcc
Confidence 31100 0 001111111111 111 12457899999999998754
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=91.70 Aligned_cols=199 Identities=19% Similarity=0.159 Sum_probs=133.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC---CceEEEEcccCCcc--------c----CC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH---PRFELIRHDVTEPL--------L----IE 94 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~--------~----~~ 94 (343)
.+|+|||++.-||..++..+..+| ++|+++.|+..+-.+..+.+... ..+.+..+|+.|.. + .-
T Consensus 34 ~hi~itggS~glgl~la~e~~~~g-a~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREG-ADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHcc-CceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 489999999999999999999999 99999999654433333332222 23558889996652 1 25
Q ss_pred CCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHHc----C-C-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~~----~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|.+|+|||...+....+ ......++|..++.+++.++... . . +++.+||....
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~---------------- 176 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM---------------- 176 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh----------------
Confidence 999999999776544443 33456789999999988776422 2 2 78889887653
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
-+....+.|..+|.+..-+.....++ +++.++..-|+..-.|+..- .-.........-. ...+.
T Consensus 177 ~~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~-----------En~tkP~~t~ii~--g~ss~ 243 (331)
T KOG1210|consen 177 LGIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFER-----------ENKTKPEETKIIE--GGSSV 243 (331)
T ss_pred cCcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccc-----------ccccCchheeeec--CCCCC
Confidence 24445567888888777666665544 47888888887777775211 1111111111111 22345
Q ss_pred eehHHHHHHHHHHHhcC
Q 019309 242 CYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~ 258 (343)
+..+++|++++.-+.+.
T Consensus 244 ~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMKRG 260 (331)
T ss_pred cCHHHHHHHHHhHHhhc
Confidence 88899999999888763
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=114.49 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=120.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------------------------------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-------------------------------------- 67 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-------------------------------------- 67 (343)
...++++|||||++.||..++++|.+++..+|+++.|+....
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~ 2073 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALV 2073 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcc
Confidence 446899999999999999999999998438999999862100
Q ss_pred -----ccc----hhhhcC-CCceEEEEcccCCccc-----------CCCCEEEEecCCCCccc----cccChHHHHHHHH
Q 019309 68 -----KDN----LKKWIG-HPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNV 122 (343)
Q Consensus 68 -----~~~----~~~~~~-~~~~~~~~~d~~~~~~-----------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv 122 (343)
... +..+.. ...+.++.+|++|... .++|.|||+||...... ..++....++.|+
T Consensus 2074 ~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv 2153 (2582)
T TIGR02813 2074 RPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKV 2153 (2582)
T ss_pred cccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHH
Confidence 000 000000 1357889999998631 25999999999654321 2345567899999
Q ss_pred HHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh-CCceEEEEe
Q 019309 123 IGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIARI 200 (343)
Q Consensus 123 ~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~-~~~~~i~R~ 200 (343)
.++.+++.++..... +||++||...+. .......|+.+|.....+.+.+..++ ++++..+.+
T Consensus 2154 ~G~~~Ll~al~~~~~~~IV~~SSvag~~----------------G~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~w 2217 (2582)
T TIGR02813 2154 DGLLSLLAALNAENIKLLALFSSAAGFY----------------GNTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNW 2217 (2582)
T ss_pred HHHHHHHHHHHHhCCCeEEEEechhhcC----------------CCCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEEC
Confidence 999999999987665 799999987542 12234569999999999888887765 578888888
Q ss_pred ccccCCC
Q 019309 201 FNTYGPR 207 (343)
Q Consensus 201 ~~v~G~~ 207 (343)
|.+-|..
T Consensus 2218 G~wdtgm 2224 (2582)
T TIGR02813 2218 GPWDGGM 2224 (2582)
T ss_pred CeecCCc
Confidence 8765543
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-10 Score=89.19 Aligned_cols=207 Identities=18% Similarity=0.154 Sum_probs=133.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chhhhcCCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKKWIGHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~------------~ 92 (343)
.||++++||+.|-||..+.+.|+++|...+.+..|.. +.+ .+.+..+...+-|+++|+++.. +
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E--n~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE--NPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh--CHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999944444444432 222 2344455678999999999862 2
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHH----HHHHHHHHHHcC-C---eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIG----TLNMLGLAKRVG-A---RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~----~~~l~~~a~~~~-~---r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
..+|++||.||... +.+.+..+.+|+.+ +...+.++.+.. . -+|..||..-.
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL---------------- 141 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL---------------- 141 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc----------------
Confidence 36999999999765 45566777777544 555677775543 2 69999997543
Q ss_pred CCCCCCCchHHhHHHHHHHHHH-----HHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc-CCCeEEec---CC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFD-----YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR-GEPLTVQK---PG 235 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~-----~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~ 235 (343)
+|..-...|+.+|.-.--+.++ +.++.|+++..++|+.+-. .+++.+-. +..+..-. +.
T Consensus 142 ~P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t------------~l~~~~~~~~~~~e~~~~~~~~ 209 (261)
T KOG4169|consen 142 DPMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRT------------DLAENIDASGGYLEYSDSIKEA 209 (261)
T ss_pred CccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchH------------HHHHHHHhcCCcccccHHHHHH
Confidence 3444456799999866544444 3355699999999964432 11111111 11111100 00
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCCCc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGENTG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~~~-~~~~~~~ 268 (343)
-....--...+++..++.++|...+| +|-+..+
T Consensus 210 l~~~~~q~~~~~a~~~v~aiE~~~NGaiw~v~~g 243 (261)
T KOG4169|consen 210 LERAPKQSPACCAINIVNAIEYPKNGAIWKVDSG 243 (261)
T ss_pred HHHcccCCHHHHHHHHHHHHhhccCCcEEEEecC
Confidence 00112344578999999999988766 5555544
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=84.21 Aligned_cols=165 Identities=18% Similarity=0.083 Sum_probs=109.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC-CCCCccchhhh-cCCCceEEEEcccCCcc--------------c
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKW-IGHPRFELIRHDVTEPL--------------L 92 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~-~~~~~~~~~~~-~~~~~~~~~~~d~~~~~--------------~ 92 (343)
-+.|+||||+..||-.|+++|++...-++++-.+. .+...+.+..+ ...+++.+++.|+++.+ .
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~ 82 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS 82 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence 35699999999999999999998764555555543 22222222221 23679999999998652 2
Q ss_pred CCCCEEEEecCCCCccccccC-----hHHHHHHHHHHHHHHHHHH-------HHc------CC---eEEEEeCCcccCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLA-------KRV------GA---RILLTSTSEVYGDP 151 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~-----~~~~~~~nv~~~~~l~~~a-------~~~------~~---r~i~~SS~~v~~~~ 151 (343)
.+.|.+|++||.......... ....++.|..++..+..++ ... .+ .+|++||.+.--.
T Consensus 83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~- 161 (249)
T KOG1611|consen 83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG- 161 (249)
T ss_pred CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC-
Confidence 369999999997653332222 2356778877666554433 211 12 4888998764210
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCC
Q 019309 152 LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGP 206 (343)
Q Consensus 152 ~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~ 206 (343)
. ....+...|..||.+.-...+...-+. ++-++.+.||||-..
T Consensus 162 -------~-----~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD 207 (249)
T KOG1611|consen 162 -------G-----FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD 207 (249)
T ss_pred -------C-----CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC
Confidence 0 234455679999999998888877553 578888999988653
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-09 Score=90.17 Aligned_cols=170 Identities=14% Similarity=0.031 Sum_probs=111.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-CCceEEEE-cccCC--cccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-HPRFELIR-HDVTE--PLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~d~~~--~~~~~~d~vi~~a 102 (343)
+++||.|+|++|.||+.++..|..++. .+++.+++. .......++.. .....+.. .|..+ .++.++|+||+++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 456999999999999999999986653 689999882 11111112111 11223321 12222 4677999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCC--CCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIH--PQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~--~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
|... ....+..+.+..|+..+.++++++++++. ++|+++|-.+-.-..-. .+.+. ....+...||.+-+-
T Consensus 85 G~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~-----sg~p~~~viG~g~LD 157 (321)
T PTZ00325 85 GVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKA-----GVYDPRKLFGVTTLD 157 (321)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhc-----cCCChhheeechhHH
Confidence 8643 22345678899999999999999999999 89999997653211000 01111 344555678776444
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
.-++-...++..++....++ ++|+|..
T Consensus 158 s~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 158 VVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred HHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 44555556667788888887 8888876
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-10 Score=86.02 Aligned_cols=198 Identities=19% Similarity=0.171 Sum_probs=136.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CC-ceEEEEcccCCccc--------CCCCE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HP-RFELIRHDVTEPLL--------IEVDQ 97 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~d~~~~~~--------~~~d~ 97 (343)
.|+.|++||+.-.||+.+++.|.+.| ..|+++.|.. ..+..+.. .+ -+..+.+|+.+-+. .-+|.
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aG-A~ViAvaR~~----a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidg 80 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAG-AQVIAVARNE----ANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDG 80 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcC-CEEEEEecCH----HHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhh
Confidence 68899999999999999999999999 9999999843 22222221 22 37788899976421 24899
Q ss_pred EEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
++|+||...... ...+.+..+++|+.+..++.... ...++ -+|.+||.+.. .+.
T Consensus 81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~----------------R~~ 144 (245)
T KOG1207|consen 81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI----------------RPL 144 (245)
T ss_pred hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc----------------ccc
Confidence 999998654222 22345566788888877776653 33333 59999998764 466
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHhC---CceEEEEeccccCCCC--CCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQHG---IQIRIARIFNTYGPRM--NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~~---~~~~i~R~~~v~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
...+.|..+|.+.+.+.+.++-+.| +++-.+-|..|..... ++.++. --+.++.. ++ .--|.
T Consensus 145 ~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~----K~k~mL~r--iP-------l~rFa 211 (245)
T KOG1207|consen 145 DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPD----KKKKMLDR--IP-------LKRFA 211 (245)
T ss_pred CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCch----hccchhhh--Cc-------hhhhh
Confidence 6778999999999998888887665 6777888888775421 111110 00111111 11 22377
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
.++.++.++..++....
T Consensus 212 EV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLSDNS 228 (245)
T ss_pred HHHHHHhhheeeeecCc
Confidence 88999999999987655
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=82.07 Aligned_cols=194 Identities=12% Similarity=0.026 Sum_probs=127.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC--------Cc---------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT--------EP--------- 90 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~--------~~--------- 90 (343)
+++-|||||+|--||..++..+.+++ .+...+.+...... ..++.+..+|.. +.
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed-~e~~r~g~~r~~a~--------~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~ 75 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAED-DEALRYGVARLLAE--------LEGLKVAYGDDFVHVVGDITEEQLLGALREA 75 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcc-hHHHHHhhhccccc--------ccceEEEecCCcceechHHHHHHHHHHHHhh
Confidence 56789999999999999999999998 65544433211111 134444444333 22
Q ss_pred ---ccCCCCEEEEecCCCCccc-------cccChHHHHHHHHHHHHHHHHHHH----HcCC--eEEEEeCCcccCCCCCC
Q 019309 91 ---LLIEVDQIYHLACPASPIF-------YKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLIH 154 (343)
Q Consensus 91 ---~~~~~d~vi~~a~~~~~~~-------~~~~~~~~~~~nv~~~~~l~~~a~----~~~~--r~i~~SS~~v~~~~~~~ 154 (343)
...+-|.|||+||...+.. ..+.+..+++.|+.....+...+. +..+ -+|++||.+.-
T Consensus 76 ~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav------ 149 (253)
T KOG1204|consen 76 PRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV------ 149 (253)
T ss_pred hhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh------
Confidence 1226999999999765422 223456788999888888777664 3322 58999998764
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCC-----CccHHHHHHHHHHcCC
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNID-----DGRVVSNFIAQALRGE 227 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~-----~~~~~~~~~~~~~~~~ 227 (343)
.|......|+-+|++.+.+++..+.+. ++.+..++||.|=.+.+-.. .+.-....++...+.+
T Consensus 150 ----------~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~ 219 (253)
T KOG1204|consen 150 ----------RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESG 219 (253)
T ss_pred ----------ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcC
Confidence 466667789999999999999998765 67888889987755432110 1111222333333322
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+++..+-++.+..++++.
T Consensus 220 ------------~ll~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 220 ------------QLLDPQVTAKVLAKLLEKG 238 (253)
T ss_pred ------------CcCChhhHHHHHHHHHHhc
Confidence 2455677888888888874
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=80.69 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=69.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhh-hcCCCceEEEEcccCCccc------------CCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK-WIGHPRFELIRHDVTEPLL------------IEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~------------~~~d 96 (343)
|+++|||||||+|. +++.|.+.| ++|++++|+... ...+.. ......+.++.+|+.|+.. ..+|
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~R~~~~-~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id 77 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIARREVK-LENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFD 77 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEECCHHH-HHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence 68999999998876 999999999 999999885322 111111 1112467888999988632 2578
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCe-----EEEEeCCc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-----ILLTSTSE 146 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r-----~i~~SS~~ 146 (343)
.+|+.+ ++.++.++..+|++.+++ |+|+=+..
T Consensus 78 ~lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 78 LAVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred EEEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 888765 444577899999999875 88866543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-08 Score=76.33 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=57.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
+.++.++||||+|.||..+++.|.++| ++|++++|..+........... ...+.++.+|+.+.. +.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999 9999998753221111111111 234667889998752 23
Q ss_pred CCCEEEEecCCCC
Q 019309 94 EVDQIYHLACPAS 106 (343)
Q Consensus 94 ~~d~vi~~a~~~~ 106 (343)
++|++||+||...
T Consensus 93 ~iDilVnnAG~~~ 105 (169)
T PRK06720 93 RIDMLFQNAGLYK 105 (169)
T ss_pred CCCEEEECCCcCC
Confidence 6999999998654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-07 Score=79.48 Aligned_cols=170 Identities=11% Similarity=-0.033 Sum_probs=112.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-CCceEEEE-cccC--CcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-HPRFELIR-HDVT--EPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~d~~--~~~~~~~d~vi~~a~~ 104 (343)
.||.|+|++|.||+.++..|..++. .++.++++.. ......++.. .....+.. .+-. -.++.++|+||++||.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 6899999999999999999997773 4788888754 1111112111 11122221 1211 1367899999999986
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
... ...+..+.+..|...+.++++.+.+++. .+|+++|--+-+... .... .........|...||.+++-.+++
T Consensus 97 ~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~--i~t~-~~~~~s~~p~~~viG~~~LDs~Rl 171 (323)
T PLN00106 97 PRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVP--IAAE-VLKKAGVYDPKKLFGVTTLDVVRA 171 (323)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHH--HHHH-HHHHcCCCCcceEEEEecchHHHH
Confidence 432 2345678899999999999999999998 788777743311000 0000 000113455667899999999999
Q ss_pred HHHHHHHhCCceEEEEeccccCCC
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
-..++++.+++..-+. ++|+|..
T Consensus 172 ~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 172 NTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred HHHHHHHhCCChhheE-EEEEEeC
Confidence 8889888898888775 4566654
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=79.79 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=108.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC--CceEEEEcccCCccc-----------CCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH--PRFELIRHDVTEPLL-----------IEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~-----------~~~ 95 (343)
+.=..|||||..||.+.+++|.++| .+|.++.|..++-....++..+. -.++++..|+++... .++
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 4558999999999999999999999 99999999654433333333332 347788889987642 258
Q ss_pred CEEEEecCCCCc--cccccCh----HHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASP--IFYKYNP----VKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~--~~~~~~~----~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
-++|||+|.... ...-+.+ ...+.+|+.++..+.+. +.+.+. -+|.+||..--
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~---------------- 191 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL---------------- 191 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc----------------
Confidence 889999986541 1111111 23345565554444333 333333 79999997532
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
.|....+.|+.+|...+.....+..+ .|+.+-.+-|..|-++.
T Consensus 192 ~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 192 IPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 34445577999999888766666554 37888888888777764
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-08 Score=61.93 Aligned_cols=59 Identities=29% Similarity=0.428 Sum_probs=39.9
Q ss_pred HHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 279 TVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 279 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
++.++.|.+.++.+.+..+.+....+.|.+|++++|||+|+++++|++++..+|+.++-
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHST
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCc
Confidence 46788999999999999999999999999999999999999999999999999987653
|
... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=81.53 Aligned_cols=95 Identities=27% Similarity=0.333 Sum_probs=71.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLAC 103 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~ 103 (343)
+|+|||+|+ |+||+.++..|.+++..+|++.+|+...-... ... ...+++....|..|. .+.+.|+|||++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i-~~~-~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARI-AEL-IGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHH-Hhh-ccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 489999998 99999999999999988999999953222111 111 123789999999876 3457899999985
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+.. ...++++|.++|+.++=+|=
T Consensus 78 ~~~------------------~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 78 PFV------------------DLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred chh------------------hHHHHHHHHHhCCCEEEccc
Confidence 332 23799999999998887663
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=78.81 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=113.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC------eEEEEecCCCC--CccchhhhcCC-----CceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN------EVIVADNYFTG--SKDNLKKWIGH-----PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~d 96 (343)
+||.|+|++|.+|++++..|...+.. ++++++..... ......++... .++++..+| ..++.++|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daD 80 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP--NVAFKDAD 80 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc--HHHhCCCC
Confidence 68999999999999999999988742 68888874322 11111111110 123333221 24677899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeCCc---ccCCCCCCCCCCCCCCCCCC-CCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSE---VYGDPLIHPQPETYWGNVNP-IGV 169 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS~~---v~~~~~~~~~~e~~~~~~~~-~~~ 169 (343)
+||.+||... ....+..+.+..|+.-...+.....+++ - .+|.+|-.. +|-. ... .+ ..+
T Consensus 81 ivvitaG~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-----~k~------sg~~p~ 147 (322)
T cd01338 81 WALLVGAKPR--GPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA-----MKN------APDIPP 147 (322)
T ss_pred EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH-----HHH------cCCCCh
Confidence 9999998643 2334667788999999999999998876 2 566666421 0100 000 22 344
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
...||.+++..+++...+++..+++...+|..+|||+.
T Consensus 148 ~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 148 DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 56799999999999999999999999999999999987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-07 Score=74.23 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=50.1
Q ss_pred CCCEEEEEcCc----------------hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEc--ccCC
Q 019309 28 SNMRILVTGGA----------------GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRH--DVTE 89 (343)
Q Consensus 28 ~~~~ilItGat----------------G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--d~~~ 89 (343)
.||+||||+|. ||+|++|+++|+++| ++|+++++.......... ....+..+.+ |+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G-a~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~ 77 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG-AHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQD 77 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC-CeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHH
Confidence 68999999886 999999999999999 999998864221111111 1122334455 4433
Q ss_pred c---cc--CCCCEEEEecCCC
Q 019309 90 P---LL--IEVDQIYHLACPA 105 (343)
Q Consensus 90 ~---~~--~~~d~vi~~a~~~ 105 (343)
. .+ .++|+|||+|+..
T Consensus 78 ~l~~~~~~~~~D~VIH~AAvs 98 (229)
T PRK09620 78 KMKSIITHEKVDAVIMAAAGS 98 (229)
T ss_pred HHHHHhcccCCCEEEECcccc
Confidence 2 22 3689999999864
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=74.09 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=72.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC------CeEEEEecCCCCC-ccc-hhhhcC-----CCceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK------NEVIVADNYFTGS-KDN-LKKWIG-----HPRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~-~~~-~~~~~~-----~~~~~~~~~d~~~~~~~~~d 96 (343)
.+|+|+||+|++|++++..|+..+. .+++++++..... .+. ..++.. ..++.. ..| ...++.++|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~-~~~-~~~~l~~aD 80 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA-TTD-PEEAFKDVD 80 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee-cCC-HHHHhCCCC
Confidence 5799999999999999999998552 4899998843211 111 111110 001110 111 113567899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 144 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS 144 (343)
+|||+||... ....+..+.++.|+.-...++....++. . .+|.+|.
T Consensus 81 iVI~tAG~~~--~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 81 VAILVGAMPR--KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEEEeCCcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999998653 2344567889999999999988888873 2 5666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-07 Score=68.99 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=128.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++...|||||..-+|...++.|.+.| ..|.+++....+..+..+++. .++.+...|++.+. +.+.
T Consensus 8 kglvalvtggasglg~ataerlakqg-asv~lldlp~skg~~vakelg--~~~vf~padvtsekdv~aala~ak~kfgrl 84 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQG-ASVALLDLPQSKGADVAKELG--GKVVFTPADVTSEKDVRAALAKAKAKFGRL 84 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcC-ceEEEEeCCcccchHHHHHhC--CceEEeccccCcHHHHHHHHHHHHhhccce
Confidence 56678999999999999999999999 999999875544444444432 47889999998652 3369
Q ss_pred CEEEEecCCCCccc----------cccChHHHHHHHHHHHHHHHHHHHH---------cCCe--EEEEeCCcccCCCCCC
Q 019309 96 DQIYHLACPASPIF----------YKYNPVKTIKTNVIGTLNMLGLAKR---------VGAR--ILLTSTSEVYGDPLIH 154 (343)
Q Consensus 96 d~vi~~a~~~~~~~----------~~~~~~~~~~~nv~~~~~l~~~a~~---------~~~r--~i~~SS~~v~~~~~~~ 154 (343)
|+.+||||...... .-.+....+++|+.++.++++.... .|.| +|.+.|..+|.
T Consensus 85 d~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd----- 159 (260)
T KOG1199|consen 85 DALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD----- 159 (260)
T ss_pred eeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec-----
Confidence 99999998653211 1123445678899999998875531 1224 66677777663
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHH----HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeE
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAET----LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLT 230 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~----~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (343)
-...+..|..+|...-- ..++++.+ |+++..+-|+..-.|-. ..++.-+..++.. .++
T Consensus 160 -----------gq~gqaaysaskgaivgmtlpiardla~~-gir~~tiapglf~tpll-----sslpekv~~fla~-~ip 221 (260)
T KOG1199|consen 160 -----------GQTGQAAYSASKGAIVGMTLPIARDLAGD-GIRFNTIAPGLFDTPLL-----SSLPEKVKSFLAQ-LIP 221 (260)
T ss_pred -----------CccchhhhhcccCceEeeechhhhhcccC-ceEEEeecccccCChhh-----hhhhHHHHHHHHH-hCC
Confidence 33344568888876543 33444333 78888888876544431 1112222222222 122
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
++. -+-|..+.+..+-.+++++-
T Consensus 222 fps------rlg~p~eyahlvqaiienp~ 244 (260)
T KOG1199|consen 222 FPS------RLGHPHEYAHLVQAIIENPY 244 (260)
T ss_pred Cch------hcCChHHHHHHHHHHHhCcc
Confidence 211 24466777888888888876
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.8e-06 Score=71.49 Aligned_cols=112 Identities=19% Similarity=0.074 Sum_probs=75.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHh-cCC-CeEEEEecCCCCCccchhhhcCCCceEEEEc-ccCC--cccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLME-NEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRH-DVTE--PLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~-~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~d~vi~~a~~ 104 (343)
|||+|+||+|.+|++++..|.. .+. +++++++|... ......++........+.+ +..+ ..+.++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 7999999999999999998855 331 67888887532 1111112211121122222 1222 456789999999986
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS 144 (343)
.. ....+..+.+..|......+++++.+++. ++|.+.|
T Consensus 80 ~~--~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 80 AR--KPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 43 22345677889999999999999999988 6666666
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-06 Score=68.66 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=109.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC----CeEEEEecCCCCCccchhhhc---C--CCceEEEEcccCCcc------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK----NEVIVADNYFTGSKDNLKKWI---G--HPRFELIRHDVTEPL------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~----~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~d~~~~~------ 91 (343)
||.|.+||||++..||-.|+.+|++... ..+++.+|+.++..+...++. + ..+++++..|+.+..
T Consensus 1 ~~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~ 80 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRAS 80 (341)
T ss_pred CCceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHH
Confidence 4668899999999999999999999872 235566776544333333332 2 236788999998753
Q ss_pred ------cCCCCEEEEecCCCCccc--c-----------------------------ccChHHHHHHHHHHHHHHHHHHHH
Q 019309 92 ------LIEVDQIYHLACPASPIF--Y-----------------------------KYNPVKTIKTNVIGTLNMLGLAKR 134 (343)
Q Consensus 92 ------~~~~d~vi~~a~~~~~~~--~-----------------------------~~~~~~~~~~nv~~~~~l~~~a~~ 134 (343)
+...|.|+-+||...... + .++-.+.++.||-|.-.+++....
T Consensus 81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p 160 (341)
T KOG1478|consen 81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP 160 (341)
T ss_pred HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence 236999999998543211 0 122246788899888888776653
Q ss_pred c----CC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccC
Q 019309 135 V----GA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYG 205 (343)
Q Consensus 135 ~----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G 205 (343)
. .. ++|.+||..+-. .. --.|| + ......-+|..||++.+.+-....+. .|+.--++.||....
T Consensus 161 ll~~~~~~~lvwtSS~~a~k--k~-lsleD-~---q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 161 LLCHSDNPQLVWTSSRMARK--KN-LSLED-F---QHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred HhhcCCCCeEEEEeeccccc--cc-CCHHH-H---hhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 3 23 799999976421 11 11122 1 23334456999999998776655543 245555666654443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=60.19 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=60.5
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
||.|+||||++|+.|++.|.+....++..+..........+..... ...+.+.. .....+.++|+||.|.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dvvf~a~~~-- 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEELSDVDVVFLALPH-- 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHHHTTESEEEE-SCH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhHhhcCCEEEecCch--
Confidence 6999999999999999999997756655554433212222222211 11233333 333445789999998731
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.....+...+.+.|+++|=.|+..-
T Consensus 77 ----------------~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 77 ----------------GASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp ----------------HHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred ----------------hHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 1134566677888888888887653
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=61.82 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=75.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|||.|+|++|.+|++++..|...+. .+++++++..........++ .........-..-...++.++|+||.++|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 7999999999999999999999984 57999987532111111111 1111222222222334567899999999854
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
. ....+..+.+..|..-...+++...+.+- .++.+|
T Consensus 81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 2 33456678889999999999999998875 555554
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-06 Score=75.31 Aligned_cols=88 Identities=27% Similarity=0.289 Sum_probs=62.8
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
|+|+|+ |++|+.+++.|.+++.+ +|++.+|+. +.+.... ...+++....|+.|.. +.++|+||||+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP----EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH----HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH----HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 799999 99999999999999855 899999843 2222222 3468999999999863 45899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 142 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~ 142 (343)
++.. ...++++|.+.|+++|=+
T Consensus 76 gp~~------------------~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 76 GPFF------------------GEPVARACIEAGVHYVDT 97 (386)
T ss_dssp SGGG------------------HHHHHHHHHHHT-EEEES
T ss_pred ccch------------------hHHHHHHHHHhCCCeecc
Confidence 7541 236889999998887763
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.2e-06 Score=69.08 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=44.0
Q ss_pred cCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-------ccCCCCEEEEecCCCC
Q 019309 36 GGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 36 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~vi~~a~~~~ 106 (343)
.+|||+|.+|+++|+++| ++|+++.|...... ....+++++.++..+. .+.++|+|||+||...
T Consensus 23 ~SSG~iG~aLA~~L~~~G-~~V~li~r~~~~~~------~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd 93 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAG-HEVTLVTTKTAVKP------EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD 93 (229)
T ss_pred ccchHHHHHHHHHHHhCC-CEEEEEECcccccC------CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence 569999999999999999 99999987421110 0113566655443321 2347999999998653
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=70.93 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=64.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEE-EcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELI-RHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~-~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.++|+|.|.||||++|+.|++.|.++...+++.+.+..... +.+..... ....+.. ..++....+.++|+||.+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 46789999999999999999999999657899887632111 11111100 0000111 112222234679999987642
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
. ....++..+ +.++++|-+|+.+.+.+
T Consensus 115 ~------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 115 G------------------TTQEIIKAL-PKDLKIVDLSADFRLRD 141 (381)
T ss_pred H------------------HHHHHHHHH-hCCCEEEEcCchhccCC
Confidence 1 234566665 45779999999987654
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=67.21 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-c------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-L------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~d~vi~~a 102 (343)
|+|||+||||. |+.|++.|.+.| ++|++..+...... .+. ......+. .+..+. . ..++|+||+++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~-~~~---~~g~~~v~-~g~l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKH-LYP---IHQALTVH-TGALDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCccc-ccc---ccCCceEE-ECCCCHHHHHHHHHhcCCCEEEEcC
Confidence 78999999999 999999999999 99999988543221 111 11122333 333333 2 22699999988
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
-+. -.....++.++|++.++.++=
T Consensus 74 HPf---------------A~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 74 HPF---------------AAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred CHH---------------HHHHHHHHHHHHHHhCCcEEE
Confidence 432 123467899999999986554
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0001 Score=65.57 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=54.3
Q ss_pred cCCCEEEEEcCchhHHHH--HHHHHHhcCCCeEEEEecCCCCCc-----------cchhhhcCC--CceEEEEcccCCcc
Q 019309 27 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVADNYFTGSK-----------DNLKKWIGH--PRFELIRHDVTEPL 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~~~--~~~~~~~~d~~~~~ 91 (343)
..+|++||||+++-+|.+ +++.| +.| ..|+++++...... ......... ..+..+.+|+++++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 456999999999999999 89999 999 88888875321111 112222221 23567899999862
Q ss_pred ------------cCCCCEEEEecCCC
Q 019309 92 ------------LIEVDQIYHLACPA 105 (343)
Q Consensus 92 ------------~~~~d~vi~~a~~~ 105 (343)
+.++|++||++|..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 23699999999854
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=71.24 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
+|+|+|.||||++|+.|++.|.++++ .++.++.+..... +.+. ..+.+....|+.+..+.++|+||.+.+..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g-~~l~----~~g~~i~v~d~~~~~~~~vDvVf~A~g~g- 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG-KELS----FKGKELKVEDLTTFDFSGVDIALFSAGGS- 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC-Ceee----eCCceeEEeeCCHHHHcCCCEEEECCChH-
Confidence 47999999999999999999999772 2557776542111 1111 12234444566555556899999887522
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
....++....+.|+++|=+||..-+
T Consensus 75 -----------------~s~~~~~~~~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 75 -----------------VSKKYAPKAAAAGAVVIDNSSAFRM 99 (334)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCchhhc
Confidence 1234555566677777777877544
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=69.94 Aligned_cols=101 Identities=12% Similarity=0.180 Sum_probs=61.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----------CceEEEEcccCCcccCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----------PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~d 96 (343)
||+++|+|+||||++|+.|++.|.+....+++.+.++.............. ..+.+...|. ..+.++|
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~D 78 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVD 78 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCC
Confidence 456899999999999999999999887458888744322211112111100 1122222221 1234789
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
+|+.+... + ....+++.+.+.|+++|-.|+.+-
T Consensus 79 vVf~a~p~----------------~--~s~~~~~~~~~~G~~vIDls~~fR 111 (349)
T PRK08664 79 IVFSALPS----------------D--VAGEVEEEFAKAGKPVFSNASAHR 111 (349)
T ss_pred EEEEeCCh----------------h--HHHHHHHHHHHCCCEEEECCchhc
Confidence 99876531 1 123455777778888888887654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.5e-05 Score=65.88 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=73.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCC------eEEEEecCC--CCCccchhhhcC-----CCceEEEEcccCCcccCCCCE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKN------EVIVADNYF--TGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQ 97 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~--~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~ 97 (343)
||.|+||+|.+|+.++..|...+.. +++.+++.. +.......++.. ...+++. .+ ....+.++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~-~~-~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT-TD-PEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe-cC-hHHHhCCCCE
Confidence 7999999999999999999987632 488888754 211111111111 0112221 21 2346678999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEe
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTS 143 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~S 143 (343)
|||+||... ....+..+.+..|+.-...++....++. - .+|.+|
T Consensus 80 VVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 80 AILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999998643 3345667888999999999999999884 4 566665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=63.56 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=74.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCC--CCCccchhhhcC---CC--ceEEEE-cccCCcccCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYF--TGSKDNLKKWIG---HP--RFELIR-HDVTEPLLIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~--~~~~~~~~~~~~---~~--~~~~~~-~d~~~~~~~~~d~vi~ 100 (343)
|+|.|+|++|++|..++..|...|. .+|++++|.. +.......++.+ .. ..++.. .| ...+.++|+||.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 7899999999999999999999983 2599999843 111111111111 11 123322 23 235789999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 145 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~ 145 (343)
++|... ....+..+....|......+++...+.+. ++|.+++.
T Consensus 79 tag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 79 TAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 998532 22234467778899999999998887754 67777764
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-05 Score=67.95 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
+++|.|+||||++|+.|++.|.++++ .++..+... ....+.+. +....+.+...| ...+.++|++|.+.+..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~--~~~~~l~~~~~~--~~~~~~vD~vFla~p~~- 77 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP--FAGKNLRVREVD--SFDFSQVQLAFFAAGAA- 77 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec--cCCcceEEeeCC--hHHhcCCCEEEEcCCHH-
Confidence 37999999999999999999998762 233344321 11111111 111123333222 22346899999876311
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
....++..+.+.|+++|=.||.+-+
T Consensus 78 -----------------~s~~~v~~~~~~G~~VIDlS~~fR~ 102 (336)
T PRK05671 78 -----------------VSRSFAEKARAAGCSVIDLSGALPS 102 (336)
T ss_pred -----------------HHHHHHHHHHHCCCeEEECchhhcC
Confidence 1234777888889999999998865
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=54.03 Aligned_cols=211 Identities=15% Similarity=0.113 Sum_probs=126.0
Q ss_pred ccCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCC-ceEEEEcccCCcc-----------
Q 019309 26 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHP-RFELIRHDVTEPL----------- 91 (343)
Q Consensus 26 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~----------- 91 (343)
++.||++||+|-. --|+-.|++.|.+.| .++......+ .-...+.++.+.. ..-+++||+.+.+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~G-AeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~ 80 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQG-AELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK 80 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcC-CEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence 4679999999965 468999999999999 8877776532 1222223332222 3456899998763
Q ss_pred -cCCCCEEEEecCCCCccccc--------cChHHHHHHHHHHHHHHHHHHHHc---CCeEE---EEeCCcccCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYK--------YNPVKTIKTNVIGTLNMLGLAKRV---GARIL---LTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~--------~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i---~~SS~~v~~~~~~~~~ 156 (343)
..+.|.++|+.+..+-.... +......++.......+.++++.. |.-+| |..|..+
T Consensus 81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~--------- 151 (259)
T COG0623 81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERV--------- 151 (259)
T ss_pred hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceee---------
Confidence 23699999999866522111 122334455566666677776632 32343 4443322
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC---CceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEE
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG---IQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~---~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~ 231 (343)
.+..+.-|..|...|..++.++.+.| +++--+-. ||-..-.. -..+..+++......++
T Consensus 152 ----------vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISA----GPIrTLAasgI~~f~~~l~~~e~~aPl-- 215 (259)
T COG0623 152 ----------VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISA----GPIRTLAASGIGDFRKMLKENEANAPL-- 215 (259)
T ss_pred ----------cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecc----cchHHHHhhccccHHHHHHHHHhhCCc--
Confidence 22235689999999999999887765 44443333 44322111 12233444433333322
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
...+..+|++...+.++..-. +++.|+-+|-.
T Consensus 216 -------~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 216 -------RRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred -------cCCCCHHHhhhhHHHHhcchhcccccceEEEcCCce
Confidence 234668999999988887543 44667766543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-05 Score=70.72 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
+.+|+|+|+|+++ +|..+++.|.++| ++|+++++.....-+.....+...+++++.+|..+....++|+||+++|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 3579999999888 9999999999999 99999988532111111122233467888888887666689999999874
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-05 Score=66.18 Aligned_cols=102 Identities=12% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCce-EEEEcccCCcccCCCCEEEEecCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRF-ELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~-~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
+|+|+|+||||++|+.+++.|.+....+++++.+.. ...+.+..... .... ....-++.+....++|+||.|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~- 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG- 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-
Confidence 489999999999999999999988547777766521 11111221111 0110 1111122222345799999876321
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
....++..+.+.|+++|=.|+.+-+.
T Consensus 80 -----------------~~~~~v~~a~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 80 -----------------VSMDLAPQLLEAGVKVIDLSADFRLK 105 (343)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCcccCCC
Confidence 12456667777888999999987664
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=65.17 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=62.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecC-CCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
-.+++|.|.||||++|+.|++.|.++++ .++..+... ..+.. . ...+.+....++....+.++|+||.+++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--~----~~~~~~~~v~~~~~~~~~~~D~vf~a~p 78 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--V----TFEGRDYTVEELTEDSFDGVDIALFSAG 78 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--e----eecCceeEEEeCCHHHHcCCCEEEECCC
Confidence 3568999999999999999999999772 244444321 11111 1 1112233333444345568999998875
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
... ...++..+.+.|+++|=.|+.+-+.+
T Consensus 79 ~~~------------------s~~~~~~~~~~g~~VIDlS~~fR~~~ 107 (344)
T PLN02383 79 GSI------------------SKKFGPIAVDKGAVVVDNSSAFRMEE 107 (344)
T ss_pred cHH------------------HHHHHHHHHhCCCEEEECCchhhcCC
Confidence 221 23455566667889999999876543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.5e-05 Score=63.92 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=51.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCc-----ccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEP-----LLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-----~~~~~d~vi~ 100 (343)
..+++++|+||+|.+|+.+++.|.+.| ++|+++.|+... .+.+...+. ..+..+...|..+. .+.++|+||+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLER-AQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHH-HHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 367899999999999999999999999 899999885322 112221111 12344445555443 3557999998
Q ss_pred ecC
Q 019309 101 LAC 103 (343)
Q Consensus 101 ~a~ 103 (343)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 763
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=55.45 Aligned_cols=96 Identities=22% Similarity=0.346 Sum_probs=55.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCC-CCccchhhhcC--CCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFT-GSKDNLKKWIG--HPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~-~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|||.|.|++|.+|+.+++.+.+....++.+. +|... ........... ..++.+. -|+ +..+..+|++|.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-~~l-~~~~~~~DVvIDfT--- 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-DDL-EELLEEADVVIDFT--- 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-S-H-HHHTTH-SEEEEES---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-hhH-HHhcccCCEEEEcC---
Confidence 6899999999999999999999543665554 44321 11111111111 1122211 222 33344599999886
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+-..+...++.|.++++.+|.-+|.
T Consensus 76 ---------------~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 76 ---------------NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp ----------------HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred ---------------ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 2233556888899999887765554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00038 Score=61.33 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.++||.|+|+ |.+|+.++..|...+. .+++++++..........++... ..+.+...|. .++.++|+||.++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~--~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY--SDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH--HHhCCCCEEEEec
Confidence 4579999997 9999999999999983 27999988543322222222111 2344443332 3578999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
|... ....+..+.+..|..-...+++...+++. ++|.+|
T Consensus 82 g~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 82 GAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 8642 23345667889999999999999998775 666655
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00055 Score=59.91 Aligned_cols=162 Identities=12% Similarity=-0.036 Sum_probs=97.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC-CceEEEEcccC---CcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH-PRFELIRHDVT---EPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~---~~~~~~~d~vi~~a~~ 104 (343)
|||.|+|++|.+|++++..|...+. .++++++.. .......++... ....+....-. -.++.++|+||.+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 6899999999999999999988884 478888875 111112222221 12233321111 2467899999999986
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCc-------ccCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSE-------VYGDPLIHPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~-------v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
.. ....+..+.+..|..-...+++...+++- .+|.+|-.. .|--.. . ....+....|.
T Consensus 79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~-----~------s~~p~~rviG~ 145 (310)
T cd01337 79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKK-----A------GVYDPKRLFGV 145 (310)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHH-----h------cCCCHHHEEee
Confidence 42 23456678899999999999999988875 566666543 110000 0 11111112333
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
.-+-.-++-...++..+++..-++ ++|+|..
T Consensus 146 ~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 146 TTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred echHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 223333444444555677766676 7788865
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.1e-05 Score=69.24 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=47.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC--CcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT--EPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~d~vi~~a~ 103 (343)
..+++|+||||+|+||+.++++|.++ +..+++++.|.... ...+...+. .+++. +..+.++|+|||+++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el~-------~~~i~~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAELG-------GGKILSLEEALPEADIVVWVAS 224 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHhc-------cccHHhHHHHHccCCEEEECCc
Confidence 36799999999999999999999865 54688888874321 111111111 12221 234568999999997
Q ss_pred CC
Q 019309 104 PA 105 (343)
Q Consensus 104 ~~ 105 (343)
..
T Consensus 225 ~~ 226 (340)
T PRK14982 225 MP 226 (340)
T ss_pred CC
Confidence 53
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00029 Score=62.94 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=60.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC------CCc--eEEEEcccCCcccCCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG------HPR--FELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~~~--~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
|+|.|+|++|++|++|++.|.+++..++..+.+.............. ... .+..-.++......++|+|+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999999999999999999887745777774332111111111111 000 1111112222234579999988
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
... ++ ...+...+.+.|+++|..|+.+-+.
T Consensus 81 ~p~----------------~~--s~~~~~~~~~~G~~VIDlsg~fR~~ 110 (341)
T TIGR00978 81 LPS----------------EV--AEEVEPKLAEAGKPVFSNASNHRMD 110 (341)
T ss_pred CCH----------------HH--HHHHHHHHHHCCCEEEECChhhccC
Confidence 731 11 2234567777888999999887654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=66.68 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=50.5
Q ss_pred cCCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc
Q 019309 27 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 27 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 90 (343)
+.+++|||||| ||.+|.+++++|.++| ++|+++.+... ... . .++ ...|+.+.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G-a~V~~v~~~~~-----~~~--~-~~~--~~~dv~~~ 254 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG-ADVTLVSGPVN-----LPT--P-AGV--KRIDVESA 254 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC-CEEEEeCCCcc-----ccC--C-CCc--EEEccCCH
Confidence 47899999999 9999999999999999 99999987431 110 1 122 23455442
Q ss_pred ---------ccCCCCEEEEecCCCC
Q 019309 91 ---------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ---------~~~~~d~vi~~a~~~~ 106 (343)
.+.++|++||+||...
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVAD 279 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEcccccc
Confidence 2346999999998653
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00024 Score=62.71 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=63.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcC--CCeEEEEecC-CCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+.+++|.|.||||++|+.|++.|.++. ..++..+... ..++.-. +....+.+. ++.+..+.++|++|.+++
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~----~~~~~~~v~--~~~~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR----FGGKSVTVQ--DAAEFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE----ECCcceEEE--eCchhhccCCCEEEECCC
Confidence 467999999999999999999999953 2466666432 1111111 111123333 443333467999998874
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
.. ....++..+.+.|+++|=.|+.+-+.+
T Consensus 76 ~~------------------~s~~~~~~~~~~g~~VIDlS~~fRl~~ 104 (336)
T PRK08040 76 RE------------------ASAAYAEEATNAGCLVIDSSGLFALEP 104 (336)
T ss_pred HH------------------HHHHHHHHHHHCCCEEEECChHhcCCC
Confidence 21 133566667778889999999886544
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=63.46 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=61.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcC---C-CceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIG---H-PRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~---~-~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|+|.|+||||++|+.+++.|.+....+++.+ ++.. ...+.+..... . ....+...|..+ ...++|+||.|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~-sagk~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE-SAGKPVSEVHPHLRGLVDLNLEPIDEEE-IAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch-hcCCChHHhCccccccCCceeecCCHHH-hhcCCCEEEECCCc
Confidence 6899999999999999999998864677744 4321 11111211111 0 012222222211 12379999988732
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
. ....++..+.+.|+++|=.|+.+-+.
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 79 G------------------VSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred h------------------HHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 1 13456777777888999999987654
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=65.13 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=59.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCe---EEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNE---VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
+|+|.||||++|+.|++.|.+++ |. +..+.+.... ...+. ..+.+....|+....+.++|+||.+++...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~-hp~~~l~~~as~~~~-g~~~~----~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~- 73 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN-FPIDKLVLLASDRSA-GRKVT----FKGKELEVNEAKIESFEGIDIALFSAGGSV- 73 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC-CChhhEEEEeccccC-CCeee----eCCeeEEEEeCChHHhcCCCEEEECCCHHH-
Confidence 58999999999999999999987 54 3344342111 11111 223455556665555678999999885321
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
...++..+.+.|+++|=.||..-+
T Consensus 74 -----------------s~~~a~~~~~~G~~VID~ss~~R~ 97 (339)
T TIGR01296 74 -----------------SKEFAPKAAKCGAIVIDNTSAFRM 97 (339)
T ss_pred -----------------HHHHHHHHHHCCCEEEECCHHHhC
Confidence 234555556677777767776543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=60.09 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=72.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCC------eEEEEecCCCC--CccchhhhcCCC---ceEEEEcccCCcccCCCCEEE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKN------EVIVADNYFTG--SKDNLKKWIGHP---RFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~--~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~d~vi 99 (343)
+|.|+|++|.+|++++..|...+.. +++++++.... ......++.... ...++..+-...++.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999999999999999986632 58888874322 111111111100 001111111124667899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeC
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 144 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS 144 (343)
++||... ....+..+.+..|+.-...++....++. - .+|.+|-
T Consensus 81 itAG~~~--~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPR--KEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 9998643 2233467888999999999999999884 3 5666664
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=57.51 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=75.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCC-----CceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGH-----PRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|||.|+|+ |+||+.++..|..++.. ++.++++..........++... ...++ .+|-.-.++.+.|+|+-+||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i-~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKI-TGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEE-ecCCChhhhcCCCEEEEeCC
Confidence 68999999 99999999999888754 8999988633222222222111 12222 22211356778999999997
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
... ....+-.+.+..|..-...+.+...+.+- .|+.+|
T Consensus 79 ~pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VPR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 542 33346678899999999999999888875 555554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=58.01 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=75.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
++|.|+|+ |.+|+.++..|...|. +++++++|..........++.. .....+...+. ..+.++|+||+++|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccC
Confidence 47999995 9999999999999985 4899999865432222222111 11233333332 24678999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
... ....+..+.+..|..-...+++..++++- .+|.+|-
T Consensus 78 ~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 78 APQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 542 23345667889999999999999998775 6666663
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.9e-05 Score=64.01 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=54.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHh----cCCCeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCccc-----CCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLME----NEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLL-----IEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~-----~~~ 95 (343)
-.+.|.|||||-|.++++++++ .+ ..+-+..|+..+-.+.+..... .+...++-+|..|++. ..+
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~ 84 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA 84 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh
Confidence 4689999999999999999999 55 6777777754433333322211 1223378899987753 469
Q ss_pred CEEEEecCCCC
Q 019309 96 DQIYHLACPAS 106 (343)
Q Consensus 96 d~vi~~a~~~~ 106 (343)
-+|+||+|+.-
T Consensus 85 ~vivN~vGPyR 95 (423)
T KOG2733|consen 85 RVIVNCVGPYR 95 (423)
T ss_pred EEEEeccccce
Confidence 99999999764
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00015 Score=62.20 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcc---cCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD---VTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~d~vi~~a~~ 104 (343)
+...++|.||+||.|..++++|.++| .+-.+-.|+..+ -..+...+. +.+..+.+. ..+....+.++|+||+|+
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g-~~~aLAgRs~~k-l~~l~~~LG-~~~~~~p~~~p~~~~~~~~~~~VVlncvGP 81 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREG-LTAALAGRSSAK-LDALRASLG-PEAAVFPLGVPAALEAMASRTQVVLNCVGP 81 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcC-CchhhccCCHHH-HHHHHHhcC-ccccccCCCCHHHHHHHHhcceEEEecccc
Confidence 44689999999999999999999999 766555553211 112222222 223333332 223345579999999998
Q ss_pred CC
Q 019309 105 AS 106 (343)
Q Consensus 105 ~~ 106 (343)
..
T Consensus 82 yt 83 (382)
T COG3268 82 YT 83 (382)
T ss_pred cc
Confidence 75
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00065 Score=60.11 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCe---EEEEecC-CCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNE---VIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~---V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++|.|+||||++|+.+++.|.++..+. +..+.-. ..+..- . +....+.+...|. ..+.++|++|.+++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~---~-~~~~~l~v~~~~~--~~~~~~Divf~a~~ 77 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV---Q-FKGREIIIQEAKI--NSFEGVDIAFFSAG 77 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe---e-eCCcceEEEeCCH--HHhcCCCEEEECCC
Confidence 45899999999999999999999655366 4444321 111111 1 1112344443432 34467999998874
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
.. ....++..+.+.|+.+|=.||.+-+..
T Consensus 78 ~~------------------~s~~~~~~~~~~G~~VID~Ss~fR~~~ 106 (347)
T PRK06728 78 GE------------------VSRQFVNQAVSSGAIVIDNTSEYRMAH 106 (347)
T ss_pred hH------------------HHHHHHHHHHHCCCEEEECchhhcCCC
Confidence 21 123566667778889998999876643
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00015 Score=55.57 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=53.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++++|+|+ |..|+.++..|.+.|..+|+++.|+..+ .+.+...+....+.+...+-....+.++|+||++.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~r-a~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPER-AEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHH-HHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHH-HHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 6899999995 8899999999999995569999985322 2333333333456666655444456789999999753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0006 Score=51.36 Aligned_cols=86 Identities=24% Similarity=0.256 Sum_probs=63.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC---CCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~d~vi~~a~~ 104 (343)
.+++|++.| .| -|.+++..|.+.| ++|++++.+.. ... ......++++.+|++++.+. ++|.|+-+-
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G-~~ViaIDi~~~----aV~-~a~~~~~~~v~dDlf~p~~~~y~~a~liysir-- 85 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESG-FDVIVIDINEK----AVE-KAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR-- 85 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCC-CEEEEEECCHH----HHH-HHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence 458899999 66 8999999999999 99999997432 222 22224689999999998654 788887553
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r 138 (343)
.+. +-...+++.|++.++.
T Consensus 86 --------pp~-------el~~~~~~la~~~~~~ 104 (134)
T PRK04148 86 --------PPR-------DLQPFILELAKKINVP 104 (134)
T ss_pred --------CCH-------HHHHHHHHHHHHcCCC
Confidence 111 2234799999999994
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=56.97 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=75.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC---C-CceEEEE-cccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG---H-PRFELIR-HDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~---~-~~~~~~~-~d~~~~~~~~~d~vi~~a 102 (343)
.+||.|+|+ |.+|+.++..|...+. .++++++...........++.. . ....+.. +|.. .+.++|+||.+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECC
Confidence 479999996 9999999999998884 4688888754322222222211 1 1123332 4433 477999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
|... ....+-.+.+..|..-...+++...+++- .+|.+|-
T Consensus 80 G~~~--k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 80 GARQ--NEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 8543 22345667889999999999999998865 5666663
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00082 Score=59.79 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------------------cc----chhhhcCCCceEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--------------------KD----NLKKWIGHPRFELI 83 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------------------~~----~~~~~~~~~~~~~~ 83 (343)
.+.+|+|.|+ |.+|++++..|...|..++++++...-.. .+ .+.+....-.++.+
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 5678999995 99999999999999955899998742110 00 11111122245555
Q ss_pred EcccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 84 RHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 84 ~~d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
..+++.. .+.++|+||.+.. |...-..+.++|.+.++.+|+.++...||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~ln~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDATD-----------------NFETRFIVNDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence 5566532 3457999998863 112223577889999999999888777663
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0039 Score=54.70 Aligned_cols=110 Identities=15% Similarity=0.011 Sum_probs=74.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC-CceEEEE--cc-cCCcccCCCCEEEEecCCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH-PRFELIR--HD-VTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~d-~~~~~~~~~d~vi~~a~~~ 105 (343)
||.|+|++|.+|++++..|..++. .++.++++.. ......++... ...++.. +| -.-.++.++|+||.+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 589999999999999999998883 3788888754 11112222221 1123322 11 0124778999999999854
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
. ....+..+.+..|..-...++....+++- .+|.+|-
T Consensus 79 ~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 79 R--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred C--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 2 23446677889999999999999988875 5666664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=57.65 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=57.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
|+++|.|.||||++|..|++.|.++...++..+..+... .. +..+....++|+||.+....
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~~-- 61 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPDD-- 61 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCHH--
Confidence 578999999999999999999999984466666532111 00 11122234689999876210
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
....++..+.+.|+++|=+|+.+-+
T Consensus 62 ----------------~s~~~~~~~~~~g~~VIDlSadfRl 86 (313)
T PRK11863 62 ----------------AAREAVALIDNPATRVIDASTAHRT 86 (313)
T ss_pred ----------------HHHHHHHHHHhCCCEEEECChhhhc
Confidence 1234555666678899999988754
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=58.70 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=68.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------------------c----cchhhhcCCCceEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--------------------K----DNLKKWIGHPRFELI 83 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------------------~----~~~~~~~~~~~~~~~ 83 (343)
++++|+|.|+ |-+|+++++.|...|..+++++++..-.. . +.+......-.++.+
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 5689999995 66999999999999955888888753110 0 111111122345556
Q ss_pred EcccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 84 RHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 84 ~~d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
..|++.. .+.++|+||.+... ...-..+-++|.+.++.+|+.+....+|
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~D~-----------------~~~r~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDATDN-----------------FDTRLLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 6666532 34579999988631 1112246678889999999988777665
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=52.28 Aligned_cols=105 Identities=12% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc------------------------chhhhcCCCceEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------------------------NLKKWIGHPRFELI 83 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------------------------~~~~~~~~~~~~~~ 83 (343)
++.+|+|.|+.| +|.++++.|...|-.++++++...-.... .+.+..+.-+++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 568999999877 99999999999997778888764211000 01111122234444
Q ss_pred EcccCC------cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 84 RHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 84 ~~d~~~------~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
..++.+ ..+.++|+||.+.. +......+-+.|++.++.+|+.++.+.||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEE-----------------NYERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 444431 12347899987642 112233567889999999999998877763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0018 Score=55.49 Aligned_cols=88 Identities=22% Similarity=0.376 Sum_probs=53.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
|+|.|+|++|.+|+.+++.+.+....++.++........... ...++. ...|+.+ .+.++|+||.+..+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~~~~i~-~~~dl~~-ll~~~DvVid~t~p~---- 71 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----GALGVA-ITDDLEA-VLADADVLIDFTTPE---- 71 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----CCCCcc-ccCCHHH-hccCCCEEEECCCHH----
Confidence 799999999999999999998764377766543222111111 111221 1222222 233799999887321
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
....++..|.++|+++|.
T Consensus 72 --------------~~~~~~~~al~~G~~vvi 89 (257)
T PRK00048 72 --------------ATLENLEFALEHGKPLVI 89 (257)
T ss_pred --------------HHHHHHHHHHHcCCCEEE
Confidence 124577788888887773
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=54.85 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=73.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|+|.|.|+ |.+|..++..|...|. .+|.++++..........++... ....+...|. ..+.++|+||.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 68999997 9999999999999984 57999998643322222222111 1233333443 357789999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ....+..+....|..-...+++...+.+- .++.++
T Consensus 78 ~~--~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 78 NQ--KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 32 22345567788899999999998888765 455544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.004 Score=54.94 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=96.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-C-----eEEEEecCCCC--CccchhhhcCC-----CceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVADNYFTG--SKDNLKKWIGH-----PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~d 96 (343)
.||.|+|++|++|++++..|+..+. . +++.+++.... ......++... .++.+..+ ...++.++|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~--~~~~~~daD 81 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTD--PEEAFKDVD 81 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecC--hHHHhCCCC
Confidence 5899999999999999999998883 2 68888874321 11111111111 12222211 124667899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCc---ccCCCCCCCCCCCCCCCCC-CCCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSE---VYGDPLIHPQPETYWGNVN-PIGV 169 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~---v~~~~~~~~~~e~~~~~~~-~~~~ 169 (343)
+||.+||... ....+..+.+..|..-...++....+++- .++.+|-.. +|-. -+. . -..+
T Consensus 82 vVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~-----s~g~p~ 148 (323)
T TIGR01759 82 AALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA------SKN-----APDIPP 148 (323)
T ss_pred EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------HHH-----cCCCCH
Confidence 9999998542 33456678899999999999999988753 566655311 0000 000 0 1111
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
....|.+.+-.-++-...++..+++..-++-..|+|..
T Consensus 149 ~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 186 (323)
T TIGR01759 149 KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH 186 (323)
T ss_pred HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence 11233333333344444445567777777777788865
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0028 Score=51.80 Aligned_cols=105 Identities=15% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----------------------cchhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----------------------DNLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~ 85 (343)
++.+|+|.|+.| +|.++++.|...|-.++++++...-... +.+.++.+.-.++....
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 567999999766 9999999999999667888876421110 00112222234444444
Q ss_pred ccCC---cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~---~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
.+.+ ..+.++|+||.+... ......+-+.|++.++.+|+.++.+.+|.
T Consensus 99 ~~~~~~~~~~~~~dvVi~~~~~-----------------~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 99 DISEKPEEFFSQFDVVVATELS-----------------RAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred CccccHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 4432 124578999976521 11223466889999999999988776653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=57.15 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+++||.|.||+||.|..|++.|..+...++...+-+.. ....+.....+ ....+...|.......++|+||.+.-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecC
Confidence 46899999999999999999999998666655543221 12222222211 11222223333333446999998752
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
. . ....++......++++|=+|..+-.
T Consensus 80 h-g-----------------~s~~~v~~l~~~g~~VIDLSadfR~ 106 (349)
T COG0002 80 H-G-----------------VSAELVPELLEAGCKVIDLSADFRL 106 (349)
T ss_pred c-h-----------------hHHHHHHHHHhCCCeEEECCccccc
Confidence 1 1 0234566666677789988887654
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0051 Score=54.36 Aligned_cols=165 Identities=9% Similarity=0.055 Sum_probs=96.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-C-----eEEEEecCCCC--CccchhhhcC-----CCceEEEEcccCCcccCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVADNYFTG--SKDNLKKWIG-----HPRFELIRHDVTEPLLIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~--~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~ 94 (343)
.-+||.|+|++|.+|++++..|...+. . +++.+++.... ......++.. ..++.+..+| ..++.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--y~~~~d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDP--NVAFKD 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecCh--HHHhCC
Confidence 346999999999999999999998763 2 68888874321 1111111111 0123333211 246678
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC--C-eEEEEeCCc---ccCCCCCCCCCCCCCCCCC-CC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSE---VYGDPLIHPQPETYWGNVN-PI 167 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~--~-r~i~~SS~~---v~~~~~~~~~~e~~~~~~~-~~ 167 (343)
+|+||-+||... ....+..+.+..|..-...++....++. - .+|.+|-.. .|-.. +. . -.
T Consensus 81 aDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~------k~-----s~g~ 147 (326)
T PRK05442 81 ADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAM------KN-----APDL 147 (326)
T ss_pred CCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHH------HH-----cCCC
Confidence 999999998542 2345667888999999999999998844 2 666666421 00000 00 0 01
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
.+....|.+.+-.-++-...++..+++..-++...|+|..
T Consensus 148 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH 187 (326)
T PRK05442 148 PAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH 187 (326)
T ss_pred CHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence 1111233333333344444455567777777766677865
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=60.42 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-CCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~d~vi~~a~~~ 105 (343)
.+++|+|+|+.| +|.+.++.|.+.| ++|++.++........... +...++++..+......+. ++|.||...|..
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPFSENPEAQE-LLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCccchhHHHH-HHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 478999999988 9999999999999 9999998643222222122 2223566655432222223 389999988743
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.034 Score=42.87 Aligned_cols=138 Identities=21% Similarity=0.148 Sum_probs=78.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEccc--CCc------------ccCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV--TEP------------LLIEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~--~~~------------~~~~~ 95 (343)
.+|+|.||-|-+|+..++.+.+++ |-|.-++...+...+ .-.++.+|- ++. .-.++
T Consensus 4 grVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~Ad---------~sI~V~~~~swtEQe~~v~~~vg~sL~gekv 73 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQAD---------SSILVDGNKSWTEQEQSVLEQVGSSLQGEKV 73 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccccccc---------ceEEecCCcchhHHHHHHHHHHHHhhccccc
Confidence 589999999999999999999999 888777764322211 112233322 111 11269
Q ss_pred CEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHH-HHHHc-CC-eEEEEeCCcc-cCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLG-LAKRV-GA-RILLTSTSEV-YGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~-~a~~~-~~-r~i~~SS~~v-~~~~~~~~~~e~~~~~~~~ 166 (343)
|.||+.||.-.... ...+.+.++...+. +..|.. .+.++ +. -++.+..+.. . .+
T Consensus 74 Dav~CVAGGWAGGnAksKdl~KNaDLMwKQSvw-tSaIsa~lAt~HLK~GGLL~LtGAkaAl----------------~g 136 (236)
T KOG4022|consen 74 DAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVW-TSAISAKLATTHLKPGGLLQLTGAKAAL----------------GG 136 (236)
T ss_pred ceEEEeeccccCCCcchhhhhhchhhHHHHHHH-HHHHHHHHHHhccCCCceeeeccccccc----------------CC
Confidence 99999997432111 11233444444433 222222 22221 11 2444443322 2 23
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH-hCCc
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ-HGIQ 194 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~-~~~~ 194 (343)
....-.||..|.+..++.+.++.+ .|++
T Consensus 137 TPgMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 137 TPGMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred CCcccchhHHHHHHHHHHHHhcccccCCC
Confidence 333457999999999999998865 3443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0054 Score=47.43 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----------------------cchhhhcCCCceEEEEcccC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----------------------DNLKKWIGHPRFELIRHDVT 88 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d~~ 88 (343)
+|+|.|+ |-+|+++++.|...|..++++++...-... +.+....+.-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899995 999999999999999557888875421110 00111111223444444444
Q ss_pred Cc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 89 EP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 89 ~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
+. .+.++|+||.+... ......+.++|++.++.||..++...+|
T Consensus 80 ~~~~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 32 34579999988631 2224567889999999999988865443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=56.93 Aligned_cols=162 Identities=8% Similarity=0.033 Sum_probs=97.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-------CC-CeEEEEecCCCCCccchhhhcCC-----CceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-------EK-NEVIVADNYFTGSKDNLKKWIGH-----PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-------g~-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~d 96 (343)
-||.|+|++|.+|.+++..|... +. .++..+++..........++... .++.+...| -..+.++|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~--ye~~kdaD 178 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP--YEVFQDAE 178 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC--HHHhCcCC
Confidence 48999999999999999999988 52 26777777544333222222211 123222222 24677899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHH-cCC--eEEEEeCCc-----ccCCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA--RILLTSTSE-----VYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~-~~~--r~i~~SS~~-----v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+||..||... ....+-.+.+..|+.-...+.....+ .+- .+|.+|-.. +.....+ ...
T Consensus 179 iVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg------------~~~ 244 (444)
T PLN00112 179 WALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP------------NIP 244 (444)
T ss_pred EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC------------CCC
Confidence 9999998542 33456678899999999999999998 454 677776422 1100000 000
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
....-..+.+-.-++-...+.+.+++..-+.-.+|+|..
T Consensus 245 ~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 245 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 111122223333333344445567777777777788875
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=58.26 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=58.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe---EEEEecCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE---VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~~~ 105 (343)
++|.|+||||++|+.+++.|+++..+. ++.+.... ....... ..+-.....++.+ ..+.++|++|.+++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~--sg~~~~~---f~g~~~~v~~~~~~~~~~~~Divf~a~~~~ 76 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ--AGGAAPS---FGGKEGTLQDAFDIDALKKLDIIITCQGGD 76 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh--hCCcccc---cCCCcceEEecCChhHhcCCCEEEECCCHH
Confidence 789999999999999999777766465 55554321 1111111 1121222233332 3456799999888421
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCe--EEEEeCCcccC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEVYG 149 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r--~i~~SS~~v~~ 149 (343)
....+...+.+.|.+ +|=.||.+-+.
T Consensus 77 ------------------~s~~~~~~~~~aG~~~~VID~Ss~fR~~ 104 (369)
T PRK06598 77 ------------------YTNEVYPKLRAAGWQGYWIDAASTLRMK 104 (369)
T ss_pred ------------------HHHHHHHHHHhCCCCeEEEECChHHhCC
Confidence 134566667778854 67677766544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=47.59 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=66.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc----------------------hhhhcCCCceEEEEcc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN----------------------LKKWIGHPRFELIRHD 86 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~d 86 (343)
+++|+|.| .|-+|+.++..|...|..++++++...-..... +....+..+++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 47899999 788999999999999965888887642111100 0111123355566666
Q ss_pred cCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 87 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 87 ~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
+.+. .+.++|+||.|... ...-..+.+.|++.+.++|+.+..+.+|
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred cccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 6322 23479999988631 1223457779999999999888765544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00093 Score=55.96 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=23.6
Q ss_pred cCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 36 GGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 36 GatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
.+||.||.+++++|.++| ++|+++.+
T Consensus 22 ~SSGgIG~AIA~~la~~G-a~Vvlv~~ 47 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAG-HEVTLVTT 47 (227)
T ss_pred CcccHHHHHHHHHHHHCC-CEEEEEcC
Confidence 459999999999999999 99998875
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0059 Score=54.48 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=74.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC----CCceEEEE-cccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG----HPRFELIR-HDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~-~d~~~~~~~~~d~vi~~a~ 103 (343)
+||.|+|+ |.+|++++..|+..+. .++.+++...........++.. ....++.. +|. ..+.++|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy--~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY--AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH--HHhCCCCEEEECCC
Confidence 69999995 9999999999998884 4688888754332222222211 11233332 232 23678999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
... ....+..+.+..|+.-...+++...+++- .+|.+|-
T Consensus 115 ~~~--k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 115 ARQ--IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 643 22345567889999999999999988765 5666663
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=53.15 Aligned_cols=70 Identities=26% Similarity=0.379 Sum_probs=44.9
Q ss_pred CCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-
Q 019309 28 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP- 90 (343)
Q Consensus 28 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 90 (343)
.||+||||+| ||.+|.+|++++..+| ++|+.+..... +. ...+++.+...-.+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G-a~V~li~g~~~-----~~---~p~~~~~i~v~sa~em 72 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG-AEVTLIHGPSS-----LP---PPPGVKVIRVESAEEM 72 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TTS------------TTEEEEE-SSHHHH
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC-CEEEEEecCcc-----cc---ccccceEEEecchhhh
Confidence 5788888865 7999999999999999 99999986421 11 123677777655433
Q ss_pred ------ccCCCCEEEEecCCCC
Q 019309 91 ------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ------~~~~~d~vi~~a~~~~ 106 (343)
.+.++|++|++|++..
T Consensus 73 ~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 73 LEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHGGGGSEEEE-SB--S
T ss_pred hhhhccccCcceeEEEecchhh
Confidence 3346899999998654
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0067 Score=53.22 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=74.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC------CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG------HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
||.|.|+ |.+|+.++..|+.++. .++++++...........++.. ...+++..+|. ..+.++|+||.+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y--~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY--DDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH--HHhCCCCEEEECCC
Confidence 5889997 9999999999999884 4788888754332222222221 12345554432 46778999999998
Q ss_pred CCCccccccC--hHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYN--PVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~--~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
.... ...+ -.+.+..|..-...++....+++- .+|.+|-
T Consensus 78 ~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 78 PSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5421 1222 367889999999999999998876 4555543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0025 Score=59.94 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=58.0
Q ss_pred CChhhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCC
Q 019309 17 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d 96 (343)
|..+........+++|+|+| .|.+|..+++.|.++| ++|+++++............+...++++..++-.. ...++|
T Consensus 4 ~~~~~~~~~~~~~~~v~viG-~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D 80 (480)
T PRK01438 4 PPGLTSWHSDWQGLRVVVAG-LGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTD 80 (480)
T ss_pred ccchhhcccCcCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCC
Confidence 44454444445678999999 5889999999999999 99999986432222222233444577776654333 345689
Q ss_pred EEEEecCCC
Q 019309 97 QIYHLACPA 105 (343)
Q Consensus 97 ~vi~~a~~~ 105 (343)
.||...|..
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 999887743
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=52.59 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=53.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
..+++|||+|| |-+|...++.|++.| .+|+++.+. ..+.+........+.+....+....+.++|.||-+.
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VIs~~---~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG-AHIVVISPE---LTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEcCC---CCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 36899999995 999999999999999 999998753 233334444444577777666666777899888664
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=52.43 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=74.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-----CCCceEEEE-cccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-----GHPRFELIR-HDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~-~d~~~~~~~~~d~vi~~ 101 (343)
..+||.|+| +|.+|+.++..+...|..+|++++++.........+.. .....++.. .|. .++.++|+||.+
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t 81 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT 81 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence 347999999 69999999999998884478888875432211111111 111234432 444 367899999999
Q ss_pred cCCCCcccc---ccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~---~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
+|....... ..+..+.+..|..-...+++...+..- .+|.+|-
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 985432111 014566778899888899998888765 5666664
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=55.48 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=55.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC-Ce-EEEEe--cCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK-NE-VIVAD--NYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC 103 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~-~~-V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~ 103 (343)
+++|.|+||||.+|+.+++.|.++.. .+ +.++. |+.......... ..+.. .-+..+ ....++|++|.++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~----~~~~v-~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGG----KSIGV-PEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccC----ccccC-ccccccccccccCCEEEEeCc
Confidence 47899999999999999999999752 22 33332 211111011100 01111 111111 23347999999996
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
... ...+...+.+.|+-+|=-||.+-+.
T Consensus 76 ~~~------------------s~~~~p~~~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 76 GSV------------------SKEVEPKAAEAGCVVIDNSSAFRMD 103 (334)
T ss_pred hHH------------------HHHHHHHHHHcCCEEEeCCcccccC
Confidence 221 2457778888886666556655544
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0063 Score=45.60 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcCC-CceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
||.|+|++|.+|..+++.|.+...+++.++ .+. ....+........ ..+.+...+..+....++|+||.|.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-- 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA-RSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-- 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech-hhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH--
Confidence 588999999999999999999643787777 432 1111222211110 01111111212222247899998874211
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.......+. .+.+.|..+|-+||..-+
T Consensus 78 ------------~~~~~~~~~-~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 78 ------------SKEIAPLLP-KAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred ------------HHHHHHHHH-hhhcCCCEEEECCccccC
Confidence 111111222 233566688889988654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0074 Score=53.23 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=71.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-----CceEEEE-cccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~d~~~~~~~~~d~vi~~a~ 103 (343)
|||.|+|+ |.+|..++..|...|..+|+++++..........+.... ...++.. .|. .++.++|+||.++|
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECCC
Confidence 79999998 999999999999988228999998543322211111110 1122321 333 34678999999987
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
... ....+..+....|......+++...+... .+|.+|-
T Consensus 80 ~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 80 VPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 432 22334456677899888889888887754 4666553
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0095 Score=52.33 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=72.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEE-EcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELI-RHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~d~~~~~~~~~d~vi~~a~ 103 (343)
|+|.|.|+ |++|..++..|...|..+|+++++..........+..+ ....++. ..|+. .+.++|+||-++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence 78999995 99999999999999833799998743322211111111 0112222 24443 2678999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
... ....+..+.+..|......+++...+++- .+|.+|-
T Consensus 79 ~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 79 LPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 432 22334556788999999999998887754 5666554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0052 Score=53.05 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=71.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|||.| .|-+|.++++.|...|-..+++++...-.... .+.++-+.-.++....
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 567899999 67799999999999997778888754211110 1112222334555665
Q ss_pred ccCCcccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
.+.+..+.++|+||.+.. +......+-++|+++++.||...+.+.+|.
T Consensus 97 ~~~~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 97 PLTTDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred cCCHHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence 655556678999988752 222234577899999999999998887764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.013 Score=51.86 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=73.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~ 101 (343)
..+||.|+|| |.+|..++..|...+..+++++++..+.......+... ....++.. .|. .++.++|+||.+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~--~~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY--EDIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH--HHhCCCCEEEEC
Confidence 4689999996 99999999998888855788888754322111111110 11122222 232 266799999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
+|... ....+..+.+..|..-...+++...+..- .+|.+|-
T Consensus 81 ag~~~--~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 81 AGVQR--KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 97542 22344567788899888888888888765 4666654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=55.55 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=30.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+|.|+| .|.+|..++..|.++| ++|++++|..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAG-HEVRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEeCCH
Confidence 6899999 9999999999999999 9999999853
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00047 Score=62.28 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=60.7
Q ss_pred cCCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc
Q 019309 27 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 27 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 90 (343)
+.+++|||||| ||.+|.++++.|..+| ++|+++.+..... . . ..+.. .|+.+.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~~~g~~~~~---~----~-~~~~~--~~v~~~ 251 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTLITGPVSLL---T----P-PGVKS--IKVSTA 251 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEEeCCCCccC---C----C-CCcEE--EEeccH
Confidence 46899999998 4789999999999999 9999988643211 0 0 12222 233221
Q ss_pred ----------ccCCCCEEEEecCCCCcccccc------ChHHHHHHHHHHHHHHHHHHHHcC
Q 019309 91 ----------LLIEVDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 136 (343)
Q Consensus 91 ----------~~~~~d~vi~~a~~~~~~~~~~------~~~~~~~~nv~~~~~l~~~a~~~~ 136 (343)
...++|++|++||......... .....+..++..+..++...++..
T Consensus 252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 252 EEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred HHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 1236899999999754211111 001122355566667777766543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0066 Score=54.70 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=93.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe------EEEE--ecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE------VIVA--DNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~------V~~~--~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d 96 (343)
-||.|+|++|.+|.+++..|...+... ++.+ ++..........++.. ..++.+...| ..++.++|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~--y~~~kdaD 122 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP--YEVFEDAD 122 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC--HHHhCCCC
Confidence 589999999999999999999988433 3333 4432222111111111 0123322222 24677899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeCCc-----ccCCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSE-----VYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS~~-----v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+||.+||... ....+..+.+..|+.-...+.....++. - ++|.+|-.. +.... ....
T Consensus 123 IVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-------------sg~~ 187 (387)
T TIGR01757 123 WALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-------------APNI 187 (387)
T ss_pred EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-------------cCCC
Confidence 9999998542 2345667888999999999999998854 3 677766422 11000 0011
Q ss_pred -CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 169 -VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 169 -~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
....=+.+.+-.-++-...+++.+++..-++-.+|.|..
T Consensus 188 ~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 188 PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 111112233333344444445567777777667778865
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0088 Score=49.17 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc------------------c----chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK------------------D----NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------~----~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+++++.|...|-.++++++...-... + .+....+.-.++....
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999 8899999999999999558998887521110 0 1111111223333443
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+.+. .+.++|+||.+... ...-..+-+.|++.++.+|+.+..+.+|
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~d~-----------------~~~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCTDN-----------------FATRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 44322 34579999987631 1222357788899999999988766555
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=50.28 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.|+ |-+|+++++.|...|-.++++++...-.... .+.+..+.-+++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 5689999996 9999999999999996678888664211110 0111112224444554
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+... .+.++|+||.+.. |...-..+-++|.++++.+|+.++...+|
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred cCCHHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 44432 2457999998863 11122356788899998998866654443
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=49.46 Aligned_cols=68 Identities=19% Similarity=0.377 Sum_probs=52.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
|+++|.| .|-+|.++++.|.++| ++|+++++.. +....... ......+.+|-+++. +.++|+++-+.
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g-~~Vv~Id~d~----~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEG-HNVVLIDRDE----ERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCC-CceEEEEcCH----HHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 7888998 8999999999999999 9999998742 23233222 357888999999873 44799999776
Q ss_pred C
Q 019309 103 C 103 (343)
Q Consensus 103 ~ 103 (343)
+
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0051 Score=53.46 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=68.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCe---EEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNE---VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..++|.| ||||-+|+.+++.|.+++ +. ++++.-.. .. ..+.+...+-++.-.++.+..+.++|++|. +|.
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~-fpv~~l~l~~s~~--~s--~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~ 74 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSD-LEIEQISIVEIEP--FG--EEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGK 74 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcC-Cchhheeeccccc--cc--CCCEEEECCEEEEEEECCccCcccCCEEEE-cCH
Confidence 3478999 999999999999999998 53 44443210 00 112222234455555666777789999998 752
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
. ........+.+.|+.+|=-||.+-+.........|
T Consensus 75 ~------------------~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPE 110 (322)
T PRK06901 75 M------------------AQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPS 110 (322)
T ss_pred H------------------HHHHHHHHHHHCCCEEEECChHhhCCCCCCeeccc
Confidence 1 12356667778898999999988765443333333
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.013 Score=49.20 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCCCCCcc-chhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTGSKD-NLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
+.|+|.|.|++|-+|+.+++.+.+.+..+ +-++.|....... ..........+.+.-.|-......++|++|.+..+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch
Confidence 35899999999999999999999988555 4444553221110 000111111111111111233445789999887432
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
++...++.|.+++++.|.
T Consensus 81 ------------------~~~~~l~~~~~~~~~lVI 98 (266)
T COG0289 81 ------------------ATLENLEFALEHGKPLVI 98 (266)
T ss_pred ------------------hhHHHHHHHHHcCCCeEE
Confidence 245688888888875554
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0079 Score=50.53 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+++++.|...|..++++++...-.... .+.+..+.-+++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 567999999 88899999999999996678888653211100 0011111223444544
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+... .+.++|+||.|... ...-..+-++|.+.++.+|+.+....+|
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDN-----------------FATRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 44322 24479999988731 1112357788899999999987766554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.015 Score=49.23 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+.++..|...|-.++++++...-.... .+.+..+.-.++.+..
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 567899999 78899999999999996678888764322110 0011111223333333
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+... .+.++|+||.+... ...-..+-++|.+.++.+|+-++...+|
T Consensus 102 ~i~~~~~~~~~~~~DlVvd~~D~-----------------~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 102 KLDDAELAALIAEHDIVVDCTDN-----------------VEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred cCCHHHHHHHhhcCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 33321 24579999988631 1223456788999999999877665544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0041 Score=55.34 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=57.7
Q ss_pred CEEEEEcCchhHHHHHHHHHH-hcCCCe---EEEEecCCCCCccchhhhcCCCceEEEEcccCCc-ccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLM-ENEKNE---VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~-~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~d~vi~~a~~ 104 (343)
|+|.|+||||.+|+.+++.|. ++. +. ++.+.-. +..... ....+....-.++.+. .+.++|++|.++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~-fp~~~~~~~ss~---~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD-FDAIRPVFFSTS---QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC-CccccEEEEEch---hhCCCc--CCCCCCcceEEcCcccccccCCCEEEEcCCH
Confidence 579999999999999999999 444 44 3333321 111111 1111222233344443 56789999999852
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYG 149 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~ 149 (343)
. ....+...+.+.|. .+|=-||.+-+.
T Consensus 75 ~------------------~s~~~~p~~~~aG~~~~VIDnSSa~Rmd 103 (366)
T TIGR01745 75 D------------------YTNEIYPKLRESGWQGYWIDAASSLRMK 103 (366)
T ss_pred H------------------HHHHHHHHHHhCCCCeEEEECChhhhcC
Confidence 1 23467777888884 466566655443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0027 Score=55.38 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=50.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhhhcC--CCceEEEEcccCCc-----ccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIG--HPRFELIRHDVTEP-----LLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~--~~~~~~~~~d~~~~-----~~~~~d~ 97 (343)
.++++++|+|| |.+|++++..|.+.|..+|+++.|+.. .+.+.+.+.+. ...+.+...|+.+. .+..+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 35789999998 899999999999999335999998641 12222222221 12334455666543 2346799
Q ss_pred EEEecC
Q 019309 98 IYHLAC 103 (343)
Q Consensus 98 vi~~a~ 103 (343)
|||+-.
T Consensus 203 lINaTp 208 (289)
T PRK12548 203 LVNATL 208 (289)
T ss_pred EEEeCC
Confidence 999864
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=48.63 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=64.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
..+++|+|.| .|-+|..-++.|++.| .+|++++... .+.+..+....++++...+.....+.+++.||-+-+.
T Consensus 7 l~gk~vlVvG-gG~va~rk~~~Ll~~g-a~VtVvsp~~---~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d-- 79 (205)
T TIGR01470 7 LEGRAVLVVG-GGDVALRKARLLLKAG-AQLRVIAEEL---ESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD-- 79 (205)
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCC-CEEEEEcCCC---CHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC--
Confidence 3678999999 7999999999999999 9999987532 2344444445589999988887777788888855421
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
+ +.| ..+...|++.++
T Consensus 80 -------~----~ln----~~i~~~a~~~~i 95 (205)
T TIGR01470 80 -------E----ELN----RRVAHAARARGV 95 (205)
T ss_pred -------H----HHH----HHHHHHHHHcCC
Confidence 1 222 257777877664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0051 Score=62.08 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCe-------------EEEEecCCCCCccchhhhcCCCceEEEEcccCCcc---
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNE-------------VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--- 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 91 (343)
.+++|+|+|+ |++|+.+++.|.+.+..+ |++.++.... .+.+.+. .++++.+..|+.|..
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~-a~~la~~--~~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD-AKETVEG--IENAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH-HHHHHHh--cCCCceEEeecCCHHHHH
Confidence 3579999995 999999999999875333 6666653211 1122221 136677888877652
Q ss_pred --cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 92 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
+.++|+||+|....- ...++.+|.++|++++-.|
T Consensus 644 ~~v~~~DaVIsalP~~~------------------H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 644 KYVSQVDVVISLLPASC------------------HAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred HhhcCCCEEEECCCchh------------------hHHHHHHHHHcCCCEEECc
Confidence 247999999873211 1345666666666555444
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0019 Score=53.91 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=31.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+|.|+||+|.+|+.++..|.+.| ++|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH
Confidence 689999999999999999999999 9999998854
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0049 Score=57.56 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=51.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~~a 102 (343)
|+|+|+|+ |.+|+++++.|.+.| ++|++++++. +.........+++++.+|.++. .+.++|+||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~~----~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTDE----ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CcEEEEECCH----HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 68999997 999999999999999 9999998742 2222222224688999998875 245799998775
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.021 Score=50.13 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=72.0
Q ss_pred EEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
|.|.|+ |.+|..++..|+..|. .+++++++..+.......++... ...++...+- -..+.++|+||.++|...
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 468885 8899999999998884 57999988543322211111111 1223332211 247778999999998532
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
....+..+....|+.-...+++..++++- .+|.+|-
T Consensus 79 --~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 79 --KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 23345667888999999999999998865 5666553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.03 Score=48.15 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=72.1
Q ss_pred EEEEcCchhHHHHHHHHHHhcC--C-CeEEEEecCCCCCccchhhh---cCCC-ceEEEEcccCCcccCCCCEEEEecCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENE--K-NEVIVADNYFTGSKDNLKKW---IGHP-RFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g--~-~~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|.|+||+|.+|..++..|+..+ . .+++++++...........+ .... ..++...+-...++.++|+||.+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 5799999999999999999887 3 57888887543322211111 1111 22333222123567899999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ............|+.....+++..++..- .+|.+|
T Consensus 81 ~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 81 GR--KPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 43 22334456778899999999999988765 555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=54.83 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
+++|+|+| .|..|..+++.|.+.| ++|++.++............+...++.+..++.....+.++|.||...|.
T Consensus 14 ~~~i~v~G-~G~sG~a~a~~L~~~G-~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 14 NKKVAVVG-IGVSNIPLIKFLVKLG-AKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred CCeEEEEc-ccHHHHHHHHHHHHCC-CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCC
Confidence 57899999 8889999999999999 99999987532221111112333467777665443445678999987654
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.025 Score=49.56 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=66.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEcccC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRHDVT 88 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d~~ 88 (343)
+|||.| .|-+|.++++.|...|-..+++++...-.... .+.++...-.++....++.
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 589999 58999999999999997788888764221110 0011112234555556665
Q ss_pred Cc-----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 89 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 89 ~~-----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
+. -+.++|+||.+.. |...-..+-+.|++.++.||..++.+.+|.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~ip~I~~gt~G~~G~ 129 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADVPLIESGTTGFLGQ 129 (312)
T ss_pred CccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCCCEEEEecCcceeE
Confidence 42 2457999998752 223334577788889889998887776553
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=46.60 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-----------------cc----hhhhcCCCceEEEEcc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-----------------DN----LKKWIGHPRFELIRHD 86 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----------------~~----~~~~~~~~~~~~~~~d 86 (343)
.+.+|+|.| .|-+|+.+++.|...|..++++++...-... +. +......-+++.+...
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 567899999 6899999999999999667888887521100 00 0111122234444444
Q ss_pred cCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CCeEEEEeCCcccCC
Q 019309 87 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD 150 (343)
Q Consensus 87 ~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~r~i~~SS~~v~~~ 150 (343)
+.+. .+.++|+||.|.. |...-..+.+.|.+. ++.+|+.+...-|+.
T Consensus 106 i~~~~~~~~~~~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEAFD-----------------NAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred cCHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 4432 2447999998752 111223566788887 888998876655543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.029 Score=47.02 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+++++.|.+.|-.++++++...-.... .+....+.-.++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 567899999 78899999999999996688888753211100 0011111223344443
Q ss_pred ccCCc----c-cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 86 DVTEP----L-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 86 d~~~~----~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.+... . ..++|+||.+... ...-..+.+.|++.+++||...+.+-
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDS-----------------IRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 33321 1 2358999988631 12234578899999989988766543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.032 Score=48.07 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=65.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+.++..|...|-.++++++...-..+. .+.++.+.-+++.+..
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 567899999 77899999999999996678888764221110 1111112234555555
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.++.. .+.++|+|+.+.... +...-..+-++|++.++.+|+.|....
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~---------------~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFF---------------EFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCC---------------cHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 55442 245799999765211 112224577899999999998765543
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=51.39 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=54.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
.+|.|.|||||.|..|++.|......++..+.-.. . ++ ..|. +....++|++|.+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~------------~~--~~~~-~~~~~~~D~vFlalp~~---- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--R------------KD--AAER-AKLLNAADVAILCLPDD---- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--c------------cC--cCCH-hHhhcCCCEEEECCCHH----
Confidence 47999999999999999999999855666664211 0 00 0010 11224689999876311
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
....++..+.+.|+++|=+|+.+-.
T Consensus 61 --------------~s~~~~~~~~~~g~~VIDlSadfRl 85 (310)
T TIGR01851 61 --------------AAREAVSLVDNPNTCIIDASTAYRT 85 (310)
T ss_pred --------------HHHHHHHHHHhCCCEEEECChHHhC
Confidence 1234555666678899989987644
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=51.11 Aligned_cols=104 Identities=15% Similarity=0.058 Sum_probs=66.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
++.+|+|.| .|-+|+++++.|...|-.++++++...-.... .+.+..+.-.++.+..
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 668999999 58899999999999996688888774311110 0111112223444444
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+... .+.++|+||.+... ...-..+-++|.+.++.||+.+..+.+|
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~~d~-----------------~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 106 RLTWSNALDELRDADVILDGSDN-----------------FDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred ecCHHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 55432 34589999988731 1112246678899999999877655544
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.031 Score=46.95 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-----------------------chhhhcCCCceEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-----------------------NLKKWIGHPRFELIR 84 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~~~~~ 84 (343)
.+.+|+|.| .|-+|+++++.|...|..++++++...-.... .+....+.-.++...
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 567899999 78899999999999996688888754211100 001111122333344
Q ss_pred cccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 85 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 85 ~d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
..+.+. .+.++|+||.|... ...-..+-++|++.++.+|+.+..+.+|.
T Consensus 105 ~~~~~~~~~~~l~~~D~Vid~~d~-----------------~~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 105 GRLSEENIDEVLKGVDVIVDCLDN-----------------FETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred ccCCHHHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 434322 24478999987631 11122456788999999999888777664
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=51.92 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|++++..|...|-.++++++...-.... .+.+..+.-+++....
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 567999999 78899999999999996678888754211110 0011111123444444
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
.+... .+.++|+||.|.. |...-..+-++|.+.++.||+.+....+|.
T Consensus 120 ~i~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 120 RLDPSNAVELFSQYDLILDGTD-----------------NFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred cCChhHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 44432 2457999998762 112223467889999999999887776663
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0058 Score=52.79 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=47.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-CceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++++|+|+ |.+|+.++..|.+.| ++|+++.|..... +.+.+.+.. ..+... ++.+....++|+||++.+.
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g-~~v~v~~R~~~~~-~~la~~~~~~~~~~~~--~~~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKAD-CNVIIANRTVSKA-EELAERFQRYGEIQAF--SMDELPLHRVDLIINATSA 188 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHhhcCceEEe--chhhhcccCccEEEECCCC
Confidence 4689999997 899999999999999 8999998853221 222222211 112222 2223334579999999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0053 Score=54.54 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--c---CCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--L---IEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---~~~d~vi~~a 102 (343)
.+.+|||+||+|-+|...++.+.+.| ..+++.+.+..+.. .+.++....-+++.+.|+.+.. + .++|+|+.+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 47899999999999999999999999 56666654332222 3333333333444455554431 1 3699999988
Q ss_pred C
Q 019309 103 C 103 (343)
Q Consensus 103 ~ 103 (343)
|
T Consensus 220 G 220 (326)
T COG0604 220 G 220 (326)
T ss_pred C
Confidence 6
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0062 Score=52.82 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=47.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCC-ceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHP-RFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++++|+|+ |.+|+.++..|.+.|..+|+++.|+... .+.+.+.+... .+.+ ..+. ...+.++|+||++..
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~-a~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVER-AEELAKLFGALGKAEL-DLEL-QEELADFDLIINATS 194 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhhhccceee-cccc-hhccccCCEEEECCc
Confidence 35689999996 9999999999999996689999985422 12222222111 1222 1111 234467999999874
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0065 Score=47.57 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.+++|+|+|+ |.+|..+++.|.+.|.++|++++|+.... +...+.+....+.....|.. ....++|+||++....
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKA-KALAERFGELGIAIAYLDLE-ELLAEADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHH-HHHHHHHhhcccceeecchh-hccccCCEEEeCcCCC
Confidence 4689999997 99999999999998537899988753221 11111111111111112221 1256899999998543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0093 Score=48.92 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=45.5
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
...+|+|+|.|. |-+|+++++.|.+.| ++|++.+++. +.........+.+.+. ..+....++|+++.|+.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G-~~Vvv~D~~~----~~~~~~~~~~g~~~v~--~~~l~~~~~Dv~vp~A~ 94 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEG-AKLIVADINE----EAVARAAELFGATVVA--PEEIYSVDADVFAPCAL 94 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCCH----HHHHHHHHHcCCEEEc--chhhccccCCEEEeccc
Confidence 347899999995 799999999999999 9999887642 2222111111233322 22222237999998873
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.018 Score=53.01 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.|+|.|.| .|++|..++..|.+.| ++|++++++.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQ 36 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCH
Confidence 48999998 8999999999999999 9999999853
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=52.77 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC------------------Cccchhhhc----CCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG------------------SKDNLKKWI----GHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------------------~~~~~~~~~----~~~~~~~~~~ 85 (343)
++.+|+|.| .|-+|++++..|...|..+++++++..-. +.+.+.+.+ +.-.++....
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 677999998 57899999999999996688888875210 011111111 1122333433
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+.+. .+.++|+||++.... ..-..+-++|++.++.+|+.+....+|
T Consensus 213 ~~~~~~~~~~~~~~D~Vv~~~d~~-----------------~~r~~ln~~~~~~~ip~i~~~~~g~~g 263 (376)
T PRK08762 213 RVTSDNVEALLQDVDVVVDGADNF-----------------PTRYLLNDACVKLGKPLVYGAVFRFEG 263 (376)
T ss_pred cCChHHHHHHHhCCCEEEECCCCH-----------------HHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 33321 245799999987311 112246788999999999987655443
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.066 Score=46.06 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
|||.|.|. |.||+.+++.|.+....++.++.... ........... ..+. +..|+.+. ..++|+|+.|++..
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~-~~~~~~~~~~~-~~~~-~~~d~~~l-~~~~DvVve~t~~~---- 72 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPE-HSIDAVRRALG-EAVR-VVSSVDAL-PQRPDLVVECAGHA---- 72 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcC-CCHHHHhhhhc-cCCe-eeCCHHHh-ccCCCEEEECCCHH----
Confidence 79999997 99999999999987535665554321 11111112111 1222 22333333 35699999998532
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
....++..+.++|++++..|.
T Consensus 73 --------------~~~e~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 73 --------------ALKEHVVPILKAGIDCAVISV 93 (265)
T ss_pred --------------HHHHHHHHHHHcCCCEEEeCh
Confidence 123566777778887776554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0058 Score=49.56 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=42.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|++.| ||+|.||+.|++.|.+.| |+|++-.|+.+.........+. +. +.+--...+....|+||-..
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l~-~~---i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAALG-PL---ITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCC-CeEEEecCCChhHHHHHHHhhc-cc---cccCChHHHHhcCCEEEEec
Confidence 44555 559999999999999999 9999987765444443333332 11 12211222444689998654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.043 Score=51.24 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=51.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------~~~~d~vi~ 100 (343)
..++|+|+|+ |.+|+.+++.|.+.| ++|+++++.. +....... ..++.++.+|.+++. +.++|+||-
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~----~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDP----ERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCH----HHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4689999996 999999999999999 9999998642 22222211 136788999998763 347898886
Q ss_pred ec
Q 019309 101 LA 102 (343)
Q Consensus 101 ~a 102 (343)
+.
T Consensus 304 ~~ 305 (453)
T PRK09496 304 LT 305 (453)
T ss_pred CC
Confidence 54
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.021 Score=44.84 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|+|.| .|-+|...++.|++.| ++|+++.. ...+.+.. ...+.+....+....+.+.|.||-+.
T Consensus 12 ~~~~vlVvG-GG~va~rka~~Ll~~g-a~V~VIsp---~~~~~l~~---l~~i~~~~~~~~~~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVIIG-GGKIAYRKASGLKDTG-AFVTVVSP---EICKEMKE---LPYITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEcC---ccCHHHHh---ccCcEEEecccChhcCCCceEEEECC
Confidence 689999999 7999999999999999 99998853 22223332 23566666666666777889888654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0093 Score=51.57 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=43.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++|+|+|++|.+|+.++..|+++| .+|+++.|. ...+.. .+.+.|+||++.|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~g-atVtv~~~~----t~~L~~-----------------~~~~aDIvI~AtG 211 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNAN-ATVTICHSR----TQNLPE-----------------LVKQADIIVGAVG 211 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC-CEEEEEeCC----chhHHH-----------------HhccCCEEEEccC
Confidence 478999999999999999999999999 799998762 111221 1246899999886
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.05 Score=43.52 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=61.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-----------------cchh----hhcCCCceEEEEcccCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-----------------DNLK----KWIGHPRFELIRHDVTE 89 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----------------~~~~----~~~~~~~~~~~~~d~~~ 89 (343)
+|+|.| .|-+|+++++.|.+.|..++++++...-... +... +....-+++.+...+..
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 589999 6899999999999999557998887531100 0001 11122234444444433
Q ss_pred ----cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CCeEEEEeCCcccCC
Q 019309 90 ----PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD 150 (343)
Q Consensus 90 ----~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~r~i~~SS~~v~~~ 150 (343)
..+.++|+||.+... ...-..+.+.+.+. ++.||+-+...-|+.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~-----------------~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDN-----------------AETKAMLAESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred hhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHHCCCCEEEEehhhccCC
Confidence 234579999988521 11123466777766 778888766555543
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.015 Score=58.93 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=70.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----------------------cchhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----------------------DNLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~ 85 (343)
.+.+|||.|. |-+|.++++.|...|-..+++++...-... +.+.++-+.-.++....
T Consensus 23 ~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 23 AKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred hhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 4578999995 559999999999999778888875321110 01111222234555656
Q ss_pred ccCCcccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC--CeEEEEeCCcccCC
Q 019309 86 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~--~r~i~~SS~~v~~~ 150 (343)
++....+.++|+||.+-. +......+-++|++.+ +.||+.++.+.||.
T Consensus 102 ~l~~e~l~~fdvVV~t~~-----------------~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 102 PFNEEFLDKFQCVVLTEM-----------------SLPLQKEINDFCHSQCPPIAFISADVRGLFGS 151 (1008)
T ss_pred cCCHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCeEEEEEeecceEEE
Confidence 665556678999997642 2222345778999999 78999888887763
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0064 Score=55.08 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..++|.|.||.|.+|+.+++.|.+.| +.|++++|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC-CeEEEeCCC
Confidence 55899999999999999999999999 999999874
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.027 Score=47.51 Aligned_cols=118 Identities=19% Similarity=0.057 Sum_probs=69.6
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecC-CCCCccchhhhcCCCceEEEEc-ccCCcccCCCCEEEEe
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNY-FTGSKDNLKKWIGHPRFELIRH-DVTEPLLIEVDQIYHL 101 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~d~vi~~ 101 (343)
-...+-||.|+||.|-||+.|...|..+.. -+...++.. .++-...+...-....+.-+.+ |-...++.+.|+|+--
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 334567999999999999999776665542 234444432 1111111111100111222221 1122356689999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
||.. ....-..++++++|..-...+..++.++-- ++.++|-
T Consensus 104 AGVP--RKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 104 AGVP--RKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CCCC--CCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 9853 233445678899999999999999888754 5555553
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.056 Score=46.26 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc------------------chhhhcC--CCc--eEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------------------NLKKWIG--HPR--FELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------------------~~~~~~~--~~~--~~~~~~ 85 (343)
.+.+|+|.| .|-+|+++++.|.+.|-.++++++...-.... .+.+.+. .+. ++.+..
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 567899999 78899999999999996678888754211100 0000000 123 333322
Q ss_pred ccCC----ccc-CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 86 DVTE----PLL-IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 86 d~~~----~~~-~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
-+.. ..+ .++|+||.+.... ..-..|.+.|++.++.||...+++-.
T Consensus 108 ~i~~e~~~~ll~~~~D~VIdaiD~~-----------------~~k~~L~~~c~~~~ip~I~~gGag~k 158 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVIDAIDSV-----------------RPKAALIAYCRRNKIPLVTTGGAGGQ 158 (268)
T ss_pred ccChhhHHHHhcCCCCEEEEcCCCH-----------------HHHHHHHHHHHHcCCCEEEECCcccC
Confidence 1111 112 2689999887421 12235888999999999877666543
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.048 Score=47.88 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEecCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~a~~ 104 (343)
|.|+|+ |.+|..++..|...+ . +|++++++.........+... ....++.. .|. .++.++|+||.+++.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~-l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~--~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKE-LGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY--EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCC-CcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH--HHhCCCCEEEEecCC
Confidence 568997 999999999999888 5 999999864321111111111 11223322 342 357899999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ....+..+.+..|......+++...+... .+|.+|
T Consensus 77 p~--~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 77 PR--KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred CC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 32 22334455677888888899888888765 455555
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.04 Score=49.71 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=66.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|++++..|...|-.++++++...-.... .+.+....-+++.+..
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 567899999 68899999999999996688888774211110 0011111223444444
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.+... .+.++|+||.|... ...-..+-++|.+.++.+|+.+...-+|
T Consensus 119 ~i~~~~~~~~~~~~DlVid~~Dn-----------------~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGSDS-----------------FATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred ecCHHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 44432 34579999988731 2222356678899998888877655444
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.065 Score=45.42 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=57.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|.+||.|.| .|.||+.|++.|.+.+. +++.++.+.... ....... .+. ...|+.+-...++|+|+-||++.
T Consensus 1 ~~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~---~~~~~~~--~~~-~~~~l~~ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 1 MTHRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAAD---LPPALAG--RVA-LLDGLPGLLAWRPDLVVEAAGQQ 73 (267)
T ss_pred CceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCHH---HHHHhhc--cCc-ccCCHHHHhhcCCCEEEECCCHH
Confidence 358999999 99999999999987542 566666553221 1222211 122 22233333456799999999632
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
........+.+.|..++.+|-.
T Consensus 74 ------------------av~e~~~~iL~~g~dlvv~SvG 95 (267)
T PRK13301 74 ------------------AIAEHAEGCLTAGLDMIICSAG 95 (267)
T ss_pred ------------------HHHHHHHHHHhcCCCEEEEChh
Confidence 2344555666777777777754
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.013 Score=46.37 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|+|+|+++.+|..+++.|.++| .+|+++.|.. +.+. ..+.++|+||.+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~~----~~l~-----------------~~l~~aDiVIsat~~ 97 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKT----KNLK-----------------EHTKQADIVIVAVGK 97 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECCc----hhHH-----------------HHHhhCCEEEEcCCC
Confidence 478999999997788999999999999 7899988742 1111 133468999988753
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.056 Score=47.34 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=71.6
Q ss_pred EEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 34 VTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 34 ItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
|.| .|.+|++++..|...+. .++.++++..........++.. ...+++..+| -..+.++|+||.+||...
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~r- 76 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQ- 76 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCC-
Confidence 456 59999999999998884 3688888754332222222221 1234444222 246778999999998542
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
....+..+.+..|..-...+++...+++- .+|.+|-
T Consensus 77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 23345668889999999999999998865 6666664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.063 Score=46.21 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=53.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCC-ccchhhhcCC--CceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGS-KDNLKKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~-~~~~~~~~~~--~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|+|.|.|++|.+|+.+++.+.+....++.++ +|..... .......... .++. +..|+.+. ..++|+||.+..+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~-~~~d~~~l-~~~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVP-VTDDLEAV-ETDPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCce-eeCCHHHh-cCCCCEEEECCChH
Confidence 7999999999999999999998653676665 4322111 0111111110 1222 22333222 24589999886321
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
....++..|.++|+.+|.-+
T Consensus 80 ------------------~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 80 ------------------GVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred ------------------HHHHHHHHHHHCCCCEEEEC
Confidence 13456667777776665443
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.041 Score=50.52 Aligned_cols=73 Identities=19% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
+|+|+|.| -|--|..+++.|.++| +.|++.+........... .....++++..+...+.....+|.||-.=|.
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCC-CeEEEEcCCCCccchhhh-hhhccCceeecCccchhccccCCEEEECCCC
Confidence 89999999 8899999999999999 999999864433111111 2224577777776666566679999977654
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.054 Score=49.83 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=95.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc---CC---CeEEEEecCCC-CCccc-hhhhc----C-CCceEEEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN---EK---NEVIVADNYFT-GSKDN-LKKWI----G-HPRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~---g~---~~V~~~~r~~~-~~~~~-~~~~~----~-~~~~~~~~~d~~~~~~~~~d 96 (343)
-+|+||||+|.||.+|+..|.+- |. -.++.++.... ...+. .-++. . ...+.+... ...++.++|
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~--~~ea~~daD 201 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTD--LDVAFKDAH 201 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEEC--CHHHhCCCC
Confidence 57999999999999999988873 21 23455554211 11110 11110 1 123444432 235678999
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcc----cCCCCCCCCCCCCCCCCC-CCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEV----YGDPLIHPQPETYWGNVN-PIG 168 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v----~~~~~~~~~~e~~~~~~~-~~~ 168 (343)
+||-++|.. .....+-.+....|..-...+..+..+... +++.+.|--+ |-... . . -..
T Consensus 202 vvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k-----~------apgiP 268 (452)
T cd05295 202 VIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIK-----Y------APSIP 268 (452)
T ss_pred EEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHH-----H------cCCCC
Confidence 999999853 233446677889999999999998887663 6666665211 00000 0 1 111
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
+....+.+....-++....+++.+++..-++-..|.|..
T Consensus 269 ~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH 307 (452)
T cd05295 269 RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNI 307 (452)
T ss_pred HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc
Confidence 122344444444444455556668888888777888875
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.2 Score=37.10 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=50.3
Q ss_pred CEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 30 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
|+|.|.|+| +-.|..+++.|.+.| ++|+.+.-.. ... .+.. ...++.+ .-..+|.++.+..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~~----~~i------~G~~-~y~sl~e-~p~~iDlavv~~~--- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPKG----GEI------LGIK-CYPSLAE-IPEPIDLAVVCVP--- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTTC----SEE------TTEE--BSSGGG-CSST-SEEEE-S----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCCc----eEE------CcEE-eeccccC-CCCCCCEEEEEcC---
Confidence 579999998 778999999999999 9999986421 111 1222 2233433 2357899887762
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS 144 (343)
-..+..+++.|.+.|+ .+++.++
T Consensus 65 ---------------~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 65 ---------------PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp ---------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred ---------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2235578889998899 5666555
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.042 Score=49.07 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=56.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---------------cCCCceEEEEcccCCcccCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---------------IGHPRFELIRHDVTEPLLIE 94 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---------------~~~~~~~~~~~d~~~~~~~~ 94 (343)
+||.|.|. |-||+.+++.+.+....++.++..........+... ....++. +.++. +..+.+
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~-V~~~~-~el~~~ 78 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIP-VAGTI-EDLLEK 78 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceE-EcCCh-hHhhcc
Confidence 68999998 999999999998876577777764221100000000 0001111 11221 222347
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+|+||.|.+... ....+..+.++|+++|+-++.
T Consensus 79 vDVVIdaT~~~~------------------~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGGV------------------GAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCchh------------------hHHHHHHHHHCCCEEEEcCCC
Confidence 999999985432 234667788888787777764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.059 Score=39.76 Aligned_cols=64 Identities=25% Similarity=0.438 Sum_probs=46.5
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
|+|+| .|-+|..+++.|.+.+ .+|++++++ .+...... ..++.++.+|..++. +.+++.|+-+.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~-~~vvvid~d----~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGG-IDVVVIDRD----PERVEELR-EEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESS----HHHHHHHH-HTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEc-CCHHHHHHHHHHHhCC-CEEEEEECC----cHHHHHHH-hcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 57888 5789999999999976 799999863 22222222 245889999999873 34789888776
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.073 Score=44.70 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=64.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----c------------------chhhhcCCCceEEEEcccC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----D------------------NLKKWIGHPRFELIRHDVT 88 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----~------------------~~~~~~~~~~~~~~~~d~~ 88 (343)
+|||.| .|-+|.++++.|...|-.++++++...-... + .+.+..+.-+++....++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589998 8889999999999999667888876421111 0 0011112223445555553
Q ss_pred C------cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 89 E------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 89 ~------~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
+ ..+.++|+||.+.. |...-..+-+.|.+.++.+|..++.+-+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 2 12457999998752 23334457778888888999887766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.066 Score=38.71 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=56.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
..+++|||+|| |-+|..=++.|++.| .+|+++.... .... ..+++..-++. ..+.+++.||-+.+.
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~g-A~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at~d-- 70 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAG-AKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAATDD-- 70 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCT-BEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-SS---
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecCCC--
Confidence 36899999995 999999999999999 9999998632 1111 35556655554 556788888854421
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+ .. ...+...|++.+ .++.++.
T Consensus 71 -------~----~~----n~~i~~~a~~~~-i~vn~~D 92 (103)
T PF13241_consen 71 -------P----EL----NEAIYADARARG-ILVNVVD 92 (103)
T ss_dssp -------H----HH----HHHHHHHHHHTT-SEEEETT
T ss_pred -------H----HH----HHHHHHHHhhCC-EEEEECC
Confidence 1 11 245777887766 3444443
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.012 Score=54.38 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=44.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|.|+||+|.+|+.+++.|.+.| ++|++++|+.... ..... ..++.+ ..|. ...+.++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~~~-~~~a~---~~gv~~-~~~~-~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPKKG-KEVAK---ELGVEY-ANDN-IDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChHHH-HHHHH---HcCCee-ccCH-HHHhccCCEEEEec
Confidence 689999999999999999999999 9999999853221 11111 112321 1111 12345789999876
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.059 Score=49.11 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|+++++.|...|-.++++++...-.... .+.+....-+++.+..
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 567999999 77899999999999996678888764211110 0111112224555555
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
.++.. .+.++|+||.|... ...-..+-++|.+.++.+|+.+...-+|
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGTDN-----------------FPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 55442 24579999988731 1112345678888988888876655554
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=47.05 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=26.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVI 58 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~ 58 (343)
|+|.|.||+|.+|+.+++.|.+.| +.|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g-~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG-LGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC-CEEE
Confidence 689999999999999999999999 8886
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.037 Score=48.04 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=61.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhcCCCceEEEEcccC----CcccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWIGHPRFELIRHDVT----EPLLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d~~----~~~~~~~d~vi~~ 101 (343)
|++++|.|+| +|.||..++..|.+....++.++......... .... ..++.....|+. ++.+.++|+||.+
T Consensus 2 m~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~---~~Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 2 MSKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARAR---RLGVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHH---HcCCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 5678999999 99999998888887654677766532221111 1111 123443323322 2234579999988
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
.+.. ........+.+.|+++|-.|+.+
T Consensus 78 T~a~------------------~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAG------------------AHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCHH------------------HHHHHHHHHHHcCCeEEECCccc
Confidence 7421 12356777788898999888887
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.029 Score=48.39 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=53.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|..++|.|.| .|.||+.+++.|.+. ..+++.++......+.+...... +......|+.+ .+.++|+|+-|+...
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~---g~~~~~~~~ee-ll~~~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL---RRPPPVVPLDQ-LATHADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc---CCCcccCCHHH-HhcCCCEEEECCCcH
Confidence 4568999999 799999999999874 32777655432211111111111 11111122222 234689999987421
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
. ...+...+.+.|..++..|
T Consensus 79 ~------------------h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 79 V------------------LRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred H------------------HHHHHHHHHHcCCcEEEec
Confidence 1 1344555667777666554
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.018 Score=49.55 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEE-EcccCCcccCCCCEEEEecCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELI-RHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
.+++|.|+|+.| ||+-=++...+=| .+|+++++...++.+..+.+-...-+... ..|.......--|.++|++....
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA 258 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc
Confidence 789999999999 9999999999999 99999998654555555544332222222 22222222223555555553221
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
. . ....++..++..| ++|+++-.
T Consensus 259 ~----~-----------~~~~~~~~lk~~G-t~V~vg~p 281 (360)
T KOG0023|consen 259 E----H-----------ALEPLLGLLKVNG-TLVLVGLP 281 (360)
T ss_pred c----c-----------chHHHHHHhhcCC-EEEEEeCc
Confidence 0 0 0124555555544 88888754
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.022 Score=57.05 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=103.8
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhhhcCCCceEE--EEcccCCc--------
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIGHPRFEL--IRHDVTEP-------- 90 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~~~~~~~--~~~d~~~~-------- 90 (343)
+..+...|..+|+||-|-.|-.|++-|..+|...++...|+.- +............++.+ -..|++..
T Consensus 1762 rt~~hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~ 1841 (2376)
T KOG1202|consen 1762 RTYCHPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIE 1841 (2376)
T ss_pred hhhcCccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHH
Confidence 4566678999999999999999999999999556666666421 11111112222234433 33444432
Q ss_pred ---ccCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCC
Q 019309 91 ---LLIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 91 ---~~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.+.-+--|||+|...-... ...+..+.-+..+.++.++=...++.-- -||.+||.+.-
T Consensus 1842 ~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscG------------ 1909 (2376)
T KOG1202|consen 1842 ESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCG------------ 1909 (2376)
T ss_pred HhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeeccc------------
Confidence 1223777888886543222 2233344455667777777666666543 59999998642
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccc
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v 203 (343)
.-...++.||.+-..+|+++.....+ |++-+-+--|-|
T Consensus 1910 ----RGN~GQtNYG~aNS~MERiceqRr~~-GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1910 ----RGNAGQTNYGLANSAMERICEQRRHE-GFPGTAIQWGAI 1947 (2376)
T ss_pred ----CCCCcccccchhhHHHHHHHHHhhhc-CCCcceeeeecc
Confidence 12234577999999999999887554 787777665533
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.066 Score=49.91 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=50.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC--CceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.+++|+|+|+ |-.|.++++.|.++| +.|++.+..... +.... +.. .++.+..+...+....++|.||...|..
T Consensus 4 ~~~~~~v~G~-g~~G~~~a~~l~~~g-~~v~~~d~~~~~--~~~~~-l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 4 QNKKILVAGL-GGTGISMIAYLRKNG-AEVAAYDAELKP--ERVAQ-IGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCc--hhHHH-HhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 4689999996 579999999999999 999998864322 11112 221 3677766654444445799999877643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.016 Score=50.76 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|+|+|. |.+|+.++..|.+.| .+|++++|+... .... ...+.+++..+-....+.++|+||+++
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~G-a~V~v~~r~~~~----~~~~-~~~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALG-ANVTVGARKSAH----LARI-TEMGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHH----HHHH-HHcCCeeecHHHHHHHhCCCCEEEECC
Confidence 5799999995 889999999999999 899999985321 1111 112344332222223456899999986
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0082 Score=48.56 Aligned_cols=32 Identities=38% Similarity=0.550 Sum_probs=26.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|||.|.| .||+|..++..|.+.| ++|++++.+
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G-~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKG-HQVIGVDID 32 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTT-SEEEEE-S-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCC-CEEEEEeCC
Confidence 8999997 9999999999999999 999999874
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.015 Score=50.55 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=45.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|+|+|. |.+|+.+++.|...| .+|++++|+... ...... .+...+..+-.+..+.++|+||++.
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G-~~V~v~~R~~~~----~~~~~~-~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALG-ARVFVGARSSAD----LARITE-MGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCC-CEEEEEeCCHHH----HHHHHH-CCCeeecHHHHHHHhccCCEEEECC
Confidence 5789999995 889999999999999 899999985321 111111 1233222221223456899999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=42.26 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|||+| .|-+|..=++.|++.| .+|+++.-. -.+.+..+.....+++...++....+.+++.||-+.
T Consensus 24 ~~~~VLVVG-GG~VA~RK~~~Ll~~g-A~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIG-GGKAAFIKGKTFLKKG-CYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECC
Confidence 578999999 6888988889999999 999998742 334444454556789988888777777888888654
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.018 Score=51.04 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=63.6
Q ss_pred ccCCCCEEEEecCCCCcccc-ccCh--HHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 91 LLIEVDQIYHLACPASPIFY-KYNP--VKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 91 ~~~~~d~vi~~a~~~~~~~~-~~~~--~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.+.++..+|.+.|....... ...+ ...+..|. .++..+. +.+. ++|.++|...
T Consensus 200 ~l~~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl----~laq~f~~~~~~~~~K~~vIvTSfn~--------------- 260 (410)
T PF08732_consen 200 SLDDIKTMISTLGSTSAQAKSSKAARHKIDYQLNL----DLAQTFANDIKNTGNKKLVIVTSFNN--------------- 260 (410)
T ss_pred chhhhhhheecCCCChhhccccccchhhccccccH----HHHHHhhhhhccCCCceEEEEEecCc---------------
Confidence 44468889988886542111 1111 12233444 4555554 5555 8999998653
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~ 209 (343)
.......+|-++|...|.-+.......=-..+|+|||.+.|...+
T Consensus 261 --~~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 261 --NAISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred --chhhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 344555789999999999887765421237999999999997754
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.022 Score=49.47 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=46.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|+|+| +|..|++++..|.+.|..+|++++|.... .+.+...+. .....+...+-....+.++|+||++.
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~k-a~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPAR-AAALADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHH-HHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 468999999 57799999999999994589999986432 222322221 11233322221122456799999994
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.071 Score=46.44 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
++|.|+| .|.+|..++..|+..| ++|+++++...
T Consensus 6 ~~V~ViG-aG~mG~~iA~~~a~~G-~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVG-AGQMGAGIAEVCARAG-VDVLVFETTEE 39 (286)
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence 4899999 5999999999999999 99999998543
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.056 Score=50.75 Aligned_cols=71 Identities=25% Similarity=0.193 Sum_probs=49.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|.| .|-.|.++++.|.++| +.|++.++.... ........++++..+.-....+.++|.||...|.
T Consensus 14 ~~~~v~v~G-~G~sG~a~a~~L~~~G-~~V~~~D~~~~~----~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi 84 (473)
T PRK00141 14 LSGRVLVAG-AGVSGRGIAAMLSELG-CDVVVADDNETA----RHKLIEVTGVADISTAEASDQLDSFSLVVTSPGW 84 (473)
T ss_pred cCCeEEEEc-cCHHHHHHHHHHHHCC-CEEEEECCChHH----HHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCC
Confidence 456799999 8889999999999999 899999874321 1122222367776653323334578999987764
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.02 Score=49.70 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=43.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|.|.| .|.+|+.++..|.+.| ++|++++|+. +..........+.....+. ....++|+||-|.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d~~~----~~~~~a~~~g~~~~~~~~~--~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLG-HTVYGVSRRE----STCERAIERGLVDEASTDL--SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHHCCCcccccCCH--hHhcCCCEEEEcC
Confidence 5899998 8999999999999999 9999998742 2222221111122111121 2356799999876
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.017 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.9
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
+|.|.|+ |.+|+.++..+...| ++|++++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAG-YEVTLYDRSP 32 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-SEEEEE-SSH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCC-CcEEEEECCh
Confidence 6899995 999999999999999 9999999854
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.072 Score=48.89 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=65.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|+|++| +|..+++.|...|-..+++++...-.... .+..+-+.-.++++..
T Consensus 19 ~~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 19 ESAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred hhCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 567899999665 99999999999996678888753211100 0111111223344444
Q ss_pred ccCC-----c-ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTE-----P-LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~-----~-~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
++.+ + -+.++|+||.+-. +......+.+.|++.++.+|+++|.+.||.
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~-----------------~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~ 151 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNL-----------------PESTLLRLADVLWSANIPLLYVRSYGLYGY 151 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEecccCEEE
Confidence 3321 1 2346788875321 111223477889999999999999998874
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.013 Score=46.34 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+|+|.+.| .|-+|+.+++.|.+.| ++|++++|. ++....+.. .+++. ++-......++|+||-|.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~d~~----~~~~~~~~~-~g~~~--~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVYDRS----PEKAEALAE-AGAEV--ADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEEESS----HHHHHHHHH-TTEEE--ESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEeeccc----hhhhhhhHH-hhhhh--hhhhhhHhhcccceEeec
Confidence 47899999 6999999999999999 999999984 233333322 13222 222222344679999876
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.02 Score=50.53 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|.|+ |-+|..+++.|...|..+|++++|+.... ..+...+. ......+-....+.++|+||.+.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERA-EELAKELG---GNAVPLDELLELLNEADVVISATGA 248 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHcC---CeEEeHHHHHHHHhcCCEEEECCCC
Confidence 5899999995 99999999999997757899998853221 12222222 2333322112234578999998863
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.016 Score=51.75 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----cCCCCEEEEe
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL----LIEVDQIYHL 101 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~d~vi~~ 101 (343)
...++.|||.||+|-+|+..++.+...+ ..+++.+++. ...+..+.+-...-+++-..|..+.. ..++|+|+.|
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~-e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSK-EKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC 232 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEccc-chHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence 3467899999999999999999999998 5544444432 12222222222222333333333221 3369999999
Q ss_pred cCCC
Q 019309 102 ACPA 105 (343)
Q Consensus 102 a~~~ 105 (343)
+|..
T Consensus 233 vg~~ 236 (347)
T KOG1198|consen 233 VGGS 236 (347)
T ss_pred CCCC
Confidence 9853
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.88 Score=39.47 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=54.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-CCCEEEEecCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPAS 106 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~d~vi~~a~~~~ 106 (343)
.+.+|+|-|-||.+|+.+.+.|...| +.++.-.. .....+.. .++..+. ++.|.... ++|.++-+...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~-p~~~~~~v------~G~~~y~-sv~dlp~~~~~Dlavi~vpa-- 73 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVT-PGKGGTTV------LGLPVFD-SVKEAVEETGANASVIFVPA-- 73 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCC-CCEEEEEC-CCCCccee------cCeeccC-CHHHHhhccCCCEEEEecCH--
Confidence 46789999999999999999999999 66433222 11101111 1222221 11121111 37888877621
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~ 145 (343)
.....+++.|.+.|+ .+|.+|+.
T Consensus 74 ----------------~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 74 ----------------PFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred ----------------HHHHHHHHHHHHCCCCEEEEECCC
Confidence 123467788888898 46666665
|
ATP citrate lyases appear to form an outgroup. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.019 Score=51.85 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.++++||+| .|-+|.-++++|.+.|...|+++.|..... +.+... -+.++...|-....+.++|+||.+.|..
T Consensus 177 ~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA-~~La~~---~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 177 KDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERA-EELAKK---LGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred ccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHH---hCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 788999999 899999999999999977899998854222 222222 2355666555566777899999987633
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=43.53 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh-hhcCCCceEEE-EcccCCcc----cCCCC-EEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK-KWIGHPRFELI-RHDVTEPL----LIEVD-QIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~-~~d~~~~~----~~~~d-~vi~~ 101 (343)
.++|+|.|++|-+|+.+++.+.+.+ .+++...-..... +... ..... .+.+. ..|+.+.. ...+| ++|.+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~-~~Lv~~~~~~~~~-~~~~~~~~g~-~v~~~~~~dl~~~l~~~~~~~~~~VvIDF 87 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAG-LQLVPVSFTGPAG-VGVTVEVCGV-EVRLVGPSEREAVLSSVKAEYPNLIVVDY 87 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCC-CEEEEEecccccc-ccccceeccc-eeeeecCccHHHHHHHhhccCCCEEEEEC
Confidence 3799999999999999999999966 7776643211111 1111 11111 33333 13332221 12588 78876
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
.-+ ..+...++.|.++|+++|.=+|.
T Consensus 88 T~P------------------~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 88 TLP------------------DAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred CCh------------------HHHHHHHHHHHHCCCCEEEECCC
Confidence 522 22456888999999977654443
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.025 Score=49.12 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=46.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-CceEEEEc-ccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-PRFELIRH-DVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~-d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++++|+| +|-.|+.++..|.+.|..+|+++.|+..+ .+.+...+.. ..+..+.. +-....+.++|+|||+...
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~k-a~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDK-LSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 568999999 58899999999999995579999985422 2222222211 11111110 1011234578999998743
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.048 Score=47.05 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
+.|+|+|.| .|.||+.+++.|.++| +.|.++.+..
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g-~~v~i~g~d~ 36 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAG-LVVRIIGRDR 36 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcC-CeEEEEeecC
Confidence 457788888 9999999999999999 9988887753
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.038 Score=47.65 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=43.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|+|+|.++.+|..++..|.++| .+|+++.+.. ..+. ....+.|+||.+.|.
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s~t----~~l~-----------------~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHSRS----KDMA-----------------SYLKDADVIVSAVGK 211 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCc----hhHH-----------------HHHhhCCEEEECCCC
Confidence 478999999999999999999999999 9999987631 1111 123468999988864
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.13 Score=47.30 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=30.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+|.|.| .|++|..++..|.+.| ++|++++++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G-~~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG-HEVTGVDIDQ 33 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC-CeEEEEECCH
Confidence 6899998 8999999999999999 9999999853
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=45.91 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+++|+||+|.+|..+++.+...| ..|+++.+.
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~~ 196 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRS 196 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEeCC
Confidence 357899999999999999999999999 899888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.039 Score=47.87 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.||+|.|.|.+|.+|..++..|+++| +.|+++.+.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~~ 192 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHSR 192 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC-CEEEEECCC
Confidence 68999999999999999999999999 999999763
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.025 Score=51.78 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.+++|+|+|+ |-+|+.++..|.+.|..+++++.|... +.+.+...+. .......|-....+.++|+||+|.+..
T Consensus 180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~-ra~~La~~~~--~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE-KAQKITSAFR--NASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH-HHHHHHHHhc--CCeEecHHHHHHHhccCCEEEECcCCC
Confidence 6789999995 999999999999999567999988542 2233332221 123333222233456799999998643
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=50.72 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=63.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCc----c-----------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSK----D-----------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~----~-----------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.|. | +|++++..|...|- -++++++...-..+ . .+......-+++.+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 5679999999 8 99999999999993 57888766321100 0 0011112234555555
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
.++.. .+.++|+||.|... ...=..+.++|.+.++.+|+-++..
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~-----------------~~~R~~ln~~a~~~~iP~i~~~~~~ 231 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDS-----------------LDVKVLLREAARARRIPVLMATSDR 231 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 55432 24479999998731 1112246688999999999877643
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.64 Score=43.32 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=56.0
Q ss_pred CCCEEEEEcCc---hhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGA---GFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGat---G~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.-++|.|.|+| |-+|..+++.|.+.| | .|+.+... .... .++..+. ++.+. -..+|.++-+.
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~----~~~i------~G~~~~~-sl~~l-p~~~Dlavi~v 72 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK----AGEI------LGVKAYP-SVLEI-PDPVDLAVIVV 72 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC----CCcc------CCccccC-CHHHC-CCCCCEEEEec
Confidence 34789999998 778999999999999 6 67766532 1111 1222221 11111 12578888765
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCc
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 146 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~ 146 (343)
. -.....+++.|.+.|+ .+|.+|+..
T Consensus 73 p------------------~~~~~~~l~e~~~~gv~~~vi~s~gf 99 (447)
T TIGR02717 73 P------------------AKYVPQVVEECGEKGVKGAVVITAGF 99 (447)
T ss_pred C------------------HHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2 1224568888888999 577777763
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.038 Score=47.66 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-CCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~d~vi~~a~~ 104 (343)
.+++|+|+| +|-.+++++..|++.|..+++++.|.... .+.+.+.+..........+..+.... ..|+|||+-..
T Consensus 125 ~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~r-a~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 125 TGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRER-AEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 478999999 67789999999999996689999985433 33344333322211111222222222 58999998753
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=43.60 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
.=|.|.| .|-+|++++..|++.|-.++.+++-
T Consensus 75 syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 75 SYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred cEEEEEe-cCchhHHHHHHHHHhcCceEEEech
Confidence 3477777 7889999999999999556666653
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.072 Score=49.38 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=50.9
Q ss_pred cCCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc
Q 019309 27 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 27 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 90 (343)
..||+||||+| ||.+|.+|++.+..+| .+|+.+.-.. .+. ...+++++..+-.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G-A~VtlI~Gp~-----~~~---~p~~v~~i~V~ta~e 324 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG-AEVTLISGPV-----DLA---DPQGVKVIHVESARQ 324 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC-CcEEEEeCCc-----CCC---CCCCceEEEecCHHH
Confidence 47899999976 7999999999999999 9999987321 111 124566666544332
Q ss_pred ------ccCCCCEEEEecCCCC
Q 019309 91 ------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ------~~~~~d~vi~~a~~~~ 106 (343)
.....|++|++|++..
T Consensus 325 M~~av~~~~~~Di~I~aAAVaD 346 (475)
T PRK13982 325 MLAAVEAALPADIAIFAAAVAD 346 (475)
T ss_pred HHHHHHhhCCCCEEEEeccccc
Confidence 1234899999998653
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.16 Score=43.44 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=54.1
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEE-----EcccCCcccCCCC-EEEEecCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELI-----RHDVTEPLLIEVD-QIYHLACP 104 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~~~~~~d-~vi~~a~~ 104 (343)
+|+|.|++|-+|+.+++.+.+.+ .+++...-......+........ .+.++ ..|+.+-....+| ++|.+.-+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~-~~Lv~~~~~~~~~~~~~~~~~g~-~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P 79 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAG-LEIVPTSFGGEEEAENEAEVAGK-EILLHGPSEREARIGEVFAKYPELICIDYTHP 79 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCC-CEEEeeEccccccccchhhhccc-ceeeeccccccccHHHHHhhcCCEEEEECCCh
Confidence 69999999999999999999977 77776421111111111111111 33332 2222222212388 88877522
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
. .+...++.|.++++++|.=+|
T Consensus 80 ~------------------~~~~n~~~~~~~gv~~ViGTT 101 (275)
T TIGR02130 80 S------------------AVNDNAAFYGKHGIPFVMGTT 101 (275)
T ss_pred H------------------HHHHHHHHHHHCCCCEEEcCC
Confidence 1 133457889999987665443
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.092 Score=49.55 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=49.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.+++|+|+| .|-.|...++.|.+.| ++|++.++... .... +...++.++.++-....+.++|.||...|..
T Consensus 11 ~~~~v~V~G-~G~sG~aa~~~L~~~G-~~v~~~D~~~~----~~~~-l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAG-AGVTGRAVLAALTRFG-ARPTVCDDDPD----ALRP-HAERGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCC-CEEEEEcCCHH----HHHH-HHhCCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 578999999 7889999999999999 99999886321 1222 2223566655543333455789999987743
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.05 Score=48.64 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=32.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|..+++.+...| .+|++++++
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999999999 888887764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.041 Score=48.53 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+|+|.|.| +|.+|+.++..|.++| ++|++++|.
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G-~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANG-HRVRVWSRR 36 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 458999998 8999999999999999 999999885
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.06 Score=36.79 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=30.4
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS 67 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~ 67 (343)
+|+|.| +|++|-.++..|.+.| .+|+++.|...-.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g-~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELG-KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTT-SEEEEEESSSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhC-cEEEEEeccchhh
Confidence 578888 8999999999999999 9999999865433
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=41.92 Aligned_cols=90 Identities=16% Similarity=0.081 Sum_probs=61.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-c------cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-L------LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~d~vi~ 100 (343)
|.++|||+|||+= |+.|++.|.+.| +.|++........ .....+.+..+-+.+. . -.+++.||.
T Consensus 1 ~~~~IlvlgGT~e-gr~la~~L~~~g-~~v~~Svat~~g~-------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VID 71 (248)
T PRK08057 1 MMPRILLLGGTSE-ARALARALAAAG-VDIVLSLAGRTGG-------PADLPGPVRVGGFGGAEGLAAYLREEGIDLVID 71 (248)
T ss_pred CCceEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCCC-------cccCCceEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 4578999999975 999999999999 8877765432222 1224667777777333 2 227999998
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
..=+. . ..-..++.++|++.++.++=
T Consensus 72 ATHPf-------------A--~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 72 ATHPY-------------A--AQISANAAAACRALGIPYLR 97 (248)
T ss_pred CCCcc-------------H--HHHHHHHHHHHHHhCCcEEE
Confidence 75211 1 22356889999999985543
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.28 Score=34.91 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=56.2
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc--hhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN--LKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
+|||.||-.-.-..+-+.+.+.| .+.....|........ +.. .+.++|.||.+.+..+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G-~~~~~hg~~~~~~~~~~~l~~-----------------~i~~aD~VIv~t~~vs-- 60 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYG-GKLIHHGRDGGDEKKASRLPS-----------------KIKKADLVIVFTDYVS-- 60 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcC-CEEEEEecCCCCccchhHHHH-----------------hcCCCCEEEEEeCCcC--
Confidence 48999996677778889999999 7766664422111111 221 2346799998876443
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
-.....+-+.|++.+++++|..+.+
T Consensus 61 -------------H~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 61 -------------HNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred -------------hHHHHHHHHHHHHcCCcEEEECCCC
Confidence 2335578889999999999988654
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=35.86 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=29.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+++++|.|. |.+|+.+++.|.+.+..+|++++|
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35789999997 999999999999995377887764
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.04 Score=50.78 Aligned_cols=73 Identities=19% Similarity=0.362 Sum_probs=47.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|+|+|+ |-+|..+++.|...|..+|++++|..... ..+...+. ...+..+-....+.++|+||.+.+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra-~~la~~~g---~~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERA-EDLAKELG---GEAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHcC---CeEeeHHHHHHHHhhCCEEEECCCC
Confidence 46789999995 99999999999999866899998853211 11222211 1222222112344589999998753
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.043 Score=51.67 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++|+|+|+ |-+|..+++.|...|..+|+++.|+... ...+...+....+.+...+-....+.++|+||.+.+
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~er-a~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEER-VAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC
Confidence 4789999996 9999999999999994479999885322 122222221112222222222234568999998865
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.065 Score=42.01 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+|+|+|.|.+..+|..|+..|.+++ ..|+.+..
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~-atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKG-ATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCC-CeEEeccC
Confidence 478999999999999999999999999 99999865
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.82 Score=40.50 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=32.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+|+|.|.| .|-||+.+++.|..-| .+|+++++.
T Consensus 141 ~gkTvGIiG-~G~IG~~va~~l~afg-m~v~~~d~~ 174 (324)
T COG0111 141 AGKTVGIIG-LGRIGRAVAKRLKAFG-MKVIGYDPY 174 (324)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCC-CeEEEECCC
Confidence 589999999 9999999999999999 999999983
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.089 Score=46.49 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++|.|+| .|.+|..++..|.+.| ++|++++++.
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g-~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKG-LQVVLIDVME 37 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 6899998 6999999999999999 9999998753
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.15 Score=41.79 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=53.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcC-CCe-EEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENE-KNE-VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g-~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
|+|.|.| .|.||..|++.+.+.. ..+ +.+++|..+ ....+...-.-... .|+.+.. .++|.++-||++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~e----k~~~~~~~~~~~~~-s~ide~~-~~~DlvVEaAS~--- 70 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEE----KAKELEASVGRRCV-SDIDELI-AEVDLVVEAASP--- 70 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHH----HHHHHHhhcCCCcc-ccHHHHh-hccceeeeeCCH---
Confidence 5789999 8999999988887652 244 555565322 22211111111111 3333332 678999999852
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
++...++.-+.++|+.+|.+|..+
T Consensus 71 ---------------~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 71 ---------------EAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred ---------------HHHHHHhHHHHhcCCCEEEEechh
Confidence 223445556667777777777654
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.086 Score=47.45 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~ 63 (343)
..++|+|.|.+|.||+.+++.|.+. + ++|+++++.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~-~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQ-LEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 4589999999999999999999976 5 899998873
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.079 Score=41.37 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.++..+|+++|+| -|.+|+.+++.|...| .+|+++...+ -..+.... .+++... .+.++...|++|.+.|
T Consensus 18 ~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~G-a~V~V~e~DP---i~alqA~~--dGf~v~~---~~~a~~~adi~vtaTG 87 (162)
T PF00670_consen 18 NLMLAGKRVVVIG-YGKVGKGIARALRGLG-ARVTVTEIDP---IRALQAAM--DGFEVMT---LEEALRDADIFVTATG 87 (162)
T ss_dssp -S--TTSEEEEE---SHHHHHHHHHHHHTT--EEEEE-SSH---HHHHHHHH--TT-EEE----HHHHTTT-SEEEE-SS
T ss_pred ceeeCCCEEEEeC-CCcccHHHHHHHhhCC-CEEEEEECCh---HHHHHhhh--cCcEecC---HHHHHhhCCEEEECCC
Confidence 4566899999999 9999999999999999 9999987632 22233333 3555553 2345668899998887
Q ss_pred CCC
Q 019309 104 PAS 106 (343)
Q Consensus 104 ~~~ 106 (343)
..+
T Consensus 88 ~~~ 90 (162)
T PF00670_consen 88 NKD 90 (162)
T ss_dssp SSS
T ss_pred Ccc
Confidence 543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.097 Score=45.67 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=30.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++|.|+| +|.+|..++..|...| ++|++++++.
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G-~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHG-FDVTIYDISD 36 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 6899998 6999999999999999 9999999854
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.048 Score=50.35 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=46.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|+|+|+ |-+|..+++.|...|..+|+++.|..... ..+...+. ...+..+-....+.++|+||.+.+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERA-EELAEEFG---GEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHcC---CcEeeHHHHHHHhccCCEEEECCCC
Confidence 46789999995 99999999999999944788888843211 11222221 1222221112334579999998763
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.49 Score=44.73 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=94.0
Q ss_pred CCCEEEEEcCc-hhHHHHHHHHHHhcCCCeEEEEecC-CCCCccchhhhcC---C--CceEEEEcccCCc----------
Q 019309 28 SNMRILVTGGA-GFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIG---H--PRFELIRHDVTEP---------- 90 (343)
Q Consensus 28 ~~~~ilItGat-G~iG~~l~~~L~~~g~~~V~~~~r~-~~~~~~~~~~~~~---~--~~~~~~~~d~~~~---------- 90 (343)
..+-.|||||+ |-||..+++.|++-| .+|++.+-+ ...+.+..+.++. . ..+-++..+...+
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gG-AtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI 473 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGG-ATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI 473 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCC-cEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence 45789999976 899999999999999 888887532 2222333333321 1 1233455544432
Q ss_pred ----------------ccCCCCEEEEecCCCCccc-cccChHHH--HHHHHHHHHHHHHHHHHcC----C----eEEEEe
Q 019309 91 ----------------LLIEVDQIYHLACPASPIF-YKYNPVKT--IKTNVIGTLNMLGLAKRVG----A----RILLTS 143 (343)
Q Consensus 91 ----------------~~~~~d~vi~~a~~~~~~~-~~~~~~~~--~~~nv~~~~~l~~~a~~~~----~----r~i~~S 143 (343)
....+|.+|-+|++-.... ...++... .++-+.....++-..++.+ + ++|.-.
T Consensus 474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg 553 (866)
T COG4982 474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG 553 (866)
T ss_pred ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence 1114888888887542211 11122211 2333344445555555443 2 466655
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC----CceEEEEeccccCCC
Q 019309 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG----IQIRIARIFNTYGPR 207 (343)
Q Consensus 144 S~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~----~~~~i~R~~~v~G~~ 207 (343)
|..- -.......|+-+|...|.++..|..+.+ +.++--++||+-|.+
T Consensus 554 SPNr-----------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 554 SPNR-----------------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred CCCC-----------------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 5421 1223345699999999999999887653 445556677777765
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.037 Score=49.57 Aligned_cols=33 Identities=21% Similarity=0.058 Sum_probs=29.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~ 63 (343)
.+|||.||+|-+|..+++.+...| . +|++++++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s 189 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGS 189 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 899999999999999999999999 7 78888764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.033 Score=48.62 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++|.|+| .|.+|..++..|.++| ++|++++++.
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G-~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSG-FQTTLVDIKQ 34 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCC-CcEEEEeCCH
Confidence 5799999 4999999999999999 9999999853
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.051 Score=49.67 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.++|+|||||++..+|..+++.|.+.| ++|++++..
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~ 37 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAG-HTVILADSL 37 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 356999999999999999999999999 999999764
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.059 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=43.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCC--Ce-EEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NE-VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~--~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
||++|+|.|.| +|.+|+.++..|++++. .+ ++++.|.. .+.........++... .|. +..+.++|+||.+.
T Consensus 1 ~m~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~~~~~~DiViiav 74 (245)
T PRK07634 1 MLKKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSN---VEKLDQLQARYNVSTT-TDW-KQHVTSVDTIVLAM 74 (245)
T ss_pred CCCCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCC---HHHHHHHHHHcCcEEe-CCh-HHHHhcCCEEEEec
Confidence 45678999999 79999999999998862 22 56666532 1222222221233322 222 22345789999876
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.05 Score=40.88 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=37.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
..++|-|.|+ |-+|.+|++.|.+.| +.|..+........+.....+. ...+. ++ +......|++|-+.
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~~--~~~~~--~~-~~~~~~aDlv~iav 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAG-HEVVGVYSRSPASAERAAAFIG--AGAIL--DL-EEILRDADLVFIAV 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--T--T-------T-TGGGCC-SEEEE-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccccc--ccccc--cc-ccccccCCEEEEEe
Confidence 3489999995 999999999999999 9888875321122222222222 22221 22 22345689888765
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.24 Score=45.17 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+|.|.| .|++|..++..|. .| |+|++++++.
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~G-~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-QN-HEVVALDILP 32 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hC-CcEEEEECCH
Confidence 5799997 9999999996555 68 9999999854
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.37 Score=44.25 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=63.7
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCC-----CeEEEEecCCCCCccc----------------------hhhhcCCCceEEE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEK-----NEVIVADNYFTGSKDN----------------------LKKWIGHPRFELI 83 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~-----~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~ 83 (343)
+|||+| .|-||.++++.|...|- .++++++...-....- +...-..-+++..
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 589999 88899999999999994 4888887642111100 0111112234444
Q ss_pred EcccCC--------cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 84 RHDVTE--------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 84 ~~d~~~--------~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
...+.. .-+.++|+|+++.. |+..-..+-+.|...++.+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~iPli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD-----------------NVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence 433321 12346899998752 33334467789999988888888777655
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.046 Score=48.97 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|.|+|.|+| +|.+|..++..|.+.| ++|++++|.
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G-~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAG-ADVTLIGRA 34 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcC-CcEEEEecH
Confidence 458899998 9999999999999999 999999984
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.092 Score=49.58 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
-|+|.|+| +|.+|+.++..|++.| ++|+++++..
T Consensus 4 i~kIavIG-~G~MG~~iA~~la~~G-~~V~v~D~~~ 37 (495)
T PRK07531 4 IMKAACIG-GGVIGGGWAARFLLAG-IDVAVFDPHP 37 (495)
T ss_pred cCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 46899997 9999999999999999 9999999853
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.33 Score=43.08 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=58.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC----------------------CCceEEEE-cc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG----------------------HPRFELIR-HD 86 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----------------------~~~~~~~~-~d 86 (343)
+||.|.|. |-+|+.+++.+.+++..++.+..... ...+.+.-++. ...+++.. .|
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~-~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPA-GDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCC-CCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 79999999 99999999999987645665554211 11111111110 01122221 13
Q ss_pred cCCcccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 87 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
..+....++|+||.|+|... ....+....+.|++.|.+|+.
T Consensus 81 ~~~~~w~gvDiVle~tG~~~------------------s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 81 IADTDWSGCDVVIEASGVMK------------------TKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred hhhCCccCCCEEEEccchhh------------------cHHHHHHHHHCCCEEEEECCC
Confidence 33334458999999997542 223555666788888888887
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.2 Score=43.07 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=51.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcC-CCeEEE-EecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENE-KNEVIV-ADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g-~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
|+|.|.| .|.+|+.+++.|.+.+ ..++.. ++|+. +.........+... ..|+.+. +.++|+|+.|+.+..
T Consensus 2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~----~~a~~~a~~~~~~~-~~~~~el-l~~~DvVvi~a~~~~- 73 (265)
T PRK13304 2 LKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNL----EKAENLASKTGAKA-CLSIDEL-VEDVDLVVECASVNA- 73 (265)
T ss_pred CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCH----HHHHHHHHhcCCee-ECCHHHH-hcCCCEEEEcCChHH-
Confidence 7899999 6999999999999863 255444 44421 11122111112221 2233222 257999999974211
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
...++..+.+.|..++.+|.
T Consensus 74 -----------------~~~~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 74 -----------------VEEVVPKSLENGKDVIIMSV 93 (265)
T ss_pred -----------------HHHHHHHHHHcCCCEEEEch
Confidence 12344455567766666554
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.27 Score=46.17 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|.|. |--|...++.|.+.| .+|++.+...........+ +.. .+..+.+.-....+.++|.||..-|.
T Consensus 7 ~~~~v~v~G~-G~sG~~~~~~l~~~g-~~v~~~d~~~~~~~~~~~~-l~~-~~~~~~~~~~~~~~~~~d~vV~SpgI 79 (468)
T PRK04690 7 EGRRVALWGW-GREGRAAYRALRAHL-PAQALTLFCNAVEAREVGA-LAD-AALLVETEASAQRLAAFDVVVKSPGI 79 (468)
T ss_pred CCCEEEEEcc-chhhHHHHHHHHHcC-CEEEEEcCCCcccchHHHH-Hhh-cCEEEeCCCChHHccCCCEEEECCCC
Confidence 4789999996 899999999999999 9999987432211111112 222 34444444333345579999987664
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.25 Score=46.17 Aligned_cols=75 Identities=23% Similarity=0.199 Sum_probs=50.1
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC--CceEEEEcccCCcccCCCCEEEEec
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH--PRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+|+..-.|+|.|. |-.|..+++.|.++| ++|++.++.... ..... +.. .++++..+.-....+.++|.||...
T Consensus 2 ~~~~~~~~~v~G~-G~sG~s~a~~L~~~G-~~v~~~D~~~~~--~~~~~-l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 2 LMQSDGLHIVVGL-GKTGLSVVRFLARQG-IPFAVMDSREQP--PGLDT-LAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred ccccCCeEEEEee-cHhHHHHHHHHHhCC-CeEEEEeCCCCc--hhHHH-HHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 4566678999995 559999999999999 999999874321 11112 222 3666766533333445789998876
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
|.
T Consensus 77 ~i 78 (448)
T PRK03803 77 GL 78 (448)
T ss_pred CC
Confidence 54
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.087 Score=47.00 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=30.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|||.|.| +||+|-.....|.+.| |+|++++..
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G-HeVv~vDid 32 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG-HEVVCVDID 32 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC-CeEEEEeCC
Confidence 8899999 9999999999999999 999999874
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.091 Score=46.04 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=30.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
-++|.|+| .|.+|..++..|++.| ++|++++++.
T Consensus 4 ~~~V~vIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVG-AGQMGSGIAQLAAAAG-MDVWLLDSDP 37 (295)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 36899999 7999999999999999 9999998854
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.057 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++++|+|+ |.+|++++..|.+.| .+|+++.|.
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G-~~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKG-ARVVIANRT 411 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 35789999997 899999999999999 799999884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 343 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 1e-118 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-115 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 2e-32 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 9e-30 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 1e-27 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 2e-27 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 5e-27 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 6e-27 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 1e-26 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 1e-26 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-26 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 3e-26 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 4e-26 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 7e-26 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 1e-25 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 6e-25 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 2e-23 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-22 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-22 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 3e-22 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-22 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-22 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-22 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-22 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-22 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 1e-21 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 3e-21 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-19 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 3e-19 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 4e-19 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 5e-19 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 5e-19 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 7e-18 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-17 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 2e-16 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 5e-15 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-14 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 2e-14 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-13 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-13 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-13 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 3e-13 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 3e-13 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-13 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-13 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-13 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 6e-13 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 9e-13 | ||
| 4b8z_A | 320 | Crystal Structure Of Human Gdp-l-fucose Synthase Wi | 3e-12 | ||
| 4b8w_A | 319 | Crystal Structure Of Human Gdp-L-Fucose Synthase Wi | 3e-12 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 1e-11 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 2e-11 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 3e-10 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 3e-10 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 3e-10 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 4e-10 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 6e-10 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 7e-10 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 7e-10 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 7e-10 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 8e-10 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 1e-09 | ||
| 1e7r_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y1 | 2e-09 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 2e-08 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 8e-08 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 5e-07 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 2e-06 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 2e-06 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 1e-05 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 3e-05 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 3e-05 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 1e-04 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 2e-04 | ||
| 3sc6_A | 287 | 2.65 Angstrom Resolution Crystal Structure Of Dtdp- | 4e-04 | ||
| 2gn4_A | 344 | Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd | 4e-04 | ||
| 3st7_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 7e-04 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320 | Back alignment and structure |
|
| >pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e Length = 321 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus Anthracis Str. Ames In Complex With Nadp Length = 287 | Back alignment and structure |
|
| >pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344 | Back alignment and structure |
|
| >pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 343 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 0.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 0.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 1e-177 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-175 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-162 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-141 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 1e-119 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 2e-92 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 8e-86 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 3e-84 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 2e-82 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-80 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 4e-76 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 2e-75 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 4e-73 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 4e-71 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 2e-70 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 3e-69 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 3e-67 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-65 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 7e-64 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 7e-62 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 1e-52 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 4e-47 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 1e-45 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 4e-39 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 4e-38 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 2e-37 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 1e-35 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 1e-32 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 1e-32 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 2e-32 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 1e-30 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 5e-25 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 6e-24 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 2e-21 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 1e-20 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 1e-20 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 2e-19 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 3e-19 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 8e-19 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 2e-18 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 3e-18 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 5e-18 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 3e-17 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 2e-16 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 3e-16 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 6e-14 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 3e-11 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 9e-10 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 3e-09 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 1e-08 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 4e-08 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 2e-07 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 1e-06 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 1e-06 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 2e-06 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 7e-06 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 1e-05 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 3e-05 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 3e-05 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 3e-05 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 3e-05 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 4e-05 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 5e-05 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 7e-05 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 7e-05 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 5e-04 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 2e-04 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 5e-04 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 575 bits (1485), Expect = 0.0
Identities = 201/340 (59%), Positives = 248/340 (72%), Gaps = 6/340 (1%)
Query: 4 DGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63
+ + + + + RIL+TGGAGF+GSHL DKLM + +EV V DN+
Sbjct: 7 HHHHSSGRENLYFQGHMEKDR-----KRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNF 60
Query: 64 FTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVI 123
FTG K N++ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN I
Sbjct: 61 FTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTI 120
Query: 124 GTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183
GTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+
Sbjct: 121 GTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETM 180
Query: 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243
+ Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV G+QTR+F Y
Sbjct: 181 CYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQY 240
Query: 244 VSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQR 303
VSD+V+GL+ LM + PVN+GNP E T+LE A+ +K L+ G EI+ + DDP++R
Sbjct: 241 VSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKR 300
Query: 304 KPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 343
KPDI KAK +LGWEP V L +GL FR L N
Sbjct: 301 KPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 340
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 511 bits (1318), Expect = 0.0
Identities = 87/347 (25%), Positives = 150/347 (43%), Gaps = 38/347 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
MR+L+ G GFIG+HL ++L+ + EV D D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 89 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 144 TSEVYGDPLIHPQPETYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
TSEVYG E + V P+ R Y K++ + +++ Y + G+Q + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 202 NTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
N GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236
Query: 256 EGE----NTGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVENTP------------- 297
E + +NIGNP E ++ EL E +
Sbjct: 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGK 296
Query: 298 --DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 342
D RKP I A L WEPK+ +++ + + F + + +
Sbjct: 297 GYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDK 343
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-177
Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 16/344 (4%)
Query: 5 GENQTTTKPPPLPSPLRFSKFF-QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63
G T L +++ N++I +TG GFI SH+ +L E + VI +D
Sbjct: 4 GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASD-- 60
Query: 64 FTGSKDNLKKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPASPI-FYKYNPVKTIK 119
+++ + + F L+ V E + VD +++LA + F + N +
Sbjct: 61 -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 120 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETY--WGNVNPIGVRSCYDEG 176
N + + NM+ A+ G R S++ +Y + + P + +
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLE 179
Query: 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRGE-PLTVQK 233
K E L Y++ GI+ RI R N YGP GR + F +A +
Sbjct: 180 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG 239
Query: 234 PGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
G QTRSF ++ + V+G++RL + + PVNIG+ +M E+AE V + I +
Sbjct: 240 DGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHI 299
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
P+ R R D + KE LGW P ++L++GL + + ++
Sbjct: 300 PG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI 342
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 489 bits (1260), Expect = e-175
Identities = 98/374 (26%), Positives = 160/374 (42%), Gaps = 48/374 (12%)
Query: 1 MANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
MA+ + T P ++L+ G GFIG HL +++E + +
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMKA-----KKVLILGVNGFIGHHLSKRILE-TTDWEVFG 54
Query: 61 DNYFTGSKDNLKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNP 114
+ T +L + H R D+T E + + D I L A+P Y P
Sbjct: 55 MDMQTDRLGDL---VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQP 111
Query: 115 VKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLIHPQPETY-WGNVNPIGVR 170
++ + + L ++ A + G ++ STSEVYG D P +G +N R
Sbjct: 112 LRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--R 169
Query: 171 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQAL 224
Y K++ + +++ Y G+ + R FN GP ++ RVV+ F+ +
Sbjct: 170 WIYACSKQLMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV 228
Query: 225 RGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGP-VNIGNP-GEFTMLELAET 279
RGE +++ G+Q R+F YV D + L++++E N TG NIGNP F++ ELA
Sbjct: 229 RGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANK 288
Query: 280 VKELINPGIE-------IKMVENTP--------DDPRQRKPDISKAKELLGWEPKVKLRD 324
+ EL E +K+VE T D + R P I + LGW P+ D
Sbjct: 289 MLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDD 348
Query: 325 GLPLMEEDFRSRLG 338
L + E +R +
Sbjct: 349 ALRQIFEAYRGHVA 362
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 457 bits (1179), Expect = e-162
Identities = 95/361 (26%), Positives = 154/361 (42%), Gaps = 26/361 (7%)
Query: 3 NDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62
+ + + +P + SK +N ++V GGAGF+GS+LV +L+E N+V V DN
Sbjct: 8 HHHSSGLVPRGSHMPVIMNASKL--ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN 65
Query: 63 YFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKYNPVKT 117
+ K N+ HP +T+ L+ E D ++HLA ++P+
Sbjct: 66 LLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLAD 122
Query: 118 IKTNVIGTLNMLGLA---KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYD 174
+ N + TL + KR+ + + + + V+ S Y
Sbjct: 123 HENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYS 182
Query: 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR-----------VVSNFIAQA 223
K E YH+QH + AR N YGP + GR V FI +A
Sbjct: 183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKA 242
Query: 224 LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME-GENTGPVNIGNPGEFTMLELAETVKE 282
L+G PL ++ G TR F +V D+ +GLI G G NI + E ++ +LA + E
Sbjct: 243 LKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINE 302
Query: 283 LINPGIEIKMVENTP-DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPK 341
+ E+ + P D+ +R KA+ LG+ V + DGL E ++ L V +
Sbjct: 303 ITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAVIE 362
Query: 342 R 342
+
Sbjct: 363 Q 363
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 400 bits (1031), Expect = e-141
Identities = 87/315 (27%), Positives = 139/315 (44%), Gaps = 21/315 (6%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK---DNLKKWIGHPRFELIR 84
RIL+TGGAGFIG HL L+ EV V D+ + K++ P EL
Sbjct: 6 LKHRILITGGAGFIGGHLARALVA-SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEE 64
Query: 85 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
D+++ V +YHLA S P+ + NV ++L L VG ++++ S
Sbjct: 65 RDLSD-----VRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI-QIRIARIFN 202
T EVYG P PE +P+ RS Y K E + + R ++ I R FN
Sbjct: 119 TCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
Query: 203 TYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262
YGP +V A L L V+ G Q R F Y++D+VD L+ L
Sbjct: 174 VYGPGE--RPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSV 231
Query: 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEP-KVK 321
VN G+ ++ ++ ++ +P E+ + P++ + + D + +G +
Sbjct: 232 VNFGSGQSLSVNDVIRILQAT-SPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIG 290
Query: 322 LRDGLPLMEEDFRSR 336
+ +G+ L E ++SR
Sbjct: 291 IEEGIRLTLEWWQSR 305
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 344 bits (886), Expect = e-119
Identities = 100/324 (30%), Positives = 152/324 (46%), Gaps = 30/324 (9%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MRI+VTGGAGFIGSHLVDKL+E EV+V DN +G ++ + +P EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 90 PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145
I+ D ++H A P+ NV+ T N+L A++ G ++ S+S
Sbjct: 55 YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
VYGD + P PE P S Y K E + Y R G++ R N G
Sbjct: 115 TVYGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
Query: 206 PRMNIDDGRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLME-----GEN 259
PR+ V+ +FI + R L V GTQ +S+ YV D V+ + +
Sbjct: 170 PRL---RHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 226
Query: 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD------DPRQRKPDISKAKEL 313
+N+GN +L++A+ V E++ EI++V +TPD D + ++K +L
Sbjct: 227 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKL 286
Query: 314 LGWEPKVKLRDGLPLMEEDFRSRL 337
GW P + + + ED L
Sbjct: 287 TGWRPTMTSAEAVKKTAEDLAKEL 310
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 2e-92
Identities = 74/315 (23%), Positives = 111/315 (35%), Gaps = 29/315 (9%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
+++I VTGG GF+G ++V+ + + N I+ N +E D T
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKAIND--------YEYRVSDYT 52
Query: 89 EPLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 142
LI VD + HLA + N I T N+ + I+
Sbjct: 53 LEDLINQLNDVDAVVHLAATRGSQ-----GKISEFHDNEILTQNLYDACYENNISNIVYA 107
Query: 143 STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFN 202
ST Y D P E P Y K E + Y R+ G+ I+ R +
Sbjct: 108 STISAYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAH 162
Query: 203 TYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262
YG + +++ F QA GE LT+ R F Y D +I ++ E
Sbjct: 163 LYGFNE--KNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSG 220
Query: 263 V-NIGNPGEFTMLELAETVKELINPGIEIK-MVENTPDDPRQRKPDISKAKELLGWEPKV 320
NIG+ T E+A T+ + N + D SKAKELL +
Sbjct: 221 TFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDY 280
Query: 321 KLRDGLPLMEEDFRS 335
+ + R
Sbjct: 281 NFATAVEEIHLLMRG 295
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 8e-86
Identities = 91/319 (28%), Positives = 147/319 (46%), Gaps = 26/319 (8%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
I+VTGGAGFIGSH+VDKL E+ NE++V DN +G+++ + + L++ D+
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFV-----NEAARLVKADLAA 54
Query: 90 PLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
+ + ++++H+A I + NP + + NV+ T +L ++ G RI+ TS
Sbjct: 55 DDIKDYLKGAEEVWHIAANPDVRIGAE-NPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS 113
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
TS VYG+ + P PE Y +PI S Y K E L+ Y +Q I R N
Sbjct: 114 TSTVYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
G R G + + E L + G Q +S+ Y+SD VD ++ + G+ +
Sbjct: 169 IGRRS--THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226
Query: 264 -NIGNPGEFTMLELAETVKELINPGIEIKMVENTPD---DPRQRKPDISKAKELLGWEPK 319
NIG+ + + +AE V E + + D I K K LGW+P+
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPR 285
Query: 320 VKLRDGLPLMEEDFRSRLG 338
+ + + D L
Sbjct: 286 YNSEEAVRMAVRDLVEDLD 304
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 3e-84
Identities = 91/366 (24%), Positives = 160/366 (43%), Gaps = 42/366 (11%)
Query: 15 PLPSPLRF----SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN 70
L R + + R+L+ G GFIG+HL ++L+ + EV D D
Sbjct: 297 GLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDA 352
Query: 71 LKKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 124
+ +++ HP F + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 125 TLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNV-NPIG-VRSCYDEGKRVAET 182
L ++ + RI+ STSEVYG E + + P+ R Y K++ +
Sbjct: 413 NLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDR 472
Query: 183 LMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGT 236
+++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G
Sbjct: 473 VIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGK 532
Query: 237 QTRSFCYVSDMVDGLIRLMEGEN---TGPV-NIGNPG-EFTMLELAETVKELIN------ 285
Q R F + D ++ L R++E G + NIGNP E ++ EL E +
Sbjct: 533 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRH 592
Query: 286 ---PGIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSR 336
P ++VE++ D RKP I A L WEPK+ +++ + + F
Sbjct: 593 HFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
Query: 337 LGVPKR 342
+ + +
Sbjct: 653 VDLTDK 658
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 2e-82
Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 28/326 (8%)
Query: 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW------IG 76
+ L+TG AGFIGS+L++ L++ +V+ DN+ TG + NL +
Sbjct: 21 KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 79
Query: 77 HPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 131
F+ I+ D+ VD + H A S +P+ + TN+ G LNML
Sbjct: 80 WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 139
Query: 132 AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 190
A+ ++S YGD P+ E G P+ S Y K V E + R
Sbjct: 140 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK--PL---SPYAVTKYVNELYADVFSRC 194
Query: 191 HGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248
+G R FN +G R + + V+ + + ++G+ + + G +R FCY+ + V
Sbjct: 195 YGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTV 254
Query: 249 DGLIRLMEGENTGP---VNIGNPGEFTMLELAETVKEL-----INPGIEIKMVENTPDDP 300
+ NI G ++ +L +++ ++ E + D
Sbjct: 255 QANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDV 314
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGL 326
R DISKA +LLG+ PK + G+
Sbjct: 315 RHSLADISKAAKLLGYAPKYDVSAGV 340
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 2e-80
Identities = 71/309 (22%), Positives = 121/309 (39%), Gaps = 34/309 (11%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
++ +TG G IGSH+ + L+E ++V+ DN+ TG +++LK HP + + +
Sbjct: 22 KKVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLK---DHPNLTFVEGSIAD 77
Query: 90 PLLIE-------VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 140
L+ D + H A P + TN +G N++ AK+ R +
Sbjct: 78 HALVNQLIGDLQPDAVVHTAASYKDP----DDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133
Query: 141 LTSTSEVYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
T+ YG P+ P + NP S Y K E Y G+ R
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED----YLEYSGLDFVTFR 185
Query: 200 IFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259
+ N GPR + F + G+ V R F +V D+ +R ++G
Sbjct: 186 LANVVGPRNVSG---PLPIFFQRLSEGKKCFV---TKARRDFVFVKDLARATVRAVDGVG 239
Query: 260 TGPVNIGNPGEFTMLELAETVKEL--INPGIEIKMVENTPDDPRQRKPDISKAKELLGWE 317
G + + + + EL + V E + E ++ E PDD D S+ + G
Sbjct: 240 HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKI 299
Query: 318 PKVKLRDGL 326
L++ +
Sbjct: 300 EFTPLKETV 308
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 4e-76
Identities = 93/325 (28%), Positives = 147/325 (45%), Gaps = 34/325 (10%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW------IGHPRF 80
S L+TG AGFIGS+L++KL++ VI DN+ TG + NL + RF
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81
Query: 81 ELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLA 132
I D+ + E VD + H A S +P+ T TN+ G LN+L A
Sbjct: 82 CFIEGDIRDLTTCEQVMKGVDHVLHQAALGS---VPRSIVDPITTNATNITGFLNILHAA 138
Query: 133 KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 191
K ++S YGD P+ E GN P+ S Y K V E Y R +
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALPKVEENIGN--PL---SPYAVTKYVNEIYAQVYARTY 193
Query: 192 GIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249
G + R FN +G R + + V+ + A L+G+ + + G +R FCY+ +++
Sbjct: 194 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQ 253
Query: 250 GLIRLMEGENTGP---VNIGNPGEFTMLELAETVKELINPG-----IEIKMVENTPDDPR 301
I +++ N+ T+ EL+ + + +N + IK E D R
Sbjct: 254 MNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVR 313
Query: 302 QRKPDISKAKELLGWEPKVKLRDGL 326
+ D++KA +LL + P +K+R+GL
Sbjct: 314 HSQADVTKAIDLLKYRPNIKIREGL 338
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 2e-75
Identities = 70/318 (22%), Positives = 131/318 (41%), Gaps = 31/318 (9%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDNLKKW--------IGHP 78
N IL+TGGAGF+GS+L E + K +V+V D + + + + + +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 79 RFELIRHDVTEPLLIE------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGL 131
+ E+I D+ PL + D ++H A + + N +KTN LN+L +
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM---LNQELVMKTNYQAFLNLLEI 125
Query: 132 AKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 191
A+ A+++ S++ VYG+ P N +P + Y K + + + +
Sbjct: 126 ARSKKAKVIYASSAGVYGNTKA-PNVVGK--NESPE---NVYGFSKLCMDEFVLSHS--N 177
Query: 192 GIQIRIARIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248
R FN YGPR + +V A+ + + + + G Q R F Y+ D++
Sbjct: 178 DNVQVGLRYFNVYGPREF-YKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVI 236
Query: 249 DGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDIS 308
++ M+ + +G N+G + E+ +KE + + + + I
Sbjct: 237 QANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHIE 296
Query: 309 KAKELLGWEPKVKLRDGL 326
L + P L G+
Sbjct: 297 PTILDLDYTPLYDLESGI 314
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 4e-73
Identities = 79/330 (23%), Positives = 126/330 (38%), Gaps = 36/330 (10%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
ILVTG +G IG+ LV L E + ++A + + I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52
Query: 92 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
I+ +D I+HLA S K +P K N+ GT N+L AK+ ++++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 144 TSEVYGDPL-IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFN 202
T V+G + P P R+ + K AE L Y+ + G+ +R R
Sbjct: 112 TIGVFGPETPKNKVPSITI--TRP---RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 203 TYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
+ G A++ E + Y+ D + L+ L E +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRD 226
Query: 261 GPV-----NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP---DISKAKE 312
V N+ FT EL +KE I P EI+ E+ D P D S+A
Sbjct: 227 KLVLRNGYNVTA-YTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDSSEASN 284
Query: 313 LLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 342
G+ + L + M + +LG+ +
Sbjct: 285 EWGFSIEYDLDRTIDDMIDHISEKLGIEGK 314
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 4e-71
Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 25/313 (7%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIGHPRFELIRHD 86
I+VTGGAGFIGS++V L + +++V DN G+K NL + + + D
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKED 102
Query: 87 VTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141
++ V+ I+H +S + + + N + +L L
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLY 160
Query: 142 TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
S++ YG P+ + + K + + + + QI R F
Sbjct: 161 ASSAATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYF 215
Query: 202 NTYGPRMNIDD--GRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
N YGPR V + Q GE P + R F YV D+ D + +E
Sbjct: 216 NVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 275
Query: 259 NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP-----DISKAKEL 313
+G N+G + +A+ G +I+ + PD + R D++ +
Sbjct: 276 VSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPF-PDKLKGRYQAFTQADLTNLRAA 333
Query: 314 LGWEPKVKLRDGL 326
+P + +G+
Sbjct: 334 GYDKPFKTVAEGV 346
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 2e-70
Identities = 68/310 (21%), Positives = 120/310 (38%), Gaps = 27/310 (8%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIGHPRFELIRHDVTEP 90
I+VTGGAGFIGS++V L + +++V DN G+K NL + + + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59
Query: 91 LLIE-----VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
++ V+ I+H AC ++ +++ + N + +L L S+
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTY 204
+ YG P+ + Y K + + + + QI R FN Y
Sbjct: 117 AATYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 205 GPRMNIDD--GRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261
GPR V + Q GE P + R F YV D+ D + +E +G
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSG 231
Query: 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP-----DISKAKELLGW 316
N+G + +A+ G +I+ + PD + R D++ +
Sbjct: 232 IFNLGTGRAESFQAVADATLAYHKKG-QIEYIPF-PDKLKGRYQAFTQADLTNLRAAGYD 289
Query: 317 EPKVKLRDGL 326
+P + +G+
Sbjct: 290 KPFKTVAEGV 299
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 3e-69
Identities = 55/308 (17%), Positives = 104/308 (33%), Gaps = 51/308 (16%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M I++TG GF+G +L L + + ++ L+ +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK--EEELESALL------------- 45
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149
+ D I HLA P + + NV ++L + R + + +S +
Sbjct: 46 ----KADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97
Query: 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209
NP Y E K E L+ +Y ++G + I R N +G
Sbjct: 98 TQD------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCK 139
Query: 210 IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT---GPVNIG 266
+ V++ F + R E + V + YV D+V + R +EG T G +
Sbjct: 140 PNYNSVIATFCYKIARNEEIQVNDRN-VELTLNYVDDIVAEIKRAIEGTPTIENGVPTVP 198
Query: 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
N + T+ E+ + + + ++ + + L + P L
Sbjct: 199 NVFKVTLGEIVDLLYKFKQSRLDRTL------PKLDNLFEKDLYSTYLSYLPSTDFSYPL 252
Query: 327 PLMEEDFR 334
+ +D
Sbjct: 253 LMNVDDRG 260
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 3e-67
Identities = 86/317 (27%), Positives = 134/317 (42%), Gaps = 37/317 (11%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MR+LVTGGAGFIGSH+V+ L+ EV V DN TG ++N+ R D+ +
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRD 54
Query: 90 PLLIE-------VDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA- 137
+E + H A S +PV + N++G LN+L ++ G
Sbjct: 55 KEGVERAFREFRPTHVSHQAAQASVKVSVE----DPVLDFEVNLLGGLNLLEACRQYGVE 110
Query: 138 RILLTSTSE-VYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
+++ ST +YG+ P ET+ P S Y K E + Y + +G++
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKW 165
Query: 196 RIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTV-----QKPGTQTRSFCYVSDMVD 249
R N YGPR + + VV+ F + L+G P+T+ R + YV D+ +
Sbjct: 166 VSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
Query: 250 GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISK 309
+ G N+G T E+ V E E++ P D + K
Sbjct: 226 AHALALFSLE-GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLK 284
Query: 310 AKELLGWEPKVKLRDGL 326
GW PKV ++G+
Sbjct: 285 LMA-HGWRPKVGFQEGI 300
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 1e-65
Identities = 67/327 (20%), Positives = 109/327 (33%), Gaps = 39/327 (11%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N +IL+ G G IG+ L KL + E ++A + + D + +
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------GPFEVVNAL 55
Query: 89 EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARIL 140
+ IE + IY +A S + NP N+ ++L LAK +I
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Query: 141 LTSTSEVYGDPLIHPQPETYWGNV-NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIAR 199
S+ V+G P+ T + P + Y K+ E YH +G+ +R R
Sbjct: 115 WPSSIAVFGPTT--PKENTPQYTIMEPS---TVYGISKQAGERWCEYYHNIYGVDVRSIR 169
Query: 200 IFNTYGPRMNIDDGR--VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
G + +A+ + Y+ D +D I +M+
Sbjct: 170 YPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKA 229
Query: 258 ENT----GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP-------D 306
FT E+A +K+ I P I D RQ+ D
Sbjct: 230 PVEKIKIHSSYNLAAMSFTPTEIANEIKKHI-PEFTITYEP----DFRQKIADSWPASID 284
Query: 307 ISKAKELLGWEPKVKLRDGLPLMEEDF 333
S+A+E W+ L M E
Sbjct: 285 DSQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 7e-64
Identities = 78/314 (24%), Positives = 127/314 (40%), Gaps = 41/314 (13%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S+MRIL+TGGAG +GS+L++ + + +E++V DN+ TG ++ L +I V
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPP---VAGLSVIEGSV 74
Query: 88 TEPLLIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
T+ L+E + H A P NV G++N+ A + G
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAG 127
Query: 137 A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
R+L T+ YG P P P P + Y K E + + +
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGE----AFLMMSDVPV 178
Query: 196 RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR-L 254
R+ N GPR+ I G + F + G+ R F +SD + L
Sbjct: 179 VSLRLANVTGPRLAI--G-PIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFLAIADLSL 232
Query: 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGI--EIKMVENTPDDPRQRKPDISKAKE 312
EG TG N+ ++ E+ + V + + + + +V DD D SK +
Sbjct: 233 QEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTET 292
Query: 313 LLGWEPKVKLRDGL 326
GW+ KV +D +
Sbjct: 293 EFGWKAKVDFKDTI 306
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 7e-62
Identities = 64/338 (18%), Positives = 121/338 (35%), Gaps = 44/338 (13%)
Query: 26 FQSNMRILVTGGAGFIGSHLVDKLME------NEKNEVIVADNYFTGSKDNLKKWIGHPR 79
+ M I + G AG +G L +L++ + + D + +
Sbjct: 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGA 65
Query: 80 FELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
+ D++ P E D I+HLA S + K + N+ GT + +
Sbjct: 66 VDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIR 124
Query: 134 RVGA------RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY 187
R++ TS+ V+G PL +P P+ + P+ + Y K + E L+ DY
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSDY 179
Query: 188 HRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245
R+ R+ + SN + + L G+ + P +
Sbjct: 180 SRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPR 239
Query: 246 DMVDGLIRLME--GENTGPVNIGN-PGE-FTMLELAETVKELINPGIEIKMVENTPDDPR 301
V LI E GP + PG T+ E E ++++ + ++ P++
Sbjct: 240 SAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVA-GEKAVALIRREPNEMI 298
Query: 302 QR-------KPDISKAKELLGWEPKVKLRDGLPLMEED 332
R + +A+E LG+ + + + + ED
Sbjct: 299 MRMCEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIED 335
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-52
Identities = 74/365 (20%), Positives = 112/365 (30%), Gaps = 71/365 (19%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN---------------- 70
R++V GG G+ G L + EV + DN D+
Sbjct: 9 HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67
Query: 71 LKKW--IGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASP-----IFYKYNPVK 116
+ +W + EL D+ + + D + H + + V
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125
Query: 117 TIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLIHPQPETY---------WGNVN 165
T NVIGTLN+L K ++ T YG P I E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGYITITHNGRTDTLPY 184
Query: 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRM---------------NI 210
P S Y K + + GI+ YG + +
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIG 266
G ++ F QA G PLTV G QTR + + D V + + N
Sbjct: 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 267 NPGEFTMLELAETVKEL---INPGIEIKMVENT--PDDPRQRKPDISKAKELLGWEPKVK 321
+F++ ELA V + + ++ V N + +K E LG EP
Sbjct: 305 T-EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYL 362
Query: 322 LRDGL 326
L
Sbjct: 363 SDSLL 367
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 4e-47
Identities = 87/336 (25%), Positives = 134/336 (39%), Gaps = 47/336 (13%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTGSKDNLKKWIGHPRFELIRHDVT 88
++L+TGG GF+GS+L + ++IV DN G+ DNL FE + D+
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60
Query: 89 EPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAKR- 134
+ D +HLA S I NP + NV GTLN+L ++
Sbjct: 61 NKNDVTRLITKYMPDSCFHLA--GQVAMTTS-I---DNPCMDFEINVGGTLNLLEAVRQY 114
Query: 135 -VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEG------------KRVAE 181
I+ +ST++VYGD L + + + YDE K A+
Sbjct: 115 NSNCNIIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAAD 173
Query: 182 TLMFDYHRQHGIQIRIARIFNTYGPR-MNIDDGRVVSNFIAQALR-----GEPLTVQKPG 235
M DY R G+ + R + YG R D V F +A+ +P T+ G
Sbjct: 174 QYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNG 233
Query: 236 TQTRSFCYVSDMVDGLIRLME--GENTGPV-NIG--NPGEFTMLELAETVKELINPGIEI 290
Q R + DM+ + + G NIG ++LEL + +++ N +
Sbjct: 234 KQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRF 293
Query: 291 KMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
+ D R DI K + W PKV +DG+
Sbjct: 294 TNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGV 329
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-45
Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 36/233 (15%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
R+LVTG AG +GS + L +EV ++D G+ + E++ D+ +
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGAAEAH--------EEIVACDLADA 54
Query: 91 LLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
+ D I HL + P ++ N+IG N+ A+ +G RI+ S
Sbjct: 55 QAVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
Query: 144 TSEVYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFN 202
++ G P P S Y K E L Y+ + I+ RI +
Sbjct: 110 SNHTIGYYPRTTRIDTEV--PRRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 203 TYGPRMNIDD-GRVVSNFIAQALRGEPLTVQKP--------GTQTRSFCYVSD 246
+ + +S L K T S+
Sbjct: 165 CFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESWWDNDK 217
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-39
Identities = 91/322 (28%), Positives = 139/322 (43%), Gaps = 43/322 (13%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVADN--YFTGSKDNLKKWIGHPRFEL 82
MR+LVTGGAGFIGSH V +L+ EVIV D+ Y G++ NL PR
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRF 59
Query: 83 IRHDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLN 127
+ D+ L VD I H A + +F +TNV GT
Sbjct: 60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGAS--VF--------TETNVQGTQT 109
Query: 128 MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD 186
+L A G R++ ST++VYG W +P+ S Y K ++ +
Sbjct: 110 LLQCAVDAGVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARA 164
Query: 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246
YHR +G+ +RI R N YGP + + +++ F+ L G L + G R + + D
Sbjct: 165 YHRTYGLDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222
Query: 247 MVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRK 304
G+ ++ G G + +IG E T EL + + + ++ V + +
Sbjct: 223 HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYS 282
Query: 305 PDISKAKELLGWEPKVKLRDGL 326
D K + LG+ P+V DGL
Sbjct: 283 LDGGKIERELGYRPQVSFADGL 304
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-38
Identities = 52/345 (15%), Positives = 105/345 (30%), Gaps = 55/345 (15%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
++++ V G G +G H + +++++ + S+ + + + E ++
Sbjct: 12 AHVKYAVLGATGLLGHHAARAIRA-AGHDLVLI--HRPSSQ---IQRLAYLEPECRVAEM 65
Query: 88 TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 141
+ +E +D + A + + + + T + RIL
Sbjct: 66 LDHAGLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123
Query: 142 TSTSEVYG-DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
++ P P E + + P G +S Y K + + R +G+ + I
Sbjct: 124 VGSAYAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQAR-NGLPVVIGIP 181
Query: 201 FNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
G D G I GE + ++ GL+ +E
Sbjct: 182 GMVLGEL---DIGPTTGRVITAIGNGEMTHYVAGQR---NVIDAAEAGRGLLMALERGRI 235
Query: 261 GPVNIGNPGEFTMLELAETVKELIN-----------------------------PGIEIK 291
G + M +L + EL+ P ++
Sbjct: 236 GERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDET 295
Query: 292 MVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSR 336
+E + D KA+E LG+ L D L + FR
Sbjct: 296 AIEVM---AGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDN 337
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-37
Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 36/231 (15%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ R+LVTG AG +G + ++L E++ + P E ++ D+
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLA--PMAEILRLADLSPLDPA-------GPNEECVQCDL 52
Query: 88 TEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 141
+ ++ D I HL + + ++ N+IG N+ A+ G RI+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHGQPRIVF 108
Query: 142 TSTSEVYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
S++ G P P Y K E L Y + G + + RI
Sbjct: 109 ASSNHTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 201 FNTYGPRMNI----------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241
+ N D ++ + G P V +
Sbjct: 164 GSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-35
Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 50/326 (15%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADN--YFTGSKDNLKKWIGHPRFELIR 84
+M++LVTGG GFIGS+ + ++E + EVI D Y + NLK PR+ ++
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60
Query: 85 HDVT-----EPLLIEVDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
DV + L+ +VD + HLA A S I +P + +NVIGT +L +
Sbjct: 61 GDVADYELVKELVRKVDGVVHLA--AESHVDRS-I---SSPEIFLHSNVIGTYTLLESIR 114
Query: 134 R--VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 191
R R + ST EVYGD + + + + + S Y K ++ L+ + R +
Sbjct: 115 RENPEVRFVHVSTDEVYGD-I----LKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY 169
Query: 192 GIQIRIARIFNTYG---------PRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242
+ I R N YG P+ I +A G + + G R +
Sbjct: 170 NLNASITRCTNNYGPYQFPEKLIPKT-----------IIRASLGLKIPIYGTGKNVRDWL 218
Query: 243 YVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDP 300
YV D V + ++ + + NI E T LE+ + + L+ G E I++VE+ P
Sbjct: 219 YVEDHVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHD 278
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGL 326
+ D K L W PK +G+
Sbjct: 279 LRYSLDSWKITRDLKWRPKYTFDEGI 304
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 89/330 (26%), Positives = 145/330 (43%), Gaps = 48/330 (14%)
Query: 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADN--YFTGSKDNLKKWIGHPRF 80
F + M ILVTGGAGFIGS+ V ++++ + ++I D Y +G+ +N+K HP +
Sbjct: 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNY 77
Query: 81 ELIRHDVTEPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLN 127
++ ++ L+E V I + A A S I NP+ TNVIGT+
Sbjct: 78 YFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRS-I---ENPIPFYDTNVIGTVT 131
Query: 128 MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD 186
+L L K+ +++ ST EVYG L + P+ S Y K A+ +
Sbjct: 132 LLELVKKYPHIKLVQVSTDEVYGS-L---GKTGRFTEETPLAPNSPYSSSKASADMIALA 187
Query: 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNF--------IAQALRGEPLTVQKPGTQT 238
Y++ + + + + R N YGP + + AL G+ L + G
Sbjct: 188 YYKTYQLPVIVTRCSNNYGPY----------QYPEKLIPLMVTNALEGKKLPLYGDGLNV 237
Query: 239 RSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMVENT 296
R + +V+D + ++ G V NIG E T +E+ E + L+ + I+ V +
Sbjct: 238 RDWLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDR 297
Query: 297 PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
R+ + K K WEPK GL
Sbjct: 298 LGHDRRYAINAEKMKNEFDWEPKYTFEQGL 327
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 89/334 (26%), Positives = 128/334 (38%), Gaps = 60/334 (17%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADN--YFTGSKDNLKKWIGHPRFELIRHD 86
I+VTGGAGFIGS+ V + N + V V D Y G+K NL+ I R EL+ D
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEA-ILGDRVELVVGD 62
Query: 87 VT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNMLGL 131
+ + L + D I H A P+ F I TN IGT +L
Sbjct: 63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPS--PF--------IHTNFIGTYTLLEA 112
Query: 132 AKRVGARILLTSTSEVYGD-PLIHPQPETYWGNV------NPIGVRSCYDEGKRVAETLM 184
A++ R ST EVYGD PL P G S Y K ++ ++
Sbjct: 113 ARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIV 172
Query: 185 FDYHRQHGIQIRIARIFNTYG---------PRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235
+ R G++ I+ N YG PR I L G + G
Sbjct: 173 KAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQ-----------ITNILAGIKPKLYGEG 221
Query: 236 TQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMV 293
R + + +D G+ ++ G IG GE E+ E + E + + V
Sbjct: 222 KNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV 281
Query: 294 ENTPDDPRQRKPDISKAKELLGWEPKV-KLRDGL 326
+ + D SK ++ LGW P+ +GL
Sbjct: 282 TDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGL 315
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 52/335 (15%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
IL+ GGAG+IGSH V KL++ E V+V DN TG +D + + D+
Sbjct: 2 NSILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRD 55
Query: 89 EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 136
+ L +V + + H A P++ NV G L +L +
Sbjct: 56 KAFLRDVFTQENIEAVMHFAA------DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK 109
Query: 137 A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
+ + +ST+ YG+ + E + Y E K E ++ Y + ++
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAIEKMLHWYSQASNLRY 164
Query: 196 RIARIFNTYG--PRMNI-DDGRVVSN---FIAQALRG--EPLTV------QKPGTQTRSF 241
+I R FN G P I +D R ++ + Q G E + + GT R +
Sbjct: 165 KIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224
Query: 242 CYVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP 297
+V D+V L L G + N+GN F++ E+ + V+E+ N I ++
Sbjct: 225 IHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRA 284
Query: 298 DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332
DP + KAKE LGW+P+ + + E
Sbjct: 285 GDPARLVASSQKAKEKLGWDPR---YVNVKTIIEH 316
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 87/357 (24%), Positives = 133/357 (37%), Gaps = 90/357 (25%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN--YFTGSKDNLKKWIGHPRFELIRHDV 87
M+IL+TGGAGFIGS +V +++N ++ V+ D Y G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADI 59
Query: 88 TEPLLIE-------VDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML- 129
+ I D + HLA PA F I+TN++GT +L
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPA--AF--------IETNIVGTYALLE 109
Query: 130 ---------GLAKRVGARILLTSTSEVYGD-----PLIHPQPETYWGNVNPIGVRSCYDE 175
G K+ R ST EVYGD + + + S Y
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSA 169
Query: 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPR---------MNIDDGRVVSNFIAQALRG 226
K ++ L+ + R +G+ + N YGP + I AL G
Sbjct: 170 SKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV-----------ILNALEG 218
Query: 227 EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELIN 285
+PL + G Q R + YV D L ++ G NIG E L++ T+ +L++
Sbjct: 219 KPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLD 278
Query: 286 PGIEIKMVENTPDDPRQRK--------P--------DISKAKELLGWEPKVKLRDGL 326
E P R+ P D K LGW+P G+
Sbjct: 279 --------EIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGI 327
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 72/387 (18%), Positives = 132/387 (34%), Gaps = 99/387 (25%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
S+MR+LV GGAG+IGSH V L+ + + V++ D+ + ++
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 88 TEPL--------LIEVDQIYHLACPA--SPIFYKYNPVKTI------------------- 118
L D + + +F ++ P+ +
Sbjct: 61 GPKPPWADRYAALEVGD----VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKY 116
Query: 119 -KTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIH-------PQPETYWGNVNPIGV 169
NV+G L +L +I+ +S++ ++G+P + P
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINA-----KKSP 171
Query: 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG--PRMNIDDGR------------- 214
S Y E K +AE ++ D +GI+ R FN G DG
Sbjct: 172 ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE-----DGDIGEHYQGSTHLIP 226
Query: 215 -VVSNFIAQALRGEPLTVQKP------------------GTQTRSFCYVSDMVDG----L 251
++ ++ + LT+ + GT R + +V D+ L
Sbjct: 227 IILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL 286
Query: 252 IRLMEGENTGP------VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKP 305
+ + N+G +++ E+ E ++ I ++ DP
Sbjct: 287 DYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVA 346
Query: 306 DISKAKELLGWEPKVKLRDGLPLMEED 332
KA+E+LGW+PK D L + E
Sbjct: 347 ASDKAREVLGWKPK---YDTLEAIMET 370
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 6e-24
Identities = 69/342 (20%), Positives = 123/342 (35%), Gaps = 55/342 (16%)
Query: 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VADNYFTG----SKDNLKKWIG 76
+ F+Q R+ VTG GF G L L + V + T + +
Sbjct: 3 NNSFWQ-GKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETARVADGMQ 60
Query: 77 HPRFELIRHDVTEPLLIEV--DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGL 131
++ + + E + ++H+A A P+ Y PV+T TNV+GT+ +L
Sbjct: 61 SEIGDIRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLLEA 117
Query: 132 AKRVG--ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY-- 187
+ VG ++ ++ + Y + + +G Y K AE + Y
Sbjct: 118 IRHVGGVKAVVNITSDKCYDNKEWIW----GYRENEAMGGYDPYSNSKGCAELVTSSYRN 173
Query: 188 -------HRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
+ QHG + R N G + R+V + + + +P+ ++ P R
Sbjct: 174 SFFNPANYGQHGTAVATVRAGNVIGGG-DWALDRIVPDILRAFEQSQPVIIRNP-HAIRP 231
Query: 241 FCYVSDMVDGLIRLME------GENTGPVNIGNPGE--FTMLELAETVKELINPGIEIKM 292
+ +V + + G + L + E N G + + E + + G ++
Sbjct: 232 WQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQL 291
Query: 293 VENTPDDPRQRKP--------DISKAKELLGWEPKVKLRDGL 326
N P D SKAK LGW P+ L L
Sbjct: 292 DGN-------AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTL 326
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-21
Identities = 84/341 (24%), Positives = 133/341 (39%), Gaps = 74/341 (21%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIG--HPRFELI 83
+MR L+TG AGF+G +L + L E +N EV G + P E+I
Sbjct: 10 HGSMRALITGVAGFVGKYLANHLTE--QNVEVF-------G----TSRNNEAKLPNVEMI 56
Query: 84 RHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLA 132
D+ + ++ ++ D I+HLA S + N T TNV GTL++L
Sbjct: 57 SLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDS--WL--NKKGTFSTNVFGTLHVLDAV 112
Query: 133 KRVG--ARILLTSTSEVYGDPLIH--PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYH 188
+ RIL +SE YG L P E N + S Y K L Y
Sbjct: 113 RDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYV 167
Query: 189 RQHGIQIRIARIFNTYGPRMNIDDGR----VVSNFIAQALRGEPLTVQKPGTQT------ 238
+ +G+ I R FN GP + V +F Q + E + Q+P +
Sbjct: 168 KAYGMDIIHTRTFNHIGPG------QSLGFVTQDFAKQIVDIE-MEKQEPIIKVGNLEAV 220
Query: 239 RSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINP-----GIEIKM 292
R F V D+V L + TG V N+ + G ++++++ ++I
Sbjct: 221 RDFTDVRDIVQAYWLLSQYGKTGDVYNVCS-GI------GTRIQDVLDLLLAMANVKIDT 273
Query: 293 VENT----PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329
N P + + K+ GW+P++ L L +
Sbjct: 274 ELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSLFEI 314
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-20
Identities = 70/343 (20%), Positives = 125/343 (36%), Gaps = 65/343 (18%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ R+ + G G +GS + +L + E+++ L+
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRT---------------RDELNLLDSRA 46
Query: 88 TEPLLIEV--DQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
DQ+Y A I P I N++ N++ A + ++L
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLG 106
Query: 144 TSEVYGDPLIHPQP--ETYW--GNVNP----------IGVRSCYDEGKRVAETLMFDYHR 189
+S +Y P + QP E+ G + P G++ C Y+R
Sbjct: 107 SSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCES------------YNR 152
Query: 190 QHGIQIRIARIFNTYGPRMNID--DGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFC 242
Q+G R N YGP N + V+ + A A + + V GT R F
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFL 212
Query: 243 YVSDMVDGLIRLME----------GENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM 292
+V DM I +ME +N+G + T+ ELA+T+ +++ +
Sbjct: 213 HVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF 272
Query: 293 VENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335
+ PD ++ D+++ +L GW ++ L GL + F
Sbjct: 273 DASKPDGTPRKLLDVTRLHQL-GWYHEISLEAGLASTYQWFLE 314
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 1e-20
Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 64/341 (18%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRH 85
+ ILVTGGAG+IGSH +L+ + +V++ADN ++ + + I
Sbjct: 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHET 62
Query: 86 DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 131
DV++ + + H A A PI Y N N+ L++L +
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRV 115
Query: 132 AKRVGARILLTSTS-EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR- 189
+ + ++ S+S VYG P P ET+ P+ + Y + K +AE ++ D
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAA 170
Query: 190 QHGIQIRIARIFNTYG--PRMNI-DDGRVVSN----FIAQALRG--EPLTV------QKP 234
++ R FN G I +D + N ++AQ G E L V
Sbjct: 171 DPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230
Query: 235 GTQTRSFCYVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEI 290
GT R + +V D+ G L L + + VN+G +++LE+ ++ +
Sbjct: 231 GTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPY 290
Query: 291 KMVENTPDDPRQRKPDI-------SKAKELLGWEPKVKLRD 324
++V R R D+ + A E +GW+ + L
Sbjct: 291 ELV------AR-RPGDVAECYANPAAAAETIGWKAERDLER 324
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 65/327 (19%), Positives = 113/327 (34%), Gaps = 55/327 (16%)
Query: 31 RILVTGGAGFIGSHLVDKLME-----------NEKNEVIVADNYFTGSKDNLKKWIGHP- 78
R+ VTGG GF+GS ++ L+E + + + V+ L G
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVS---------FLTNLPGASE 53
Query: 79 RFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
+ D++ P + I+H A P K V G L +L
Sbjct: 54 KLHFFNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACV 112
Query: 134 RVGA--RILLTS-TSEVYGDPLIHPQP---ETYWGNVNPIGVR----SCYDEGKRVAETL 183
R + TS S V + + E+ W +V+ + Y K +AE
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNG--KDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKA 170
Query: 184 MFDYHRQHGIQ---IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240
+ ++ Q+GI + + I G + S A L + +K
Sbjct: 171 VLEFGEQNGIDVVTLILPFIV---GRFVCPKLP--DSIEKALVL----VLGKKEQIGVTR 221
Query: 241 FCYVS--DMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD 298
F V D+ I L+E G +P + E+++ + P +I V+ +
Sbjct: 222 FHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKY-PEYQILTVDELKE 280
Query: 299 DPRQRKPDISKAK-ELLGWEPKVKLRD 324
R PD++ K G++ K + D
Sbjct: 281 IKGARLPDLNTKKLVDAGFDFKYTIED 307
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 86.3 bits (215), Expect = 3e-19
Identities = 83/340 (24%), Positives = 140/340 (41%), Gaps = 65/340 (19%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDV 87
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59
Query: 88 TEPLLIE-------VDQIYHLAC-------PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMR 112
Query: 134 RVGARILLTSTSE-VYGDPLIHPQPETYWGNVNPIG-VRSCYDEGKRVAETLMFDYHR-Q 190
+ + S+S VYGD P E++ P G +S Y + K + E ++ D + Q
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQ 167
Query: 191 HGIQIRIARIFNTYG--PRMNI-DDGRVVSN----FIAQALRG--EPLTV------QKPG 235
I + R FN G P ++ +D + + N +IAQ G + L + + G
Sbjct: 168 PDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG 227
Query: 236 TQTRSFCYVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK 291
T R + +V D+ DG + +L N+G ++L++ + +
Sbjct: 228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYH 287
Query: 292 MVENTPDDPRQRKPDI-------SKAKELLGWEPKVKLRD 324
PR R+ D+ SKA L W L +
Sbjct: 288 FA------PR-REGDLPAYWADASKADRELNWRVTRTLDE 320
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-19
Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 49/327 (14%)
Query: 31 RILVTGGAGFIGSHLVDKLME----------NEKNEVIVADNYFTGSKDNLKKWIGHPRF 80
V GG GF+ S LV L++ + N+ V+ L +
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSH---------LLELQELGDL 61
Query: 81 ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 135
++ R D+T+ + D ++H+A P + IK + G +N++ R
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNVMKACTRA 120
Query: 136 GA--RILLT-STSEVYGDPLIHPQP---ETYWGNVNPIGVRSC----YDEGKRVAETLMF 185
+ R++LT S + V + L E W ++ + Y K +AE +
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAW 180
Query: 186 DYHRQHGIQ---IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242
+ ++ I + + G + D + ++ E L G Q S
Sbjct: 181 KFAEENNIDLITVIPTLMA---GSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGS 237
Query: 243 Y----VSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD 298
V D+ I + E E+ I ++ ELA+ + + P + K+ + D
Sbjct: 238 VSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRY-P--QYKVPTDFGD 294
Query: 299 DPRQRKPDISKAK-ELLGWEPKVKLRD 324
P + K IS K G+ K + +
Sbjct: 295 FPPKSKLIISSEKLVKEGFSFKYGIEE 321
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 2e-18
Identities = 56/354 (15%), Positives = 109/354 (30%), Gaps = 74/354 (20%)
Query: 2 ANDGENQTTTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVI- 58
A+D L + + +L+TG GF+G +LV +L+ +I
Sbjct: 46 ASDLTLDRFIDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLIC 105
Query: 59 -------------VADNYFTGSKDNLKKW--IGHPRFELIRHDVTEP-----------LL 92
+ + +G + L+ + + R E++ D +EP L
Sbjct: 106 LVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLA 165
Query: 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYG-- 149
VD I A A + Y + NV GT ++ +A ST++V
Sbjct: 166 ETVDLIVDSA--AMVNAFPY--HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAI 221
Query: 150 --------DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
+ P G Y K E L+ + + + + + R
Sbjct: 222 EPSAFTEDADIRVISPTRTVDGGWAGG----YGTSKWAGEVLLREANDLCALPVAVFRCG 277
Query: 202 NTYGPR-----MNIDDGRVVSNFI--AQALRGEPLTVQKPGTQTRSFCYVSDM--VDGLI 252
+N+ D V+ + A P + +P ++ D V +
Sbjct: 278 MILADTSYAGQLNMSDW--VTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVA 335
Query: 253 RLM---------EGENTGPV-NIGNPGE--FTMLELAETVKELINPGIEIKMVE 294
+ ++ NP + + E + + E G I+ ++
Sbjct: 336 EAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA---GYPIRRID 386
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 3e-18
Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 59/343 (17%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRH 85
++ +LVTGGAG+IGSH V +L+EN + +VADN + D++ + +
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68
Query: 86 DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 131
D+ + +E +D + H A P+ Y Y N++GT+ +L L
Sbjct: 69 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLEL 121
Query: 132 AKRVGARILLTSTSE-VYGDPLIHPQ----PETYWGNVNPIGVRSCYDEGKRVAETLMFD 186
++ + S+S VYGD P PE P+G + Y K E ++ D
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILND 176
Query: 187 YHRQHGIQIRIA--RIFNTYG--PRMNI-DDGRVVSN----FIAQ-AL-RGEPLTV---- 231
+ + A R FN G P I +D + N ++AQ A+ R E L +
Sbjct: 177 LYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDD 236
Query: 232 --QKPGTQTRSFCYVSDMVDG----LIRLMEGENTGP----VNIGNPGEFTMLELAETVK 281
+ GT R + +V D+ G L L N+G+ T+ E+
Sbjct: 237 YDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFC 296
Query: 282 ELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRD 324
+ + K+ D +AK L W+ ++++ D
Sbjct: 297 KASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVED 339
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 5e-18
Identities = 48/331 (14%), Positives = 102/331 (30%), Gaps = 60/331 (18%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVADNYFTGSKDNLKKWIGH 77
+LVTG GF+ SH+V++L+E + + + +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFET---- 65
Query: 78 PRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA 132
+ D+ + ++ + H+ AS + + + + + GTLN L A
Sbjct: 66 ----AVVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRAA 118
Query: 133 KRVGA--RILLTSTSEVYGDPLIHPQPETY----WGNVNPIGVRSCYDEG---------- 176
+ R +LTS++ P + + W N +
Sbjct: 119 AATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLWV 175
Query: 177 ----KRVAETLMFDYHRQHGIQIRIARIFN---TYGPRMNIDDGRVVSN-FIAQALRGEP 228
K AE + + ++ + + T G + + ++ ++ GE
Sbjct: 176 YAASKTEAELAAWKFMDENKPHFTLNAV-LPNYTIGTIFDPETQSGSTSGWMMSLFNGEV 234
Query: 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT-GPVNIGNPGEFTMLELAETVKELINPG 287
+ + D+ + + G G F + T ++L P
Sbjct: 235 SPALAL-MPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLY-P- 291
Query: 288 IEIKMVENTPDDPRQR-KPDISKAKELLGWE 317
+ PD + K D + + E+L
Sbjct: 292 -SKTFPADFPDQGQDLSKFDTAPSLEILKSL 321
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 3e-17
Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 37/236 (15%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
+ +I++ G +GF+GS L+++ + + + A + +K + ++ + D
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEAL--NRGFEVTA---VVRHPEKIKI--ENEHLKVKKAD 54
Query: 87 VTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 140
V+ + D + P N + L ++ K+ G R L
Sbjct: 55 VSSLDEVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFL 108
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
+ + ++ N K + E + ++ I
Sbjct: 109 MVGGAGSLFIAPGLRLMDSGEVPENI------LPGVKALGEFYLNFLMKEKEIDWVFFS- 161
Query: 201 FNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256
P ++ G + L + + V G S V D +I +E
Sbjct: 162 -----PAADMRPGVRTGRYR---LGKDDMIVDIVG---NSHISVEDYAAAMIDELE 206
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 62/325 (19%), Positives = 114/325 (35%), Gaps = 46/325 (14%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVADNY-FTGSKDNLKKWIG 76
+ + VTG +GFIGS LV +L+E + N V ++ +L
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL----- 58
Query: 77 HPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLG 130
L + D+ + + ++H+A P F +P IK + G L ++
Sbjct: 59 ----TLWKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMK 112
Query: 131 LAKRVGA--RILLTST--SEVYGDPLIHPQPETYWGNVNPIGVRSC----YDEGKRVAET 182
R++ TS+ + + + E+ W ++ + Y K +AE
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQ 172
Query: 183 LMFDYHRQHGIQ---IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239
+ Y +++ I I + GP + + G
Sbjct: 173 AAWKYAKENNIDFITIIPTLVV---GPFIM-SSMPPSLITALSPITGNEAHYSIIR--QG 226
Query: 240 SFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDD 299
F ++ D+ + I L E I + + +L+LA+ ++E P I D+
Sbjct: 227 QFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKY-PEYNIPTEFKGVDE 285
Query: 300 PRQRKPDISKAKELLGWEPKVKLRD 324
+ SK LG+E K L D
Sbjct: 286 NLKSVCFSSKKLTDLGFEFKYSLED 310
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 3e-16
Identities = 84/348 (24%), Positives = 141/348 (40%), Gaps = 73/348 (20%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-----FTGSK----DNLKKWIGHPR 79
++LVTGGAG+IGSH V +L+E +V DN+ GS +++ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGR-S 59
Query: 80 FELIRHDVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGT 125
E D+ + ++ + H A P+ Y N+ GT
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGT 112
Query: 126 LNMLGLAKRVGARILLTSTSE-VYGDPLIHPQPETYWGNVNPIGVRSC-YDEGKRVAETL 183
+ +L + K G + L+ S+S VYG+P P E + P G + Y + K E +
Sbjct: 113 IQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEM 167
Query: 184 MFDYHR-QHGIQIRIARIFNTYG--PRMNI-DDGRVVSN----FIAQALRG--EPLTV-- 231
+ D + + R FN G I +D + + N +++Q G E L V
Sbjct: 168 IRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFG 227
Query: 232 ----QKPGTQTRSFCYVSDMVDG----LIRLMEGENTGPVNIGNPGEFTMLELAETVKEL 283
+ GT R + +V D+ G L +L E N+G +++L++ + +++
Sbjct: 228 NDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKA 287
Query: 284 INPGIEIKMVENTPDDPRQRKPDI-------SKAKELLGWEPKVKLRD 324
I K+V R R+ D+ S A+E LGW + L
Sbjct: 288 SGKKIPYKVV------AR-REGDVAACYANPSLAQEELGWTAALGLDR 328
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 6e-14
Identities = 46/371 (12%), Positives = 99/371 (26%), Gaps = 82/371 (22%)
Query: 33 LVTGGAGFIGSHLVDKL----MENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
L+ G G IG+ L + L +V ++ W ++ D++
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------ARRTRPAWHEDNPINYVQCDIS 58
Query: 89 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RIL 140
+P L + + H+ + + + N N+L I
Sbjct: 59 DPDDSQAKLSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116
Query: 141 LTSTSEVYGDPLIHP----QPETYWGNVNPIGVRSCYDEGKRVAET-LMFDYHRQHGIQI 195
L + + Y P + + P R Y E ++ + ++ G+
Sbjct: 117 LQTGRKHYMGPFESYGKIESHDPPYTEDLP---RLKYMNFYYDLEDIMLEEVEKKEGLTW 173
Query: 196 RIARIFNTYGPR----MNIDDGRVVSNFIAQALRGEPLTVQKPGTQT-----RSFCYVSD 246
+ R N +G MN+ V I G+ L G +
Sbjct: 174 SVHRPGNIFGFSPYSMMNLVGTLCVYAAI-CKHEGKVLRF--TGCKAAWDGYSDCSDADL 230
Query: 247 MVDGLIRLMEGENT--GPVNIGNPGEFTMLELAETVKE-------LINPGIEIKMVENTP 297
+ + I N+ N F + + E G+++K+ +
Sbjct: 231 IAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMK 290
Query: 298 DDPRQRK--------------------------------PDISKAKELLGWEPKVKLRDG 325
+ ++K+KE G+ ++
Sbjct: 291 GKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNA 349
Query: 326 LPLMEEDFRSR 336
+ ++
Sbjct: 350 FISWIDKAKAY 360
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 62/294 (21%), Positives = 106/294 (36%), Gaps = 75/294 (25%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW-----IGHPRFE 81
N IL+TGG G G V K+++ ++IV + S+D LK+ PR
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV----Y--SRDELKQSEMAMEFNDPRMR 73
Query: 82 LIRHDV-----TEPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLA 132
DV L VD H A P + +YNP++ IKTN++G N++
Sbjct: 74 FFIGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINAC 129
Query: 133 KRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD---YH 188
+ ++++ ST + NPI + Y K ++ L +
Sbjct: 130 LKNAISQVIALSTDKA----------------ANPINL---YGATKLCSDKLFVSANNFK 170
Query: 189 RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR-GEPLTVQKPGTQTRSFCYVSDM 247
Q + R N G R G VV F + + TR + + +
Sbjct: 171 GSSQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPITDI-RMTRFWITLDEG 224
Query: 248 VDGLIRLMEGENTGPVNIGNPGE--------FTMLELAETVKELINPGIEIKMV 293
V +++ ++ + GE M +LA+ + P K++
Sbjct: 225 VSFVLKSLK--------RMHGGEIFVPKIPSMKMTDLAKA----LAPNTPTKII 266
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 44/304 (14%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
+IL+ G G +G L +L + +EV S + + ++ R D
Sbjct: 4 SKILIAG-CGDLGLELARRLTA-QGHEVTG----LRRSAQPMPAGVQTLIADVTRPDTLA 57
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 148
++ +I AS +Y+ + V G N L + + S++ VY
Sbjct: 58 SIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113
Query: 149 GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRM 208
G + E + AE L+ I R YGP
Sbjct: 114 GQEVEEWLDEDTP--PIAKDFSG---KRMLEAEALL------AAYSSTILRFSGIYGP-- 160
Query: 209 NIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VN 264
GR P + + D + L++ +
Sbjct: 161 ----GR----LRMIRQAQTPEQWPARN-AWTNRIHRDDGAAFIAYLIQQRSHAVPERLYI 211
Query: 265 IGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ-RKPDISKAKELLGWEPKVK-L 322
+ + + +L + + I + +K ++ G++
Sbjct: 212 VTDNQPLPVHDLLRWLADRQG----IAYPAGATPPVQGNKKLSNARLLA-SGYQLIYPDY 266
Query: 323 RDGL 326
G
Sbjct: 267 VSGY 270
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 25/227 (11%), Positives = 62/227 (27%), Gaps = 28/227 (12%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M+I + G G GS ++++ +EV + + H +++ D+ +
Sbjct: 1 MKIGIIGATGRAGSRILEEAKN-RGHEVTA----IVRNAGKIT--QTHKDINILQKDIFD 53
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149
L ++ + + +V +++ + + LL
Sbjct: 54 LTLSDLSDQNVVVDAYGI------SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107
Query: 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209
+ Y + A+ L Q + P
Sbjct: 108 QIDEDGNTLLESKGLRE---APYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGER 164
Query: 210 IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256
D ++ + + G+ SF + D ++ +E
Sbjct: 165 TGDYQIGKDHLL------------FGSDGNSFISMEDYAIAVLDEIE 199
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
MR+LV G G + +L+ +L K VA +++ + +++ ++
Sbjct: 20 QGMRVLVVGANGKVARYLLSELK--NKGHEPVA---MVRNEEQGPELRERGASDIVVANL 74
Query: 88 TEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
E +D + A + P KTI ++ G + + A++ G R ++ S
Sbjct: 75 EEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130
Query: 144 T 144
+
Sbjct: 131 S 131
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 57/323 (17%), Positives = 102/323 (31%), Gaps = 94/323 (29%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
MR L+TG +G +G L L +E++EVI N ++L D+T+
Sbjct: 1 MRTLITGASGQLGIELSRLL--SERHEVIKVYN----------SSEIQGGYKL---DLTD 45
Query: 90 PLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR 134
+E D I + A A K K N +++ K
Sbjct: 46 FPRLEDFIIKKRPDVIINAA--A------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKV 97
Query: 135 VGARILLTSTSEVY---GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 191
+ + I+ ST V+ NPI Y K + ET
Sbjct: 98 IDSYIVHISTDYVFDGEKGNYKEEDI------PNPINY---YGLSKLLGETFALQDD--S 146
Query: 192 GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR----GEPLTV--QKPGTQTRSFCYVS 245
I IR + I + + F + G+ + +
Sbjct: 147 LI-IRTSGI---FRNK----------GFPIYVYKTLKEGKTVFAFKGY-YSPI----SAR 187
Query: 246 DMVDGLIRLMEGENTGPVNIGNPG----EFTMLELAETVKELINPGIEIKMVENTPDDPR 301
+ ++ L+E TG +++ E A +KE + ++ E
Sbjct: 188 KLASAILELLELRKTGIIHVAGERISRFEL-----ALKIKEKF--NLPGEVKEVDEVRGW 240
Query: 302 Q-RKP-----DISKAKELLGWEP 318
++P D S+A+++L +
Sbjct: 241 IAKRPYDSSLDSSRARKILSTDF 263
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 81/326 (24%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
N R+LVTG G +G + + +N + V + + ++
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV--------------NLL 47
Query: 89 EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 133
+ + I H C A P + NV + N+ A
Sbjct: 48 DSNAVHHIIHDFQPHVIVH--CAA------ERRPDVVENQPDAASQLNVDASGNLAKEAA 99
Query: 134 RVGARILLTSTSEVY-GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 192
VGA ++ S+ V+ G P E P+ + Y + K E + + +
Sbjct: 100 AVGAFLIYISSDYVFDGTN--PPYREE--DIPAPLNL---YGKTKLDGEKAVLENNLGAA 152
Query: 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR-----GEPLTV---QKPGTQTRSFCYV 244
+ +RI ++ + + + + Q+ T +V
Sbjct: 153 V-LRIPILYGEVEKLEE--------SAVTVMFDKVQFSNKSANMDHWQQ-RFPT----HV 198
Query: 245 SDMVDGLIRLMEGENTGPVNIG-----NPGEFTMLELAETVKELINPGIEIKMVENTPDD 299
D+ +L E P G + T E+A + + + + D
Sbjct: 199 KDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAF--NLPSSHLRPITDS 256
Query: 300 PRQ--RKP-----DISKAKELLGWEP 318
P ++P D SK + L +
Sbjct: 257 PVLGAQRPRNAQLDCSKLETLGIGQR 282
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 24/136 (17%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ +LVTG +G G + KL E V S +K ++ D+
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKI--GGEADVFIGDI 57
Query: 88 TEPLLIE-----VDQIYHLA-------------CPASPIFYKYNPVKTIKTNVIGTLNML 129
T+ I +D + L P F + + + IG N +
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 130 GLAKRVG-ARILLTST 144
AK G I++ +
Sbjct: 118 DAAKVAGVKHIVVVGS 133
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
I V G AG IG + L + V VAD+ L + + D +
Sbjct: 6 WNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDAKD 59
Query: 90 P 90
Sbjct: 60 E 60
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 61/321 (19%), Positives = 102/321 (31%), Gaps = 55/321 (17%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
+L G G+ L L + + G+ N + E IR E
Sbjct: 6 GTLLSFG-HGYTARVLSRALAP-QGWRI-------IGTSRNPDQ------MEAIRASGAE 50
Query: 90 PLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
PLL +D + HL +P + + + + + ST
Sbjct: 51 PLLWPGEEPSLDGVTHLLISTAPDSGGDPVLAAL-------GDQIAARAAQFRWVGYLST 103
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTY 204
+ VYGD ET + P R R + + + + R+ Y
Sbjct: 104 TAVYGDHDGAWVDETTP--LTPTAARG------RWRVMAEQQWQAVPNLPLHVFRLAGIY 155
Query: 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV- 263
GP GR ++ +G + KP Q S +V D+ L M + G V
Sbjct: 156 GP------GR---GPFSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDPGAVY 205
Query: 264 NIGNPGEFTMLELAETVKELIN----PGIEIKMVENTPD----DPRQRKPDISKAKELLG 315
N+ + ++ EL P ++ + TP ++ + KE LG
Sbjct: 206 NVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELG 265
Query: 316 WEPKVK-LRDGLPLMEEDFRS 335
K R GL ++ D +
Sbjct: 266 VRLKYPNYRVGLEALQADAET 286
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 28 SNM--RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRH 85
+M +L+ G+GF+ ++D L N+ V VA + N + + I
Sbjct: 20 RHMGKNVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISL 74
Query: 86 DVTEP 90
DVT+
Sbjct: 75 DVTDD 79
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 21 RFSKFFQSN-MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPR 79
R S F + + + +TG G +G L +L +EVI + K P
Sbjct: 138 RTSTLFDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQ----LVRKEPKPGKRFWDPL 192
Query: 80 FELIRHDVTEPLLIEVDQIYHLA 102
LL D + HLA
Sbjct: 193 NPASD------LLDGADVLVHLA 209
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-05
Identities = 46/348 (13%), Positives = 97/348 (27%), Gaps = 109/348 (31%)
Query: 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK----KWIGHPR 79
F + +IL+T + D L + + + T + D +K K++
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 80 FELIRHDV--TEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 133
+L +V T P + E + A+ +K+ + T + +LN+L A
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPA- 369
Query: 134 RVGARILLTSTSEVYGDPLIHPQ----P----ETYWGNVNPIGVRSCYDE--GKRVAETL 183
+++ + P P W +V V ++ + E
Sbjct: 370 ---------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 184 MFDY-HRQHGIQIRI-----------ARIFNTYGPRMNID---------DGRVVS----- 217
+ I + + I + Y D D S
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 218 --------------------NFIAQALRGEPLTVQKPGTQTRSFC-------YVSD---- 246
F+ Q +R + G+ + Y+ D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 247 ---MVDGLIRLMEGENTGPVNIGNPGEFT-MLELAETVKELINPGIEI 290
+V+ ++ + + ++T +L +A L+ I
Sbjct: 541 YERLVNAILDFLPKIEENLIC----SKYTDLLRIA-----LMAEDEAI 579
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 3e-05
Identities = 60/318 (18%), Positives = 112/318 (35%), Gaps = 80/318 (25%)
Query: 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
R+++TG G +G L ++L E+ ++ D + L D+T
Sbjct: 5 KERVIITGANGQLGKQLQEEL-NPEEYDIYPFD-----------------KKLL---DIT 43
Query: 89 EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 133
++ I H C A Y N IG N+ ++
Sbjct: 44 NISQVQQVVQEIRPHIIIH--CAA------YTKVDQAEKERDLAYVINAIGARNVAVASQ 95
Query: 134 RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
VGA+++ ST V+ E N PI + Y K E + + H ++ I
Sbjct: 96 LVGAKLVYISTDYVFQGDRPEGYDEF--HNPAPINI---YGASKYAGEQFVKELHNKYFI 150
Query: 194 QIRIARIFNTYGPRMNIDDGRVVSNFIAQALR----GEPLTV---QKPGTQTRSFCYVSD 246
+R + ++ YG +NF+ +R E ++V Q G+ T YV+D
Sbjct: 151 -VRTSWLYGKYG-----------NNFVKTMIRLGKEREEISVVADQI-GSPT----YVAD 193
Query: 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ-RKP 305
+ + +L+ G ++ N G + E A+ + N + + V T + +P
Sbjct: 194 LNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVS-TEEFGAAAARP 252
Query: 306 -----DISKAKELLGWEP 318
+ + +
Sbjct: 253 KYSIFQHNMLRLNGFLQM 270
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 30 MRILVTGGAGFIGSHLVDKLME 51
M+I V G G GS +V +
Sbjct: 1 MKIAVLGATGRAGSAIVAEARR 22
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 32/159 (20%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
M+I + G G +G L+ L ++ + + + + + + DV
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLST-TDYQIYA----GARKVEQVPQ---YNNVKAVHFDVDW 52
Query: 89 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 142
L +D I +++ +K ++ G + ++ A++ R +L
Sbjct: 53 TPEEMAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104
Query: 143 STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181
ST + Y K A+
Sbjct: 105 STIFSLQPEKWIGAGFDALKD---------YYIAKHFAD 134
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 55/235 (23%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
I + G AG I L L+ + + + I H R +I P
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64
Query: 91 LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145
+E + ++ + +++ R R ++ +
Sbjct: 65 GXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVSM 108
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQ---IRIARIFN 202
P W N Y +G+R A + R+ + +R+ ++N
Sbjct: 109 AGLSGEF--PVALEKWTFDNLPIS---YVQGERQAR----NVLRESNLNYTILRLTWLYN 159
Query: 203 -------TYGPRMNIDDGRVVS-----NFIAQALR--------GEPLTVQKPGTQ 237
P + VS I L + V +PGT
Sbjct: 160 DPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEPGTH 214
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 57/244 (23%)
Query: 21 RFSKFFQSNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPR 79
R + +FQ +M +L+ G G I H++++L + + + + F + K
Sbjct: 14 RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL----FARQPAKIHK-PYPTN 68
Query: 80 FELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 134
++I DV + D +Y T + I +++ K
Sbjct: 69 SQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLDIQANSVIAAMKA 114
Query: 135 VG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
R++ + +Y + P W N + R A D G+
Sbjct: 115 CDVKRLIFVLSLGIYDEV---PGKFVEWNNAVIGE----PLKPFRRAA----DAIEASGL 163
Query: 194 Q---IRIARIFN--TYGPRMNIDDGRV---------VSNFIAQAL------RGEPLTVQK 233
+ +R A + + + + V+ I + GE + + +
Sbjct: 164 EYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQ 223
Query: 234 PGTQ 237
PGT
Sbjct: 224 PGTD 227
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 64/319 (20%), Positives = 111/319 (34%), Gaps = 81/319 (25%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+M+IL+TG G +G + +L + + EVI D +L D+
Sbjct: 11 HHMKILITGANGQLGREIQKQL-KGKNVEVIPTD-----------------VQDL---DI 49
Query: 88 TEPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLA 132
T L + + + + C A + K N IG N+ A
Sbjct: 50 TNVLAVNKFFNEKKPNVVIN--CAA------HTAVDKCEEQYDLAYKINAIGPKNLAAAA 101
Query: 133 KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 192
VGA I+ ST V+ P E VNP Y + K E + + ++
Sbjct: 102 YSVGAEIVQISTDYVFDGEAKEPITEF--DEVNPQSA---YGKTKLEGENFVKALNPKYY 156
Query: 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR----GEPLTV---QKPGTQTRSFCYVS 245
I +R A + YG G NF+ + + L V Q GT T
Sbjct: 157 I-VRTAWL---YGD------GN---NFVKTMINLGKTHDELKVVHDQV-GTPT----STV 198
Query: 246 DMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQ-RK 304
D+ ++++++ +N G + G + + A + L +++ T + PR ++
Sbjct: 199 DLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCT-TEEFPRPAKR 257
Query: 305 P-----DISKAKELLGWEP 318
P + G
Sbjct: 258 PKYSVLRNYMLELTTGDIT 276
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
+I + G G G + + ++ EV V L G ++ DV +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTV----LVRDSSRLPS-EGPRPAHVVVGDVLQ 57
Query: 90 P-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143
+ D + L N + G N++ K G +++ +
Sbjct: 58 AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 144 TSEVYGDPLIHP 155
++ + DP P
Sbjct: 111 SAFLLWDPTKVP 122
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 27/162 (16%)
Query: 16 LPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EV--IV--ADNYFTGSKDN 70
+ LVTG G G++L L+E K V +V +
Sbjct: 1 MRGSHHHHHHGSMTRSALVTGITGQDGAYLAKLLLE--KGYRVHGLVARRSSDTRWRLRE 58
Query: 71 LKKWIGHPRFELIRHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIK 119
L + D+ + +I+ ++Y+LA AS + PV T
Sbjct: 59 LGI---EGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS--WN--QPVTTGV 111
Query: 120 TNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLIHPQPET 159
+ +G ++L ++ R STSE++G Q E
Sbjct: 112 VDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 153
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 278 ETVKELINP-----GIEIKMVENTPDDPRQRKP--------DISKAKELLGWEPKVKLRD 324
TV+++ G++ + DP +P + +KA+ +LGW+P+ L +
Sbjct: 262 TTVRDMCQIAFEHVGLDYRDFLKI--DPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDE 319
Query: 325 GLPLM-EEDFR 334
+ +M E D R
Sbjct: 320 LIRMMVEADLR 330
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 17 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60
F N + + G +G G L+ +++E +
Sbjct: 6 ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 49
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 11/130 (8%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M I++TG G +G+H+ ++ + N + + D+ + + + + +
Sbjct: 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMV 60
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 148
+D + + P F + N++ AK+ G I+
Sbjct: 61 EAFKGMDTVVFIPSIIHPSF----------KRIPEVENLVYAAKQSGVAHIIFIGYYADQ 110
Query: 149 GDPLIHPQPE 158
+ H P
Sbjct: 111 HNNPFHMSPY 120
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 343 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.98 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.93 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.93 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.92 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.91 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.91 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.9 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.9 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.9 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.9 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.9 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.9 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.9 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.89 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.89 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.89 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.89 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.89 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.89 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.89 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.89 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.89 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.89 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.89 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.88 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.88 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.88 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.88 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.88 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.88 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.88 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.88 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.88 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.88 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.88 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.88 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.88 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.88 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.88 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.88 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.88 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.88 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.88 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.88 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.88 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.88 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.88 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.87 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.87 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.87 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.87 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.87 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.87 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.87 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.87 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.87 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.87 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.87 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.87 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.87 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.87 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.87 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.87 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.87 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.87 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.87 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.87 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.87 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.87 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.87 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.87 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.87 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.87 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.87 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.87 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.87 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.87 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.87 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.87 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.86 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.86 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.86 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.86 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.86 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.86 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.86 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.86 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.86 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.86 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.86 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.86 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.86 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.86 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.86 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.86 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.86 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.86 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.86 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.86 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.86 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.86 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.86 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.86 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.86 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.86 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.86 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.86 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.86 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.86 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.85 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.85 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.85 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.85 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.85 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.85 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.85 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.85 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.85 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.85 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.85 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.85 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.85 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.85 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.85 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.85 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.85 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.85 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.85 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.85 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.85 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.84 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.84 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.84 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.84 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.84 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.84 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.84 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.84 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.84 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.84 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.84 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.84 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.84 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.84 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.84 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.84 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.84 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.84 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.84 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.84 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.84 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.84 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.84 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.84 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.83 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.83 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.83 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.83 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.83 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.83 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.83 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.83 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.83 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.83 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.83 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.83 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.83 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.82 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.82 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.81 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.81 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.81 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.81 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.81 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.8 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.8 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.8 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.79 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.79 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.78 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.78 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.78 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.78 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.78 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.77 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.76 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.75 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.75 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.74 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.74 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.74 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.74 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.74 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.73 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.73 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.73 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.72 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.72 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.72 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.71 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.65 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.63 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.63 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.59 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.58 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.54 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.42 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.38 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.35 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.31 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.29 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.28 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.27 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.23 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.22 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.07 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.9 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.83 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.8 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.76 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.76 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.43 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.37 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.37 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.33 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.32 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.3 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.3 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.29 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.28 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 98.23 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.19 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 98.18 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.17 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.17 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.15 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.15 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 98.13 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.04 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 98.02 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.01 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.01 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 98.0 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.98 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.96 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.95 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.93 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.87 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.87 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.86 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.83 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.82 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.82 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.79 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 97.77 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.76 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.74 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.74 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.74 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.72 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.72 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.71 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.7 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.66 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.61 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.59 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 97.58 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.56 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.56 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.51 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.46 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.46 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.46 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.42 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.42 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.4 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.32 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.31 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.28 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.27 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.27 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.26 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.26 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.26 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.25 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.19 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.08 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.05 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.04 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.03 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.01 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.01 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.98 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.98 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.94 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.89 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.89 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.87 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.82 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.82 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.82 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.81 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.8 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.79 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.79 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.69 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.63 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.62 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.61 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.61 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.61 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.6 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.58 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.57 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.56 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.54 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.53 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.52 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.52 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.52 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.52 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.48 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.46 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.46 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.44 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.44 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.42 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.41 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.41 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.41 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.38 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.37 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.35 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.34 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.32 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.29 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.27 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.25 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.24 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.2 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.2 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.18 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.17 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.17 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.16 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.16 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.16 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.15 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.14 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.14 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.13 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.11 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.1 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.03 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.03 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.01 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.99 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.97 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.97 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 95.93 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.91 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.9 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.89 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.89 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.88 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.86 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 95.86 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.76 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.75 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.73 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.73 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.71 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.71 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.7 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.66 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.65 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.65 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.64 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.62 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.53 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.51 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.51 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.48 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.47 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.47 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.46 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 95.44 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 95.44 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 95.44 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.42 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.41 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.38 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.38 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.37 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.37 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.36 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.35 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.34 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.34 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=354.02 Aligned_cols=312 Identities=64% Similarity=1.092 Sum_probs=267.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
+.+|+|||||||||||++|+++|+++| ++|++++|........+.......+++++.+|+.+..+.++|+|||+|+...
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~ 103 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPAS 103 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCS
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccC
Confidence 367899999999999999999999999 9999999865433333333333467999999999999899999999999765
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD 186 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~ 186 (343)
......++...++.|+.++.+++++|++.++||||+||.++|+.....+.+|+.+....+..+.+.|+.+|..+|.+++.
T Consensus 104 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 183 (343)
T 2b69_A 104 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYA 183 (343)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 44455677888999999999999999999889999999999998777788888665555667778899999999999999
Q ss_pred HHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEec
Q 019309 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIG 266 (343)
Q Consensus 187 ~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~ 266 (343)
+..+.+++++++||+++|||+.......++..++..+..++.+.+++++...++++|++|+|++++.+++.+.+++||++
T Consensus 184 ~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~i~ 263 (343)
T 2b69_A 184 YMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLG 263 (343)
T ss_dssp HHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEES
T ss_pred HHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCCCCeEEec
Confidence 98888999999999999999865444567788888888999888888888899999999999999999987778899999
Q ss_pred CCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhCC
Q 019309 267 NPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 267 ~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
+++.+|+.|+++.+.+.+|.+.++...+..........+|.+|++++|||+|+++++|+|+++++||+++...
T Consensus 264 ~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 336 (343)
T 2b69_A 264 NPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEY 336 (343)
T ss_dssp CCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777666544455566789999999999999889999999999999877543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=354.91 Aligned_cols=310 Identities=30% Similarity=0.409 Sum_probs=264.4
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC------CceEEEEcccCCcc-----
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH------PRFELIRHDVTEPL----- 91 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~----- 91 (343)
..+.+++|+|||||||||||++|++.|+++| ++|++++|............... .+++++.+|+.|+.
T Consensus 19 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (351)
T 3ruf_A 19 QQLIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV 97 (351)
T ss_dssp HHHHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH
T ss_pred hhCCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH
Confidence 4566788999999999999999999999999 99999999655443333322211 58999999999873
Q ss_pred cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
+.++|+|||+|+.........++...++.|+.++.+++++|++.++ ||||+||.++|+.....+++|+ .+..|.
T Consensus 98 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~ 172 (351)
T 3ruf_A 98 MKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPL 172 (351)
T ss_dssp TTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCC
T ss_pred hcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCC
Confidence 4589999999997665566678888999999999999999999998 9999999999998888888898 677888
Q ss_pred CchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 171 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
+.|+.+|..+|++++.+..++|++++++||++||||+..... ..++..++..+..++.+.+++++...+++||++|+|
T Consensus 173 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva 252 (351)
T 3ruf_A 173 SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHH
Confidence 999999999999999999888999999999999999865432 257888999999999999988899999999999999
Q ss_pred HHHHHHHhcC---CCcceEecCCCccCHHHHHHHHHHHhCCC-----cceEEccCCCCCCCccccChHHHHHhcCCcccc
Q 019309 249 DGLIRLMEGE---NTGPVNIGNPGEFTMLELAETVKELINPG-----IEIKMVENTPDDPRQRKPDISKAKELLGWEPKV 320 (343)
Q Consensus 249 ~~i~~~~~~~---~~~~~~~~~~~~~s~~e~~~~i~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~ 320 (343)
++++.+++.. .+++||+++++.+|+.|+++.+.+.+|.. ......+..........+|.+|++++|||+|++
T Consensus 253 ~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 332 (351)
T 3ruf_A 253 QMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNI 332 (351)
T ss_dssp HHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCCC
Confidence 9999999873 26799999999999999999999999873 333334444445566789999999999999999
Q ss_pred cHHhHHHHHHHHHHHhhC
Q 019309 321 KLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 321 ~~~e~l~~~~~~~~~~~~ 338 (343)
+++++|+++++||+++.+
T Consensus 333 ~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 333 KIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999988754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=344.96 Aligned_cols=304 Identities=27% Similarity=0.418 Sum_probs=250.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCC-CCCccchhhhcCCCceEEEEcccCCccc-----C--CCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYF-TGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~ 97 (343)
+++|+|||||||||||++|+++|+++|. ++|++++|.. ......+.......+++++.+|+.|+.. . ++|+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 101 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV 101 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence 4678999999999999999999999982 4666666643 2222333333344689999999998742 2 4999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHH
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
|||+|+.........++...++.|+.++.+++++|++.++ ||||+||.++|+.. ...+++|+ ++..|.+.|+.
T Consensus 102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y~~ 176 (346)
T 4egb_A 102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPYSS 176 (346)
T ss_dssp EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHHHH
T ss_pred EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChhHH
Confidence 9999997765556677788999999999999999999999 89999999999986 45678888 67788899999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+|..+|++++.++.+++++++++||+++|||+... ..++..++..+..++.+.+++++...+++||++|+|++++.++
T Consensus 177 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 254 (346)
T 4egb_A 177 SKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYP--EKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVL 254 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCc--cchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHH
Confidence 99999999999998889999999999999998543 3678889999999999999888999999999999999999999
Q ss_pred hcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 256 EGEN-TGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 256 ~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
+.+. +++||+++++.+|+.|+++.+.+.+|.+.. +...+..........+|.+|++++|||+|+++++|+|+++++||
T Consensus 255 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~ 334 (346)
T 4egb_A 255 HKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWY 334 (346)
T ss_dssp HHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9876 569999999999999999999999998765 55555544555667789999999999999999999999999999
Q ss_pred HHhh
Q 019309 334 RSRL 337 (343)
Q Consensus 334 ~~~~ 337 (343)
+++.
T Consensus 335 ~~~~ 338 (346)
T 4egb_A 335 EKNE 338 (346)
T ss_dssp HHCH
T ss_pred Hhhh
Confidence 8764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-48 Score=340.18 Aligned_cols=290 Identities=26% Similarity=0.347 Sum_probs=252.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
|+|+|||||||||||++|++.|+++| ++|++++|. ..... + .+++++.+|+. . .+.++|+|||+|
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~-~~~~~-----~--~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRS-IGNKA-----I--NDYEYRVSDYT-LEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC-CC------------CCEEEECCCC-HHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCC-CCccc-----C--CceEEEEcccc-HHHHHHhhcCCCEEEEcc
Confidence 46899999999999999999999999 999999996 22111 1 27899999998 5 345899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
+..... ++...++.|+.++.+++++|++.++ ||||+||.++|+.....+++|+ ++..|.+.|+.+|..+|
T Consensus 71 ~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E 141 (311)
T 3m2p_A 71 ATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMYGVSKLACE 141 (311)
T ss_dssp CCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHHHHHHHHHH
T ss_pred ccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchhHHHHHHHH
Confidence 876532 6667789999999999999999999 7999999999998887888888 67788899999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-C
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-T 260 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~ 260 (343)
++++.+..+.+++++++||+++|||+.... .++..++..+..++.+.++++++..++++|++|+|++++.+++++. +
T Consensus 142 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 219 (311)
T 3m2p_A 142 HIGNIYSRKKGLCIKNLRFAHLYGFNEKNN--YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVS 219 (311)
T ss_dssp HHHHHHHHHSCCEEEEEEECEEECSCC--C--CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHcCCCEEEEeeCceeCcCCCCC--CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCCC
Confidence 999999988899999999999999985432 6788899999999999988888899999999999999999999884 7
Q ss_pred cceEecCCCccCHHHHHHHHHHHhCCCcceEEccC-CCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 261 GPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN-TPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
++||+++++.+|+.|+++.+.+.+|.+..+...+. .........+|.+|++++|||+|+++++|+|+++++||++...
T Consensus 220 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 298 (311)
T 3m2p_A 220 GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDD 298 (311)
T ss_dssp EEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC---
T ss_pred CeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999888887766 5556667789999999999999999999999999999976644
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=341.71 Aligned_cols=296 Identities=29% Similarity=0.456 Sum_probs=258.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC---CCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT---GSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
++|+|||||||||||++|+++|+++| ++|++++|... .....+.......+++++.+|+. ++|+|||+|+.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~ 79 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH 79 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCcc
Confidence 57899999999999999999999999 99999999654 23333333334456777778776 78999999997
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
........++...++ |+.++.+++++|++.++ ||||+||.++|+.....+++|+ ++..|.+.|+.+|..+|.+
T Consensus 80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 153 (321)
T 3vps_A 80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMV 153 (321)
T ss_dssp CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHH
T ss_pred CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHH
Confidence 765555666667777 99999999999999998 9999999999998888888888 6777889999999999999
Q ss_pred HHHHHHHhCC-ceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcc
Q 019309 184 MFDYHRQHGI-QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262 (343)
Q Consensus 184 ~~~~~~~~~~-~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~ 262 (343)
++.+..++++ +++++||+++|||+... ..++..++..+..++.+.+++++...+++||++|+|++++.+++.+..|+
T Consensus 154 ~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~g~ 231 (321)
T 3vps_A 154 AGAHQRASVAPEVGIVRFFNVYGPGERP--DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSV 231 (321)
T ss_dssp HHHHHHSSSSCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCCSE
T ss_pred HHHHHHHcCCCceEEEEeccccCcCCCC--CChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCCCe
Confidence 9999988899 99999999999998543 45788889999999988988888899999999999999999999887669
Q ss_pred eEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcc-cccHHhHHHHHHHHHHHhhC
Q 019309 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEP-KVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 263 ~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p-~~~~~e~l~~~~~~~~~~~~ 338 (343)
||+++++.+|+.|+++.+. .+|.+.++...+..........+|.+|++++|||+| .++++|+|+++++||+++..
T Consensus 232 ~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 232 VNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp EEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCT
T ss_pred EEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 999998888777776777778899999999999999 77999999999999987753
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=331.48 Aligned_cols=294 Identities=33% Similarity=0.539 Sum_probs=247.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC---CCCEEEEecCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~d~vi~~a~~~~ 106 (343)
|+|||||||||||++|+++|+++| ++|++++|......... ..+++++.+|+.|..+. ..|+|||+|+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~ 74 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKGDVVFHFAANPE 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCCSEEEECCSSCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCCCEEEECCCCCC
Confidence 789999999999999999999999 99999998644332221 35789999999987522 2399999999766
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
......++...++.|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..|.+.|+.+|..+|.+++
T Consensus 75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK~~~e~~~~ 149 (312)
T 3ko8_A 75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCA 149 (312)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHH
Confidence 5667778889999999999999999999998 9999999999998888888888 677788999999999999999
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcC-CCeEEecCCceeEeeeehHHHHHHHHHHHhc---C-C-
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG---E-N- 259 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~---~-~- 259 (343)
.++.+++++++++||+++|||+.. ..++..++..+..+ ..+.+.+++.+.++++|++|+|++++.++++ . .
T Consensus 150 ~~~~~~g~~~~~lrp~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 226 (312)
T 3ko8_A 150 TYARLFGVRCLAVRYANVVGPRLR---HGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 226 (312)
T ss_dssp HHHHHHCCEEEEEEECEEECTTCC---SSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhCCCEEEEeeccccCcCCC---CChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCC
Confidence 999988999999999999999743 35677778777777 4566778888999999999999999999987 2 3
Q ss_pred CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC------CCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT------PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 260 ~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
+++||+++++.+|+.|+++.+.+.+|.+..+...+.. +.......+|.+|++++|||+|+++++|+|+++++||
T Consensus 227 ~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~ 306 (312)
T 3ko8_A 227 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDL 306 (312)
T ss_dssp EEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHH
T ss_pred CcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999999988777765432 2334456789999999999999999999999999999
Q ss_pred HHhh
Q 019309 334 RSRL 337 (343)
Q Consensus 334 ~~~~ 337 (343)
+++.
T Consensus 307 ~~~~ 310 (312)
T 3ko8_A 307 AKEL 310 (312)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8763
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=335.55 Aligned_cols=307 Identities=22% Similarity=0.338 Sum_probs=255.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-------CCCC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL-------IEVD 96 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~-------~~~d 96 (343)
|+++|+||||||+||||++|+++|+++| ++|++++|............. ...++.++.+|+.|+.. .++|
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 3467899999999999999999999999 999999986544333222211 12478999999998732 2799
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
+|||+||.........++...++.|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y~~ 155 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPYGQ 155 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHHHH
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChhHH
Confidence 99999997765556677788999999999999999999998 9999999999998888888888 57778889999
Q ss_pred hHHHHHHHHHHHHHHhC-CceEEEEeccccCCCCC------CC--CccHHHHHHHHHHcC-CCeEEec------CCceeE
Q 019309 176 GKRVAETLMFDYHRQHG-IQIRIARIFNTYGPRMN------ID--DGRVVSNFIAQALRG-EPLTVQK------PGTQTR 239 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~-~~~~i~R~~~v~G~~~~------~~--~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~ 239 (343)
+|..+|.+++.++.+.+ ++++++||+++|||... .. ...++..+....... ..+.+++ ++.+.+
T Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 235 (341)
T 3enk_A 156 TKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVR 235 (341)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEE
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeE
Confidence 99999999999988876 99999999999999642 11 133444444433332 4566666 778899
Q ss_pred eeeehHHHHHHHHHHHhc----CCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcC
Q 019309 240 SFCYVSDMVDGLIRLMEG----ENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLG 315 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~----~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 315 (343)
++||++|+|++++.+++. ..+++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|.+|++++||
T Consensus 236 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 315 (341)
T 3enk_A 236 DYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIG 315 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHC
T ss_pred eeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcC
Confidence 999999999999999986 3478999999999999999999999999988888777766667778899999999999
Q ss_pred CcccccHHhHHHHHHHHHHHhhC
Q 019309 316 WEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 316 ~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
|+|+++++|+|+++++||+++.+
T Consensus 316 ~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 316 WKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999988754
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=333.77 Aligned_cols=308 Identities=26% Similarity=0.353 Sum_probs=254.4
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cC---CCceEEEEcccCCcc-----c
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IG---HPRFELIRHDVTEPL-----L 92 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~---~~~~~~~~~d~~~~~-----~ 92 (343)
.+.+++|+|||||||||||++|++.|+++| ++|++++|......+.+... +. ..+++++.+|+.|.. +
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 100 (352)
T 1sb8_A 22 ELPAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC 100 (352)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH
T ss_pred hcCccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh
Confidence 344577899999999999999999999999 99999998643322222211 10 147899999999863 4
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
.++|+|||+||.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+.+|+ ++..|.+
T Consensus 101 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-----~~~~~~~ 175 (352)
T 1sb8_A 101 AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLS 175 (352)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCS
T ss_pred cCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCC-----CCCCCCC
Confidence 489999999987654344567888999999999999999999998 8999999999998777778888 5667788
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.|+.+|..+|.+++.++.+.+++++++||++||||+.... ...++..++..+..+..+.+++++...++++|++|+|+
T Consensus 176 ~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (352)
T 1sb8_A 176 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 255 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHH
Confidence 9999999999999999888899999999999999986432 12567778888888888888888888999999999999
Q ss_pred HHHHHHhcC---CCcceEecCCCccCHHHHHHHHHHHh---CCCcc--eEEccCCCCCCCccccChHHHHHhcCCccccc
Q 019309 250 GLIRLMEGE---NTGPVNIGNPGEFTMLELAETVKELI---NPGIE--IKMVENTPDDPRQRKPDISKAKELLGWEPKVK 321 (343)
Q Consensus 250 ~i~~~~~~~---~~~~~~~~~~~~~s~~e~~~~i~~~~---g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~ 321 (343)
+++.+++.. .+++||+++++.+|+.|+++.+.+.+ |.+.. ..+.+..+.......+|.+|++++|||+|+++
T Consensus 256 a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 335 (352)
T 1sb8_A 256 ANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYD 335 (352)
T ss_dssp HHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCC
T ss_pred HHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCCCCCC
Confidence 999998862 26799999999999999999999999 87655 22333333344556789999999999999889
Q ss_pred HHhHHHHHHHHHHHhh
Q 019309 322 LRDGLPLMEEDFRSRL 337 (343)
Q Consensus 322 ~~e~l~~~~~~~~~~~ 337 (343)
++|+|+++++||+++.
T Consensus 336 ~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 336 VSAGVALAMPWYIMFL 351 (352)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=338.18 Aligned_cols=300 Identities=23% Similarity=0.354 Sum_probs=250.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh--cCCCeEEEEecCCCCCc---------cchhhhcCCCceEEEEcccCCcc----
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME--NEKNEVIVADNYFTGSK---------DNLKKWIGHPRFELIRHDVTEPL---- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~--~g~~~V~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~---- 91 (343)
+++|+||||||+||||++|++.|++ .| ++|++++|...... ... ......++.++.+|+.++.
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHF-KNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCG-GGGTTCCSEEEECCTTCHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhh-hhccccCceEEECCCCCHHHHHH
Confidence 4678999999999999999999999 89 99999998643100 111 1122346799999999862
Q ss_pred --cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
..++|+||||||... ....++...++.|+.++.+++++|++.+++|||+||.++||.... +.+|+ ++..|
T Consensus 86 ~~~~~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred hhccCCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence 468999999999553 356788899999999999999999999999999999999998766 88888 57788
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
.++|+.+|..+|.+++.+..+ ++++++||+++|||+..... ..++..++..+..+..+.+++++.+.++++|++|+
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 235 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDV 235 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHH
Confidence 899999999999999988655 89999999999999865432 26788889999999888887888889999999999
Q ss_pred HHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC-CCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 248 VDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT-PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 248 a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
|++++.+++.+..|+||+++++.+|+.|+++.+.+.+| +.++...+.. ........+|.+|+++.|||+|+++++|+|
T Consensus 236 a~ai~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 314 (362)
T 3sxp_A 236 IQANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLESGI 314 (362)
T ss_dssp HHHHHHHTTCSSCEEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCCCCCHHHHH
Confidence 99999999988777999999999999999999999999 7777666654 445566788999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 019309 327 PLMEEDFRSRLGV 339 (343)
Q Consensus 327 ~~~~~~~~~~~~~ 339 (343)
+++++||++..+.
T Consensus 315 ~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 315 KDYLPHIHAIFKG 327 (362)
T ss_dssp HHHHHHHTCC---
T ss_pred HHHHHHHHHHhhc
Confidence 9999999877554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=331.27 Aligned_cols=297 Identities=23% Similarity=0.277 Sum_probs=246.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----C--CCCEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQI 98 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~v 98 (343)
++++|+|||||||||||++|+++|+++| + +. . . ....++++.+|+.|+.. . ++|+|
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~------~~--~-~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~d~V 65 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGA-G------LP--G-E-------DWVFVSSKDADLTDTAQTRALFEKVQPTHV 65 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTT-C------CT--T-C-------EEEECCTTTCCTTSHHHHHHHHHHSCCSEE
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcC-C------cc--c-c-------cccccCceecccCCHHHHHHHHhhcCCCEE
Confidence 3578999999999999999999999999 5 10 0 0 01234445688887632 2 49999
Q ss_pred EEecCCCCc-cccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC-chHH
Q 019309 99 YHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS-CYDE 175 (343)
Q Consensus 99 i~~a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~ 175 (343)
||+|+.... .....++...++.|+.++.+++++|++.++ ||||+||.++|+.....+++|+.+.. .+..|.. +|+.
T Consensus 66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~ 144 (319)
T 4b8w_A 66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHN-GPPHNSNFGYSY 144 (319)
T ss_dssp EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGB-SCCCSSSHHHHH
T ss_pred EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCcccccccc-CCCCCCcchHHH
Confidence 999997542 235567888999999999999999999999 89999999999988888888885322 1444444 6999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHH----HHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQ----ALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
+|..+|++++.+.++.+++++++||+++|||+..+. ...++..++.. +..++.+.+++++...+++||++|+|+
T Consensus 145 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 224 (319)
T 4b8w_A 145 AKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQ 224 (319)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHH
Confidence 999999999999988899999999999999986542 23466666666 788999999899999999999999999
Q ss_pred HHHHHHhcCC---CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 250 GLIRLMEGEN---TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 250 ~i~~~~~~~~---~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
+++.+++++. +++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|.+|++++|||.|.++++|+|
T Consensus 225 a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l 304 (319)
T 4b8w_A 225 LFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAV 304 (319)
T ss_dssp HHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCCCCHHHHH
T ss_pred HHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCCCCHHHHH
Confidence 9999998743 4589999999999999999999999998888877766566666789999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 019309 327 PLMEEDFRSRLGVP 340 (343)
Q Consensus 327 ~~~~~~~~~~~~~~ 340 (343)
+++++||+++....
T Consensus 305 ~~~~~~~~~~~~~~ 318 (319)
T 4b8w_A 305 KETCAWFTDNYEQA 318 (319)
T ss_dssp HHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876654
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=326.63 Aligned_cols=295 Identities=30% Similarity=0.472 Sum_probs=243.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----cCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~d~vi~~a~~~ 105 (343)
|+||||||+||||++|+++|+++| +.|.+..|.. ..... . ...++++.+|+.+.. +.++|+|||+|+..
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~-~~~~~----~-~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSS-GNEEF----V-NEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSS-CCGGG----S-CTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCC-CChhh----c-CCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 689999999999999999999999 6666554432 21111 1 357899999998842 24799999999866
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHH
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLM 184 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~ 184 (343)
.......++...++.|+.++.+++++|++.++ +|||+||.++||.....+.+|+ .+..|.+.|+.+|..+|.++
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~~~ 149 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASKLACEALI 149 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 55556678889999999999999999999998 9999999999998888888888 57778889999999999999
Q ss_pred HHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcC-CCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-Ccc
Q 019309 185 FDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGP 262 (343)
Q Consensus 185 ~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~ 262 (343)
+.++.++|++++++||++||||+.. ..++..++..+..+ ..+.+++++.+.+++||++|+|++++.+++... +++
T Consensus 150 ~~~~~~~g~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 226 (313)
T 3ehe_A 150 ESYCHTFDMQAWIYRFANVIGRRST---HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226 (313)
T ss_dssp HHHHHHTTCEEEEEECSCEESTTCC---CSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHhcCCCEEEEeeccccCcCCC---cChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCCCCce
Confidence 9999999999999999999999753 35777788877777 456678888899999999999999999999544 679
Q ss_pred eEecCCCccCHHHHHHHHHHHhCCCcceEEccCC---CCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhCC
Q 019309 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVENT---PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 263 ~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
||+++++.+|+.|+++.+.+.+|.+..+...+.. ........+|.+|++ +|||+|+++++|+|+++++||+++.+.
T Consensus 227 ~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~~~e~l~~~~~~~~~~~~~ 305 (313)
T 3ehe_A 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKPRYNSEEAVRMAVRDLVEDLDE 305 (313)
T ss_dssp EECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCCSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999988777665432 223344678999995 599999999999999999999988654
Q ss_pred C
Q 019309 340 P 340 (343)
Q Consensus 340 ~ 340 (343)
.
T Consensus 306 ~ 306 (313)
T 3ehe_A 306 E 306 (313)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=335.83 Aligned_cols=293 Identities=23% Similarity=0.294 Sum_probs=248.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~ 101 (343)
..+|+|||||||||||++|++.|+++| ++|++++|.... .+++++.+|+.|.. +.++|+|||+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 84 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHL 84 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence 367899999999999999999999999 999999985422 46888999999863 4589999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCC--CCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD--PLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~--~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
|+..... .......++.|+.++.+++++|++.++ ||||+||.++|+. ....++.|+ .+..+.+.|+.+|.
T Consensus 85 A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y~~sK~ 157 (347)
T 4id9_A 85 GAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPYGLTKL 157 (347)
T ss_dssp CCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChHHHHHH
Confidence 9866432 233478899999999999999999999 9999999999998 566678888 57778899999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecccc-------------CCCCCCC---------CccHHHHHHHHHHcCCCeEEecCCc
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTY-------------GPRMNID---------DGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~-------------G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+|++++.+..+++++++++||+++| ||+.... ...++..++.....++.+.+++++.
T Consensus 158 ~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 237 (347)
T 4id9_A 158 LGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNE 237 (347)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECT
T ss_pred HHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCC
Confidence 99999999998889999999999999 7753321 1356777888888898888888888
Q ss_pred eeEee----eehHHHHHHHHHHHhcCC--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHH
Q 019309 237 QTRSF----CYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKA 310 (343)
Q Consensus 237 ~~~~~----v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
..+++ +|++|+|++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+..+...+..+. ...+|.+|+
T Consensus 238 ~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~---~~~~d~~k~ 314 (347)
T 4id9_A 238 NGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGDGV---YYHTSNERI 314 (347)
T ss_dssp TCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSCCC---BCCBCCHHH
T ss_pred cccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCccc---ccccCHHHH
Confidence 88899 999999999999999874 779999999999999999999999998877765554332 667899999
Q ss_pred HHhcCCcccccHHhHHHHHHHHHHHhhCCCC
Q 019309 311 KELLGWEPKVKLRDGLPLMEEDFRSRLGVPK 341 (343)
Q Consensus 311 ~~~lg~~p~~~~~e~l~~~~~~~~~~~~~~~ 341 (343)
+++|||+|+++++|+|+++++||+++.....
T Consensus 315 ~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~~ 345 (347)
T 4id9_A 315 RNTLGFEAEWTMDRMLEEAATARRQRLAKEQ 345 (347)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999876554
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=326.20 Aligned_cols=303 Identities=28% Similarity=0.414 Sum_probs=247.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEecCCC-CCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVADNYFT-GSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
|++|+||||||+||||++|+++|+++| .++|++++|... ...+.+.......+++++.+|+.|.. +.++|+||
T Consensus 1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 80 (336)
T 2hun_A 1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVV 80 (336)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEE
Confidence 356899999999999999999999996 389999998542 12222322222357899999999863 34799999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
|+||.........++...++.|+.++.+++++|.+.+. ||||+||.++||.....+++|+ ++..+.+.|+.+|
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (336)
T 2hun_A 81 HLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATK 155 (336)
T ss_dssp ECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHHHHHH
T ss_pred ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCccHHHH
Confidence 99987654344567788999999999999999998874 9999999999998766678887 5667778999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
..+|.+++.+..+++++++++||++||||.... ..++..++..+..++.+.+++++.+.++++|++|+|++++.+++.
T Consensus 156 ~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 233 (336)
T 2hun_A 156 AASDMLVLGWTRTYNLNASITRCTNNYGPYQFP--EKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLK 233 (336)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT--TSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc--CchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhC
Confidence 999999999998889999999999999998532 346777888888888888888888889999999999999999987
Q ss_pred CC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHH
Q 019309 258 EN-TGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335 (343)
Q Consensus 258 ~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~ 335 (343)
.. +++||+++++.+|+.|+++.+.+.+|.+.+ +...+..........+|++|++++|||+|+++++|+|+++++||++
T Consensus 234 ~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~ 313 (336)
T 2hun_A 234 GESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLK 313 (336)
T ss_dssp CCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 65 569999999999999999999999997643 4444433333334568999999999999998999999999999987
Q ss_pred h
Q 019309 336 R 336 (343)
Q Consensus 336 ~ 336 (343)
+
T Consensus 314 ~ 314 (336)
T 2hun_A 314 N 314 (336)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-47 Score=341.96 Aligned_cols=305 Identities=29% Similarity=0.479 Sum_probs=250.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC-Ccc-----cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT-EPL-----LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~-----~~~~d~vi 99 (343)
|++|+|||||||||||++|+++|+++ | ++|++++|.... ........+++++.+|+. +.. +.++|+||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~----~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDR----LGDLVKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTT----TGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhh----hhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 45689999999999999999999999 8 999999996432 222223468999999999 653 34799999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCC-CCCC-CCCCchHHhH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGN-VNPI-GVRSCYDEGK 177 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~-~~~~-~~~~~Y~~~K 177 (343)
|||+.........++...++.|+.++.+++++|++.+.||||+||.++||.....++.|+..+. ..+. .|.+.|+.+|
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK 176 (372)
T 3slg_A 97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSK 176 (372)
T ss_dssp ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHH
Confidence 9999877656667888999999999999999999988899999999999988777788874321 1111 4667899999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
..+|++++.+..+ +++++++||++||||+... ....++..++..+..++.+.++++++..+++||++|+|+++
T Consensus 177 ~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 255 (372)
T 3slg_A 177 QLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISAL 255 (372)
T ss_dssp HHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHH
Confidence 9999999999887 9999999999999998542 12457888999999999999988888999999999999999
Q ss_pred HHHHhcC----CCcceEecCC-CccCHHHHHHHHHHHhCCCcceEEccC-------C--------CCCCCccccChHHHH
Q 019309 252 IRLMEGE----NTGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVEN-------T--------PDDPRQRKPDISKAK 311 (343)
Q Consensus 252 ~~~~~~~----~~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~ 311 (343)
+.+++.+ .+++||++++ +.+|+.|+++.+.+.+|.+..+...+. . ........+|.+|++
T Consensus 256 ~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 335 (372)
T 3slg_A 256 MKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTM 335 (372)
T ss_dssp HHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCCCBCCHHHH
T ss_pred HHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccceeecCHHHHH
Confidence 9999975 3679999994 899999999999999986644322110 0 023345678999999
Q ss_pred HhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 312 ELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 312 ~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
++|||+|+++++|+|+++++||+++.
T Consensus 336 ~~lG~~p~~~l~e~l~~~~~~~~~~~ 361 (372)
T 3slg_A 336 QELGWAPQFTFDDALRQIFEAYRGHV 361 (372)
T ss_dssp HHHTCCCCCCHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997654
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=324.73 Aligned_cols=294 Identities=30% Similarity=0.463 Sum_probs=247.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~a 102 (343)
|+||||||+||||++++++|+++| ++|++++|........ +. .+++++.+|+.|+. +. ++|+|||+|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~----~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 74 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKREN----VP-KGVPFFRVDLRDKEGVERAFREFRPTHVSHQA 74 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCGGG----SC-TTCCEECCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCchhh----cc-cCeEEEECCCCCHHHHHHHHHhcCCCEEEECc
Confidence 689999999999999999999999 9999998843222111 11 36788999999863 22 799999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC-cccCC-CCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGD-PLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~-~v~~~-~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
+.........++...++.|+.++.+++++|++.++ |||++||. ++||. ....+.+|+ .+..|.+.|+.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 75 AQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPYAASKAA 149 (311)
T ss_dssp SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHHHHHHHH
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChHHHHHHH
Confidence 87654445567788999999999999999999988 99999999 89986 455567777 566677899999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEe-----cCCceeEeeeehHHHHHHHHH
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEPLTVQ-----KPGTQTRSFCYVSDMVDGLIR 253 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~v~D~a~~i~~ 253 (343)
+|.+++.+..+++++++++||+++|||+..... ..++..++..+..+..+.++ +++.+.++++|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 999999998888999999999999999864432 34677788888888888877 777888999999999999999
Q ss_pred HHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
+++.+ ++.||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|+++ |||+|+++++|+|+++++||
T Consensus 230 ~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~ 307 (311)
T 2p5y_A 230 ALFSL-EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHF 307 (311)
T ss_dssp HHHHC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHH
T ss_pred HHhCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHH
Confidence 99876 78999999999999999999999999887777666554455667889999999 99999989999999999999
Q ss_pred HHh
Q 019309 334 RSR 336 (343)
Q Consensus 334 ~~~ 336 (343)
+++
T Consensus 308 ~~~ 310 (311)
T 2p5y_A 308 RGA 310 (311)
T ss_dssp HTC
T ss_pred Hhh
Confidence 754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=335.04 Aligned_cols=306 Identities=28% Similarity=0.414 Sum_probs=243.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~ 101 (343)
+.+|+||||||+||||++|++.|+++|.++|++++|........+. ...+++++.+|+.|+ .+.++|+|||+
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~ 106 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHL 106 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEEC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEEC
Confidence 4678999999999999999999999986799999986433222221 235799999999986 34589999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccCCCCCCCCC--CCCCCCCCCC-CCCCchHHh
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPLIHPQP--ETYWGNVNPI-GVRSCYDEG 176 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~~~~~~~~~--e~~~~~~~~~-~~~~~Y~~~ 176 (343)
|+.........++...++.|+.++.+++++|++. ++ ||||+||.++|+.....+++ |+.+. .+. .|.++|+.+
T Consensus 107 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~s 184 (377)
T 2q1s_A 107 ATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSMS 184 (377)
T ss_dssp CCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHHH
T ss_pred CCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHHH
Confidence 9876544445678889999999999999999998 88 99999999999987666677 77321 144 667889999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCC---------CCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRM---------NIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
|..+|.+++.++.+.+++++++||++||||.. .... ..++..++..+..+..+.++++++..+++||++
T Consensus 185 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 264 (377)
T 2q1s_A 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVE 264 (377)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHH
Confidence 99999999999888899999999999999975 2110 356788888888888887777788899999999
Q ss_pred HHHHH-HHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCC-ccccChHHHHHhcCCcccccHH
Q 019309 246 DMVDG-LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPR-QRKPDISKAKELLGWEPKVKLR 323 (343)
Q Consensus 246 D~a~~-i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~p~~~~~ 323 (343)
|+|++ ++.+++.+..|+||+++++.+|+.|+++.+.+.+|.+..+...+..+.... ...+|++|++++|||+|+++++
T Consensus 265 Dva~a~i~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~ 344 (377)
T 2q1s_A 265 DVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSID 344 (377)
T ss_dssp HHHHHHHHHHHHCCTTEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHHHHHCCCCCCCHH
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHHHHcCCCCCCCHH
Confidence 99999 999998766569999999999999999999999998766555443333334 5678999999999999998999
Q ss_pred hHHHHHHHHHHHhh
Q 019309 324 DGLPLMEEDFRSRL 337 (343)
Q Consensus 324 e~l~~~~~~~~~~~ 337 (343)
|+|+++++||+++.
T Consensus 345 e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 345 DGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=325.71 Aligned_cols=299 Identities=27% Similarity=0.378 Sum_probs=247.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCC-ccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGS-KDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
+|+||||||+||||++|+++|+++ | ++|++++|..... ...+.. +...+++++.+|+.|+. +.++|+|||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIADAELVDKLAAKADAIVH 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGG-GCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCChhHHhh-hccCCeEEEECCCCCHHHHHHHhhcCCEEEE
Confidence 379999999999999999999999 7 9999999864221 222222 22357899999999863 457899999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCC------------CCCCCCCCCCCCCCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLI------------HPQPETYWGNVNPIG 168 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~------------~~~~e~~~~~~~~~~ 168 (343)
+||.........++...++.|+.++.+++++|.+.++||||+||.++||.... .+++|+ ++..
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~ 156 (348)
T 1oc2_A 82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYN 156 (348)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCC
T ss_pred CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCC
Confidence 99876543445677889999999999999999998889999999999986532 456676 5667
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
+.+.|+.+|..+|.+++.+..+++++++++||+.+|||+... ..++..++..+..+..+.+++++...++++|++|+|
T Consensus 157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 234 (348)
T 1oc2_A 157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI--EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHS 234 (348)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT--TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc--cchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHH
Confidence 778999999999999999988889999999999999998532 356777888888888888888888899999999999
Q ss_pred HHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccCCCCCCCccccChHHHHHhcCCccccc-HHhH
Q 019309 249 DGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWEPKVK-LRDG 325 (343)
Q Consensus 249 ~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~-~~e~ 325 (343)
++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+.. +.+.+..+.......+|++|++++|||+|+++ ++|+
T Consensus 235 ~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~ 314 (348)
T 1oc2_A 235 TGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEG 314 (348)
T ss_dssp HHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHH
T ss_pred HHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCCcHHHH
Confidence 99999998765 569999999999999999999999997643 44433333333445689999999999999988 9999
Q ss_pred HHHHHHHHHHh
Q 019309 326 LPLMEEDFRSR 336 (343)
Q Consensus 326 l~~~~~~~~~~ 336 (343)
|+++++||+++
T Consensus 315 l~~~~~~~~~~ 325 (348)
T 1oc2_A 315 LEETIQWYTDN 325 (348)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=322.09 Aligned_cols=293 Identities=27% Similarity=0.344 Sum_probs=244.4
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----C--CCCEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQI 98 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~v 98 (343)
.++.|+||||||+||||++|+++|+++| ++|++++|.... . . + +++++.+|+.|+.. . ++|+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~-~----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA-K-L----P---NVEMISLDIMDSQRVKKVISDIKPDYI 78 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC-C-C----T---TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc-c-c----c---eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999999 999999986433 1 1 1 68899999998632 2 38999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccCCC--CCCCCCCCCCCCCCCCCCCCchH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP--LIHPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~~~--~~~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
||+||.........++...++.|+.++.+++++|++. ++ ||||+||.++|+.. ...+++|+ ++..+.+.|+
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y~ 153 (321)
T 2pk3_A 79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYG 153 (321)
T ss_dssp EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHHH
T ss_pred EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCccH
Confidence 9999976544455678889999999999999999876 46 99999999999876 66778888 5677788999
Q ss_pred HhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc---C--CCeEEecCCceeEeeeehHHHHH
Q 019309 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR---G--EPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.+|..+|.+++.++.++|++++++||+++|||+... ..++..++..+.. + ..+.+++++...++++|++|+|+
T Consensus 154 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~ 231 (321)
T 2pk3_A 154 VSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCC--CchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHH
Confidence 999999999999988889999999999999998543 2456666666666 6 56777778888999999999999
Q ss_pred HHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEcc--CCCCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 250 GLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVE--NTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
+++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+..+...+ ..........+|++|++++|||+|+++++|+|
T Consensus 232 a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l 311 (321)
T 2pk3_A 232 AYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSL 311 (321)
T ss_dssp HHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHHHH
T ss_pred HHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHHHH
Confidence 9999998765 67999999999999999999999999877666555 22333455778999999999999999999999
Q ss_pred HHHHHHHHH
Q 019309 327 PLMEEDFRS 335 (343)
Q Consensus 327 ~~~~~~~~~ 335 (343)
+++++||++
T Consensus 312 ~~~~~~~~~ 320 (321)
T 2pk3_A 312 FEILQSYRQ 320 (321)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999975
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=324.15 Aligned_cols=301 Identities=25% Similarity=0.380 Sum_probs=247.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~a 102 (343)
|+||||||+||||++|+++|+++| ++|++++|......+ .+. .+++++.+|+.+.. +. ++|+|||+|
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a 75 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHED----AIT-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA 75 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG----GSC-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCchh----hcC-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 789999999999999999999999 999999985433221 122 27889999999863 23 799999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
+.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+++|+ ++..|.+.|+.+|..+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 150 (330)
T 2c20_A 76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTYGETKLAIE 150 (330)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHHHHHHHHHH
T ss_pred cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChHHHHHHHHH
Confidence 87654334567788999999999999999999998 8999999999998777788888 56677889999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCC-------CCccHHHHHHHHHHc-CCCeEEec------CCceeEeeeehHHH
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNI-------DDGRVVSNFIAQALR-GEPLTVQK------PGTQTRSFCYVSDM 247 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~v~v~D~ 247 (343)
.+++.+..+++++++++||+++|||+... ....++..++..... +..+.+++ +++..+++||++|+
T Consensus 151 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dv 230 (330)
T 2c20_A 151 KMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230 (330)
T ss_dssp HHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHH
T ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHH
Confidence 99999988889999999999999996321 013455555554443 34566665 56788999999999
Q ss_pred HHHHHHHHhcC----CCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccc-cH
Q 019309 248 VDGLIRLMEGE----NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKV-KL 322 (343)
Q Consensus 248 a~~i~~~~~~~----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~-~~ 322 (343)
|++++.+++.+ .+++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|.+|++++|||+|++ ++
T Consensus 231 a~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l 310 (330)
T 2c20_A 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNV 310 (330)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCccCCH
Confidence 99999999853 25799999999999999999999999988777666654445556788999999999999998 99
Q ss_pred HhHHHHHHHHHHHhhCCCC
Q 019309 323 RDGLPLMEEDFRSRLGVPK 341 (343)
Q Consensus 323 ~e~l~~~~~~~~~~~~~~~ 341 (343)
+|+|+++++||+++....+
T Consensus 311 ~~~l~~~~~~~~~~~~~~~ 329 (330)
T 2c20_A 311 KTIIEHAWNWHQKQPNGYE 329 (330)
T ss_dssp HHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHHHhhhccC
Confidence 9999999999988765543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=321.36 Aligned_cols=300 Identities=29% Similarity=0.437 Sum_probs=249.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-C-C---CeEEEEecCCCC-CccchhhhcCCCceEEEEcccCCcc-----cCCCCEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-E-K---NEVIVADNYFTG-SKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g-~---~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
|+|||||||||||++|+++|+++ + . ++|++++|.... ....+.......+++++.+|+.|+. +.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 68999999999999999999996 4 2 789999985422 2222322222357899999999863 4589999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
||+||.........++...++.|+.++.+++++|.+.++ ||||+||.++||.....+++|+ .+..+.+.|+.+|
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999987654334567788999999999999999999998 9999999999997766677887 5667788999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
..+|.+++.+..+++++++++||+++|||+... ..++..++..+..++.+.+++++.+.++++|++|+|++++.+++.
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 233 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC--CChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhC
Confidence 999999999988889999999999999998532 356777888888888888888888899999999999999999987
Q ss_pred CC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHH
Q 019309 258 EN-TGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335 (343)
Q Consensus 258 ~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~ 335 (343)
+. +++||+++++.+|+.|+++.+.+.+|.+.. +.+.+..+.......+|++|++++|||+|+++++|+|+++++||++
T Consensus 234 ~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 313 (337)
T 1r6d_A 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRE 313 (337)
T ss_dssp CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 65 569999999999999999999999998753 4444433323334568999999999999998999999999999976
Q ss_pred h
Q 019309 336 R 336 (343)
Q Consensus 336 ~ 336 (343)
+
T Consensus 314 ~ 314 (337)
T 1r6d_A 314 N 314 (337)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=324.06 Aligned_cols=304 Identities=24% Similarity=0.344 Sum_probs=247.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC------Cccchhhhc--CCCceEEEEcccCCcc-----cC-
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG------SKDNLKKWI--GHPRFELIRHDVTEPL-----LI- 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------~~~~~~~~~--~~~~~~~~~~d~~~~~-----~~- 93 (343)
|+|+||||||+||||++|+++|+++| ++|++++|.... ..+....+. ...+++++.+|+.+.. +.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence 46899999999999999999999999 999999985432 112221111 1246889999999863 22
Q ss_pred -CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-C
Q 019309 94 -EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-R 170 (343)
Q Consensus 94 -~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~ 170 (343)
++|+|||+||.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+++|+ ++..| .
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~-----~~~~p~~ 154 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA-----HPTGGCT 154 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCS
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCC-----CCCCCCC
Confidence 79999999987654444567788999999999999999999998 9999999999998777788888 45555 7
Q ss_pred CchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCC------CCC--CccHHHHHHHHHH-cCCCeEEec------
Q 019309 171 SCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRM------NID--DGRVVSNFIAQAL-RGEPLTVQK------ 233 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~------ 233 (343)
+.|+.+|..+|.+++.++.+ + ++++++||+++|||.. ... ...++..++.... .+..+.+++
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (348)
T 1ek6_A 155 NPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTE 233 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSS
T ss_pred CchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCC
Confidence 88999999999999999877 5 9999999999999853 111 1346666666666 566777766
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcC--C-C-cceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHH
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGE--N-T-GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISK 309 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~--~-~-~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
++.+.+++||++|+|++++.+++.+ . + ++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|
T Consensus 234 ~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 313 (348)
T 1ek6_A 234 DGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSL 313 (348)
T ss_dssp SSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHH
T ss_pred CCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHH
Confidence 5678899999999999999999864 2 3 6999999999999999999999999887776665544445566789999
Q ss_pred HHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 310 AKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 310 ~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
++++|||+|+++++|+|+++++||+++..
T Consensus 314 ~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 314 AQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999987654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=323.43 Aligned_cols=305 Identities=20% Similarity=0.246 Sum_probs=246.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhcCCCceEEEEcccCCccc-----C--CCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWIGHPRFELIRHDVTEPLL-----I--EVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~vi 99 (343)
++|+||||||+||||++|++.|+++| ++|++++|....... .+.......+++++.+|+.|... . ++|+||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi 91 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 91 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 57999999999999999999999999 999999996543211 12211123478999999998632 2 479999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
|+||.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+++|+ ++..|.+.|+.+|
T Consensus 92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK 166 (335)
T 1rpn_A 92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAK 166 (335)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChhHHHH
Confidence 99997654444567888999999999999999999874 8999999999998777778888 5677788999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
..+|.+++.+..+++++++++||+.+|||+..... ...+..++..+..++. ...++++++.++++|++|+|++++.++
T Consensus 167 ~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~ 246 (335)
T 1rpn_A 167 LYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLML 246 (335)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHH
Confidence 99999999998888999999999999999753321 1335566666777764 345677889999999999999999999
Q ss_pred hcCCCcceEecCCCccCHHHHHHHHHHHhCCCcc--eEEcc--CCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHH
Q 019309 256 EGENTGPVNIGNPGEFTMLELAETVKELINPGIE--IKMVE--NTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEE 331 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~ 331 (343)
+++..++||+++++.+|+.|+++.+.+.+|.+.. +...+ ..+.......+|.+|++++|||+|+++++|+|+++++
T Consensus 247 ~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~ 326 (335)
T 1rpn_A 247 QQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVE 326 (335)
T ss_dssp HSSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHH
T ss_pred hcCCCCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHH
Confidence 9877889999999999999999999999997642 23322 1222334567899999999999999999999999999
Q ss_pred HHHHhhC
Q 019309 332 DFRSRLG 338 (343)
Q Consensus 332 ~~~~~~~ 338 (343)
||+++..
T Consensus 327 ~~~~~~~ 333 (335)
T 1rpn_A 327 ADLRRVS 333 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=325.25 Aligned_cols=300 Identities=26% Similarity=0.396 Sum_probs=248.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
++|+||||||+||||++|+++|+++| ++|++++|........ ...+++++.+|+.|.. +.++|+|||+|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 56899999999999999999999999 9999999964332211 1247889999999863 45899999999
Q ss_pred CCCCcccc-ccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC-----CCCCCCCCCCCCCCCCCCchHH
Q 019309 103 CPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI-----HPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~-----~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
+....... ..++...++.|+.++.+++++|++.++ ||||+||.++|+.... .+++|+.+ .+..+.+.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~---~~~~~~~~Y~~ 178 (379)
T 2c5a_A 102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFGL 178 (379)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG---SSBCCSSHHHH
T ss_pred eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccC---CCCCCCChhHH
Confidence 87543222 567888999999999999999999998 9999999999986432 23556531 14556788999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
+|..+|.+++.+..+++++++++||+++|||+...... .++..++..+..++. +.+++++.+.++++|++|+|++++
T Consensus 179 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~ 258 (379)
T 2c5a_A 179 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVL 258 (379)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHH
Confidence 99999999999988889999999999999998644322 367778888877776 777888888999999999999999
Q ss_pred HHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHH
Q 019309 253 RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~ 332 (343)
.+++.+.+++||+++++.+|+.|+++.+.+.+|.+.++...+.. .......+|++|++++|||+|+++++|+|+++++|
T Consensus 259 ~~l~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~ 337 (379)
T 2c5a_A 259 RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 337 (379)
T ss_dssp HHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC-CCCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred HHhhccCCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC-CCcccccCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99998778899999999999999999999999988776655542 23344578999999999999999999999999999
Q ss_pred HHHhh
Q 019309 333 FRSRL 337 (343)
Q Consensus 333 ~~~~~ 337 (343)
|+++.
T Consensus 338 ~~~~~ 342 (379)
T 2c5a_A 338 IKEQI 342 (379)
T ss_dssp HHHHH
T ss_pred HHHhH
Confidence 98764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=320.66 Aligned_cols=305 Identities=27% Similarity=0.468 Sum_probs=244.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-c-----cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-L-----LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~d~vi~~a 102 (343)
|+|||||||||||++|+++|+++ | ++|++++|.... ........+++++.+|+.+. . +.++|+|||+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcch----HHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 68999999999999999999998 8 999999985422 22223345799999999874 2 23699999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCC-CC-CCCCCchHHhHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNV-NP-IGVRSCYDEGKRVA 180 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~-~~-~~~~~~Y~~~K~~~ 180 (343)
|...+.....++...++.|+.++.+++++|++.+.||||+||.++|+.....+++|+.+... .+ ..+.+.|+.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~ 155 (345)
T 2bll_A 76 AIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLL 155 (345)
T ss_dssp CCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHH
T ss_pred cccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHH
Confidence 87654444567788899999999999999999888999999999999876667777743210 11 13456899999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
|.+++.+..+.+++++++||+.+|||+... ....++..++..+..++.+.+++++.+.++++|++|+|++++.+
T Consensus 156 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 235 (345)
T 2bll_A 156 DRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRI 235 (345)
T ss_dssp HHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHH
Confidence 999999988889999999999999998542 11346778888888998888888888899999999999999999
Q ss_pred HhcCC----CcceEecCCC-ccCHHHHHHHHHHHhCCCcceEEccCC---------------CCCCCccccChHHHHHhc
Q 019309 255 MEGEN----TGPVNIGNPG-EFTMLELAETVKELINPGIEIKMVENT---------------PDDPRQRKPDISKAKELL 314 (343)
Q Consensus 255 ~~~~~----~~~~~~~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l 314 (343)
++.+. +++||+++++ .+|+.|+++.+.+.+|.+......+.. ........+|.+|++++|
T Consensus 236 ~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 315 (345)
T 2bll_A 236 IENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCL 315 (345)
T ss_dssp HHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHH
T ss_pred HhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcccHHHHHHhc
Confidence 98652 5689999986 899999999999999865332111111 012234567999999999
Q ss_pred CCcccccHHhHHHHHHHHHHHhhCC
Q 019309 315 GWEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 315 g~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
||+|+++++|+|+++++||+++.+.
T Consensus 316 G~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 316 DWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred CCCccccHHHHHHHHHHHHHHcCCC
Confidence 9999989999999999999887654
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=319.12 Aligned_cols=291 Identities=22% Similarity=0.325 Sum_probs=238.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi 99 (343)
|++|+||||||+||||++|+++|+++| ++|+++.|.. .+|+.|.. +. ++|+||
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~-------------------~~D~~d~~~~~~~~~~~~~d~vi 60 (321)
T 1e6u_A 1 MAKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD-------------------ELNLLDSRAVHDFFASERIDQVY 60 (321)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT-------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc-------------------cCCccCHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999999 9999887631 25666542 33 799999
Q ss_pred EecCCCCc-cccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHh
Q 019309 100 HLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~ 176 (343)
|+|+.... .....++...++.|+.++.+++++|++.++ ||||+||.++|+.....+++|+.+.. .+..|. +.|+.+
T Consensus 61 h~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~s 139 (321)
T 1e6u_A 61 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIA 139 (321)
T ss_dssp ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHH
T ss_pred EcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHH
Confidence 99986542 224567788899999999999999999998 99999999999987777788874321 134443 589999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHc----C-CCeEEecCCceeEeeeehHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALR----G-EPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
|..+|++++.++.+.+++++++||+++|||+.... ...++..++..+.. | ..+.++++++..+++||++|+|+
T Consensus 140 K~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~ 219 (321)
T 1e6u_A 140 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAA 219 (321)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHH
Confidence 99999999999888899999999999999986432 13567777776654 3 56777788889999999999999
Q ss_pred HHHHHHhcCC----------CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCccc
Q 019309 250 GLIRLMEGEN----------TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319 (343)
Q Consensus 250 ~i~~~~~~~~----------~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~ 319 (343)
+++.+++++. +++||+++++.+|+.|+++.+.+.+|.+.++...+..+.......+|.+|+++ |||+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~ 298 (321)
T 1e6u_A 220 ASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHE 298 (321)
T ss_dssp HHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCCC
T ss_pred HHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHHHh-cCCccC
Confidence 9999998764 37999999999999999999999999887776666544445567889999999 999999
Q ss_pred ccHHhHHHHHHHHHHHhhCC
Q 019309 320 VKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 320 ~~~~e~l~~~~~~~~~~~~~ 339 (343)
++++|+|+++++||+++...
T Consensus 299 ~~~~~~l~~~~~~~~~~~~~ 318 (321)
T 1e6u_A 299 ISLEAGLASTYQWFLENQDR 318 (321)
T ss_dssp CCHHHHHHHHHHHHHHTC--
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 89999999999999887653
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=320.92 Aligned_cols=306 Identities=21% Similarity=0.250 Sum_probs=245.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----C--CCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~vi 99 (343)
+.+|+||||||+||||++|+++|+++| ++|++++|................+++++.+|+.++.. . ++|+||
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 85 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 85 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999999 99999999654332221111113478999999998632 2 489999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCC-CCCCCCCCCCCCCCCCCCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLI-HPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
|+||.........++...++.|+.++.+++++|.+.+ + +|||+||.++||.... .+..|+ ++..+.+.|+.+
T Consensus 86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~s 160 (357)
T 1rkx_A 86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNS 160 (357)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHH
T ss_pred ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHH
Confidence 9998644334456778899999999999999999886 6 9999999999987543 356666 466677899999
Q ss_pred HHHHHHHHHHHHHHh---------CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 177 KRVAETLMFDYHRQH---------GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 177 K~~~E~~~~~~~~~~---------~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
|..+|.+++.+..++ +++++++||++||||+... ...++..++..+..+..+.+. ++...+++||++|+
T Consensus 161 K~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~v~v~Dv 238 (357)
T 1rkx_A 161 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPVIIR-NPHAIRPWQHVLEP 238 (357)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTCCEECS-CTTCEECCEETHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc-cccHHHHHHHHHhcCCCEEEC-CCCCeeccEeHHHH
Confidence 999999999988764 8999999999999997432 246788888888888877654 56788999999999
Q ss_pred HHHHHHHHhc------CCCcceEecCC--CccCHHHHHHHHHHHhCCCcceEEccC-CCCCCCccccChHHHHHhcCCcc
Q 019309 248 VDGLIRLMEG------ENTGPVNIGNP--GEFTMLELAETVKELINPGIEIKMVEN-TPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 248 a~~i~~~~~~------~~~~~~~~~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
|++++.+++. ..+++||++++ +.+|+.|+++.+.+.+|.+..+...+. .+.......+|.+|++++|||+|
T Consensus 239 a~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 318 (357)
T 1rkx_A 239 LSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHP 318 (357)
T ss_dssp HHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCCc
Confidence 9999999874 23779999974 689999999999999998766654432 12334456789999999999999
Q ss_pred cccHHhHHHHHHHHHHHhhCCC
Q 019309 319 KVKLRDGLPLMEEDFRSRLGVP 340 (343)
Q Consensus 319 ~~~~~e~l~~~~~~~~~~~~~~ 340 (343)
+++++|+|+++++||+++....
T Consensus 319 ~~~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 319 RWNLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998876543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=320.32 Aligned_cols=308 Identities=28% Similarity=0.393 Sum_probs=243.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhcCCCceEEEEcccCCcc-----cCC--CCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWIGHPRFELIRHDVTEPL-----LIE--VDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~-----~~~--~d~vi~~ 101 (343)
|+|||||||||||++|++.|+++| ++|++++|....... ....+....+++++.+|+.|+. +.+ +|+|||+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 789999999999999999999999 999999985322211 1222222346899999999863 224 9999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCC-----------CCCCCCCC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETY-----------WGNVNPIG 168 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~-----------~~~~~~~~ 168 (343)
||.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+..|+. .....+..
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~ 160 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 160 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence 987654334567888999999999999999999886 79999999999875544322211 01114556
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCC-----CeEEecCCceeEeee
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGE-----PLTVQKPGTQTRSFC 242 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v 242 (343)
+.+.|+.+|..+|.+++.++.++|++++++||++||||..... ...++..++..+..++ ++.+++++.+.++++
T Consensus 161 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 240 (347)
T 1orr_A 161 FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECE
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeE
Confidence 7788999999999999999888899999999999999975432 1346667777776665 677788888999999
Q ss_pred ehHHHHHHHHHHHhcC---CCcceEecCCC--ccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCc
Q 019309 243 YVSDMVDGLIRLMEGE---NTGPVNIGNPG--EFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWE 317 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~---~~~~~~~~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (343)
|++|+|++++.+++.. .++.||++++. .+|+.|+++.+.+.+|.+..+...+..........+|++|++++|||+
T Consensus 241 ~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 320 (347)
T 1orr_A 241 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWS 320 (347)
T ss_dssp EHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCC
T ss_pred EHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHHHHHHHHCCC
Confidence 9999999999999852 25599999886 599999999999999988777666644444455678999999999999
Q ss_pred ccccHHhHHHHHHHHHHHhhC
Q 019309 318 PKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 318 p~~~~~e~l~~~~~~~~~~~~ 338 (343)
|+++++|+|+++++||++...
T Consensus 321 p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 321 PKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CCSCHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 988999999999999988754
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=324.73 Aligned_cols=304 Identities=23% Similarity=0.364 Sum_probs=244.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHH-hcCCCeEEEEecCCCCC--------ccchhh----hcC---CCc---eEEEEcccCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVADNYFTGS--------KDNLKK----WIG---HPR---FELIRHDVTE 89 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~--------~~~~~~----~~~---~~~---~~~~~~d~~~ 89 (343)
+|+||||||+||||++|++.|+ ++| ++|++++|..... .+.+.. ... ..+ ++++.+|+.+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 5899999999999999999999 999 9999999864332 111211 101 124 8899999998
Q ss_pred cc-----cC--C-CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCC-------C
Q 019309 90 PL-----LI--E-VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-------I 153 (343)
Q Consensus 90 ~~-----~~--~-~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~-------~ 153 (343)
+. +. + +|+|||+||.........++...++.|+.++.+++++|++.++ +|||+||.++|+... .
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence 63 22 5 9999999997654334567788999999999999999999998 999999999998765 5
Q ss_pred CCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCC-------CCccHHHHHH----HH
Q 019309 154 HPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI-------DDGRVVSNFI----AQ 222 (343)
Q Consensus 154 ~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~-------~~~~~~~~~~----~~ 222 (343)
.+++|+ ++..|.+.|+.+|..+|.+++.++.+++++++++||++||||+... ....++..++ ..
T Consensus 161 ~~~~E~-----~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (397)
T 1gy8_A 161 EPIDIN-----AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD 235 (397)
T ss_dssp CCBCTT-----SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHH
T ss_pred cCcCcc-----CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHH
Confidence 677787 5667788999999999999999998889999999999999997421 1234555554 24
Q ss_pred HHcCC------------CeEEec------CCceeEeeeehHHHHHHHHHHHhcCC--C--------cceEecCCCccCHH
Q 019309 223 ALRGE------------PLTVQK------PGTQTRSFCYVSDMVDGLIRLMEGEN--T--------GPVNIGNPGEFTML 274 (343)
Q Consensus 223 ~~~~~------------~~~~~~------~~~~~~~~v~v~D~a~~i~~~~~~~~--~--------~~~~~~~~~~~s~~ 274 (343)
+..+. .+.+++ ++.+.+++||++|+|++++.+++... . ++||+++++.+|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~ 315 (397)
T 1gy8_A 236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVR 315 (397)
T ss_dssp HSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHH
T ss_pred HHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHH
Confidence 44443 466665 57788999999999999999997532 3 79999999999999
Q ss_pred HHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccc-cHHhHHHHHHHHHHHhhC
Q 019309 275 ELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKV-KLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 275 e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~~~~~~~~~~ 338 (343)
|+++.+.+.+|.+.++...+..........+|++|++++|||+|++ +++|+|+++++||+++..
T Consensus 316 e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 316 EVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp HHHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhccc
Confidence 9999999999988777666554445556788999999999999998 999999999999987643
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=313.23 Aligned_cols=304 Identities=24% Similarity=0.345 Sum_probs=239.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL-------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~-------~~~d~vi~ 100 (343)
|+||||||+||||++|+++|+++| ++|++++|............. ...++.++.+|+.++.. .++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih 79 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence 689999999999999999999999 999999874332222221110 12367889999998632 25999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHHhHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKR 178 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~~K~ 178 (343)
+||.........++...++.|+.++.+++++|++.++ +|||+||.++|+.....+.+|+ .+..+ .+.|+.+|.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~~Y~~sK~ 154 (338)
T 1udb_A 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVES-----FPTGTPQSPYGKSKL 154 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTT-----SCCCCCSSHHHHHHH
T ss_pred CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcc-----cCCCCCCChHHHHHH
Confidence 9987554334456778899999999999999999888 9999999999987766677777 34433 678999999
Q ss_pred HHHHHHHHHHHHh-CCceEEEEeccccCCCC------CCC--CccHHHHHHHHHH-cCCCeEEec------CCceeEeee
Q 019309 179 VAETLMFDYHRQH-GIQIRIARIFNTYGPRM------NID--DGRVVSNFIAQAL-RGEPLTVQK------PGTQTRSFC 242 (343)
Q Consensus 179 ~~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v 242 (343)
.+|.+++.++.+. +++++++||+++|||.. .+. ...++..++.... .+..+.+++ ++.+.+++|
T Consensus 155 ~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 234 (338)
T 1udb_A 155 MVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234 (338)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEE
T ss_pred HHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeE
Confidence 9999999998776 79999999999999842 111 1345555555544 344566554 456789999
Q ss_pred ehHHHHHHHHHHHhcC--C--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcc
Q 019309 243 YVSDMVDGLIRLMEGE--N--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~--~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
|++|+|++++.+++.. . .++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|++++|||+|
T Consensus 235 ~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 314 (338)
T 1udb_A 235 HVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRV 314 (338)
T ss_dssp EHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCC
T ss_pred EHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCc
Confidence 9999999999999753 2 25899999999999999999999999877766665544455566789999999999999
Q ss_pred cccHHhHHHHHHHHHHHhhCC
Q 019309 319 KVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 319 ~~~~~e~l~~~~~~~~~~~~~ 339 (343)
+++++|+|+++++||+++...
T Consensus 315 ~~~l~~~l~~~~~w~~~~~~~ 335 (338)
T 1udb_A 315 TRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp CCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999876543
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=317.59 Aligned_cols=299 Identities=28% Similarity=0.438 Sum_probs=243.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCC-CCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFT-GSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~ 100 (343)
|+||||||+||||++|++.|+++ | ++|++++|... ...+.+..+....+++++.+|+.|.. +. ++|+|||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence 68999999999999999999998 7 99999998542 22222322222357899999999863 22 7999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc--CC--------eEEEEeCCcccCCCCC--C--------CCCCCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA--------RILLTSTSEVYGDPLI--H--------PQPETY 160 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~--~~--------r~i~~SS~~v~~~~~~--~--------~~~e~~ 160 (343)
+||.........++...++.|+.++.+++++|.+. ++ +|||+||.++||.... . +++|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~- 158 (361)
T 1kew_A 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET- 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT-
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC-
Confidence 99976543445677889999999999999999987 63 8999999999986532 1 56666
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.+..+.+.|+.+|..+|.+++.++.+++++++++||+.||||.... ..++..++..+..++.+.+++++...++
T Consensus 159 ----~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T 1kew_A 159 ----TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp ----SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred ----CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCc--ccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence 5667778999999999999999988889999999999999998532 3467778888888888888888888999
Q ss_pred eeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc--------eEEccCCCCCCCccccChHHHH
Q 019309 241 FCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIE--------IKMVENTPDDPRQRKPDISKAK 311 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
++|++|+|++++.+++... +++||+++++.+|+.|+++.+.+.+|.+.+ +...+..+.......+|++|++
T Consensus 233 ~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~k~~ 312 (361)
T 1kew_A 233 WLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKIS 312 (361)
T ss_dssp EEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHH
T ss_pred eEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCHHHHH
Confidence 9999999999999998766 569999999999999999999999985432 2333322222334578999999
Q ss_pred HhcCCcccccHHhHHHHHHHHHHHh
Q 019309 312 ELLGWEPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 312 ~~lg~~p~~~~~e~l~~~~~~~~~~ 336 (343)
++|||+|+++++|+|+++++||+++
T Consensus 313 ~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 313 RELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999765
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=313.38 Aligned_cols=271 Identities=20% Similarity=0.212 Sum_probs=232.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~ 100 (343)
|+|+|||||||||||++|++.|+++| ++|++++|. .+|+.|.. +. ++|+|||
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------~~D~~d~~~~~~~~~~~~~d~vi~ 62 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEE-YDIYPFDKK--------------------LLDITNISQVQQVVQEIRPHIIIH 62 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT--------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc--------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence 44699999999999999999999999 999999982 25565542 22 6999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
+|+.........++...++.|+.++.+++++|++.++||||+||.++|+.....+++|+ ++..|.+.|+.+|..+
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 137 (287)
T 3sc6_A 63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIYGASKYAG 137 (287)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHHHHHHHHH
Confidence 99987655566788999999999999999999999999999999999998888889998 6778889999999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCC
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~ 260 (343)
|++++.+ +.+++++||+.+|||+. ..++..++..+..++.+.+.++ +.++++|++|+|++++.+++++.+
T Consensus 138 E~~~~~~----~~~~~ilR~~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~ 207 (287)
T 3sc6_A 138 EQFVKEL----HNKYFIVRTSWLYGKYG----NNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSLY 207 (287)
T ss_dssp HHHHHHH----CSSEEEEEECSEECSSS----CCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHh----CCCcEEEeeeeecCCCC----CcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhCCCC
Confidence 9999876 44789999999999873 4577888888888888877653 789999999999999999998888
Q ss_pred cceEecCCCccCHHHHHHHHHHHhCCCcceEEcc-----CCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHH
Q 019309 261 GPVNIGNPGEFTMLELAETVKELINPGIEIKMVE-----NTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~ 335 (343)
++||+++++.+|+.|+++.+.+.+|.+..+...+ .....+....+|.+|++ +|||.|.++++|+|+++++|+++
T Consensus 208 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 208 GTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp EEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred CeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 8999999999999999999999999887766543 22344456678999999 89999999999999999999754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=316.04 Aligned_cols=303 Identities=22% Similarity=0.222 Sum_probs=242.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhc------CCCceEEEEcccCCccc-----C--CC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWI------GHPRFELIRHDVTEPLL-----I--EV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~------~~~~~~~~~~d~~~~~~-----~--~~ 95 (343)
|+||||||+||||++|++.|+++| ++|++++|...... ..+..+. ...+++++.+|+.|+.. . ++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 103 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 103 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence 789999999999999999999999 99999999643311 1122211 12478899999998632 1 47
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC----eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~----r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
|+||||||.........++...++.|+.++.+++++|.+.++ +|||+||.++|+.....+++|+ ++..|.+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~ 178 (375)
T 1t2a_A 104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 178 (375)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCC
Confidence 999999997654434567788899999999999999999874 8999999999998777778888 5667778
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.|+.+|..+|.+++.++.+++++++++||+.+|||+..... ...+..++..+..+.. ...++++++.++++|++|+|+
T Consensus 179 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~ 258 (375)
T 1t2a_A 179 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 258 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHH
Confidence 99999999999999999888999999999999999753221 1234556666666754 345677888999999999999
Q ss_pred HHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceE-------------------Ecc--CCCCCCCccccChH
Q 019309 250 GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK-------------------MVE--NTPDDPRQRKPDIS 308 (343)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~~~~ 308 (343)
+++.+++++..++||+++++.+|+.|+++.+.+.+|.+..+. ..+ ..+.......+|++
T Consensus 259 a~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 338 (375)
T 1t2a_A 259 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCT 338 (375)
T ss_dssp HHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCH
T ss_pred HHHHHHhcCCCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhhcCCHH
Confidence 999999987789999999999999999999999999875422 111 11222334567999
Q ss_pred HHHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 309 KAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 309 ~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
|++++|||+|+++++|+|+++++||++...
T Consensus 339 k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 368 (375)
T 1t2a_A 339 KAKQKLNWKPRVAFDELVREMVHADVELMR 368 (375)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=310.74 Aligned_cols=308 Identities=24% Similarity=0.262 Sum_probs=244.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhhcCCCceEEEEcccCCccc-----C--CCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKWIGHPRFELIRHDVTEPLL-----I--EVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~v 98 (343)
|++|+||||||+||||++|+++|+++| ++|++++|....... .+.......+++++.+|+.|+.. . ++|+|
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 79 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV 79 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 357999999999999999999999999 999999996533221 22222223478999999998632 1 47999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHh
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
||+||.........++...++.|+.++.+++++|.+.++ +|||+||.++||.....+++|+ .+..+.+.|+.+
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~s 154 (345)
T 2z1m_A 80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVA 154 (345)
T ss_dssp EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHH
T ss_pred EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHH
Confidence 999997654444567888999999999999999998874 8999999999998777777887 566777899999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
|..+|.+++.++.+++++++++|+.++|||+..... ...+..++..+..++. ....+++...++++|++|+|++++.+
T Consensus 155 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~ 234 (345)
T 2z1m_A 155 KLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLM 234 (345)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHH
Confidence 999999999999888999999999999999853321 1223444555566654 33556777889999999999999999
Q ss_pred HhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceE-------------------Ecc--CCCCCCCccccChHHHHHh
Q 019309 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIK-------------------MVE--NTPDDPRQRKPDISKAKEL 313 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~~~ 313 (343)
++++..+.||+++++.+|+.|+++.+.+.+|.+.++. ..+ ..+.......+|++|++++
T Consensus 235 ~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 314 (345)
T 2z1m_A 235 MQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKK 314 (345)
T ss_dssp HTSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHH
T ss_pred HhCCCCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHHHHHHH
Confidence 9987778999999999999999999999999875432 111 1122233456799999999
Q ss_pred cCCcccccHHhHHHHHHHHHHHhhCCC
Q 019309 314 LGWEPKVKLRDGLPLMEEDFRSRLGVP 340 (343)
Q Consensus 314 lg~~p~~~~~e~l~~~~~~~~~~~~~~ 340 (343)
|||+|+++++|+|+++++||+++....
T Consensus 315 lG~~p~~~~~~~l~~~~~~~~~~~~~~ 341 (345)
T 2z1m_A 315 LGWKPRTTFDELVEIMMEADLKRVRDR 341 (345)
T ss_dssp HCCCCCSCHHHHHHHHHHHHHHHHHC-
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhccc
Confidence 999998899999999999998876543
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=314.76 Aligned_cols=302 Identities=21% Similarity=0.249 Sum_probs=240.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhcC-----CC-ceEEEEcccCCccc-----C--C
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIG-----HP-RFELIRHDVTEPLL-----I--E 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~-----~~-~~~~~~~d~~~~~~-----~--~ 94 (343)
+|+||||||+||||++|++.|+++| ++|++++|...... ..+..... .. +++++.+|+.|... . +
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 106 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 106 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence 4799999999999999999999999 99999999643311 11111111 12 78899999998632 2 4
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC------eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~------r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+|+|||+||.........++...++.|+.++.+++++|.+.++ +|||+||.++||.... +++|+ ++..
T Consensus 107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~ 180 (381)
T 1n7h_A 107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFH 180 (381)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCC
T ss_pred CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCC
Confidence 7999999997654444567888999999999999999987653 8999999999997665 78887 5667
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSD 246 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D 246 (343)
|.+.|+.+|..+|.+++.+..+++++++++|++.+|||+..... ...+..++..+..+.. ...++++...++++|++|
T Consensus 181 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~D 260 (381)
T 1n7h_A 181 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGD 260 (381)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHH
Confidence 78899999999999999999888999999999999999753221 1234455666666654 344577788999999999
Q ss_pred HHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcc--eEEcc--CCCCCCCccccChHHHHHhcCCcccccH
Q 019309 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIE--IKMVE--NTPDDPRQRKPDISKAKELLGWEPKVKL 322 (343)
Q Consensus 247 ~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 322 (343)
+|++++.+++.+..++||+++++.+|+.|+++.+.+.+|.+.. +.+.+ ..+.......+|++|++++|||+|++++
T Consensus 261 va~a~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 340 (381)
T 1n7h_A 261 YVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGF 340 (381)
T ss_dssp HHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCH
T ss_pred HHHHHHHHHhCCCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCcccCCH
Confidence 9999999999877889999999999999999999999997642 33322 1222334456799999999999998899
Q ss_pred HhHHHHHHHHHHHhh
Q 019309 323 RDGLPLMEEDFRSRL 337 (343)
Q Consensus 323 ~e~l~~~~~~~~~~~ 337 (343)
+|+|+++++||+++.
T Consensus 341 ~e~l~~~~~~~~~~~ 355 (381)
T 1n7h_A 341 EKLVKMMVDEDLELA 355 (381)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998765
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=311.25 Aligned_cols=305 Identities=23% Similarity=0.265 Sum_probs=240.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhcC-----CCceEEEEcccCCccc-----C--CC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIG-----HPRFELIRHDVTEPLL-----I--EV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~-----~~~~~~~~~d~~~~~~-----~--~~ 95 (343)
+|+||||||+||||++|+++|+++| ++|++++|...... +.+..... ..+++++.+|+.|... . ++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999999999 99999998643211 11221111 2478899999998632 1 47
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC----eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~----r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
|+|||+||.........++...++.|+.++.+++++|.+.++ +|||+||.++|+.....+.+|+ .+..|.+
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~ 154 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRS 154 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCS
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCC
Confidence 999999997654445567788899999999999999999874 8999999999998766678887 5667788
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.|+.+|..+|.+++.++.+++++++++|++.+|||+..... ...+..++..+..+.. ...++++++.++++|++|+|+
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~ 234 (372)
T 1db3_A 155 PYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVK 234 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHH
Confidence 99999999999999999888999999999999999754321 1334556666677763 445677889999999999999
Q ss_pred HHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEE-----------------------------cc--CCCC
Q 019309 250 GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKM-----------------------------VE--NTPD 298 (343)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~-----------------------------~~--~~~~ 298 (343)
+++.+++++..++||+++++.+|+.|+++.+.+.+|.+.++.. .+ ..+.
T Consensus 235 a~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1db3_A 235 MQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPA 314 (372)
T ss_dssp HHHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCC
T ss_pred HHHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccccccCCC
Confidence 9999998877789999999999999999999999986543221 01 1122
Q ss_pred CCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhCC
Q 019309 299 DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
......+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 315 ~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 355 (372)
T 1db3_A 315 EVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (372)
T ss_dssp C-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhc
Confidence 22345679999999999999989999999999999887654
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=309.94 Aligned_cols=291 Identities=21% Similarity=0.253 Sum_probs=231.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~v 98 (343)
|+|+|||||||||||++|+++|+++ | ++|++++|..... ... .+++++.+|+.|.. +. ++|+|
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~--~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~v 72 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNT--DVV-----NSGPFEVVNALDFNQIEHLVEVHKITDI 72 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSC--HHH-----HSSCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCccc--ccc-----CCCceEEecCCCHHHHHHHHhhcCCCEE
Confidence 4689999999999999999999999 8 9999999864331 111 25778999999863 22 79999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC-CCCCCCCCCCCCCCCCCCchHHh
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI-HPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
||+|+.... ....++...++.|+.++.+++++|++.++ ||||+||.++|+.... .+.+|+ .+..|.+.|+.+
T Consensus 73 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~s 146 (312)
T 2yy7_A 73 YLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGIS 146 (312)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHH
T ss_pred EECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHH
Confidence 999986542 23467788999999999999999999998 9999999999987532 455666 566778899999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
|..+|.+++.+..+++++++++||+.+|||...+... ..+...+.....++.+.++++++..++++|++|+|++++.+
T Consensus 147 K~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 226 (312)
T 2yy7_A 147 KQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINI 226 (312)
T ss_dssp HHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHH
Confidence 9999999999988889999999999999986543321 23334444455556667777788899999999999999999
Q ss_pred HhcCC-----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC---CCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 255 MEGEN-----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP---DDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 255 ~~~~~-----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
++++. +++||+++ +.+|+.|+++.+.+.+| ...+.+.+... .......+|++|++++|||+|+++++|+|
T Consensus 227 ~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l 304 (312)
T 2yy7_A 227 MKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMT 304 (312)
T ss_dssp HHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCT-TCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HhCcccccccCceEEeCC-CccCHHHHHHHHHHHCC-CCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHHHH
Confidence 98764 27999986 89999999999999997 33444433210 01123467999999999999999999999
Q ss_pred HHHHHHHH
Q 019309 327 PLMEEDFR 334 (343)
Q Consensus 327 ~~~~~~~~ 334 (343)
+++++||+
T Consensus 305 ~~~~~~~k 312 (312)
T 2yy7_A 305 KDMIEHLS 312 (312)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999984
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=309.05 Aligned_cols=294 Identities=20% Similarity=0.290 Sum_probs=235.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC-----CCCE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI-----EVDQ 97 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~~d~ 97 (343)
.+|+|||||||||||++|+++|+++|.++|++++|..... ..... .++. +.+|+.+.. +. ++|+
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~---~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~ 118 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNL---VDLN-IADYMDKEDFLIQIMAGEEFGDVEA 118 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGG--GGGGT---TTSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcc--hhhcc---cCce-EeeecCcHHHHHHHHhhcccCCCCE
Confidence 5689999999999999999999999867899998854321 11111 1222 556766542 22 5999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
|||+|+.... ...++...++.|+.++.+++++|.+.++||||+||.++|+.....+++|+ .+..|.+.|+.+|
T Consensus 119 Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK 191 (357)
T 2x6t_A 119 IFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVFGYSK 191 (357)
T ss_dssp EEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHHHHHH
T ss_pred EEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChhHHHH
Confidence 9999986543 45677889999999999999999998889999999999998776788888 5667778999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCce-eEeeeehHHHHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQ-TRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~D~a~~i~~~ 254 (343)
..+|.+++.+..+.+++++++||++||||+..... ..++..++..+..++.+.+++++.. .++++|++|+|++++.+
T Consensus 192 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~ 271 (357)
T 2x6t_A 192 FLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF 271 (357)
T ss_dssp HHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHH
Confidence 99999999998888999999999999999754321 3577788888888888888888888 89999999999999999
Q ss_pred HhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC----CCCCccccChHHHHHhcCC-cccccHHhHHHHH
Q 019309 255 MEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP----DDPRQRKPDISKAKELLGW-EPKVKLRDGLPLM 329 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~-~p~~~~~e~l~~~ 329 (343)
++.+.+++||+++++.+|+.|+++.+.+.+|.+ .+...+... .......+|.+++++ ||| .|.++++|+|+++
T Consensus 272 ~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~ 349 (357)
T 2x6t_A 272 LENGVSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEY 349 (357)
T ss_dssp HHHCCCEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHH
T ss_pred HhcCCCCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH-cCCCCCCCCHHHHHHHH
Confidence 987667799999999999999999999999987 444333221 122345678999986 999 7888999999999
Q ss_pred HHHHHHh
Q 019309 330 EEDFRSR 336 (343)
Q Consensus 330 ~~~~~~~ 336 (343)
++||+++
T Consensus 350 ~~~~~~~ 356 (357)
T 2x6t_A 350 MAWLNRD 356 (357)
T ss_dssp HHHHC--
T ss_pred HHHHhhc
Confidence 9999654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=313.88 Aligned_cols=308 Identities=24% Similarity=0.259 Sum_probs=239.5
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----------------cchhhh--cCCCceEEEEccc
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----------------DNLKKW--IGHPRFELIRHDV 87 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~d~ 87 (343)
...+|+||||||+||||++|+++|+++| ++|++++|...... +.+... ....+++++.+|+
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl 86 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI 86 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence 3467999999999999999999999999 99999987421110 001100 1124789999999
Q ss_pred CCcc-----cCC--CCEEEEecCCCCccccccChH---HHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCC
Q 019309 88 TEPL-----LIE--VDQIYHLACPASPIFYKYNPV---KTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 88 ~~~~-----~~~--~d~vi~~a~~~~~~~~~~~~~---~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~ 155 (343)
.++. +.+ +|+|||+||.........++. ..++.|+.++.+++++|++.++ +|||+||.++||... .+
T Consensus 87 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~ 165 (404)
T 1i24_A 87 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-ID 165 (404)
T ss_dssp TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SC
T ss_pred CCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CC
Confidence 9863 223 999999999765433333443 4779999999999999999884 899999999998754 45
Q ss_pred CCCCCCCCC---------CCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-------------C-
Q 019309 156 QPETYWGNV---------NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-------------D- 212 (343)
Q Consensus 156 ~~e~~~~~~---------~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-------------~- 212 (343)
.+|+.+... .+..|.+.|+.+|..+|.+++.++.++|++++++||++||||+.... .
T Consensus 166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 245 (404)
T 1i24_A 166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245 (404)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccc
Confidence 666533111 25566788999999999999999888899999999999999975321 0
Q ss_pred -ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--C--cceEecCCCccCHHHHHHHHHHH---h
Q 019309 213 -GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--T--GPVNIGNPGEFTMLELAETVKEL---I 284 (343)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~--~~~~~~~~~~~s~~e~~~~i~~~---~ 284 (343)
...+..++..+..++.+.+++++.+.+++||++|+|++++.+++.+. + ++||+++ +.+|+.|+++.+.+. +
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i~~~~~~~ 324 (404)
T 1i24_A 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLVTKAGSKL 324 (404)
T ss_dssp TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHHHHHHHhh
Confidence 35778889999999988888888899999999999999999998765 3 4899998 899999999999998 7
Q ss_pred CCCcceEEccCCCC--CCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 285 NPGIEIKMVENTPD--DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 285 g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
|.+..+...+.... ......+|++|++ +|||+|+++++++++.+++|++...
T Consensus 325 g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~ 378 (404)
T 1i24_A 325 GLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFK 378 (404)
T ss_dssp TCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred CCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhh
Confidence 77766555443322 2234567999998 6999999999999999999987554
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=303.05 Aligned_cols=286 Identities=15% Similarity=0.097 Sum_probs=225.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
++|+||||||+||||++|+++|+++| ++|++++|..... +.+ ...+++++.+|+.|+ .+.++|+|||+|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-~~l----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQI-QRL----AYLEPECRVAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCG-GGG----GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhh-hhh----ccCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 45799999999999999999999999 9999999964322 111 123788999999986 345899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC--CCCCCCCCCCCCCCCC----CCchHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI--HPQPETYWGNVNPIGV----RSCYDE 175 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~--~~~~e~~~~~~~~~~~----~~~Y~~ 175 (343)
+... ....++...++.|+.++.+++++|++.++ ||||+||.++|+.... .+ +|+ ++..| .+.|+.
T Consensus 86 ~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y~~ 157 (342)
T 2x4g_A 86 GYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSYVL 157 (342)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHHHH
T ss_pred ccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChHHH
Confidence 8643 23456677889999999999999999998 9999999999987554 34 676 56666 789999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+|..+|.+++.++.+ |++++++||+++|||... ... +..++..+..+..+.+ ++..++++|++|+|++++.++
T Consensus 158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~--~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~ 230 (342)
T 2x4g_A 158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELDI--GPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMAL 230 (342)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCS--SCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCc--ccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHH
Confidence 999999999998877 999999999999999751 112 4556677777776654 457889999999999999999
Q ss_pred hcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC---------------------------CCCCCccccCh
Q 019309 256 EGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT---------------------------PDDPRQRKPDI 307 (343)
Q Consensus 256 ~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------------------~~~~~~~~~~~ 307 (343)
+++. +++||+++++ +|+.|+++.+.+.+|.+..+ ..+.. ........+|+
T Consensus 231 ~~~~~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 308 (342)
T 2x4g_A 231 ERGRIGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDG 308 (342)
T ss_dssp HHSCTTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------CCTTCCCCBCC
T ss_pred hCCCCCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccCh
Confidence 8766 6799999999 99999999999999987654 32211 00123456899
Q ss_pred HHHHHhcCC-cccccHHhHHHHHHHHHHHhh
Q 019309 308 SKAKELLGW-EPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 308 ~~~~~~lg~-~p~~~~~e~l~~~~~~~~~~~ 337 (343)
+|++++||| +| ++++|+++++++||+++.
T Consensus 309 ~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 309 RKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp HHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 999999999 99 799999999999998764
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=303.49 Aligned_cols=273 Identities=18% Similarity=0.135 Sum_probs=226.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~a 102 (343)
|+|||||||||||++|+++|+ +| ++|++++|.. .++.+|+.|+. +. ++|+|||+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~----------------~~~~~D~~d~~~~~~~~~~~~~d~vih~a 62 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS----------------KEFCGDFSNPKGVAETVRKLRPDVIVNAA 62 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC----------------SSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc----------------ccccccCCCHHHHHHHHHhcCCCEEEECc
Confidence 689999999999999999999 89 9999999843 12457777653 22 399999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
+.........++...++.|+.++.+++++|++.++||||+||.++|+.....+++|+ ++..|.+.|+.+|..+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~ 137 (299)
T 1n2s_A 63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEK 137 (299)
T ss_dssp CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred ccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHHHHHHHHHHH
Confidence 876544456788889999999999999999998889999999999998777788888 567778899999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC----
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE---- 258 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~---- 258 (343)
+++.+ ..+++++||+++|||+. ..++..++..+..+..+.+.+ ++.++++|++|+|++++.+++++
T Consensus 138 ~~~~~----~~~~~ilRp~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~~~ 207 (299)
T 1n2s_A 138 ALQDN----CPKHLIFRTSWVYAGKG----NNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALNKP 207 (299)
T ss_dssp HHHHH----CSSEEEEEECSEECSSS----CCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHh----CCCeEEEeeeeecCCCc----CcHHHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhcccc
Confidence 99776 34899999999999973 246777888888888777654 37899999999999999999865
Q ss_pred -CCcceEecCCCccCHHHHHHHHHHHhCCC------cceEEccCC-----CCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 259 -NTGPVNIGNPGEFTMLELAETVKELINPG------IEIKMVENT-----PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 259 -~~~~~~~~~~~~~s~~e~~~~i~~~~g~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
.+++||+++++.+|+.|+++.+.+.+|.+ ..+...+.. ........+|.+|++++|||+|+ +++|+|
T Consensus 208 ~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l 286 (299)
T 1n2s_A 208 EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGV 286 (299)
T ss_dssp GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHH
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CHHHHH
Confidence 26799999999999999999999999865 233333221 12234567899999999999998 899999
Q ss_pred HHHHHHHHHh
Q 019309 327 PLMEEDFRSR 336 (343)
Q Consensus 327 ~~~~~~~~~~ 336 (343)
+++++||+++
T Consensus 287 ~~~~~~~~~~ 296 (299)
T 1n2s_A 287 KRMLTEMFTT 296 (299)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHhc
Confidence 9999999764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=295.54 Aligned_cols=268 Identities=20% Similarity=0.234 Sum_probs=225.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~ 101 (343)
.|+|||||||||||++|++.|+++| ++|++++|. .+|+.|.. +. ++|+|||+
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih~ 70 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVINC 70 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 4899999999999999999999999 999999884 25666542 22 69999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
||.........++...++.|+.++.+++++|++.++||||+||.++|+.....+++|+ ++..|.+.|+.+|..+|
T Consensus 71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~E 145 (292)
T 1vl0_A 71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGE 145 (292)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHHHHHHHHHH
Confidence 9876544445678889999999999999999998889999999999998776788888 56677789999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCc
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~ 261 (343)
.+++.+ +.+++++||+.+|||. ..++..++..+..+..+.+.+ +..++++|++|+|++++.+++.+.++
T Consensus 146 ~~~~~~----~~~~~~lR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~~ 214 (292)
T 1vl0_A 146 NFVKAL----NPKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNYG 214 (292)
T ss_dssp HHHHHH----CSSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCCE
T ss_pred HHHHhh----CCCeEEEeeeeeeCCC-----cChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcCCCc
Confidence 999775 4579999999999982 246677777777777776654 47889999999999999999877677
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC-----CCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENT-----PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
+||+++++.+|+.|+++.+.+.+|.+..+...+.. ........+|++|++++|||+|+ +++|+|+++++||+
T Consensus 215 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 215 TFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 291 (292)
T ss_dssp EEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred EEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhc
Confidence 99999999999999999999999987665544322 12334567899999999999999 99999999999985
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=299.89 Aligned_cols=269 Identities=16% Similarity=0.116 Sum_probs=218.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----CC-CCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----IE-VDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~-~d~vi~ 100 (343)
|++|+||||| +||||++|++.|+++| ++|++++|..... ..+++++.+|+.|... .+ +|+|||
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 3568999999 5999999999999999 9999999964321 2578999999988743 23 999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
+|+.. ..++...++.|+.++.+++++|++.++ ||||+||.++||.....+++|+ ++..|.+.|+.+|..
T Consensus 70 ~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 70 CVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRMLE 139 (286)
T ss_dssp CHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHHHH
T ss_pred eCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHHHH
Confidence 99742 345667788899999999999999998 9999999999998877788888 677788999999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc--
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG-- 257 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~-- 257 (343)
+|++ +.+ ++++++||+++|||+.. .++..+.. +.. .+++...+++||++|+|++++.++++
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~--------~~~~~~~~-~~~--~~~~~~~~~~i~v~Dva~~~~~~~~~~~ 202 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL--------RMIRQAQT-PEQ--WPARNAWTNRIHRDDGAAFIAYLIQQRS 202 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC--------HHHHHTTC-GGG--SCSSBCEECEEEHHHHHHHHHHHHHHHT
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch--------hHHHHHHh-ccc--CCCcCceeEEEEHHHHHHHHHHHHhhhc
Confidence 9998 553 89999999999999742 23344444 222 35677889999999999999999997
Q ss_pred -CC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccc-cHHhHHHHHHHHHH
Q 019309 258 -EN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKV-KLRDGLPLMEEDFR 334 (343)
Q Consensus 258 -~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~~~~~~ 334 (343)
.. +++||+++++.+|+.|+++.+.+.+|.+.++...+ .......+|.+|++ +|||+|++ +++|+|+++++|+.
T Consensus 203 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~ 278 (286)
T 3gpi_A 203 HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAAMR 278 (286)
T ss_dssp TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHT
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHh
Confidence 33 78999999999999999999999999876655433 34456678999998 89999998 69999999999986
Q ss_pred Hhh
Q 019309 335 SRL 337 (343)
Q Consensus 335 ~~~ 337 (343)
...
T Consensus 279 ~~~ 281 (286)
T 3gpi_A 279 EGH 281 (286)
T ss_dssp C--
T ss_pred ccc
Confidence 654
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=299.75 Aligned_cols=291 Identities=21% Similarity=0.302 Sum_probs=215.1
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC-----CCCEEEE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI-----EVDQIYH 100 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~~d~vi~ 100 (343)
+|||||||||||++|+++|+++|.++|++++|...... ..... ++. +.+|+.+.. +. ++|+|||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~---~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 74 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV---DLN-IADYMDKEDFLIQIMAGEEFGDVEAIFH 74 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH---TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC---cce-eccccccHHHHHHHHhccccCCCcEEEE
Confidence 58999999999999999999998678999988543211 11111 122 556766542 22 4999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
+|+.... ...++...++.|+.++.+++++|++.++||||+||.++|+.....+++|+ ++..|.+.|+.+|..+
T Consensus 75 ~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 147 (310)
T 1eq2_A 75 EGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLF 147 (310)
T ss_dssp CCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHH
T ss_pred CcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHH
Confidence 9986643 45677889999999999999999998889999999999998776678887 5667778999999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCce-eEeeeehHHHHHHHHHHHhc
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQ-TRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~D~a~~i~~~~~~ 257 (343)
|.+++.+..+.+++++++||+++|||+.... ...++..++..+..++.+.+++++.. .++++|++|+|++++.+++.
T Consensus 148 e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~ 227 (310)
T 1eq2_A 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLEN 227 (310)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhc
Confidence 9999999888899999999999999985421 13577788888888888777777778 89999999999999999987
Q ss_pred CCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC----CCCCccccChHHHHHhcCC-cccccHHhHHHHHHHH
Q 019309 258 ENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP----DDPRQRKPDISKAKELLGW-EPKVKLRDGLPLMEED 332 (343)
Q Consensus 258 ~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~-~p~~~~~e~l~~~~~~ 332 (343)
+.++.||+++++.+|+.|+++.+.+.+|.+ .+...+... .......+|.+++++ ||| .|.++++|+|+++++|
T Consensus 228 ~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~ 305 (310)
T 1eq2_A 228 GVSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAW 305 (310)
T ss_dssp CCCEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHH
Confidence 667799999999999999999999999876 333322211 112335678999986 999 7888999999999999
Q ss_pred HHHh
Q 019309 333 FRSR 336 (343)
Q Consensus 333 ~~~~ 336 (343)
|+++
T Consensus 306 ~~~~ 309 (310)
T 1eq2_A 306 LNRD 309 (310)
T ss_dssp TC--
T ss_pred HHhc
Confidence 8653
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=300.56 Aligned_cols=285 Identities=25% Similarity=0.372 Sum_probs=228.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi 99 (343)
+.+|+||||||+||||++|+++|+++| ++|++++|........... ..+++++.+|+.|.. +. ++|+||
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi 93 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPP---VAGLSVIEGSVTDAGLLERAFDSFKPTHVV 93 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGGSCS---CTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhhhhc---cCCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence 467999999999999999999999999 9999999954332211111 147899999999863 33 899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCC--CCCCCCCCCCCCCCCCCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIH--PQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~--~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
||||..... ...++. ++.|+.++.+++++|.+.++ +|||+||.++|+..... +++|+ + .+.+.|+.+
T Consensus 94 h~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~-----~--~~~~~Y~~s 163 (330)
T 2pzm_A 94 HSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSP-----T--APFTSYGIS 163 (330)
T ss_dssp ECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCC-----C--CCCSHHHHH
T ss_pred ECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCC-----C--CCCChHHHH
Confidence 999865432 222333 89999999999999999998 99999999999875444 67776 2 456789999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH-HHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD-GLIRLM 255 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~-~i~~~~ 255 (343)
|..+|.+++.+ +++++++||+++|||+. ...++..++..+..+. .+++++. .++++|++|+|+ +++.++
T Consensus 164 K~~~e~~~~~~----~~~~~~iR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~ 233 (330)
T 2pzm_A 164 KTAGEAFLMMS----DVPVVSLRLANVTGPRL---AIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQ 233 (330)
T ss_dssp HHHHHHHHHTC----SSCEEEEEECEEECTTC---CSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHc----CCCEEEEeeeeeECcCC---CCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHh
Confidence 99999998765 79999999999999984 2456667777777665 3444555 889999999999 999999
Q ss_pred hcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHH-----HHhcCCcccccHHhHHHHHH
Q 019309 256 EGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKA-----KELLGWEPKVKLRDGLPLME 330 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~lg~~p~~~~~e~l~~~~ 330 (343)
+.+.+++||+++++.+|+.|+++.+.+.+|.+ .+...+... ......+|++|+ ++ |||+|+++++|+|++++
T Consensus 234 ~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~ 310 (330)
T 2pzm_A 234 EGRPTGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQL 310 (330)
T ss_dssp TTCCCEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHH
T ss_pred hcCCCCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHH
Confidence 87556799999999999999999999999987 443333222 344567788888 77 99999889999999999
Q ss_pred HHHHHhhC
Q 019309 331 EDFRSRLG 338 (343)
Q Consensus 331 ~~~~~~~~ 338 (343)
+||++...
T Consensus 311 ~~~~~~~~ 318 (330)
T 2pzm_A 311 AWYDKYGV 318 (330)
T ss_dssp HHHHHHCS
T ss_pred HHHHhhCc
Confidence 99987654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=297.96 Aligned_cols=283 Identities=21% Similarity=0.303 Sum_probs=225.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCC--CCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIE--VDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~--~d~vi~ 100 (343)
.+|+||||||+||||++|+++|+++| ++|++++|......+.+.. ..+++++.+|+.|+. +.+ +|+|||
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih 95 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPDAVVH 95 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence 46899999999999999999999999 9999999864332222221 157899999999863 224 999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccC----CCCCCCCCCCCCCCCCCCCCC-CchH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG----DPLIHPQPETYWGNVNPIGVR-SCYD 174 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~----~~~~~~~~e~~~~~~~~~~~~-~~Y~ 174 (343)
+||..... ...++. ++.|+.++.+++++|.+.++ +|||+||.++|+ .... +++|+ + .|. +.|+
T Consensus 96 ~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~-----~--~p~~~~Y~ 164 (333)
T 2q1w_A 96 TAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHP-----R--NPANSSYA 164 (333)
T ss_dssp CCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSC-----C--CCTTCHHH
T ss_pred CceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCC-----C--CCCCCchH
Confidence 99865432 222333 89999999999999999998 999999999998 5444 77777 2 455 7899
Q ss_pred HhHHHHHHHHHH-HHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHH
Q 019309 175 EGKRVAETLMFD-YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR 253 (343)
Q Consensus 175 ~~K~~~E~~~~~-~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~ 253 (343)
.+|..+|.+++. +. +++++||+++|||+. ...++..++..+..+. .+++ +...++++|++|+|++++.
T Consensus 165 ~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~ 233 (333)
T 2q1w_A 165 ISKSANEDYLEYSGL-----DFVTFRLANVVGPRN---VSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVR 233 (333)
T ss_dssp HHHHHHHHHHHHHTC-----CEEEEEESEEESTTC---CSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhC-----CeEEEeeceEECcCC---cCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHH
Confidence 999999999977 53 899999999999982 2456777777777766 3444 5678899999999999999
Q ss_pred HHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC----CCCCccccChHHHHHhcCCcccccHHhHHHHH
Q 019309 254 LMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP----DDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~ 329 (343)
+++.+.+++||+++++.+|+.|+++.+.+.+|.+ .+...+... .......+|++|++++ ||+|.++++|+|+++
T Consensus 234 ~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~ 311 (333)
T 2q1w_A 234 AVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAA 311 (333)
T ss_dssp HHTTCCCEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHH
T ss_pred HHhcCCCCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc-CCCcCCCHHHHHHHH
Confidence 9987666799999999999999999999999976 433322211 1124567899999998 999988999999999
Q ss_pred HHHHHHhhC
Q 019309 330 EEDFRSRLG 338 (343)
Q Consensus 330 ~~~~~~~~~ 338 (343)
++||+++..
T Consensus 312 ~~~~~~~~~ 320 (333)
T 2q1w_A 312 VAYFREYGV 320 (333)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHCC
Confidence 999987643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=292.77 Aligned_cols=267 Identities=18% Similarity=0.140 Sum_probs=215.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
|+|+|||||| ||||++|+++|+++| ++|++++|... ....+ ...+++++.+|+.|..+.++|+|||+|+....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~-~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~ 76 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPD----QMEAI-RASGAEPLLWPGEEPSLDGVTHLLISTAPDSG 76 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGG----GHHHH-HHTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChh----hhhhH-hhCCCeEEEecccccccCCCCEEEECCCcccc
Confidence 4589999998 999999999999999 99999998532 11111 12579999999988767789999999986542
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHH--cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHH
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKR--VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLM 184 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~--~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~ 184 (343)
. + ..+.++++++++ .++ ||||+||.++||.....+++|+ ++..|.+.|+.+|..+|+++
T Consensus 77 ~----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~ 138 (286)
T 3ius_A 77 G----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAARGRWRVMAEQQW 138 (286)
T ss_dssp B----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred c----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 1 1 124688999988 677 8999999999998877788888 67778889999999999999
Q ss_pred HHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-Ccce
Q 019309 185 FDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPV 263 (343)
Q Consensus 185 ~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~~ 263 (343)
+.+ .+++++++||+++||++... +..+..+..+.+.++ .+.+++||++|+|++++.+++++. +++|
T Consensus 139 ~~~---~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~~g~~~ 205 (286)
T 3ius_A 139 QAV---PNLPLHVFRLAGIYGPGRGP---------FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDPGAVY 205 (286)
T ss_dssp HHS---TTCCEEEEEECEEEBTTBSS---------STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCCTTCEE
T ss_pred Hhh---cCCCEEEEeccceECCCchH---------HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCCCCCEE
Confidence 877 58999999999999997433 233455666666554 578999999999999999999877 5699
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCcceEEccCC--CC------CCCccccChHHHHHhcCCcccc-cHHhHHHHHHHH
Q 019309 264 NIGNPGEFTMLELAETVKELINPGIEIKMVENT--PD------DPRQRKPDISKAKELLGWEPKV-KLRDGLPLMEED 332 (343)
Q Consensus 264 ~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~~~~ 332 (343)
|+++++.+|+.|+++.+.+.+|.+......... .. ......+|.+|++++|||+|++ +++|+|+++++.
T Consensus 206 ~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 206 NVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp EECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 999999999999999999999987654332211 11 1244568999999999999998 799999999874
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=297.34 Aligned_cols=281 Identities=20% Similarity=0.235 Sum_probs=202.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccC-------CCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi~ 100 (343)
|+|+|||||||||||++|+++|+++| ++|++++|.... .+ ++.+|+.++... ++|+|||
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih 66 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVH 66 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-------------------------------CHHHHHHHCCSEEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEE
Confidence 47899999999999999999999999 999999984321 12 677888876422 4899999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
+||.........++...++.|+.++.+++++|.+.++||||+||.++|+. ...+++|+ ++..|.+.|+.+|..+
T Consensus 67 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 67 CAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLYGKTKLDG 140 (315)
T ss_dssp CC-------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHHHHHHHHH
T ss_pred CCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHHHHHHHHH
Confidence 99876544445677788999999999999999998889999999999987 56677887 5667778999999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHH-cCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC-
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL-RGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE- 258 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~- 258 (343)
|.+++.+ +++++++||+.|||+..... ..++..++.... .+..+.+. ++..++++|++|+|++++.++++.
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~~~~ 213 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLE-ESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLAEKRM 213 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGG-GSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCccc-ccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHHHhhc
Confidence 9999765 57889999999999975421 134445566666 67666654 356789999999999999999753
Q ss_pred ----CCcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccC----CCCCCCccccChHHHHHhcCCcccccHHhHHHHH
Q 019309 259 ----NTGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVEN----TPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329 (343)
Q Consensus 259 ----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~ 329 (343)
.+++||+++++.+|+.|+++.+.+.+|.+.. +...+. ....+....+|++|++++ ||+|.++++|+|+++
T Consensus 214 ~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~ 292 (315)
T 2ydy_A 214 LDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGIKES 292 (315)
T ss_dssp TCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHHHHH
T ss_pred cccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHHHHHH
Confidence 3779999999999999999999999998754 333322 112334567899999997 999999999999999
Q ss_pred HHHHHHh
Q 019309 330 EEDFRSR 336 (343)
Q Consensus 330 ~~~~~~~ 336 (343)
++||+++
T Consensus 293 ~~~~~~~ 299 (315)
T 2ydy_A 293 LWPFLID 299 (315)
T ss_dssp HGGGCC-
T ss_pred HHHHccc
Confidence 9999765
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=294.08 Aligned_cols=291 Identities=25% Similarity=0.311 Sum_probs=231.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cC--CCCEEEEe
Q 019309 31 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL 101 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~d~vi~~ 101 (343)
+||||||+||||++|+++|+++ | ++|++++|..... .+++++.+|+.|+. +. ++|+|||+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~ 69 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDT----------GGIKFITLDVSNRDEIDRAVEKYSIDAIFHL 69 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCC----------TTCCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCccc----------cCceEEEecCCCHHHHHHHHhhcCCcEEEEC
Confidence 5999999999999999999999 7 9999998853221 14678899999863 22 79999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCC-CCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-IHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
|+.... ....++...++.|+.++.+++++|++.++ +|||+||.++|+... ..+.+|+ .+..|.+.|+.+|..
T Consensus 70 a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 70 AGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTKIA 143 (317)
T ss_dssp CCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHHHH
T ss_pred CcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHHHH
Confidence 986532 23457788899999999999999999998 999999999998642 3345565 566778899999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
+|.+++.+..+++++++++||+.+||+...+.. ..++...+.....++.+..++++...++++|++|+|++++.++++
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 223 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEA 223 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhC
Confidence 999999998888999999999999997643321 123344445556666677777778899999999999999999987
Q ss_pred CC-----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC---CCCCccccChHHHHHhcCCcccccHHhHHHHH
Q 019309 258 EN-----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP---DDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329 (343)
Q Consensus 258 ~~-----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~ 329 (343)
+. +++||+++ ..+|+.|+++.+.+.+| ...+.+.+... .......+|++|++++|||+|+++++|+++++
T Consensus 224 ~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~ 301 (317)
T 3ajr_A 224 DRDKLVLRNGYNVTA-YTFTPSELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTIDDM 301 (317)
T ss_dssp CGGGCSSCSCEECCS-EEECHHHHHHHHHTTCC-SCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHH
T ss_pred CccccccCceEecCC-ccccHHHHHHHHHHHCC-ccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 54 37899986 68999999999999987 33444433200 01123467999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 019309 330 EEDFRSRLGVP 340 (343)
Q Consensus 330 ~~~~~~~~~~~ 340 (343)
++||+++....
T Consensus 302 ~~~~~~~~~~~ 312 (317)
T 3ajr_A 302 IDHISEKLGIE 312 (317)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHhhhccc
Confidence 99998886543
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=321.51 Aligned_cols=308 Identities=27% Similarity=0.453 Sum_probs=246.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQI 98 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~v 98 (343)
++++|+||||||+||||++|+++|+++ | ++|++++|..... .......+++++.+|+.+.. +.++|+|
T Consensus 312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~----~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~V 386 (660)
T 1z7e_A 312 ARRRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAI----SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVV 386 (660)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTT----GGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred hccCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhh----hhhccCCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence 346789999999999999999999998 7 9999999864322 22223457999999999753 2269999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCC-CCC-CCCCCchHHh
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGN-VNP-IGVRSCYDEG 176 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~-~~~-~~~~~~Y~~~ 176 (343)
||+||.........++...++.|+.++.+++++|.+.+.||||+||.++|+.....+++|+.+.. ..+ ..|.+.|+.+
T Consensus 387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~s 466 (660)
T 1z7e_A 387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVS 466 (660)
T ss_dssp EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHH
T ss_pred EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHH
Confidence 99999765444556788899999999999999999988899999999999987767778874311 011 1455689999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI------DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
|..+|.+++.++.+.|++++++||+++|||+... ....++..++..+..+..+.+++++++.++++|++|+|++
T Consensus 467 K~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 546 (660)
T 1z7e_A 467 KQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 546 (660)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHH
Confidence 9999999999988889999999999999998532 1245677888888889888888878889999999999999
Q ss_pred HHHHHhcCC----CcceEecCCC-ccCHHHHHHHHHHHhCCCcceEEccC---------------CCCCCCccccChHHH
Q 019309 251 LIRLMEGEN----TGPVNIGNPG-EFTMLELAETVKELINPGIEIKMVEN---------------TPDDPRQRKPDISKA 310 (343)
Q Consensus 251 i~~~~~~~~----~~~~~~~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 310 (343)
++.+++.+. +++||+++++ .+|+.|+++.+.+.+|.+......+. .........+|++|+
T Consensus 547 i~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka 626 (660)
T 1z7e_A 547 LYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNA 626 (660)
T ss_dssp HHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCCBCCHHH
T ss_pred HHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcccCHHHH
Confidence 999998653 5689999986 89999999999999975422111111 001234457899999
Q ss_pred HHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 311 KELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 311 ~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
+++|||+|+++++|+|+++++||+++..
T Consensus 627 ~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 627 HRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 9999999988999999999999988764
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=320.20 Aligned_cols=305 Identities=23% Similarity=0.354 Sum_probs=233.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCcc-----cC--CCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPL-----LI--EVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~-----~~--~~d~ 97 (343)
+++|+||||||+||||++|+++|+++| ++|++++|...........+ +...+++++.+|+.++. +. ++|+
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~ 87 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS 87 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 467899999999999999999999999 99999998643322211111 11357889999999863 22 7999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCC----CCCCCCCCCCCCCCCCCCCc
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL----IHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~----~~~~~e~~~~~~~~~~~~~~ 172 (343)
|||+||.........++...++.|+.++.+++++|++.++ ||||+||.++|+... ..+.+|+ .+..|.+.
T Consensus 88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~ 162 (699)
T 1z45_A 88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNP 162 (699)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSH
T ss_pred EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCCh
Confidence 9999987654334456678899999999999999999988 999999999998643 2456666 46667789
Q ss_pred hHHhHHHHHHHHHHHHHH--hCCceEEEEeccccCCCCCC----C----CccHHHHHHHHHHc-CCCeEEec------CC
Q 019309 173 YDEGKRVAETLMFDYHRQ--HGIQIRIARIFNTYGPRMNI----D----DGRVVSNFIAQALR-GEPLTVQK------PG 235 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~--~~~~~~i~R~~~v~G~~~~~----~----~~~~~~~~~~~~~~-~~~~~~~~------~~ 235 (343)
|+.+|.++|++++.++.+ .+++++++||+++||+.... + ...++..+...... ++++.+++ ++
T Consensus 163 Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 242 (699)
T 1z45_A 163 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDG 242 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCC
Confidence 999999999999998876 68999999999999985321 1 12344444333332 24555555 56
Q ss_pred ceeEeeeehHHHHHHHHHHHhcC------C--CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccCh
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGE------N--TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDI 307 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~------~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
.+.+++||++|+|++++.+++.. . .++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|.
T Consensus 243 ~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~ 322 (699)
T 1z45_A 243 TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKP 322 (699)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCC
T ss_pred CeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCH
Confidence 78899999999999999998741 2 468999999999999999999999998766554443333445567899
Q ss_pred HHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 308 SKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 308 ~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
+|++++|||+|+++++|+|+++++||+++.
T Consensus 323 ~ka~~~LG~~p~~~l~egl~~~~~w~~~~~ 352 (699)
T 1z45_A 323 DRAKRELKWQTELQVEDSCKDLWKWTTENP 352 (699)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998764
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=292.80 Aligned_cols=296 Identities=20% Similarity=0.220 Sum_probs=236.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCC------CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----c-C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----L-I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 93 (343)
.+++|+||||||+||||++|+++|+++|. ++|++++|....... ....+++++.+|+.|+. + .
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~ 85 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEA 85 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhc
Confidence 45778999999999999999999999984 589999986432211 12357889999999873 2 3
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-----C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-----~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
++|+|||+||... .....++...++.|+.++.+++++|++.+ + +|||+||.++|+.....+++|+ ++.
T Consensus 86 ~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~ 159 (342)
T 2hrz_A 86 RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHT 159 (342)
T ss_dssp CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCC
T ss_pred CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCC
Confidence 7999999998653 22345778889999999999999999876 6 9999999999987656678888 566
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccC-CCCCCCC-ccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG-PRMNIDD-GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
.+.+.|+.+|..+|.+++.+..+.+++.+++|++.+|| |+..... ..++..++.....++.+.+...+....+++|++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPR 239 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehH
Confidence 77889999999999999999888789999999999999 6542211 346777888888888777666666778899999
Q ss_pred HHHHHHHHHHhcC-----CCcceEecCCCccCHHHHHHHHHHHhCCCc--ceEEccCCC----CCCCccccChHHHHHhc
Q 019309 246 DMVDGLIRLMEGE-----NTGPVNIGNPGEFTMLELAETVKELINPGI--EIKMVENTP----DDPRQRKPDISKAKELL 314 (343)
Q Consensus 246 D~a~~i~~~~~~~-----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~l 314 (343)
|+|++++.+++.+ ..+.||++ ++.+|+.|+++.+.+.+|.+. .+...+... .......+|++|+++ |
T Consensus 240 Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-l 317 (342)
T 2hrz_A 240 SAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRARE-L 317 (342)
T ss_dssp HHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHHH-T
T ss_pred HHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHHHHH-c
Confidence 9999999999875 35689996 578999999999999998654 244333210 011123579999998 9
Q ss_pred CCcccccHHhHHHHHHHHHH
Q 019309 315 GWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 315 g~~p~~~~~e~l~~~~~~~~ 334 (343)
||+|+++++|+|+++++||+
T Consensus 318 G~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 318 GFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp TCCCCSSHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHhc
Confidence 99998899999999999997
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=291.04 Aligned_cols=300 Identities=18% Similarity=0.165 Sum_probs=227.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEE-EcccCCcc-----cCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELI-RHDVTEPL-----LIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~-~~d~~~~~-----~~~~d~ 97 (343)
+++|+||||||+||||++|+++|+++| ++|++++|.... ...+...+ ...+++++ .+|+.|.. +.++|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASK-LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCccc-HHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 567999999999999999999999999 999999985321 11111111 11468888 89998763 337999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHH-cCC-eEEEEeCCcccCCCCC----CCCCCCCCCC--------
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA-RILLTSTSEVYGDPLI----HPQPETYWGN-------- 163 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~-~~~-r~i~~SS~~v~~~~~~----~~~~e~~~~~-------- 163 (343)
|||+|+.... ..++...++.|+.++.+++++|.+ .++ ||||+||.++|+.... .+++|+.+..
T Consensus 87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence 9999986542 246778899999999999999985 566 9999999999865322 4677775321
Q ss_pred ---CCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCc-cHHHHHHHHHHcCCCeEEecCCce
Q 019309 164 ---VNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDG-RVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 164 ---~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
..+..|.+.|+.+|..+|.+++.+..++ +++++++||+++|||....... ..+..++..+..++.+.+.+++ +
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM-P 242 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTC-C
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccC-C
Confidence 0133456789999999999999998876 6889999999999998654322 3777888888888877655554 6
Q ss_pred eEeeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGW 316 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 316 (343)
.++++|++|+|++++.+++.+. .|.+++++++.+|+.|+++.+.+.+|.. .+.. +..........+|.+|++++|||
T Consensus 243 ~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~d~~k~~~~lg~ 320 (342)
T 1y1p_A 243 PQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSK-TFPA-DFPDQGQDLSKFDTAPSLEILKS 320 (342)
T ss_dssp SEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTS-CCCC-CCCCCCCCCCEECCHHHHHHHHH
T ss_pred cCCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCc-cCCC-CCCccccccccCChHHHHHHHhh
Confidence 7899999999999999998754 5555566678899999999999999864 2211 11111122356799999998887
Q ss_pred ---cccccHHhHHHHHHHHHH
Q 019309 317 ---EPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 317 ---~p~~~~~e~l~~~~~~~~ 334 (343)
.+.++++|+|+++++||+
T Consensus 321 ~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 321 LGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp TTCCSCCCHHHHHHHHHCCSC
T ss_pred cccCCcCCHHHHHHHHHHHhh
Confidence 355599999999999874
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=289.19 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=208.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc--chhhhcCCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD--NLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
|+|+||||||+||||++|+++|+++| ++|+++.|....... .+..+....+++++.+|+.|+. +.++|+|||
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 86 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFH 86 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence 47899999999999999999999999 999998885432111 1111111246889999998864 347999999
Q ss_pred ecCCCCccccccCh-HHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcc-cCCC---CCCCCCCCCCCCCCCCCC---C
Q 019309 101 LACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEV-YGDP---LIHPQPETYWGNVNPIGV---R 170 (343)
Q Consensus 101 ~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v-~~~~---~~~~~~e~~~~~~~~~~~---~ 170 (343)
+|+.... ...++ .+.++.|+.++.+++++|.+.+ + ||||+||.++ |+.. ...+++|+.+...+...+ .
T Consensus 87 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (338)
T 2rh8_A 87 VATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPP 164 (338)
T ss_dssp ESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CC
T ss_pred eCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCc
Confidence 9986531 22333 3478999999999999999986 7 9999999874 4321 113677775433222112 1
Q ss_pred -CchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC------CceeEeeee
Q 019309 171 -SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP------GTQTRSFCY 243 (343)
Q Consensus 171 -~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~ 243 (343)
..|+.+|..+|.+++.+..++|++++++||++||||+........+..+. ....+.... ++. +...++++|
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~i~ 242 (338)
T 2rh8_A 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAM-SLITGNEFL-INGMKGMQMLSGSVSIAH 242 (338)
T ss_dssp CCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHH-HHHHTCHHH-HHHHHHHHHHHSSEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-cccccccccccCcccEEE
Confidence 25999999999999998877899999999999999986433222222222 223443221 111 112358999
Q ss_pred hHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC-CcceEEccCCCCCCCccccChHHHHHhcCCccccc
Q 019309 244 VSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP-GIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVK 321 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~ 321 (343)
++|+|++++.+++.+. .+.|++++ +.+|+.|+++.+.+.++. +.+....+ ... .....+|++|+ ++|||+|+++
T Consensus 243 v~Dva~a~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~d~~k~-~~lG~~p~~~ 318 (338)
T 2rh8_A 243 VEDVCRAHIFVAEKESASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGD-FPP-KSKLIISSEKL-VKEGFSFKYG 318 (338)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTT-SCS-SCSCCCCCHHH-HHHTCCCSCC
T ss_pred HHHHHHHHHHHHcCCCcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCC-CCc-CcceeechHHH-HHhCCCCCCC
Confidence 9999999999998755 67787765 579999999999998752 22111111 111 11267899999 6699999999
Q ss_pred HHhHHHHHHHHHHHhh
Q 019309 322 LRDGLPLMEEDFRSRL 337 (343)
Q Consensus 322 ~~e~l~~~~~~~~~~~ 337 (343)
++|+|+++++||++..
T Consensus 319 l~~gl~~~~~~~~~~~ 334 (338)
T 2rh8_A 319 IEEIYDESVEYFKAKG 334 (338)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=281.11 Aligned_cols=298 Identities=20% Similarity=0.245 Sum_probs=206.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec-CCCC--CccchhhhcC-CCceEEEEcccCCcc-----cCCCCEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTG--SKDNLKKWIG-HPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
+|+||||||+||||++|+++|+++| ++|+++.| .... ....+..+.. ..+++++.+|+.|+. +.++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 5899999999999999999999999 99999887 4311 1111111100 125788899999864 34799999
Q ss_pred EecCCCCccccccCh-HHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcccC-CC-CCCCCCCCCCCCCC---CCCCCC
Q 019309 100 HLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYG-DP-LIHPQPETYWGNVN---PIGVRS 171 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v~~-~~-~~~~~~e~~~~~~~---~~~~~~ 171 (343)
|+|+... ....++ ...++.|+.++.+++++|.+. ++ ||||+||.+++. .. ...+++|+.+.... +..|..
T Consensus 80 h~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 9997531 222232 358899999999999999988 67 999999988543 22 12345665322110 112222
Q ss_pred -chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 172 -CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 172 -~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
.|+.+|..+|.++.++..++|++++++||++||||.........+..+ .....+....+ +. ..++++|++|+|++
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~-~~~~~g~~~~~-~~--~~~~~i~v~Dva~a 233 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKA-LVLVLGKKEQI-GV--TRFHMVHVDDVARA 233 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHH-THHHHSCGGGC-CE--EEEEEEEHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHH-HHHHhCCCccC-cC--CCcCEEEHHHHHHH
Confidence 599999999999999887789999999999999997543222222222 22234443322 11 34589999999999
Q ss_pred HHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEcc-CCC-CCCCccccChHHHHHhcCCcccccHHhHHH
Q 019309 251 LIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVE-NTP-DDPRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 251 i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
++.+++.+. .|.|| ++++.+|+.|+++.+.+.++. ..+.... ... .......+|++|+ ++|||+|+++++|+|+
T Consensus 234 ~~~~~~~~~~~g~~~-~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~~~l~ 310 (322)
T 2p4h_X 234 HIYLLENSVPGGRYN-CSPFIVPIEEMSQLLSAKYPE-YQILTVDELKEIKGARLPDLNTKKL-VDAGFDFKYTIEDMFD 310 (322)
T ss_dssp HHHHHHSCCCCEEEE-CCCEEEEHHHHHHHHHHHCTT-SCCCCTTTTTTCCCEECCEECCHHH-HHTTCCCCCCHHHHHH
T ss_pred HHHHhhCcCCCCCEE-EcCCCCCHHHHHHHHHHhCCC-CCCCCCccccCCCCCcceecccHHH-HHhCCccCCCHHHHHH
Confidence 999998754 56788 667899999999999988742 1111110 000 1113456899999 5699999999999999
Q ss_pred HHHHHHHHh
Q 019309 328 LMEEDFRSR 336 (343)
Q Consensus 328 ~~~~~~~~~ 336 (343)
++++||+++
T Consensus 311 ~~~~~~~~~ 319 (322)
T 2p4h_X 311 DAIQCCKEK 319 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999865
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=279.72 Aligned_cols=288 Identities=15% Similarity=0.105 Sum_probs=221.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC----CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCC---CC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK----NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIE---VD 96 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~---~d 96 (343)
+|+|||||||||||++|+++|+++|. ++|++++|...... ....+++++.+|+.|+. +.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 48999999999999999999999984 78999999643322 12357899999999863 334 99
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc--CC-eEE-------EEeCCcccCCC--CCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RIL-------LTSTSEVYGDP--LIHPQPETYWGNV 164 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~--~~-r~i-------~~SS~~v~~~~--~~~~~~e~~~~~~ 164 (343)
+|||+|+... .++...++.|+.++.+++++|++. ++ +|| |+||.++||.. ...+++|+.
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~---- 145 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDL---- 145 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTS----
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccc----
Confidence 9999998542 467788999999999999999998 67 787 89999999874 345677773
Q ss_pred CCCCC-CCchHHhHHHHHHHHHHHHHHhC-CceEEEEeccccCCCCCCCCccHHHHH-HHHH--HcCCCeEEecCC---c
Q 019309 165 NPIGV-RSCYDEGKRVAETLMFDYHRQHG-IQIRIARIFNTYGPRMNIDDGRVVSNF-IAQA--LRGEPLTVQKPG---T 236 (343)
Q Consensus 165 ~~~~~-~~~Y~~~K~~~E~~~~~~~~~~~-~~~~i~R~~~v~G~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~---~ 236 (343)
+..+ .+.| ..+|+.++++..+++ ++++++||++||||+...........+ +..+ ..+..+.+++++ .
T Consensus 146 -~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 220 (364)
T 2v6g_A 146 -PRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWD 220 (364)
T ss_dssp -CCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHH
T ss_pred -cCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCccccc
Confidence 3333 4567 458999988877666 999999999999998643223334442 3333 367766666665 3
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccCHHHHHHHHHHHhCCCcceE--EccCC----------------
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFTMLELAETVKELINPGIEIK--MVENT---------------- 296 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~--~~~~~---------------- 296 (343)
..++++|++|+|++++.+++++. +++||+++++.+|+.|+++.+.+.+|.+.... ..+..
T Consensus 221 ~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 300 (364)
T 2v6g_A 221 GYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIV 300 (364)
T ss_dssp SCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHHHHH
Confidence 45788999999999999998764 55999999999999999999999999764422 11110
Q ss_pred ------CC---CC-----------Cc-cccChHHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 297 ------PD---DP-----------RQ-RKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 297 ------~~---~~-----------~~-~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
.. .. .. ..+|.+|+++ |||+|.++++|+++++++||+++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 301 RENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 00 00 23 4789999988 999998899999999999998754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=275.31 Aligned_cols=273 Identities=18% Similarity=0.142 Sum_probs=209.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
|||||||||||||++|+++|+++| |+|++++|+.... .+. .-++....+.++|+|||+|+......
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~~-----------~~~--~~~~~~~~l~~~d~vihla~~~i~~~ 66 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGPG-----------RIT--WDELAASGLPSCDAAVNLAGENILNP 66 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCTT-----------EEE--HHHHHHHCCCSCSEEEECCCCCSSCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCcC-----------eee--cchhhHhhccCCCEEEEeccCcccch
Confidence 899999999999999999999999 9999999853211 111 11222335568999999997432111
Q ss_pred ----cccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 110 ----YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 110 ----~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
.......+.+.|+.++.++++++.+.+. +||+.||.++||.....+.+|+ ++..+.+.|+..+...|.
T Consensus 67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~~~~~~~~e~ 141 (298)
T 4b4o_A 67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFFSNLVTKWEA 141 (298)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchhHHHHHHHHH
Confidence 1223356788999999999999998876 4899999999999888888998 677777888888877776
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-Cc
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TG 261 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~ 261 (343)
... ....+++++++||+.||||+ +..+..++.....+... ..+++.+.+++||++|+|+++..+++++. .|
T Consensus 142 ~~~--~~~~~~~~~~~r~~~v~g~~-----~~~~~~~~~~~~~~~~~-~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g 213 (298)
T 4b4o_A 142 AAR--LPGDSTRQVVVRSGVVLGRG-----GGAMGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEANHVHG 213 (298)
T ss_dssp HHC--CSSSSSEEEEEEECEEECTT-----SHHHHHHHHHHHTTCCC-CBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCE
T ss_pred HHH--hhccCCceeeeeeeeEEcCC-----CCchhHHHHHHhcCCcc-eecccCceeecCcHHHHHHHHHHHHhCCCCCC
Confidence 432 23458999999999999996 34556666655555543 45788899999999999999999999876 88
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC-----------CCCccccChHHHHHhcCCcccc-cHHhHHHHH
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD-----------DPRQRKPDISKAKELLGWEPKV-KLRDGLPLM 329 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~ 329 (343)
+||+++++++|+.|+++.+++.+|++..+.. |.... .......+++|+.+ +||++++ +++++|+++
T Consensus 214 ~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pv-P~~~~~~~~g~~~~~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l 291 (298)
T 4b4o_A 214 VLNGVAPSSATNAEFAQTFGAALGRRAFIPL-PSAVVQAVFGRQRAIMLLEGQKVIPRRTLA-TGYQYSFPELGAALKEI 291 (298)
T ss_dssp EEEESCSCCCBHHHHHHHHHHHHTCCCCCCB-CHHHHHHHHCHHHHHHHHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHH
T ss_pred eEEEECCCccCHHHHHHHHHHHhCcCCcccC-CHHHHHHHhcchhHHHhhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHH
Confidence 9999999999999999999999997654321 11000 00123456788874 9999998 699999998
Q ss_pred HH
Q 019309 330 EE 331 (343)
Q Consensus 330 ~~ 331 (343)
++
T Consensus 292 ~~ 293 (298)
T 4b4o_A 292 AE 293 (298)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=275.54 Aligned_cols=300 Identities=20% Similarity=0.260 Sum_probs=209.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cC--CCceEEEEcccCCcc-----cCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IG--HPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~--~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
++|+||||||+||||++|+++|+++| ++|+++.|+.... .....+ +. ..+++++.+|+.|+. +.++|+|
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 81 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNV-KKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV 81 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCH-HHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchh-HHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence 56899999999999999999999999 9999998854211 111111 11 125889999999864 3479999
Q ss_pred EEecCCCCccccccChH-HHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcc-cCCCC-CCCCCCCCCCCCCC----CCC
Q 019309 99 YHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEV-YGDPL-IHPQPETYWGNVNP----IGV 169 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~-~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v-~~~~~-~~~~~e~~~~~~~~----~~~ 169 (343)
||+|+... ....++. ..++.|+.++.+++++|.+.+ + ||||+||.++ |+... ..+++|+.+...+. ..+
T Consensus 82 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (337)
T 2c29_D 82 FHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMT 159 (337)
T ss_dssp EECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred EEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCc
Confidence 99998652 2223343 578999999999999999987 6 8999999884 44322 23456653221100 113
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
...|+.+|.++|.++..+..++|++++++||++||||.........+...+ ....+... .+... ....++|++|+|+
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~-~~~~~i~v~Dva~ 236 (337)
T 2c29_D 160 AWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITAL-SPITGNEA-HYSII-RQGQFVHLDDLCN 236 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHT-HHHHTCGG-GHHHH-TEEEEEEHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCCc-ccccc-CCCCEEEHHHHHH
Confidence 447999999999999998877899999999999999975432121221111 12333322 11111 2345999999999
Q ss_pred HHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC-CcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHH
Q 019309 250 GLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP-GIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
+++.+++++. .+.|+++ +..+|+.|+++.+.+.++. ..+..+.+ .........+|++|+ ++|||+|+++++|+++
T Consensus 237 a~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~k~-~~lG~~p~~~l~e~l~ 313 (337)
T 2c29_D 237 AHIYLFENPKAEGRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKG-VDENLKSVCFSSKKL-TDLGFEFKYSLEDMFT 313 (337)
T ss_dssp HHHHHHHCTTCCEEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTT-CCTTCCCCEECCHHH-HHHTCCCCCCHHHHHH
T ss_pred HHHHHhcCcccCceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCc-ccCCCccccccHHHH-HHcCCCcCCCHHHHHH
Confidence 9999998755 5677554 4678999999999998732 22111111 111233456899999 7799999999999999
Q ss_pred HHHHHHHHhh
Q 019309 328 LMEEDFRSRL 337 (343)
Q Consensus 328 ~~~~~~~~~~ 337 (343)
++++||++..
T Consensus 314 ~~~~~~~~~~ 323 (337)
T 2c29_D 314 GAVDTCRAKG 323 (337)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998763
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=262.91 Aligned_cols=260 Identities=22% Similarity=0.204 Sum_probs=211.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----C--CCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~d~vi~~a 102 (343)
|+||||||+||||++++++|++ | ++|++++|.... . .+ +.+|+.|+.. . ++|+|||+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r~~~~-----~-----~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a 65 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVYNSSEI-----Q-----GG---YKLDLTDFPRLEDFIIKKRPDVIINAA 65 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEESSSCC-----T-----TC---EECCTTSHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-CeEEEecCCCcC-----C-----CC---ceeccCCHHHHHHHHHhcCCCEEEECC
Confidence 6899999999999999999994 8 999999986421 1 12 7899988632 2 499999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
|.........++...++.|+.++.+++++|++.++||||+||.++|+.... +++|+ ++..|.+.|+.+|..+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~-----~~~~~~~~Y~~sK~~~e~ 139 (273)
T 2ggs_A 66 AMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEE-----DIPNPINYYGLSKLLGET 139 (273)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred cccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCC-----CCCCCCCHHHHHHHHHHH
Confidence 976544345678889999999999999999998889999999999976543 67777 566677899999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcc
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~ 262 (343)
+++. ++++++||+.|||+ ..+...++.....+..+.+.++ .++++|++|+|++++.+++++..|.
T Consensus 140 ~~~~------~~~~~iR~~~v~G~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~~g~ 204 (273)
T 2ggs_A 140 FALQ------DDSLIIRTSGIFRN------KGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRKTGI 204 (273)
T ss_dssp HHCC------TTCEEEEECCCBSS------SSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTCCEE
T ss_pred HHhC------CCeEEEeccccccc------cHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCcCCe
Confidence 9865 68899999999983 2455666677777877776543 7899999999999999999877789
Q ss_pred eEecCCCccCHHHHHHHHHHHhCCCcceEEccC----CCCCCCccccChHHHHHhcCCcc-cccHHhHH
Q 019309 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVEN----TPDDPRQRKPDISKAKELLGWEP-KVKLRDGL 326 (343)
Q Consensus 263 ~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lg~~p-~~~~~e~l 326 (343)
||+++ +.+|+.|+++.+.+.+|.+.++..... .........+|++|++++|||+| .+++++++
T Consensus 205 ~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 205 IHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp EECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred EEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 99999 999999999999999998766543211 12234456789999999999999 56888865
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=285.12 Aligned_cols=277 Identities=17% Similarity=0.132 Sum_probs=204.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC---cccCCCCEEEEecCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPA 105 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~d~vi~~a~~~ 105 (343)
+|+|||||||||||++|++.|+++| ++|++++|..... +.+.+|+.+ ..+.++|+|||||+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~~-------------~~v~~d~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPKP-------------GKRFWDPLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCCT-------------TCEECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCc-------------cceeecccchhHHhcCCCCEEEECCCCc
Confidence 6899999999999999999999999 9999999964321 114455543 3456899999999865
Q ss_pred Ccc-ccccChHHHHHHHHHHHHHHHHH-HHHcCC-eEEEEeCCcccC-CCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 106 SPI-FYKYNPVKTIKTNVIGTLNMLGL-AKRVGA-RILLTSTSEVYG-DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 106 ~~~-~~~~~~~~~~~~nv~~~~~l~~~-a~~~~~-r~i~~SS~~v~~-~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
... ....++..+++.|+.++.+++++ +++.++ +|||+||.++|| .....+++|+ .+. +.+.|+.+|...|
T Consensus 213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~-----~~~-~~~~y~~~~~~~E 286 (516)
T 3oh8_A 213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEE-----SES-GDDFLAEVCRDWE 286 (516)
T ss_dssp ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTT-----SCC-CSSHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCC-----CCC-CcChHHHHHHHHH
Confidence 432 23445677889999999999999 666777 899999999998 5555677787 343 6678999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-C
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-T 260 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~ 260 (343)
..+... ...|++++++||++||||+ ..++..++..+..+.. ...+++.+.+++||++|+|++++.+++++. .
T Consensus 287 ~~~~~~-~~~gi~~~ilRp~~v~Gp~-----~~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~ 359 (516)
T 3oh8_A 287 HATAPA-SDAGKRVAFIRTGVALSGR-----GGMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQIS 359 (516)
T ss_dssp HTTHHH-HHTTCEEEEEEECEEEBTT-----BSHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHH-HhCCCCEEEEEeeEEECCC-----CChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCcccC
Confidence 876544 4569999999999999997 2455556555444443 345778889999999999999999999876 7
Q ss_pred cceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC----CCC-------CccccChHHHHHhcCCccccc-HHhHHHH
Q 019309 261 GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP----DDP-------RQRKPDISKAKELLGWEPKVK-LRDGLPL 328 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~lg~~p~~~-~~e~l~~ 328 (343)
|.||+++++.+|+.|+++.+.+.+|.+..+....... ... ....++.+|++ .|||+|+++ ++++|++
T Consensus 360 g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~-~lG~~~~~~~l~e~l~~ 438 (516)
T 3oh8_A 360 GPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALE-NLSHTFRYTDIGAAIAH 438 (516)
T ss_dssp EEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHH-HTTCCCSCSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHH-HCCCCCCCCCHHHHHHH
Confidence 8999999999999999999999998765332211110 011 12345778888 599999986 9999999
Q ss_pred HHHHH
Q 019309 329 MEEDF 333 (343)
Q Consensus 329 ~~~~~ 333 (343)
++++.
T Consensus 439 ~l~~~ 443 (516)
T 3oh8_A 439 ELGYE 443 (516)
T ss_dssp HHTCC
T ss_pred HhCcc
Confidence 98753
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=264.83 Aligned_cols=298 Identities=18% Similarity=0.145 Sum_probs=217.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc--cchhh----h-------cCCCceEEEEcccCCcc---
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK--DNLKK----W-------IGHPRFELIRHDVTEPL--- 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~-------~~~~~~~~~~~d~~~~~--- 91 (343)
.+|+|||||||||||++|++.|++.| ++|++++|...... ..+.. . ....++.++.+|+.++.
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 35799999999999999999999999 99999999643110 00100 0 01257999999999853
Q ss_pred -cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCC-----CCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-----PLIHPQPETYWGNV 164 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~-----~~~~~~~e~~~~~~ 164 (343)
..++|+||||||... ...++...++.|+.++.+++++|.+ ++ +|||+||.++ |. ....+++|+++.
T Consensus 147 ~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~-- 219 (427)
T 4f6c_A 147 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVY-- 219 (427)
T ss_dssp CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC--
T ss_pred CcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccc--
Confidence 347999999998654 2356677889999999999999999 55 9999999999 54 234566776432
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-----ccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-----GRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
.+..+.+.|+.+|+.+|.+++.+.. .|++++++||++|||+...... ..++..++.....++.++. +.++..+
T Consensus 220 ~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 297 (427)
T 4f6c_A 220 KGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPV 297 (427)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEE
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceE
Confidence 1244678899999999999999764 6999999999999999754321 2457788888888876664 3457889
Q ss_pred eeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC------------------CCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP------------------DDP 300 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------~~~ 300 (343)
++++++|+|++++.+++.+. +++||+++++++++.|+++.+.+ +| .+....+... ...
T Consensus 298 ~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 374 (427)
T 4f6c_A 298 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQDMYETIGLTSVDREQ 374 (427)
T ss_dssp CCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred EEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcCchhhhhhhhccccC
Confidence 99999999999999998775 77999999999999999999998 55 2221111000 011
Q ss_pred CccccChHHHH---HhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 301 RQRKPDISKAK---ELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 301 ~~~~~~~~~~~---~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
....+|.++.. +.+||.+....++.++.+++++.+...
T Consensus 375 ~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 375 QLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp EECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred CceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 12345666655 557998884456689999999888754
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=268.96 Aligned_cols=299 Identities=18% Similarity=0.139 Sum_probs=218.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc--ch----hh-------hcCCCceEEEEcccCCcc---
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD--NL----KK-------WIGHPRFELIRHDVTEPL--- 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~----~~-------~~~~~~~~~~~~d~~~~~--- 91 (343)
..|+|||||||||||++|+++|.+.| ++|++++|....... .+ .. .....+++++.+|+.++.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 35899999999999999999999889 999999996431100 00 00 011358999999999853
Q ss_pred -cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC-----CCCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-----PLIHPQPETYWGNVN 165 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~-----~~~~~~~e~~~~~~~ 165 (343)
..++|+|||||+... ...++...++.|+.++.+++++|.+.+.+|||+||.++ |. ....+++|+++..
T Consensus 228 ~~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~-- 301 (508)
T 4f6l_B 228 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK-- 301 (508)
T ss_dssp CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS--
T ss_pred CccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCcccccccccc--
Confidence 347999999998653 33455677899999999999999994449999999999 43 2344566764311
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-----CccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-----DGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+.+.|+.+|+.+|++++.+.. .|++++|+||++|||+..... ....+..++.....++.++. +.++..++
T Consensus 302 ~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~ 379 (508)
T 4f6l_B 302 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVD 379 (508)
T ss_dssp SBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEE
T ss_pred cccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEE
Confidence 133668899999999999999754 699999999999999975432 12357778888887776654 34678999
Q ss_pred eeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC------------------CCCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT------------------PDDPR 301 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------~~~~~ 301 (343)
++|++|+|++++.++..+. +++||+++++.+++.|+++.+.+.. .+....+.+ .....
T Consensus 380 ~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~ 456 (508)
T 4f6l_B 380 FSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQKQDMYETIGLTSVDREQQ 456 (508)
T ss_dssp CEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSE
T ss_pred EEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHhcCCccchhcccccccCc
Confidence 9999999999999999875 7899999999999999999999754 111110000 00111
Q ss_pred ccccChHHHH---HhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 302 QRKPDISKAK---ELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 302 ~~~~~~~~~~---~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
...+|.++.. +.+||.+....++.++.+++|+.+..+
T Consensus 457 ~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 457 LAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp ECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 2345666554 457998885568889999999888754
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=261.91 Aligned_cols=252 Identities=19% Similarity=0.177 Sum_probs=196.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc---CCCeEEEEecCCCCCc--cchhhhcC--------------CCceEEEEccc
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVADNYFTGSK--DNLKKWIG--------------HPRFELIRHDV 87 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~~~~~--~~~~~~~~--------------~~~~~~~~~d~ 87 (343)
..+|+|||||||||||++|+++|+++ | ++|++++|...... ..+...+. ..+++++.+|+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 46799999999999999999999999 8 99999999643211 11111111 25899999999
Q ss_pred CCccc-----------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCC
Q 019309 88 TEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 88 ~~~~~-----------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~ 155 (343)
.++.+ .++|+||||||.... .++...++.|+.++.+++++|.+.++ +|||+||.++|+.....+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 86542 269999999997653 45556789999999999999999998 999999999999877777
Q ss_pred CCCCCCCCCCCCCCC-----------CchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCC---CCccHHHHHHH
Q 019309 156 QPETYWGNVNPIGVR-----------SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI---DDGRVVSNFIA 221 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~-----------~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~---~~~~~~~~~~~ 221 (343)
+.|+. +..+. +.|+.+|+.+|.+++.+..+.|++++++||++|||+.... ....++..++.
T Consensus 226 ~~E~~-----~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~ 300 (478)
T 4dqv_A 226 FTEDA-----DIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVL 300 (478)
T ss_dssp CCSSS-----CHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHH
T ss_pred cCCcc-----cccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHH
Confidence 88873 33222 3499999999999999988889999999999999985411 12456777766
Q ss_pred HHHcCCCeEEe--cC------CceeEeeeehHHHHHHHHHHHhc----CC--CcceEecCCCc--cCHHHHHHHHHHHhC
Q 019309 222 QALRGEPLTVQ--KP------GTQTRSFCYVSDMVDGLIRLMEG----EN--TGPVNIGNPGE--FTMLELAETVKELIN 285 (343)
Q Consensus 222 ~~~~~~~~~~~--~~------~~~~~~~v~v~D~a~~i~~~~~~----~~--~~~~~~~~~~~--~s~~e~~~~i~~~~g 285 (343)
.....+..+.. .. +...+++||++|+|++++.++.. +. +++||+++++. +|+.|+++.+.+. |
T Consensus 301 ~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~-g 379 (478)
T 4dqv_A 301 SLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA-G 379 (478)
T ss_dssp HHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT-T
T ss_pred HHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc-C
Confidence 66654433321 11 15678999999999999999975 22 56999999988 9999999999996 6
Q ss_pred CCcc
Q 019309 286 PGIE 289 (343)
Q Consensus 286 ~~~~ 289 (343)
.+..
T Consensus 380 ~~~~ 383 (478)
T 4dqv_A 380 YPIR 383 (478)
T ss_dssp CSCE
T ss_pred CCcc
Confidence 5543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=242.15 Aligned_cols=252 Identities=14% Similarity=0.172 Sum_probs=194.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
|+|||||||||||+++++.|+++ | ++|++++|...... .+. ..+++++.+|+.|+ .+.++|+|||+|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-~l~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 74 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKAS-TLA----DQGVEVRHGDYNQPESLQKAFAGVSKLLFIS 74 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTTH-HHH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHHh-HHh----hcCCeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence 67999999999999999999999 8 99999999543211 111 24688999999986 345899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
+... . . +.|+.++.+++++|++.++ ||||+||.++|. .+ .+|+.+|..+|
T Consensus 75 ~~~~------~--~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~~K~~~E 125 (287)
T 2jl1_A 75 GPHY------D--N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEE---------------SI----IPLAHVHLATE 125 (287)
T ss_dssp CCCS------C--H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG---------------CC----STHHHHHHHHH
T ss_pred CCCc------C--c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------CC----CchHHHHHHHH
Confidence 8521 1 1 5799999999999999998 999999998862 11 35999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-- 259 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-- 259 (343)
++++ +.+++++++||+.++|+.. ..++ ......+... ...++..++++|++|+|++++.+++.+.
T Consensus 126 ~~~~----~~~~~~~ilrp~~~~~~~~----~~~~----~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~ 192 (287)
T 2jl1_A 126 YAIR----TTNIPYTFLRNALYTDFFV----NEGL----RASTESGAIV-TNAGSGIVNSVTRNELALAAATVLTEEGHE 192 (287)
T ss_dssp HHHH----HTTCCEEEEEECCBHHHHS----SGGG----HHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHTSSSCT
T ss_pred HHHH----HcCCCeEEEECCEeccccc----hhhH----HHHhhCCcee-ccCCCCccCccCHHHHHHHHHHHhcCCCCC
Confidence 9885 3689999999999888641 1122 2222223333 3456778899999999999999998754
Q ss_pred CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC--------CCC----------------CccccChHHHHHhcC
Q 019309 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP--------DDP----------------RQRKPDISKAKELLG 315 (343)
Q Consensus 260 ~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~~~~~~~~~lg 315 (343)
++.||+++++.+|+.|+++.+.+.+|.+.++...+... ..+ .....|.+++++.||
T Consensus 193 g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 272 (287)
T 2jl1_A 193 NKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIG 272 (287)
T ss_dssp TEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS
T ss_pred CcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhC
Confidence 55999999999999999999999999887665544210 001 224567889999999
Q ss_pred CcccccHHhHHHHHHH
Q 019309 316 WEPKVKLRDGLPLMEE 331 (343)
Q Consensus 316 ~~p~~~~~e~l~~~~~ 331 (343)
|.++++|+++++++
T Consensus 273 --~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 273 --SLTPLKETVKQALK 286 (287)
T ss_dssp --SCCCHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHhc
Confidence 55699999998875
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=243.89 Aligned_cols=230 Identities=22% Similarity=0.295 Sum_probs=188.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
+.+|+||||||||+||++|++.|+++ | + +|++++|.... ...+...+...+++++.+|+.|.. +.++|+||
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 96 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTN-AKKIIVYSRDELK-QSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI 96 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCC-CSEEEEEESCHHH-HHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCC-CCEEEEEECChhh-HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence 46799999999999999999999999 9 6 99999985321 111222233358999999999863 45899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
|+||.........++...++.|+.++.+++++|.+.++ +||++||..++ .|.+.|+.+|.
T Consensus 97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~-------------------~p~~~Y~~sK~ 157 (344)
T 2gn4_A 97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA-------------------NPINLYGATKL 157 (344)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS-------------------SCCSHHHHHHH
T ss_pred ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC-------------------CCccHHHHHHH
Confidence 99997654445567788999999999999999999998 99999998654 23467999999
Q ss_pred HHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 179 VAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 179 ~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
.+|.+++.+..+ .+++++++||++|||+. ++.+..++..+..++ ++.+. ++...++++|++|+|++++.+
T Consensus 158 ~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~-----~~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~ 231 (344)
T 2gn4_A 158 CSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKS 231 (344)
T ss_dssp HHHHHHHHGGGCCCSSCCEEEEECCCEETTCT-----TSHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeccEECCC-----CCHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHH
Confidence 999999988753 57999999999999986 356777888888887 77764 667788999999999999999
Q ss_pred HhcCC-CcceEecCCCccCHHHHHHHHHHHh
Q 019309 255 MEGEN-TGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
++... +++|++.++ .+++.|+++.+.+.+
T Consensus 232 l~~~~~g~~~~~~~~-~~s~~el~~~i~~~~ 261 (344)
T 2gn4_A 232 LKRMHGGEIFVPKIP-SMKMTDLAKALAPNT 261 (344)
T ss_dssp HHHCCSSCEEEECCC-EEEHHHHHHHHCTTC
T ss_pred HhhccCCCEEecCCC-cEEHHHHHHHHHHhC
Confidence 99876 458887665 699999999998654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=243.09 Aligned_cols=252 Identities=15% Similarity=0.170 Sum_probs=189.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLAC 103 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~ 103 (343)
+|||||||||||+++++.|+++ | ++|++++|...... .+. ..+++++.+|+.|+ .+.++|+|||+|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-~~~----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQ-ALA----AQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTCH-HHH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhhh-hhh----cCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5899999999999999999999 8 99999998643221 111 14688999999986 3458999999997
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
... ..|+.++.+++++|++.++ ||||+||.++|. .+ .+|+.+|..+|+
T Consensus 75 ~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~sK~~~e~ 123 (286)
T 2zcu_A 75 SEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT---------------SP----LGLADEHIETEK 123 (286)
T ss_dssp -------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT---------------CC----STTHHHHHHHHH
T ss_pred CCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------Cc----chhHHHHHHHHH
Confidence 421 2478899999999999998 899999998862 11 369999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--C
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--T 260 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~ 260 (343)
+++. .+++++++||+.++++.. .++.....++.+. .+.++..++++|++|+|++++.+++.+. +
T Consensus 124 ~~~~----~~~~~~ilrp~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g 189 (286)
T 2zcu_A 124 MLAD----SGIVYTLLRNGWYSENYL---------ASAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVISEAGHEG 189 (286)
T ss_dssp HHHH----HCSEEEEEEECCBHHHHH---------TTHHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHHSSSCTT
T ss_pred HHHH----cCCCeEEEeChHHhhhhH---------HHhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHhcCCCCCC
Confidence 8864 589999999987766421 1222333334444 4566788999999999999999998754 5
Q ss_pred cceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCC--------CCC----------------CccccChHHHHHhcCC
Q 019309 261 GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTP--------DDP----------------RQRKPDISKAKELLGW 316 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~~~~~~~~~lg~ 316 (343)
+.||+++++.+|+.|+++.+.+.+|.+.++...+... ..+ .....|.+++++.|||
T Consensus 190 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 269 (286)
T 2zcu_A 190 KVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGH 269 (286)
T ss_dssp CEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTS
T ss_pred ceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCc
Confidence 6999999999999999999999999887665544210 001 1234678899999997
Q ss_pred cccccHHhHHHHHHHHHH
Q 019309 317 EPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 317 ~p~~~~~e~l~~~~~~~~ 334 (343)
.+ ++++|+|+++++||.
T Consensus 270 ~~-~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 270 PT-TTLAESVSHLFNVNN 286 (286)
T ss_dssp CC-CCHHHHHHGGGC---
T ss_pred CC-CCHHHHHHHHHhhcC
Confidence 55 599999999998873
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=257.80 Aligned_cols=247 Identities=22% Similarity=0.307 Sum_probs=196.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
|+|||||||||||++|+++|+++| + +|++++|. ...+.+.. .+.++|+|||+|+....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g-~~~v~~~d~~--~d~~~l~~-----------------~~~~~d~Vih~a~~~~~- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTT-DHHIFEVHRQ--TKEEELES-----------------ALLKADFIVHLAGVNRP- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEECCTT--CCHHHHHH-----------------HHHHCSEEEECCCSBCT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCEEEEECCC--CCHHHHHH-----------------HhccCCEEEECCcCCCC-
Confidence 789999999999999999999999 7 99998873 11111111 22368999999986542
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHH
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD 186 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~ 186 (343)
.++...++.|+.++.+++++|++.++ +|||+||.++|+ .++|+.+|..+|++++.
T Consensus 60 ---~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~ 116 (369)
T 3st7_A 60 ---EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLRE 116 (369)
T ss_dssp ---TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHH
Confidence 34555678899999999999999986 799999999985 25799999999999999
Q ss_pred HHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Ccce
Q 019309 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPV 263 (343)
Q Consensus 187 ~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~ 263 (343)
+.++.+++++++||+++||++..+....++..++..+..+..+.+ .+++..++++|++|+|++++.+++.+. ++.|
T Consensus 117 ~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~ 195 (369)
T 3st7_A 117 YAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVP 195 (369)
T ss_dssp HHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEE
T ss_pred HHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceE
Confidence 999889999999999999998766556788999999999888776 467889999999999999999999876 4699
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHH
Q 019309 264 NIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLP 327 (343)
Q Consensus 264 ~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~ 327 (343)
|+++++.+|+.|+++.+.+.+|.+..+...+. ............++|.|..++++.+.
T Consensus 196 ~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~------~~~~~~~l~~~~l~~~p~~~~~~~l~ 253 (369)
T 3st7_A 196 TVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL------DNLFEKDLYSTYLSYLPSTDFSYPLL 253 (369)
T ss_dssp CCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT------TSHHHHHHHHHHHHTSCTTCSCCCCC
T ss_pred EeCCCCceeHHHHHHHHHHHhCCCcccccCCC------CCHHHHHHHHHHhcccCCcceeechh
Confidence 99999999999999999999986544322111 01112233445588888766665443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=235.80 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=166.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
++|+|||||||||||++|+++|+++| ++|++++|..... ... ..+++++.+|+.|.. +.++|+|||+|
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKI----KIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGC----CCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccc----hhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 34899999999999999999999999 9999999953221 111 158999999999863 45899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|... .+ ...++.|+.++.+++++|++.++ ||||+||.++|+...+.. .|+ .+..|.+.|+.+|..+|
T Consensus 76 ~~~~-----~~-~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y~~sK~~~e 143 (227)
T 3dhn_A 76 NPGW-----NN-PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENILPGVKALGE 143 (227)
T ss_dssp CC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGHHHHHHHHH
T ss_pred cCCC-----CC-hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHHHHHHHHHH
Confidence 7542 11 22668899999999999999998 999999999876433222 233 46667789999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-- 259 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-- 259 (343)
.+++.+..+.+++++++||+++|||+..... ...+....+. .+.. ++++|++|+|++++.+++++.
T Consensus 144 ~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~----------~~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~~~~~~ 211 (227)
T 3dhn_A 144 FYLNFLMKEKEIDWVFFSPAADMRPGVRTGR----------YRLGKDDMIV-DIVG-NSHISVEDYAAAMIDELEHPKHH 211 (227)
T ss_dssp HHHHTGGGCCSSEEEEEECCSEEESCCCCCC----------CEEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhccCccEEEEeCCcccCCCccccc----------eeecCCCccc-CCCC-CcEEeHHHHHHHHHHHHhCcccc
Confidence 9998888777999999999999999754321 1122323322 2222 789999999999999999887
Q ss_pred CcceEecCCCccCHHH
Q 019309 260 TGPVNIGNPGEFTMLE 275 (343)
Q Consensus 260 ~~~~~~~~~~~~s~~e 275 (343)
+++|+++++++.++.+
T Consensus 212 g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 212 QERFTIGYLEHHHHHH 227 (227)
T ss_dssp SEEEEEECCSCCC---
T ss_pred CcEEEEEeehhcccCC
Confidence 6799999999988763
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=236.01 Aligned_cols=228 Identities=22% Similarity=0.246 Sum_probs=184.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 103 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a~ 103 (343)
+|+||||||+||||++|+++|+++| ++|++++|..... . ..+++++.+|+.|+. +.++|+|||+||
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 72 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA---A-----EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG 72 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC---C-----CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc---c-----CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence 4689999999999999999999999 9999999864321 1 136788999999863 457999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
.. ...+....++.|+.++.++++++++.++ ||||+||..+|+.. ...+++|+ ++..|.+.|+.+|..+|
T Consensus 73 ~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 143 (267)
T 3ay3_A 73 VS----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSKCFGE 143 (267)
T ss_dssp CC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred CC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHH
Confidence 64 2345677889999999999999999988 99999999999864 34577887 56777889999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-- 259 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-- 259 (343)
.+++.+..+.+++++++||+++|+.. . .+....+++|++|+|++++.+++.+.
T Consensus 144 ~~~~~~~~~~gi~~~~lrp~~v~~~~---~----------------------~~~~~~~~~~~~dva~~~~~~~~~~~~~ 198 (267)
T 3ay3_A 144 DLASLYYHKFDIETLNIRIGSCFPKP---K----------------------DARMMATWLSVDDFMRLMKRAFVAPKLG 198 (267)
T ss_dssp HHHHHHHHTTCCCEEEEEECBCSSSC---C----------------------SHHHHHHBCCHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHcCCCEEEEeceeecCCC---C----------------------CCCeeeccccHHHHHHHHHHHHhCCCCC
Confidence 99999888889999999999999531 0 11234578999999999999999765
Q ss_pred CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHH
Q 019309 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEE 331 (343)
Q Consensus 260 ~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~ 331 (343)
.++|++.++. .....|..++ +.|||+|+++++++++.+.+
T Consensus 199 ~~~~~~~~~~-------------------------------~~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 199 CTVVYGASAN-------------------------------TESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp EEEEEECCSC-------------------------------SSCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred ceeEecCCCc-------------------------------cccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 3467765432 1234577777 78999999999999988865
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=242.63 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=194.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh--hhcCCCceEEEEcccCCcc-----cC--CCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDVTEPL-----LI--EVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~-----~~--~~d~ 97 (343)
|.+|+|||||||||||++|++.|+++| ++|++++|.......... ..+...+++++.+|+.|.. +. ++|+
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 86 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDI 86 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence 446899999999999999999999999 999999996533222222 1122358999999999863 34 8999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
|||+++.. |+.++.+++++|++.+ + +||+ | +||. ..+|+ .+..|...|+.
T Consensus 87 Vi~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~-----~~~~p~~~y~~ 138 (346)
T 3i6i_A 87 VVSTVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRA-----DPVEPGLNMYR 138 (346)
T ss_dssp EEECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTC-----CCCTTHHHHHH
T ss_pred EEECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCcc-----CcCCCcchHHH
Confidence 99999742 7777899999999999 8 6664 4 3442 23444 46667788999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+|..+|++++. .|++++++||++++|..... +.. .......++.+.++++++..++++|++|+|++++.++
T Consensus 139 sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~----~~~-~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l 209 (346)
T 3i6i_A 139 EKRRVRQLVEE----SGIPFTYICCNSIASWPYYN----NIH-PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTV 209 (346)
T ss_dssp HHHHHHHHHHH----TTCCBEEEECCEESSCCCSC----C------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----cCCCEEEEEecccccccCcc----ccc-cccccCCCceEEEccCCCceEEecCHHHHHHHHHHHH
Confidence 99999998864 58999999999999975321 111 1112225667888888989999999999999999999
Q ss_pred hcCC--CcceEecC-CCccCHHHHHHHHHHHhCCCcceEEccCCCC--------CCC---------------ccccCh--
Q 019309 256 EGEN--TGPVNIGN-PGEFTMLELAETVKELINPGIEIKMVENTPD--------DPR---------------QRKPDI-- 307 (343)
Q Consensus 256 ~~~~--~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------~~~---------------~~~~~~-- 307 (343)
+.+. ++.|++++ ++.+|+.|+++.+.+.+|.+.++...+.... .+. ...++.
T Consensus 210 ~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~ 289 (346)
T 3i6i_A 210 DDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDG 289 (346)
T ss_dssp TCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCCS
T ss_pred hCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccCC
Confidence 9765 66888885 5899999999999999999877765432100 000 000111
Q ss_pred ---HHHHHh-cCCcccccHHhHHHHHHHHHHHhhCCCC
Q 019309 308 ---SKAKEL-LGWEPKVKLRDGLPLMEEDFRSRLGVPK 341 (343)
Q Consensus 308 ---~~~~~~-lg~~p~~~~~e~l~~~~~~~~~~~~~~~ 341 (343)
.++.+. -+++++ +++|.++++++|++++...++
T Consensus 290 ~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~~ 326 (346)
T 3i6i_A 290 PEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTAD 326 (346)
T ss_dssp TTEEEHHHHSTTCCCC-CHHHHHHHHHCC---------
T ss_pred CCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccccc
Confidence 123332 367676 899999999999988765443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=223.91 Aligned_cols=213 Identities=15% Similarity=0.207 Sum_probs=165.3
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCce-EEEEcccCC---cccCCCCEEE
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRF-ELIRHDVTE---PLLIEVDQIY 99 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~~~~d~vi 99 (343)
...+++|+||||||||+||++++++|+++| ++|++++|... ..... ...++ +++.+|+.+ ..+.++|+||
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~----~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~D~vi 89 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEE----QGPEL-RERGASDIVVANLEEDFSHAFASIDAVV 89 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGG----GHHHH-HHTTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChH----HHHHH-HhCCCceEEEcccHHHHHHHHcCCCEEE
Confidence 344578999999999999999999999999 99999998532 22221 12378 999999972 2455899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
|+||... ..++...++.|+.++.+++++|++.++ |||++||...+.. +. .+ .+...|+.+|.
T Consensus 90 ~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y~~sK~ 152 (236)
T 3e8x_A 90 FAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHYLVAKR 152 (236)
T ss_dssp ECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHHHHHHH
T ss_pred ECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhHHHHHH
Confidence 9998653 356788899999999999999999998 9999999654421 11 12 45578999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+|.+++ +.+++++++||++++|+... +.+..........++++++|+|++++.+++.+
T Consensus 153 ~~e~~~~----~~gi~~~~lrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~ 211 (236)
T 3e8x_A 153 LADDELK----RSSLDYTIVRPGPLSNEEST-----------------GKVTVSPHFSEITRSITRHDVAKVIAELVDQQ 211 (236)
T ss_dssp HHHHHHH----HSSSEEEEEEECSEECSCCC-----------------SEEEEESSCSCCCCCEEHHHHHHHHHHHTTCG
T ss_pred HHHHHHH----HCCCCEEEEeCCcccCCCCC-----------------CeEEeccCCCcccCcEeHHHHHHHHHHHhcCc
Confidence 9999886 56999999999999998521 12333344555688999999999999999987
Q ss_pred C--CcceEecCCCccCHHHHHHHHH
Q 019309 259 N--TGPVNIGNPGEFTMLELAETVK 281 (343)
Q Consensus 259 ~--~~~~~~~~~~~~s~~e~~~~i~ 281 (343)
. ++.|+++++ .+++.|+++.+.
T Consensus 212 ~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 212 HTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp GGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred cccCCeEEEeCC-CcCHHHHHHHhc
Confidence 4 668999887 699999998765
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=224.38 Aligned_cols=206 Identities=19% Similarity=0.195 Sum_probs=171.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
++|+||||||+|+||++|++.|.++| ++|++++|...... ..+++++.+|+.|.. +.++|+|||||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A 72 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLG 72 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence 45789999999999999999999999 99999998643221 357899999999873 44799999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
|.. ...+....++.|+.++.+++++|++.++ |||++||..+|+.. ...+++|+ .+..+.+.|+.+|..+
T Consensus 73 g~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~~~ 143 (267)
T 3rft_A 73 GIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSKCFG 143 (267)
T ss_dssp SCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred CCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHH
Confidence 863 3456678899999999999999999998 99999999999743 44566776 5777888999999999
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~- 259 (343)
|.+++.++.+++++++++||+.|||+.. ++....++++++|+++++..+++.+.
T Consensus 144 e~~~~~~a~~~g~~~~~vr~~~v~~~~~-------------------------~~~~~~~~~~~~d~a~~~~~~~~~~~~ 198 (267)
T 3rft_A 144 ENLARMYFDKFGQETALVRIGSCTPEPN-------------------------NYRMLSTWFSHDDFVSLIEAVFRAPVL 198 (267)
T ss_dssp HHHHHHHHHHHCCCEEEEEECBCSSSCC-------------------------STTHHHHBCCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhCCeEEEEEeecccCCCC-------------------------CCCceeeEEcHHHHHHHHHHHHhCCCC
Confidence 9999999988999999999999998731 23344568999999999999999876
Q ss_pred -CcceEecCCCccCHHHH
Q 019309 260 -TGPVNIGNPGEFTMLEL 276 (343)
Q Consensus 260 -~~~~~~~~~~~~s~~e~ 276 (343)
..++++++++..++.++
T Consensus 199 ~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 199 GCPVVWGASANDAGWWDN 216 (267)
T ss_dssp CSCEEEECCCCTTCCBCC
T ss_pred CceEEEEeCCCCCCcccC
Confidence 34788888776665544
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=221.85 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=180.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a~ 103 (343)
|+|||||||||||+++++.|.+. | ++|++++|+.... ..+ ...+++++.+|+.|+ .+.++|+|||+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~----~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKV----PDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGS----CGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHH----HHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 68999999999999999999998 7 9999999954321 111 235899999999986 3568999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
.... ...|+.++.+++++|++.++ ||||+||.+.. +. .+. .+...+..+|+
T Consensus 75 ~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~---------~~-----~~~----~~~~~~~~~e~ 126 (289)
T 3e48_A 75 IIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQ---------HN-----NPF----HMSPYFGYASR 126 (289)
T ss_dssp CCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCS---------TT-----CCS----TTHHHHHHHHH
T ss_pred CCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCC---------CC-----CCC----ccchhHHHHHH
Confidence 5432 13488999999999999998 89999995321 11 111 12222334444
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--C
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--T 260 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~ 260 (343)
.+ .+.|++++++||+++||+. ..++......+. ...+.++..+++++++|+|++++.+++.+. +
T Consensus 127 ~~----~~~g~~~~ilrp~~~~~~~---------~~~~~~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g 192 (289)
T 3e48_A 127 LL----STSGIDYTYVRMAMYMDPL---------KPYLPELMNMHK-LIYPAGDGRINYITRNDIARGVIAIIKNPDTWG 192 (289)
T ss_dssp HH----HHHCCEEEEEEECEESTTH---------HHHHHHHHHHTE-ECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTT
T ss_pred HH----HHcCCCEEEEecccccccc---------HHHHHHHHHCCC-EecCCCCceeeeEEHHHHHHHHHHHHcCCCcCC
Confidence 44 4569999999999999973 122333333332 334567789999999999999999999776 6
Q ss_pred cceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC------C--CCC-------------CccccChHHHHHhcCCccc
Q 019309 261 GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT------P--DDP-------------RQRKPDISKAKELLGWEPK 319 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~--~~~-------------~~~~~~~~~~~~~lg~~p~ 319 (343)
+.|+++ ++.+|+.|+++.+.+.+|.+..+...+.. . ... .........+++.+|+.|+
T Consensus 193 ~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~ 271 (289)
T 3e48_A 193 KRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQ 271 (289)
T ss_dssp CEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCC
T ss_pred ceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhCCCCC
Confidence 699999 99999999999999999987665433211 0 000 0112355677888999888
Q ss_pred ccHHhHHHHH
Q 019309 320 VKLRDGLPLM 329 (343)
Q Consensus 320 ~~~~e~l~~~ 329 (343)
+++|.+++.
T Consensus 272 -~~~~~~~~~ 280 (289)
T 3e48_A 272 -TLQSFLQEN 280 (289)
T ss_dssp -CHHHHHHC-
T ss_pred -CHHHHHHHH
Confidence 888865543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=210.88 Aligned_cols=212 Identities=13% Similarity=0.164 Sum_probs=140.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc---ccCCCCEEEEecCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP---LLIEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~d~vi~~a~~~~ 106 (343)
|+|||||||||||++|++.|+++| ++|++++|.. +....+. .+++++.+|+.|+ .+.++|+|||+||...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~----~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNA----GKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCS----HHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCc----hhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 789999999999999999999999 9999999853 2222222 5799999999987 4568999999998642
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLM 184 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~ 184 (343)
. ....|+.++.+++++|++.++ |+|++||..+|... ...+..|+ .+..|.+.|+.+|...|.+
T Consensus 74 ~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k~~~e~~- 138 (221)
T 3ew7_A 74 D---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTARAQAKQL- 138 (221)
T ss_dssp T---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-
T ss_pred c---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHHHHHHHH-
Confidence 1 135699999999999999987 99999998775443 33344554 4566677899999999986
Q ss_pred HHHHH-HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 185 FDYHR-QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 185 ~~~~~-~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
..+.. ..+++++++||+.+||++... .. + ...+..+.+.+++ .++++++|+|++++.+++++. ++
T Consensus 139 ~~~~~~~~gi~~~ivrp~~v~g~~~~~--~~----~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~~g~ 206 (221)
T 3ew7_A 139 EHLKSHQAEFSWTYISPSAMFEPGERT--GD----Y---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNHLNE 206 (221)
T ss_dssp HHHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHHHHHHHHHHHHHSCSCTTS
T ss_pred HHHHhhccCccEEEEeCcceecCCCcc--Cc----e---EeccccceecCCC---CceEeHHHHHHHHHHHHhCccccCC
Confidence 33333 579999999999999984211 11 1 1122333333322 369999999999999999877 67
Q ss_pred ceEecCCCccCHHH
Q 019309 262 PVNIGNPGEFTMLE 275 (343)
Q Consensus 262 ~~~~~~~~~~s~~e 275 (343)
.|+++++.+.+..|
T Consensus 207 ~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 207 HFTVAGKLEHHHHH 220 (221)
T ss_dssp EEECCC--------
T ss_pred EEEECCCCcccccc
Confidence 99999988777654
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=211.09 Aligned_cols=201 Identities=15% Similarity=0.219 Sum_probs=159.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-c-----ccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-P-----LLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~d~vi~~a~ 103 (343)
|+||||||+||||+++++.|+++| ++|++++|..... .. ..+++++.+|+.| + .+.++|+|||+||
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~----~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQV----PQ---YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGS----CC---CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccch----hh---cCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 689999999999999999999999 9999999954221 11 1589999999999 5 3558999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
.... ..++.|+.++.+++++|++.++ +||++||.++++.. +..| .+..+.+.|+.+|..+|+
T Consensus 73 ~~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK~~~e~ 135 (219)
T 3dqp_A 73 SGGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAKHFADL 135 (219)
T ss_dssp CTTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHHHHHHH
T ss_pred CCCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHHHHHHH
Confidence 6542 1446789999999999999998 99999998877532 2223 133456789999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--C
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--T 260 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~ 260 (343)
+++ ...+++++++||+++||+.... .+.+ +...+++++++|+|++++.+++++. +
T Consensus 136 ~~~---~~~~i~~~ilrp~~v~g~~~~~-----------------~~~~---~~~~~~~i~~~Dva~~i~~~l~~~~~~g 192 (219)
T 3dqp_A 136 YLT---KETNLDYTIIQPGALTEEEATG-----------------LIDI---NDEVSASNTIGDVADTIKELVMTDHSIG 192 (219)
T ss_dssp HHH---HSCCCEEEEEEECSEECSCCCS-----------------EEEE---SSSCCCCEEHHHHHHHHHHHHTCGGGTT
T ss_pred HHH---hccCCcEEEEeCceEecCCCCC-----------------cccc---CCCcCCcccHHHHHHHHHHHHhCccccC
Confidence 986 4569999999999999985311 1111 2467889999999999999999865 5
Q ss_pred cceEecCCCccCHHHHHHH
Q 019309 261 GPVNIGNPGEFTMLELAET 279 (343)
Q Consensus 261 ~~~~~~~~~~~s~~e~~~~ 279 (343)
+.|+++++ ..++.|+++.
T Consensus 193 ~~~~i~~g-~~~~~e~~~~ 210 (219)
T 3dqp_A 193 KVISMHNG-KTAIKEALES 210 (219)
T ss_dssp EEEEEEEC-SEEHHHHHHT
T ss_pred cEEEeCCC-CccHHHHHHH
Confidence 68999876 4999988764
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=220.28 Aligned_cols=263 Identities=15% Similarity=0.121 Sum_probs=184.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
++|+||||||||+||+++++.|+++|.++|++++|+..... .. .+...+++++.+|+.|+ .+.++|+|||++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~--~~-~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA--AK-ELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH--HH-HHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH--HH-HHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 46899999999999999999999987589999999643211 11 11124789999999986 345899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
+.... . ..+.|+.++.+++++|++.++ +||++|+..+|+.. +. .+..+|+.+|..+|
T Consensus 81 ~~~~~----~----~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~------~~--------~~~~~y~~sK~~~e 138 (299)
T 2wm3_A 81 NYWES----C----SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT------AG--------RLAAAHFDGKGEVE 138 (299)
T ss_dssp CHHHH----T----CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHT------TT--------SCCCHHHHHHHHHH
T ss_pred CCCcc----c----cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccC------CC--------cccCchhhHHHHHH
Confidence 63210 0 135678899999999999998 89998888777521 11 12357999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHH-HcCCCeEE-ecCCceeEeeeehHHHHHHHHHHHhcC-
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQA-LRGEPLTV-QKPGTQTRSFCYVSDMVDGLIRLMEGE- 258 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~v~v~D~a~~i~~~~~~~- 258 (343)
++++. .|++++++||+++||+.... ++... ..++...+ ...++..++++|++|+|++++.+++.+
T Consensus 139 ~~~~~----~gi~~~ilrp~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (299)
T 2wm3_A 139 EYFRD----IGVPMTSVRLPCYFENLLSH--------FLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPE 206 (299)
T ss_dssp HHHHH----HTCCEEEEECCEEGGGGGTT--------TCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHH
T ss_pred HHHHH----CCCCEEEEeecHHhhhchhh--------cCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChh
Confidence 98864 48999999999999974210 11111 12322222 223667899999999999999999864
Q ss_pred --CCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC----CCC------------ccccChHHHHHhcCCcccc
Q 019309 259 --NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD----DPR------------QRKPDISKAKELLGWEPKV 320 (343)
Q Consensus 259 --~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~lg~~p~~ 320 (343)
.++.|++++ +.+|+.|+++.+.+.+|.+..+...+.... .+. ..........+.+|..|+
T Consensus 207 ~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 284 (299)
T 2wm3_A 207 KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNPKAL- 284 (299)
T ss_dssp HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCCCCHHHHHHHCTTCC-
T ss_pred hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC-
Confidence 256899886 689999999999999998765443332110 000 000112234556787665
Q ss_pred cHHhHHHHH
Q 019309 321 KLRDGLPLM 329 (343)
Q Consensus 321 ~~~e~l~~~ 329 (343)
+++|.+++.
T Consensus 285 ~~~~~~~~~ 293 (299)
T 2wm3_A 285 TLDQWLEQH 293 (299)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHhC
Confidence 888876654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=207.03 Aligned_cols=213 Identities=11% Similarity=0.019 Sum_probs=154.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc---cCCCCEEEEecCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~d~vi~~a~~~~ 106 (343)
|+|||||||||||++|+++|+++| ++|++++|.. .....+ ...+++++.+|+.|+. +.++|+|||+||...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~----~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 74 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDP----QKAADR-LGATVATLVKEPLVLTEADLDSVDAVVDALSVPW 74 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHH-TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecc----cccccc-cCCCceEEecccccccHhhcccCCEEEECCccCC
Confidence 789999999999999999999999 9999999842 222222 2358999999999873 568999999998651
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCC---CCCCCCCCCCCCCCCCCchHHhHHHHHHH
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIH---PQPETYWGNVNPIGVRSCYDEGKRVAETL 183 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~---~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~ 183 (343)
. .. ....|+.++.+++++|++.+.|||++||.++++..... +.+|. ....|.+.|+.+|..+|.
T Consensus 75 ~---~~----~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~sK~~~e~- 141 (224)
T 3h2s_A 75 G---SG----RGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWYDGALYQYYE- 141 (224)
T ss_dssp T---SS----CTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTHHHHHHHHHH-
T ss_pred C---cc----hhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhhHHHHHHHHH-
Confidence 1 11 13679999999999999998899999998765433221 22222 233346789999999994
Q ss_pred HHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--Cc
Q 019309 184 MFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TG 261 (343)
Q Consensus 184 ~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~ 261 (343)
+..+.++.+++++++||+.+||++.... +. .....+. .+....++++++|+|++++.+++++. ++
T Consensus 142 ~~~~~~~~~i~~~ivrp~~v~g~~~~~~---~~-------~~~~~~~---~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~ 208 (224)
T 3h2s_A 142 YQFLQMNANVNWIGISPSEAFPSGPATS---YV-------AGKDTLL---VGEDGQSHITTGNMALAILDQLEHPTAIRD 208 (224)
T ss_dssp HHHHTTCTTSCEEEEEECSBCCCCCCCC---EE-------EESSBCC---CCTTSCCBCCHHHHHHHHHHHHHSCCCTTS
T ss_pred HHHHHhcCCCcEEEEcCccccCCCcccC---ce-------ecccccc---cCCCCCceEeHHHHHHHHHHHhcCccccCC
Confidence 4455556799999999999999853211 00 1111111 12344689999999999999999876 67
Q ss_pred ceEecCCCccCHH
Q 019309 262 PVNIGNPGEFTML 274 (343)
Q Consensus 262 ~~~~~~~~~~s~~ 274 (343)
+|++++.+..++.
T Consensus 209 ~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 209 RIVVRDADLEHHH 221 (224)
T ss_dssp EEEEEECC-----
T ss_pred EEEEecCcchhcc
Confidence 9999987766554
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=209.12 Aligned_cols=202 Identities=20% Similarity=0.198 Sum_probs=158.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCC---CCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIE---VDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~d~vi~~a 102 (343)
|+|+||||||+|+||+++++.|+++| + +|++++|.... ...+++++.+|+.++.... +|+|||++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g-~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a 73 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEP-TLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCL 73 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCT-TCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCC-CCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECe
Confidence 67899999999999999999999999 6 99999986432 1247888899998753221 89999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|... ....++...++.|+.++.+++++|++.++ +||++||..+|+. +.+.|+.+|..+|
T Consensus 74 ~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e 133 (215)
T 2a35_A 74 GTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELE 133 (215)
T ss_dssp CCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHH
T ss_pred eecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHH
Confidence 8543 23457778899999999999999999998 8999999998852 2357999999999
Q ss_pred HHHHHHHHHhCCc-eEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCC
Q 019309 182 TLMFDYHRQHGIQ-IRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260 (343)
Q Consensus 182 ~~~~~~~~~~~~~-~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~ 260 (343)
++++. .+++ ++++||+.+||+... ..++..+ . +...++ .+ ..++++|++|+|++++.+++++.+
T Consensus 134 ~~~~~----~~~~~~~~vrp~~v~g~~~~---~~~~~~~----~-~~~~~~-~~--~~~~~i~~~Dva~~~~~~~~~~~~ 198 (215)
T 2a35_A 134 QALQE----QGWPQLTIARPSLLFGPREE---FRLAEIL----A-APIARI-LP--GKYHGIEACDLARALWRLALEEGK 198 (215)
T ss_dssp HHHTT----SCCSEEEEEECCSEESTTSC---EEGGGGT----T-CCCC-------CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHH----cCCCeEEEEeCceeeCCCCc---chHHHHH----H-Hhhhhc-cC--CCcCcEeHHHHHHHHHHHHhcCCC
Confidence 98865 4899 999999999999743 1222111 1 222222 22 267899999999999999998888
Q ss_pred cceEecCCCccCHH
Q 019309 261 GPVNIGNPGEFTML 274 (343)
Q Consensus 261 ~~~~~~~~~~~s~~ 274 (343)
+.||+++++.+++.
T Consensus 199 ~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 199 GVRFVESDELRKLG 212 (215)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred CceEEcHHHHHHhh
Confidence 89999987766654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=210.34 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=164.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
+++|+||||||+|+||++++++|+++ | ++|++++|.. ...... ..+++++.+|+.|+. +.++|+||
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~----~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi 74 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSA----QGKEKI--GGEADVFIGDITDADSINPAFQGIDALV 74 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCH----HHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCC----Cchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEE
Confidence 46789999999999999999999999 7 9999999842 222222 246788999999863 45799999
Q ss_pred EecCCCCccc-------------cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 100 ~~a~~~~~~~-------------~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|+||...... ...+....++.|+.++.++++++++.++ +||++||.+++.. . .
T Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~-----~ 141 (253)
T 1xq6_A 75 ILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------D-----H 141 (253)
T ss_dssp ECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------T-----C
T ss_pred EeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------C-----C
Confidence 9998653211 1112234678999999999999999998 9999999987521 1 1
Q ss_pred CCCC--CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 166 PIGV--RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 166 ~~~~--~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
+..+ ...|+.+|..+|.+++. .+++++++||+.+||+..... .. ..+....+.. ....+++
T Consensus 142 ~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~--~~--------~~~~~~~~~~---~~~~~~~ 204 (253)
T 1xq6_A 142 PLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR--EL--------LVGKDDELLQ---TDTKTVP 204 (253)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS--CE--------EEESTTGGGG---SSCCEEE
T ss_pred ccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh--hh--------hccCCcCCcC---CCCcEEc
Confidence 1111 13577899999998753 689999999999999863211 00 0011111111 1346899
Q ss_pred hHHHHHHHHHHHhcCC--CcceEecCCC---ccCHHHHHHHHHHHhCC
Q 019309 244 VSDMVDGLIRLMEGEN--TGPVNIGNPG---EFTMLELAETVKELINP 286 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~--~~~~~~~~~~---~~s~~e~~~~i~~~~g~ 286 (343)
++|+|++++.+++.+. ++.||+++++ .+|+.|+++.+.+.+|+
T Consensus 205 ~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 205 RADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999999998764 5589999864 69999999999998875
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-28 Score=214.72 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=168.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcc-cCCcc-----cCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD-VTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~-----~~~~d~vi~~ 101 (343)
.+|+|||||||||||++|++.|+++| ++|++++|..... ....+....+++++.+| +.|+. +.++|+|||+
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~--~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGL--IAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSH--HHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChh--hHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 36899999999999999999999999 9999999854321 11122222478999999 88763 4589999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCc--ccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE--VYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~--v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
++... . ..|..+ .+++++|++.+ + ||||+||.+ .|+. .+..+|+.+|
T Consensus 81 a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------------~~~~~y~~sK 131 (352)
T 1xgk_A 81 TTSQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-----------------WPAVPMWAPK 131 (352)
T ss_dssp CCSTT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------------CCCCTTTHHH
T ss_pred CCCCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------------CCCccHHHHH
Confidence 86421 1 236665 99999999999 8 999999986 3321 1225699999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHH-HcCCCe--EEecCCceeEeeeeh-HHHHHHHHH
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQA-LRGEPL--TVQKPGTQTRSFCYV-SDMVDGLIR 253 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~v~v-~D~a~~i~~ 253 (343)
..+|++++. .+++++++||+ +||+...... ..++... ...+.+ .+.+++++.++++|+ +|+|++++.
T Consensus 132 ~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~ 202 (352)
T 1xgk_A 132 FTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLP----YPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQ 202 (352)
T ss_dssp HHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSS----CSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCEEEEecc-eecCCchhcc----cccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHH
Confidence 999999865 38999999987 6887632110 0011101 122333 335567788999999 899999999
Q ss_pred HHhcC----CCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCC
Q 019309 254 LMEGE----NTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296 (343)
Q Consensus 254 ~~~~~----~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 296 (343)
+++.+ .++.||+++ +.+|+.|+++.+.+.+|.+..+...+..
T Consensus 203 ~l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~ 248 (352)
T 1xgk_A 203 IFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKV 248 (352)
T ss_dssp HHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred HHhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHH
Confidence 99875 367999995 6899999999999999998777666644
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=209.88 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=167.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhh--hcCCCceEEEEcccCCc-----ccCCCCEEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKK--WIGHPRFELIRHDVTEP-----LLIEVDQIYH 100 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~~~~d~~~~-----~~~~~d~vi~ 100 (343)
+|+|||||||||||+++++.|+++| ++|++++|..... ++.... .+...+++++.+|+.|+ .+.++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 5889999999999999999999999 9999999964332 111111 11235799999999986 3458999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHHhH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGK 177 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~~K 177 (343)
+++.... ..|+.++.+++++|++.+ + |||+ | +||...... + .+..| ...| .+|
T Consensus 83 ~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~---~-----~~~~p~~~~y-~sK 138 (313)
T 1qyd_A 83 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM---E-----HALQPGSITF-IDK 138 (313)
T ss_dssp CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC---C-----CCCSSTTHHH-HHH
T ss_pred CCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc---c-----cCCCCCcchH-HHH
Confidence 9985432 125677889999999998 8 7874 3 355322111 1 22233 3457 999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
..+|++++ +.+++++++||+.++|+......... . .....++.+.++++++..++++|++|+|++++.+++.
T Consensus 139 ~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~ 210 (313)
T 1qyd_A 139 RKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQLD-G---HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDD 210 (313)
T ss_dssp HHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSCTT-C---CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHH----hcCCCeEEEEeceecccccccccccc-c---cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhC
Confidence 99999885 45899999999999875321100000 0 0012334455667778899999999999999999987
Q ss_pred CC--CcceEecCC-CccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 258 EN--TGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 258 ~~--~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
+. ++.|++.++ +.+|+.|+++.+.+.+|.+..+...+
T Consensus 211 ~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 211 PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 64 567888765 79999999999999999887655433
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=206.74 Aligned_cols=224 Identities=18% Similarity=0.200 Sum_probs=166.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
|+++||||||||+||++|++.|+++| ++|++++|........+..+ ...+++++.+|+.|+ .+.++|+|||++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a 87 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDEF-QSLGAIIVKGELDEHEKLVELMKKVDVVISAL 87 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHHHHh-hcCCCEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 34589999999999999999999999 99999999653222222111 225789999999986 345899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHHhHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEGKRV 179 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~~K~~ 179 (343)
+... +.++.+++++|++.+ + |||+ | +||... +|. .+..| ...| .+|..
T Consensus 88 ~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~sK~~ 138 (318)
T 2r6j_A 88 AFPQ---------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRI-----NALPPFEALI-ERKRM 138 (318)
T ss_dssp CGGG---------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTC-----CCCHHHHHHH-HHHHH
T ss_pred chhh---------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----ccc-----cCCCCcchhH-HHHHH
Confidence 7431 345678999999998 8 7764 4 344221 222 22223 2458 99999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
+|++++ +.+++++++||+.+++. ++..++.....++.+.++++++..+++++++|+|++++.+++.+.
T Consensus 139 ~e~~~~----~~~~~~~~lr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (318)
T 2r6j_A 139 IRRAIE----EANIPYTYVSANCFASY--------FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPR 206 (318)
T ss_dssp HHHHHH----HTTCCBEEEECCEEHHH--------HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGG
T ss_pred HHHHHH----hcCCCeEEEEcceehhh--------hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCcc
Confidence 998885 35899999999887763 233333333345566777788889999999999999999998764
Q ss_pred --CcceEecC-CCccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 260 --TGPVNIGN-PGEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 260 --~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
++.|++.+ ++.+|+.|+++.+.+.+|.+..+...+
T Consensus 207 ~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 207 ALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp GTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred ccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 56788875 479999999999999999887765443
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=203.94 Aligned_cols=225 Identities=15% Similarity=0.168 Sum_probs=165.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC-CCCc-cchhh--hcCCCceEEEEcccCCc-----ccCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSK-DNLKK--WIGHPRFELIRHDVTEP-----LLIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~-~~~~~--~~~~~~~~~~~~d~~~~-----~~~~~d~v 98 (343)
++|+|+||||||+||++|++.|+++| ++|++++|.. .... ..... .+...+++++.+|+.|+ .+.++|+|
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~v 81 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIV 81 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence 35789999999999999999999999 9999999964 2111 11111 01225789999999986 34589999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDE 175 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~ 175 (343)
||+++... +.++.+++++|++.+ + |||+ | +||... +|. .+..| .+.| .
T Consensus 82 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~ 132 (321)
T 3c1o_A 82 ISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE----DRI-----KPLPPFESVL-E 132 (321)
T ss_dssp EECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG----GGC-----CCCHHHHHHH-H
T ss_pred EECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc----ccc-----ccCCCcchHH-H
Confidence 99997431 445678999999998 8 7772 3 354321 122 22223 3568 9
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHH---HHHcCCCeEEecCCceeEeeeehHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIA---QALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
+|..+|++++ +.+++++++||+.++++. ...+.. ....++.+.++++++..+++++++|+|++++
T Consensus 133 sK~~~e~~~~----~~~~~~~~lrp~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 133 KKRIIRRAIE----AAALPYTYVSANCFGAYF--------VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHHHHHHHHH----HHTCCBEEEECCEEHHHH--------HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----HcCCCeEEEEeceecccc--------ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHH
Confidence 9999999885 358999999999888742 222221 1124556777778888999999999999999
Q ss_pred HHHhcCC--CcceEecC-CCccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 253 RLMEGEN--TGPVNIGN-PGEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 253 ~~~~~~~--~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
.+++.+. ++.|++.+ ++.+|+.|+++.+.+.+|.+..+...+
T Consensus 201 ~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 201 KVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 9998765 45788876 479999999999999999887766543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=205.94 Aligned_cols=227 Identities=16% Similarity=0.211 Sum_probs=165.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--ccchh--hhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--KDNLK--KWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~--~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
+|+|+||||||+||++|++.|+++| ++|++++|..... .+... ..+...+++++.+|+.|+. +.++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 82 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 82 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence 5789999999999999999999999 9999999964332 11111 1112357999999999863 44899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~~ 176 (343)
|+++... +.++.+++++|++.+ + |||+ |+ ||.. ..|. .+..| ...| .+
T Consensus 83 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~----~~~~-----~~~~p~~~~y-~s 133 (308)
T 1qyc_A 83 STVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGND----VDNV-----HAVEPAKSVF-EV 133 (308)
T ss_dssp ECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSC----TTSC-----CCCTTHHHHH-HH
T ss_pred ECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccC----cccc-----ccCCcchhHH-HH
Confidence 9997431 344678999999998 8 7763 43 4421 1222 23333 3468 99
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
|..+|++++. .+++++++||+.++|+....... .......++.+.++++++..++++|++|+|++++.+++
T Consensus 134 K~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 134 KAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQ-----AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTC-----TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHh----cCCCeEEEEeceecccccccccc-----ccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHh
Confidence 9999998853 48999999999998753211000 00011234456777788889999999999999999998
Q ss_pred cCC--CcceEecCC-CccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 257 GEN--TGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 257 ~~~--~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
.+. ++.|++.++ +.+|+.|+++.+.+.+|.+.++...+
T Consensus 205 ~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 205 DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred CccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 754 567888764 78999999999999999887766544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=181.95 Aligned_cols=196 Identities=12% Similarity=0.102 Sum_probs=145.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~a 102 (343)
++|+|+||||||+||++++++|+++| ++|++++|+..... . ....+++++.+|+.|+. +.++|+|||++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~----~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLP----S-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSC----S-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcc----c-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence 34899999999999999999999999 99999998542211 1 11357899999999863 45799999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
+..... ++ .+.|+.++.++++++++.++ +||++||..+|+..... ..+...|+.+|..+|
T Consensus 76 ~~~~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------------~~~~~~y~~~K~~~e 136 (206)
T 1hdo_A 76 GTRNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV------------PPRLQAVTDDHIRMH 136 (206)
T ss_dssp CCTTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS------------CGGGHHHHHHHHHHH
T ss_pred cCCCCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc------------cccchhHHHHHHHHH
Confidence 865421 11 14789999999999999998 89999999998743211 114567999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC--
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-- 259 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-- 259 (343)
.+++ +.+++++++||+.+ ++... ...+ ......... .++++++|+|++++.+++++.
T Consensus 137 ~~~~----~~~i~~~~lrp~~~-~~~~~--~~~~-------------~~~~~~~~~-~~~i~~~Dva~~~~~~~~~~~~~ 195 (206)
T 1hdo_A 137 KVLR----ESGLKYVAVMPPHI-GDQPL--TGAY-------------TVTLDGRGP-SRVISKHDLGHFMLRCLTTDEYD 195 (206)
T ss_dssp HHHH----HTCSEEEEECCSEE-ECCCC--CSCC-------------EEESSSCSS-CSEEEHHHHHHHHHHTTSCSTTT
T ss_pred HHHH----hCCCCEEEEeCCcc-cCCCC--Ccce-------------EecccCCCC-CCccCHHHHHHHHHHHhcCcccc
Confidence 9884 46899999999997 33211 0110 000111000 479999999999999999865
Q ss_pred CcceEecCCC
Q 019309 260 TGPVNIGNPG 269 (343)
Q Consensus 260 ~~~~~~~~~~ 269 (343)
++.|+++++.
T Consensus 196 g~~~~i~~g~ 205 (206)
T 1hdo_A 196 GHSTYPSHQY 205 (206)
T ss_dssp TCEEEEECCC
T ss_pred ccceeeeccc
Confidence 5689998764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=201.78 Aligned_cols=227 Identities=17% Similarity=0.188 Sum_probs=163.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC-CCCc--cchhh--hcCCCceEEEEcccCCc-----ccCCCCEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSK--DNLKK--WIGHPRFELIRHDVTEP-----LLIEVDQI 98 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~--~~~~~--~~~~~~~~~~~~d~~~~-----~~~~~d~v 98 (343)
+|+|+||||||+||++|++.|+++| ++|++++|.. .... +.... .+...+++++.+|+.|+ .+.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 80 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence 5789999999999999999999999 9999999964 1111 11111 11225789999999986 34589999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC-CCchHH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV-RSCYDE 175 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~ 175 (343)
||+++... +.++.+++++|++.+ + |||+ | +||... +|. .+..| .+.| .
T Consensus 81 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~ 131 (307)
T 2gas_A 81 ICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRH-----DAVEPVRQVF-E 131 (307)
T ss_dssp EECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSC-----CCCTTHHHHH-H
T ss_pred EECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccc-----cCCCcchhHH-H
Confidence 99997532 345678999999998 8 7773 3 344221 222 22233 3568 9
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+|..+|++++ +.+++++++||+.++++.... +.. .......++.+.++++++..+++++++|+|++++.++
T Consensus 132 sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l 202 (307)
T 2gas_A 132 EKASIRRVIE----AEGVPYTYLCCHAFTGYFLRN----LAQ-LDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAA 202 (307)
T ss_dssp HHHHHHHHHH----HHTCCBEEEECCEETTTTGGG----TTC-TTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HcCCCeEEEEcceeecccccc----ccc-cccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHH
Confidence 9999999875 358999999999998864211 000 0000123445666777788899999999999999999
Q ss_pred hcCC--CcceEecCC-CccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 256 EGEN--TGPVNIGNP-GEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 256 ~~~~--~~~~~~~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
+.+. ++.|++.++ +.+|+.|+++.+.+.+|.+.++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 203 NDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp TCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred cCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 8765 557888764 68999999999999999887766543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=189.48 Aligned_cols=202 Identities=13% Similarity=0.036 Sum_probs=150.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi 99 (343)
+++|+||||||+|+||++++++|+++| + +|++++|......... ..++.++.+|+.|+. +.++|+||
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi 89 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGF 89 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence 567999999999999999999999999 8 9999999653322111 136888999998763 34799999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
||||.... ..++...++.|+.++.++++++++.++ +||++||.++|+. +...|+.+|.
T Consensus 90 ~~ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~ 148 (242)
T 2bka_A 90 CCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKG 148 (242)
T ss_dssp ECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHH
T ss_pred ECCCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHH
Confidence 99985432 223567889999999999999999988 9999999988752 1256999999
Q ss_pred HHHHHHHHHHHHhCC-ceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 179 VAETLMFDYHRQHGI-QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~-~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
.+|.+++. .++ +++++||+.+||+.... .....+........+. .+ ....+++++|+|++++.++++
T Consensus 149 ~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~---~~~~~~~~~~~~~~~~-~~----~~~~~~~~~dva~~~~~~~~~ 216 (242)
T 2bka_A 149 EVEAKVEE----LKFDRYSVFRPGVLLCDRQES---RPGEWLVRKFFGSLPD-SW----ASGHSVPVVTVVRAMLNNVVR 216 (242)
T ss_dssp HHHHHHHT----TCCSEEEEEECCEEECTTGGG---SHHHHHHHHHHCSCCT-TG----GGGTEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHh----cCCCCeEEEcCceecCCCCCC---cHHHHHHHHhhcccCc-cc----cCCcccCHHHHHHHHHHHHhC
Confidence 99998864 478 59999999999996422 2223333333322111 11 123489999999999999998
Q ss_pred CCC-cceEecC
Q 019309 258 ENT-GPVNIGN 267 (343)
Q Consensus 258 ~~~-~~~~~~~ 267 (343)
+.. +.+++.+
T Consensus 217 ~~~~~~~~~~~ 227 (242)
T 2bka_A 217 PRDKQMELLEN 227 (242)
T ss_dssp CCCSSEEEEEH
T ss_pred ccccCeeEeeH
Confidence 774 5555543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=199.69 Aligned_cols=237 Identities=16% Similarity=0.092 Sum_probs=166.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|+||||||+|+||++++++|+++| ++|++++|......+ +.... ..++.++.+|+.|... .+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRTEALDD-LVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR 79 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH-HHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-HHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999 999999985432222 11212 2478999999998632 26
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHH----HHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~----~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||..... ....+....++.|+.+ +..++..+++.+. +||++||...+.
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 143 (281)
T 3m1a_A 80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL---------------- 143 (281)
T ss_dssp CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------
Confidence 99999999965321 1233456678999999 5555666677777 999999987763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc---cHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG---RVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++....... .....+.........+. ......
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 220 (281)
T 3m1a_A 144 SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV---QGSDGS 220 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH---HC----
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH---hhccCC
Confidence 3445578999999999999999887 68999999999998875332110 00011111111100000 111234
Q ss_pred eeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELIN 285 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g 285 (343)
.+++++|+|++++.+++.+. ++.|+++++....+.+....+.+.++
T Consensus 221 ~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 221 QPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp -CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 57889999999999999877 66889988877777777777777654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=189.77 Aligned_cols=234 Identities=17% Similarity=0.137 Sum_probs=168.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|................++.++.+|+.|+.. .+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999999 99999988532211111111112378999999998632 26
Q ss_pred CCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|+|||+||..... ....+....++.|+.++.++++++.. .+. +||++||..+|...
T Consensus 93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------ 160 (278)
T 2bgk_A 93 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------------ 160 (278)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC------------
T ss_pred CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC------------
Confidence 99999999865321 11234567889999999999988865 355 99999999887521
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
..+...|+.+|...|.+++.++.+ .|+++.++||++++++........ .............. ....
T Consensus 161 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~ 229 (278)
T 2bgk_A 161 ---EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV-DSSRVEELAHQAAN-------LKGT 229 (278)
T ss_dssp ---TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC-CHHHHHHHHHHTCS-------SCSC
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc-chhHHHHhhhcccc-------cccc
Confidence 113457999999999999998876 589999999999999864321110 01122222221111 1234
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHh
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
+++++|+|++++.++.... +..|++.++..+++.|+++.+.+.+
T Consensus 230 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 230 LLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp CCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred cCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 7899999999999996532 4588999999999999999886543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=184.78 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=158.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|+||||||+|+||+++++.|+++| ++|++++|+..........+. ...++.++.+|+.|+.. .
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 567999999999999999999999999 999999985322111111111 12468889999998632 2
Q ss_pred CCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
++|+|||+||...... ...++...++.|+.++.++++++. +.+. +||++||...+.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 151 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------
Confidence 7999999998654321 233456778999999999888874 4566 899999998764
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...|.+++.++.+. ++++.++||+.++++..... ....+......+.++ ..++
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~~~---------~~~~ 219 (255)
T 1fmc_A 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPI---------RRLG 219 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSS---------CSCB
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc---cChHHHHHHHhcCCc---------ccCC
Confidence 23345679999999999999888764 89999999999998742211 112233333333221 2377
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
+++|+|++++.++.... ++.|++.++..+|+
T Consensus 220 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 220 QPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred CHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 89999999999997542 45899999887764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=178.07 Aligned_cols=213 Identities=18% Similarity=0.136 Sum_probs=152.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~v 98 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|..... +..... ..+++++.+|+.+.. ..++|+|
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDL-VSLAKE--CPGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHh--ccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 467899999999999999999999999 9999999853211 111111 135778899999863 2258999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
||+||...... ...+....++.|+.++.++++++... + . +||++||..+|. +..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 144 (244)
T 1cyd_A 81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC----------------CCC
Confidence 99999654222 22344567899999999888887653 4 4 899999998874 223
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
+...|+.+|...|.+++.++.+ .++++.++||+.++++...... ....++..+..+.+ ..++++++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~ 213 (244)
T 1cyd_A 145 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS--ADPEFARKLKERHP---------LRKFAEVE 213 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT--CCHHHHHHHHHHST---------TSSCBCHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc--cCHHHHHHHHhcCC---------ccCCCCHH
Confidence 3467999999999999998877 5899999999999987521000 00122233333221 24689999
Q ss_pred HHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 246 DMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 246 D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
|+|++++.+++.+. ++.+++.++..
T Consensus 214 dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 214 DVVNSILFLLSDRSASTSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred HHHHHHHHHhCchhhcccCCEEEECCCcc
Confidence 99999999997643 34677776643
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-25 Score=186.77 Aligned_cols=220 Identities=13% Similarity=0.023 Sum_probs=151.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----c----CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----L----IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~d~vi~ 100 (343)
|+||||||+|+||++++++|+++| ++|++++|....... .+.+|+.+.. + .++|+|||
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi~ 68 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAG-HTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLVC 68 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEEE
Confidence 589999999999999999999999 999999985432110 1456776542 1 37999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCC-CC-------CCCCC--CCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHP-QP-------ETYWG--NVN 165 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~-~~-------e~~~~--~~~ 165 (343)
+||.... ..++...++.|+.++.++++++.+. +. +||++||..+|+.....+ .. |+... ...
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T 2dkn_A 69 CAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQ 145 (255)
T ss_dssp CCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccc
Confidence 9986531 3557888999999999999987654 44 999999999986432111 00 00000 000
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
...+...|+.+|...|.+++.++.+ .|+++.++||+.++|+.. ..++.....+....... + ....++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~--------~~~~~~~~~~~~~~~~~-~-~~~~~~ 215 (255)
T 2dkn_A 146 QGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL--------QASKADPRYGESTRRFV-A-PLGRGS 215 (255)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH--------HHHHHCTTTHHHHHSCC-C-TTSSCB
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh--------hhcccchhhHHHHHHHH-H-HhcCCC
Confidence 0124567999999999999988766 589999999999998741 11111000000000000 1 223689
Q ss_pred ehHHHHHHHHHHHhcC---C-CcceEecCCCccCHHH
Q 019309 243 YVSDMVDGLIRLMEGE---N-TGPVNIGNPGEFTMLE 275 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~---~-~~~~~~~~~~~~s~~e 275 (343)
+++|+|++++.+++.+ . ++.|++.++..+++.|
T Consensus 216 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 216 EPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred CHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence 9999999999999865 2 4588999887766654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=179.36 Aligned_cols=221 Identities=18% Similarity=0.104 Sum_probs=156.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+|++|||||+|+||++++++|.++| ++|++++|+.....+.. ..+ ...+.++.+|+.|+.. .++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQAA-AEI-GPAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH-HHH-CTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HHh-CCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999 99999998532221111 222 2468899999998732 279
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|+|||+||...... ..++....++.|+.++..+++++... + .++|++||...+.
T Consensus 84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (259)
T 4e6p_A 84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR---------------- 147 (259)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc----------------
Confidence 99999999754322 23345667889999999998887533 2 3899999988763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC---CeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE---PLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+.+.++.+. |+++..++|+.++++... ....++....... ......+.....
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 222 (259)
T 4e6p_A 148 GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD-----GVDALFARYENRPRGEKKRLVGEAVPFG 222 (259)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH-----HHHHHHHHHHTCCTTHHHHHHHHHSTTS
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh-----hhhhhhhhhccCChHHHHHHHhccCCCC
Confidence 33344679999999999999988765 899999999999998521 1111122111110 001111112234
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
.+.+++|+|++++.++.... ++.+++.++..+|
T Consensus 223 r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 223 RMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp SCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred CCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 58899999999999986543 5588998886654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-24 Score=184.54 Aligned_cols=232 Identities=11% Similarity=0.026 Sum_probs=163.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 92 (343)
.+.+|+||||||+|+||+++++.|+++| ++|++++|+..........+.. ..++.++.+|+.+...
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 9999999853221111111100 2468999999998632
Q ss_pred -CCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHH-----cCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~-----~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+||..... ....+....++.|+.++..+++++.. .+. +||++||...+.
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 169 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------ 169 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc------------
Confidence 2589999999964321 22334567889999999999887753 234 899999987763
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCce
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...|.+++.++.+ .|+++.++||+.++++..... ..... .........+.
T Consensus 170 ----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~p~-------- 235 (302)
T 1w6u_A 170 ----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT--FEKEMIGRIPC-------- 235 (302)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH--HHHHHHTTCTT--------
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchh--hHHHHHhcCCc--------
Confidence 2234467999999999999998877 689999999999998742111 01111 11122222111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELIN 285 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g 285 (343)
..+++++|+|++++.++.... +..+++.++..+++.|+++.+.+..|
T Consensus 236 -~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 236 -GRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp -SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred -CCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 137889999999999997532 45889999888888888877776654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=168.00 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=137.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHH-hcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc-----cCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL-----LIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~-----~~~~d~vi~ 100 (343)
|+++||||||+|+||+++++.|+ ++| ++|++++|+... .+..+. ...++.++.+|+.|+. +.++|+|||
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTD-MHITLYGRQLKT---RIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEESSHHH---HSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEecCccc---cchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 34569999999999999999999 899 999999985320 222211 2368999999999863 458999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC-chHHhHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS-CYDEGKR 178 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~~K~ 178 (343)
++|.. |+. +.++++++++.++ |||++||..+|+..... ..+. .. .... .|+.+|.
T Consensus 80 ~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~~-----~~-~~~~~~y~~~K~ 136 (221)
T 3r6d_A 80 GAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEKW-----TF-DNLPISYVQGER 136 (221)
T ss_dssp SCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHHH-----HH-HTSCHHHHHHHH
T ss_pred cCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-cccc-----cc-cccccHHHHHHH
Confidence 99742 334 8899999999998 99999999988642110 0000 00 0112 6999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc-eeEeeeehHHHHHHHHHHH--
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT-QTRSFCYVSDMVDGLIRLM-- 255 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~D~a~~i~~~~-- 255 (343)
.+|..++ ..+++++++||++++++... ........+. ....+++.+|+|++++.++
T Consensus 137 ~~e~~~~----~~~i~~~~vrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 137 QARNVLR----ESNLNYTILRLTWLYNDPEX-----------------TDYELIPEGAQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHH----HSCSEEEEEEECEEECCTTC-----------------CCCEEECTTSCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHH----hCCCCEEEEechhhcCCCCC-----------------cceeeccCCccCCCceeeHHHHHHHHHHHHHh
Confidence 9999885 46999999999999987311 0111111111 1223899999999999999
Q ss_pred hcCC---CcceEecCC
Q 019309 256 EGEN---TGPVNIGNP 268 (343)
Q Consensus 256 ~~~~---~~~~~~~~~ 268 (343)
..+. ++.+.+.++
T Consensus 196 ~~~~~~~~~~~~i~~~ 211 (221)
T 3r6d_A 196 ADETPFHRTSIGVGEP 211 (221)
T ss_dssp SCCGGGTTEEEEEECT
T ss_pred cChhhhhcceeeecCC
Confidence 7654 456666654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=178.65 Aligned_cols=219 Identities=17% Similarity=0.072 Sum_probs=148.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC---------CCceEEEEcccCCccc-----
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG---------HPRFELIRHDVTEPLL----- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~d~~~~~~----- 92 (343)
+++++||||||+|+||+++++.|+++| ++|++++|+..... .+...+. ..++.++.+|+.|...
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQ-ETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHH-HHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHH-HHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 467899999999999999999999999 99999998532211 1111111 1468899999998632
Q ss_pred -------CCC-CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C-C-eEEEEeCCcccCCCCCC
Q 019309 93 -------IEV-DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLIH 154 (343)
Q Consensus 93 -------~~~-d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~-~-r~i~~SS~~v~~~~~~~ 154 (343)
.++ |+|||+||...... ...+....++.|+.++.++++++.+. + . +||++||...+.
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----- 157 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV----- 157 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-----
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc-----
Confidence 135 99999999654321 23355678899999999999987653 4 4 899999986542
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (343)
+..+...|+.+|...|.+.+.++.+ .|+++.++||++++++.... ....+......+.
T Consensus 158 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~---- 218 (264)
T 2pd6_A 158 -----------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK----VPQKVVDKITEMI---- 218 (264)
T ss_dssp -----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CTGGGC----
T ss_pred -----------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh----cCHHHHHHHHHhC----
Confidence 2233467999999999999988876 68999999999999986321 1111111111111
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHH
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLEL 276 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~ 276 (343)
....+++++|+|++++.++.... +..+++.++..++...+
T Consensus 219 -----~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 219 -----PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred -----CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 11246889999999999997532 45788888776655443
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=175.34 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=151.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---c-CCCceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---I-GHPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~---------- 92 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|+.....+..... . ...++.++.+|+.|+..
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999 99999998532211111111 0 12368889999998631
Q ss_pred --CCCCEEEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcc-cCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEV-YGDPLIHPQP 157 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v-~~~~~~~~~~ 157 (343)
.++|+|||+||...... ...+....++.|+.++..+++++... +.++|++||... +.
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~-------- 154 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH-------- 154 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS--------
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc--------
Confidence 27999999998653211 23345677899999999998888653 569999999876 53
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC---CccH--HHHHHHHHHcCCCe
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID---DGRV--VSNFIAQALRGEPL 229 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~---~~~~--~~~~~~~~~~~~~~ 229 (343)
+..+...|+.+|...|.+.+.++.+ .|+++.+++|+.+.++..... .... +...........+
T Consensus 155 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 225 (278)
T 1spx_A 155 --------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP- 225 (278)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT-
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC-
Confidence 2233457999999999999888765 589999999999998753211 0000 0000121111111
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcC----C-CcceEecCCCccCHHHHHHHHHHHh
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGE----N-TGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~----~-~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
...+++++|+|++++.++..+ . +..+++.++..+++.|+++.+.+.+
T Consensus 226 --------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 --------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp --------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred --------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 113789999999999998642 2 4578899989999999999988754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=173.83 Aligned_cols=219 Identities=17% Similarity=0.091 Sum_probs=154.1
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+.+|+||||||+|+||++++++|+++| ++|++++|+..........+. ...++.++.+|+.|+..
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 33567899999999999999999999999 999999985322111111111 12468999999998632
Q ss_pred -CCCCEEEEecCCCC-ccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPAS-PIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~-~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+||... ... ...+....++.|+.++.++++++.. .+. ++|++||...+..
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 156 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV----------- 156 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc-----------
Confidence 26999999998653 111 1223466789999999999888764 355 8999999876532
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
.+..+...|+.+|...|.+++.++.+ .|+++.++||+.++++..... .....+......+.++
T Consensus 157 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~--~~~~~~~~~~~~~~~~--------- 222 (260)
T 3awd_A 157 ---NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFG--MEKPELYDAWIAGTPM--------- 222 (260)
T ss_dssp ---CSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHH--HTCHHHHHHHHHTCTT---------
T ss_pred ---CCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcc--cCChHHHHHHHhcCCc---------
Confidence 12223367999999999999998877 689999999999999863200 0011233333333221
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+++++|+|++++.++.... +..+++.++.
T Consensus 223 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 223 GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 237899999999999997532 4478887764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=169.35 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=131.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~ 101 (343)
+++|+||||||+|+||++|++.|+++|.++|++++|.... .... ...+++++.+|+.|+. +.++|+|||+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~----~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK----IHKP-YPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG----SCSS-CCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh----hccc-ccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 3567899999999999999999999985699999985422 2221 2357999999999863 4589999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
++.... ...+.++++++++.++ |||++||..+|+........... ..+.. +...+..+
T Consensus 96 a~~~~~--------------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~ 154 (236)
T 3qvo_A 96 LTGEDL--------------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNN---AVIGE----PLKPFRRA 154 (236)
T ss_dssp CCSTTH--------------HHHHHHHHHHHHHTTCCEEEEECCCCC-------------------CG----GGHHHHHH
T ss_pred CCCCch--------------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchh---hcccc----hHHHHHHH
Confidence 974221 1235689999999998 89999999999764332211110 01222 33344445
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc-eeEeeeehHHHHHHHHHHHhcCC
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT-QTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
|+.+ .+.+++++++||+.++++.... ......+. ....+++++|+|++++.+++.+.
T Consensus 155 ~~~l----~~~gi~~~~vrPg~i~~~~~~~------------------~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~ 212 (236)
T 3qvo_A 155 ADAI----EASGLEYTILRPAWLTDEDIID------------------YELTSRNEPFKGTIVSRKSVAALITDIIDKPE 212 (236)
T ss_dssp HHHH----HTSCSEEEEEEECEEECCSCCC------------------CEEECTTSCCSCSEEEHHHHHHHHHHHHHSTT
T ss_pred HHHH----HHCCCCEEEEeCCcccCCCCcc------------------eEEeccCCCCCCcEECHHHHHHHHHHHHcCcc
Confidence 5544 3569999999999999874211 01111111 12358999999999999999765
Q ss_pred ---CcceEecCCCc
Q 019309 260 ---TGPVNIGNPGE 270 (343)
Q Consensus 260 ---~~~~~~~~~~~ 270 (343)
++.|++++++.
T Consensus 213 ~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 213 KHIGENIGINQPGT 226 (236)
T ss_dssp TTTTEEEEEECSSC
T ss_pred cccCeeEEecCCCC
Confidence 56889988654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-22 Score=169.46 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=154.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++|+||||||+|+||+++++.|.++| ++|++++|..... ....+.++.+|+.|+.. .+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~--------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSRSIKPS--------ADPDIHTVAGDISKPETADRIVREGIERFGR 96 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCCCC--------SSTTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhhc--------ccCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence 367899999999999999999999999 9999999854321 12378999999998732 27
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.. .
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------~ 162 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP--------------M 162 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC--------------B
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC--------------C
Confidence 999999999654322 23345677889999999999887 45565 8999999876532 1
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.++++.... . ......... ....+.
T Consensus 163 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~---~----~~~~~~~~~---------p~~r~~ 226 (260)
T 3un1_A 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA---E----THSTLAGLH---------PVGRMG 226 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG---G----GHHHHHTTS---------TTSSCB
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH---H----HHHHHhccC---------CCCCCc
Confidence 22344679999999999999998876 8999999999999986321 1 111112211 122467
Q ss_pred ehHHHHHHHHHHHhcCC--CcceEecCCCcc
Q 019309 243 YVSDMVDGLIRLMEGEN--TGPVNIGNPGEF 271 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~ 271 (343)
+++|+|++++.+.+... +..+++.+|...
T Consensus 227 ~~~dva~av~~L~~~~~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 227 EIRDVVDAVLYLEHAGFITGEILHVDGGQNA 257 (260)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHhcccCCCCCcEEEECCCeec
Confidence 89999999999965443 558888887654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=173.67 Aligned_cols=214 Identities=17% Similarity=0.083 Sum_probs=156.0
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
|+++|++|||||+|+||+++++.|.++| ++|++++|......+.+.+.+ ...++.++.+|+.|...
T Consensus 1 Ml~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 1 MKMTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CCCSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999 999988774322222222211 12468889999998632
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||...... ..+++...++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 146 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV------------- 146 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC-------------
Confidence 27999999999654322 23345668899999999999988 55566 999999987653
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.+.++.... .............++ .
T Consensus 147 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~ 210 (246)
T 3osu_A 147 ---GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA----LSDELKEQMLTQIPL---------A 210 (246)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC----SCHHHHHHHHTTCTT---------C
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc----cCHHHHHHHHhcCCC---------C
Confidence 2334467999999999999988874 48999999999999886432 223333444433322 2
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.+.+++|+|++++.++.... +..+++.++.
T Consensus 211 r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 211 RFGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 36778999999999997543 4578887764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=181.32 Aligned_cols=234 Identities=15% Similarity=0.082 Sum_probs=168.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~---------- 92 (343)
..+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+... ..+.++.+|++|+..
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999 99999998543222222222111 268899999998732
Q ss_pred --CCCCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|++|||||.... ....+++...++.|+.++..+++++.. .+. +||++||...+.
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 156 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN----------- 156 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC-----------
Confidence 369999999996321 112234467889999999999887753 334 899999998773
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...+.+.+.++.++ |+++..++|+.+.++...... .............++
T Consensus 157 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~~~p~-------- 221 (281)
T 3svt_A 157 -----THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT--ESAELSSDYAMCTPL-------- 221 (281)
T ss_dssp -----CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH--TCHHHHHHHHHHCSS--------
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc--cCHHHHHHHHhcCCC--------
Confidence 33345679999999999999988765 599999999999987521100 001122222222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC-HHHHHHHHHHHhCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT-MLELAETVKELINPGI 288 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s-~~e~~~~i~~~~g~~~ 288 (343)
..+.+++|+|++++.++.... +..+++.++..++ ..|+.+.+.+.++.+.
T Consensus 222 -~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 222 -PRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred -CCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 236689999999999997543 5588998888776 7888999999887654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-22 Score=170.64 Aligned_cols=211 Identities=17% Similarity=0.096 Sum_probs=156.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||.+++++|.++| ++|++++|+.....+..... ..++.++.+|+.|... .+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999 99999998654332222222 2578899999998732 26
Q ss_pred CCEEEEecCCCCc------cccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~------~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|++||+||.... ....++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 151 (271)
T 3tzq_B 86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-------------- 151 (271)
T ss_dssp CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC--------------
Confidence 9999999997532 1123445678899999999999988 55666 999999988763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.++.+ +|+++..++|+.++++..... .............+. ..
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~~~~---------~r 217 (271)
T 3tzq_B 152 --AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVG---LPQPIVDIFATHHLA---------GR 217 (271)
T ss_dssp --BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------CHHHHHHHHTTSTT---------SS
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccccc---CCHHHHHHHHhcCCC---------CC
Confidence 3334567999999999999998877 689999999999999864311 112222323222211 13
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
+.+++|+|++++.++.... +..+++.++
T Consensus 218 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 218 IGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 6788999999999997543 457788776
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=173.63 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=151.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~v 98 (343)
+.+|+||||||+|+||+++++.|.++| ++|++++|+.... +.+...+ .+++++.+|+.++. ..++|+|
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADL-DSLVREC--PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHc--CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 357899999999999999999999999 9999999853211 1111111 35678899999863 2258999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
||+||...... ..++....++.|+.++..+++++.+. + . ++|++||...+. +..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 144 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc----------------CCC
Confidence 99998654221 12344678899999998888877653 4 4 899999988763 233
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC--CCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI--DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
+...|+.+|...|.+++.++.+ .++++.++||+.++++.... .... .........+ ...+++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~ 211 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH----KAKTMLNRIP---------LGKFAE 211 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTT----HHHHHHHTCT---------TCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChH----HHHHHHhhCC---------CCCCcC
Confidence 4567999999999999998876 47999999999999975221 0011 1122222211 135789
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
++|+|++++.++.... +..|++.++..
T Consensus 212 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 212 VEHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 9999999999997542 44788887654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=174.66 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=153.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||+++++.|+++| ++|++++|+.....+....+.. ..++.++.+|+.|+..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999 9999999853211111111110 2468899999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 149 (263)
T 3ai3_A 84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ-------------- 149 (263)
T ss_dssp SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC--------------
Confidence 26999999999654221 233456778999999988888774 4555 999999998874
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCcc-------HHHHHHHHHHcCCCeEEec
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGR-------VVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...|.+.+.++.+ +|+++.++||++++++........ ............. .
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 222 (263)
T 3ai3_A 150 --PLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH-A---- 222 (263)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH-C----
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC-C----
Confidence 2233467999999999999998876 589999999999998742100000 0011111111110 0
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
....+++++|+|++++.++..+. +..+++.++..++
T Consensus 223 ---p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 223 ---PIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred ---CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 11247899999999999997543 4478888876654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=175.81 Aligned_cols=215 Identities=15% Similarity=0.068 Sum_probs=138.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------- 92 (343)
+.+|+||||||+|+||+++++.|+++| ++|++++|+..........+. ...++.++.+|+.+...
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999999 999999985322111111111 12468889999998621
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++.++++++ ++.+. ++|++||...+.
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 156 (266)
T 1xq1_A 91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-------------- 156 (266)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc--------------
Confidence 47999999998653221 23345567899999999999988 45565 999999988763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||++++++..... ....+....... . ....
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~--~-------~~~~ 222 (266)
T 1xq1_A 157 --SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISR--K-------PLGR 222 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh---cCHHHHHHHHhc--C-------CCCC
Confidence 22334679999999999999988764 89999999999999863211 001111111111 1 1124
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
+++++|+|++++.++.... +..+++.++..
T Consensus 223 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 223 FGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp -CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred CcCHHHHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 7899999999999997532 44778877654
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=171.31 Aligned_cols=181 Identities=19% Similarity=0.138 Sum_probs=138.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------CCCCEEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------IEVDQIYH 100 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~d~vi~ 100 (343)
+|+||||||+|+||++++++|. +| ++|++++|... .+.+|+.++.. .++|+|||
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~ 64 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVS 64 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999 99 99999998531 46788887632 24899999
Q ss_pred ecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCch
Q 019309 101 LACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 101 ~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y 173 (343)
+||....... ..+....++.|+.++.++++++.+. +.+||++||...+. +..+...|
T Consensus 65 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y 128 (202)
T 3d7l_A 65 ATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASA 128 (202)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHH
T ss_pred CCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHH
Confidence 9996532222 2233466789999999999999876 45899999987653 33344679
Q ss_pred HHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHH
Q 019309 174 DEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i 251 (343)
+.+|...|.+++.++.+. ++++.++||+.++++.. . .. +......+++++|+|+++
T Consensus 129 ~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~---------~----~~---------~~~~~~~~~~~~dva~~~ 186 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD---------K----LE---------PFFEGFLPVPAAKVARAF 186 (202)
T ss_dssp HHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH---------H----HG---------GGSTTCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh---------h----hh---------hhccccCCCCHHHHHHHH
Confidence 999999999999887653 89999999999998741 0 00 111234689999999999
Q ss_pred HHHHhcCCCc-ceEe
Q 019309 252 IRLMEGENTG-PVNI 265 (343)
Q Consensus 252 ~~~~~~~~~~-~~~~ 265 (343)
+.+++....| .|++
T Consensus 187 ~~~~~~~~~G~~~~v 201 (202)
T 3d7l_A 187 EKSVFGAQTGESYQV 201 (202)
T ss_dssp HHHHHSCCCSCEEEE
T ss_pred HHhhhccccCceEec
Confidence 9988655444 6665
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=175.05 Aligned_cols=216 Identities=18% Similarity=0.099 Sum_probs=155.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC--CceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH--PRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~------------~ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+... .++.++.+|+.|+. +
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999 99999998643332222222221 47889999999873 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ..+++...+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~-------------- 183 (293)
T 3rih_A 118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV-------------- 183 (293)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc--------------
Confidence 36999999999654322 23455678899999999999987 35555 999999986531
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.+..+...|+.+|...+.+.+.++.+ .|+++..++||+|+++.... ....+........++ ..
T Consensus 184 -~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~r 249 (293)
T 3rih_A 184 -TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVD----MGEEYISGMARSIPM---------GM 249 (293)
T ss_dssp -BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH----TCHHHHHHHHTTSTT---------SS
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhh----ccHHHHHHHHhcCCC---------CC
Confidence 12223467999999999999988876 48999999999999874211 112233333333222 12
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+..++|+|++++.++.... +..+++.+|..+
T Consensus 250 ~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 250 LGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 5678999999999997543 457788777654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=170.96 Aligned_cols=214 Identities=14% Similarity=0.057 Sum_probs=150.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
|+|++|||||+|+||++++++|+++| ++|++++|+............. ..++.++.+|+.|+.. .
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 9999999853221111111101 2368899999998632 2
Q ss_pred CCCEEEEecCCCCccc-------cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF-------YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~-------~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
++|+|||+||...... ...+....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------------ 147 (250)
T 2cfc_A 80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV------------ 147 (250)
T ss_dssp CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc------------
Confidence 7999999998654221 22345677889999887666655 44566 999999988763
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||++++++..... .....+........+ .
T Consensus 148 ----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~~---------~ 212 (250)
T 2cfc_A 148 ----AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWR--LDQPELRDQVLARIP---------Q 212 (250)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHH--HTSHHHHHHHHTTCT---------T
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccc--cCCHHHHHHHHhcCC---------C
Confidence 22334679999999999999988765 89999999999999863210 000122233333221 1
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+.+++|+|++++.++..+. +..+++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 236799999999999997643 3467776653
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=173.18 Aligned_cols=185 Identities=14% Similarity=0.176 Sum_probs=139.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------CCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------IEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~d~vi~~ 101 (343)
|+||||||+|+||++++++|+++ +|++++|+.... +.+...+. . .++.+|+.|+.. .++|+|||+
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~-~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 73 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGAL-AELAREVG--A-RALPADLADELEAKALLEEAGPLDLLVHA 73 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHH-HHHHHHHT--C-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHH-HHHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence 68999999999999999999988 899998843211 11111122 2 788899998632 279999999
Q ss_pred cCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHh
Q 019309 102 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 102 a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
||...... ...+....++.|+.++..+++++++.+. +||++||..+|. +..+...|+.+
T Consensus 74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~s 137 (207)
T 2yut_A 74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV----------------QVPGFAAYAAA 137 (207)
T ss_dssp CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH----------------SSTTBHHHHHH
T ss_pred CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCcchHHHH
Confidence 98654321 3345567889999999999999977766 899999998873 33445679999
Q ss_pred HHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHH
Q 019309 177 KRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR 253 (343)
Q Consensus 177 K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~ 253 (343)
|...|.+++.++.+ .|+++.++||+.++++... +.+.....+++++|+|++++.
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-----------------------~~~~~~~~~~~~~dva~~~~~ 194 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA-----------------------PLGGPPKGALSPEEAARKVLE 194 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-----------------------GGTSCCTTCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc-----------------------ccCCCCCCCCCHHHHHHHHHH
Confidence 99999999998876 5899999999999987410 011123568999999999999
Q ss_pred HHhcCCC
Q 019309 254 LMEGENT 260 (343)
Q Consensus 254 ~~~~~~~ 260 (343)
+++++..
T Consensus 195 ~~~~~~~ 201 (207)
T 2yut_A 195 GLFREPV 201 (207)
T ss_dssp HHC--CC
T ss_pred HHhCCCC
Confidence 9987663
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=167.61 Aligned_cols=215 Identities=16% Similarity=0.116 Sum_probs=149.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
..+|++|||||+|+||.++++.|.++| ++|++++|+.....+..... ..++.++.+|+.|+.. .+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 99999998654433222222 2468899999998632 27
Q ss_pred CCEEEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEeCCcccCCCCCCC
Q 019309 95 VDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~~~----------~~-r~i~~SS~~v~~~~~~~~ 155 (343)
+|++||+||...... ..+++...++.|+.++..+++++... +. ++|++||...+.
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~------ 155 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD------ 155 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH------
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc------
Confidence 999999999764321 23455678899999999999988753 33 899999988763
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
+..+...|+.+|...+.+.+.++.+ +|+++..++||.|.++.... ............. ++
T Consensus 156 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~--p~- 218 (257)
T 3tpc_A 156 ----------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG----MPQDVQDALAASV--PF- 218 (257)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------------CCS--SS-
T ss_pred ----------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc----CCHHHHHHHHhcC--CC-
Confidence 2334467999999999999888876 68999999999999875311 1111111111111 10
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT 272 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s 272 (343)
...+.+++|+|++++.+++... +..+++.++..++
T Consensus 219 -----~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 219 -----PPRLGRAEEYAALVKHICENTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp -----SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCCC-
T ss_pred -----CCCCCCHHHHHHHHHHHcccCCcCCcEEEECCCccCC
Confidence 0247889999999999998643 4577887776543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=173.86 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=151.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|......+.+...+ ...++.++.+|+.|+..
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999 999999883211111111111 12468899999998632
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|+|||+||...... ...+....++.|+.++.++++++.+. +.+||++||...+..
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 162 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT--------------- 162 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC---------------
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccC---------------
Confidence 27999999998654211 22344678899999999999988765 458999999987621
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCc--------cHH-HHHHHHHHcCCCeEEec
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDG--------RVV-SNFIAQALRGEPLTVQK 233 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...|.+++.++.+. ++++.++||+.++++....... ... .........+.
T Consensus 163 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 236 (274)
T 1ja9_A 163 GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN------ 236 (274)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcC------
Confidence 11233579999999999999988764 8999999999998864210000 000 11222222221
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
....+++++|+|++++.++..+. +..|++.++
T Consensus 237 ---~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 237 ---PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 12357899999999999997542 457888775
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-22 Score=168.18 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=148.3
Q ss_pred hhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----------
Q 019309 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 22 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 91 (343)
++.+.+.+|++|||||+|+||+++++.|.++| ++|++++|......+.+. ..++.++.+|+.++.
T Consensus 20 ~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (260)
T 3gem_A 20 QGHMTLSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHASVTELR----QAGAVALYGDFSCETGIMAFIDLLK 94 (260)
T ss_dssp -------CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESSCCHHHHHHH----HHTCEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHH----hcCCeEEECCCCCHHHHHHHHHHHH
Confidence 44555678999999999999999999999999 999999986432222222 225789999999873
Q ss_pred --cCCCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
..++|+|||+||...... ...+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 95 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------ 162 (260)
T 3gem_A 95 TQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK------------ 162 (260)
T ss_dssp HHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT------------
T ss_pred HhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC------------
Confidence 236999999999654322 2233456889999999999888753 344 999999988763
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+.+ +++..++||.+.++.... ...........+ ..
T Consensus 163 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~------~~~~~~~~~~~p---------~~ 223 (260)
T 3gem_A 163 ----GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD------AAYRANALAKSA---------LG 223 (260)
T ss_dssp ----CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---------------------CC---------SC
T ss_pred ----CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC------HHHHHHHHhcCC---------CC
Confidence 333456799999999999999988764 899999999998764211 111111111111 12
Q ss_pred eeeehHHHHHHHHHHHhcCC--CcceEecCCCccC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT 272 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s 272 (343)
.+..++|+|++++.+++... +..+++.+|..++
T Consensus 224 r~~~~edva~~v~~L~~~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 224 IEPGAEVIYQSLRYLLDSTYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp CCCCTHHHHHHHHHHHHCSSCCSCEEEESTTTTTC
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCCEEEECCCcccC
Confidence 25678999999999996544 5588888877664
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=168.98 Aligned_cols=215 Identities=14% Similarity=0.083 Sum_probs=150.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 92 (343)
.+.+|+||||||+|+||++++++|+++| ++|++++|..... +.....+. ..++.++.+|+.+...
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSHPAD-EKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSSCCH-HHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 9999999864322 12211111 2468899999998632
Q ss_pred -CCCCEEEEecCCCCc------cccccChHHHHHHHHHH----HHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASP------IFYKYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~------~~~~~~~~~~~~~nv~~----~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..+|+|||+||.... ....++....++.|+.+ +..++..+++.+. +||++||...+..
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 178 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV---------- 178 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC----------
Confidence 259999999986543 12223445678899999 5677777777776 9999999876521
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
.+..+...|+.+|...|.+++.++.+. + ++.+++|+.+.++...... ...........+
T Consensus 179 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~p--------- 240 (279)
T 3ctm_A 179 ----NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS----KDMKAKWWQLTP--------- 240 (279)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC----HHHHHHHHHHST---------
T ss_pred ----CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC----hHHHHHHHHhCC---------
Confidence 013344679999999999999998774 5 8999999999887532211 111111111111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
...+++++|+|++++.++.... +..+++.++..
T Consensus 241 ~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 241 LGREGLTQELVGGYLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp TCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred ccCCcCHHHHHHHHHHHhCccccCccCCEEEECCCee
Confidence 1137889999999999997532 44778877643
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=173.15 Aligned_cols=222 Identities=15% Similarity=0.064 Sum_probs=155.0
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
.+++|+||||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++.+|+.|...
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999 999999985433222222111 02468899999998632
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~--~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
..+|+|||+||...... ...+....++.|+.++.++++++... + .+||++||...+..... +.
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~-- 163 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SL-- 163 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ET--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cc--
Confidence 25999999999654321 22344567899999999999887543 3 38999999877642110 00
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
.+..+...|+.+|...|.+++.++.+. |+++.++||++++++..... ............+ .
T Consensus 164 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~ 227 (265)
T 1h5q_A 164 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIP---------L 227 (265)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCT---------T
T ss_pred ---cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----chhHHHHHHhcCc---------c
Confidence 122345679999999999999988764 89999999999998753221 1122222222211 1
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
..+++++|+|++++.++.... +..+++.++..
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 228 NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 237889999999999997542 45788887654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=168.48 Aligned_cols=214 Identities=14% Similarity=0.029 Sum_probs=148.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCce-EEEEcccCCccc-----------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRF-ELIRHDVTEPLL-----------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~-----------~~ 94 (343)
+.+|+++||||+|+||++++++|+++| ++|++++|+..... .....+. .++ .++.+|+.|... .+
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG-ARLILIDREAAALD-RAAQELG-AAVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHHG-GGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHhc-ccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999 99999998532111 1111111 245 889999998631 47
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||....... ..+....++.|+.++..+++++ ++.+. +||++||...+.. .
T Consensus 86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------------~ 151 (254)
T 2wsb_A 86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIV--------------N 151 (254)
T ss_dssp CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------C
T ss_pred CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccC--------------C
Confidence 9999999996543222 2234567889999977666654 45566 9999999887642 1
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||+.++++....... ...+........+ ...++
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~~~ 220 (254)
T 2wsb_A 152 RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE--RPELFETWLDMTP---------MGRCG 220 (254)
T ss_dssp SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT--CHHHHHHHHHTST---------TSSCB
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc--ChHHHHHHHhcCC---------CCCCC
Confidence 22233679999999999999888775 8999999999999874210000 0122223332221 12478
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
+++|+|++++.++.... +..+++.++
T Consensus 221 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 221 EPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 99999999999996532 446777665
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=167.88 Aligned_cols=205 Identities=17% Similarity=0.102 Sum_probs=151.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----------CCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----------IEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~d 96 (343)
|+|+||||||+|+||++++++|+++| ++|++++|... . ..+.++.+|+.++.. .++|
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~--~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d 68 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE--G---------EDLIYVEGDVTREEDVRRAVARAQEEAPLF 68 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC--S---------SSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEccCcc--c---------cceEEEeCCCCCHHHHHHHHHHHHhhCCce
Confidence 46899999999999999999999999 99999998542 1 245889999998631 2689
Q ss_pred EEEEecCCCCccccc--------cChHHHHHHHHHHHHHHHHHHHHc----C------C-eEEEEeCCcccCCCCCCCCC
Q 019309 97 QIYHLACPASPIFYK--------YNPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~--------~~~~~~~~~nv~~~~~l~~~a~~~----~------~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
+|||+||........ ++....++.|+.++.++++++.+. + . +||++||...+.
T Consensus 69 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 140 (242)
T 1uay_A 69 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE-------- 140 (242)
T ss_dssp EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH--------
T ss_pred EEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence 999999865432211 145678899999999999988643 1 1 899999998874
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...|.+.+.++.+. |+++.++||+.++++..... ...+........+.
T Consensus 141 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~----- 203 (242)
T 1uay_A 141 --------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASLAAQVPF----- 203 (242)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHHHTTCCS-----
T ss_pred --------CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc----chhHHHHHHhhCCC-----
Confidence 22334679999999999998887764 89999999999998753211 12222333332211
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT 272 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s 272 (343)
...+++++|+|++++.++.... +..+++.++..++
T Consensus 204 ---~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 ---PPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---SCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCCCC
T ss_pred ---cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCCeecC
Confidence 0237889999999999998743 4578888876543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=171.26 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=150.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------ 91 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|......+.....+ ....+.++.+|+.|+.
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999 999999884322222222111 1357889999999863
Q ss_pred cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
+.++|+|||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 168 (281)
T 3v2h_A 102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV------------- 168 (281)
T ss_dssp TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc-------------
Confidence 237999999999754322 23345677899999999999987 45555 899999987763
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHH--HHcCCC-eEEecCCc
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQ--ALRGEP-LTVQKPGT 236 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++..... ....... ...... .....+..
T Consensus 169 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
T 3v2h_A 169 ---ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQ----IPDQARTRGITEEQVINEVMLKGQ 241 (281)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------------------CC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhh----cchhhhhcCCCHHHHHHHHHHhcC
Confidence 23334679999999999999888764 79999999999998753211 1100000 000000 01112223
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+++++|+|++++.++.... +..+++.+|.
T Consensus 242 p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 242 PTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278 (281)
T ss_dssp TTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTG
T ss_pred CCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCc
Confidence 34568999999999999997653 4577877763
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=166.39 Aligned_cols=215 Identities=12% Similarity=0.025 Sum_probs=147.9
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCC
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEV 95 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~ 95 (343)
.....+++||||||+|+||+++++.|.++| ++|++++|+.... +.+...+. ..+.+..+|+.+.. ..++
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKL-KSLGNALK-DNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHC-SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHH-HHHHHHhc-cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 334578999999999999999999999999 9999999843221 11222222 47889999998863 2369
Q ss_pred CEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||+||..... ....+....++.|+.++..+++++. +.+. +||++||...+. +
T Consensus 86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 149 (249)
T 3f9i_A 86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA----------------G 149 (249)
T ss_dssp SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC------------------C
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc----------------C
Confidence 9999999965422 2345677889999999999888774 3455 999999988763 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++...... .........+. ....+.+
T Consensus 150 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~---------~~~~~~~ 216 (249)
T 3f9i_A 150 NPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN----EKQREAIVQKI---------PLGTYGI 216 (249)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC----HHHHHHHHHHC---------TTCSCBC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC----HHHHHHHHhcC---------CCCCCcC
Confidence 334567999999999999888876 4799999999999887532211 12222222221 1224788
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
++|+|++++.++.... +..+++.++..
T Consensus 217 ~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 217 PEDVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 9999999999997543 45778877653
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=164.25 Aligned_cols=214 Identities=16% Similarity=0.081 Sum_probs=142.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|+... . ..++.++.+|+.|+. ..+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~-----~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 74 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQ-----E----QYPFATEVMDVADAAQVAQVCQRLLAETER 74 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCCCS-----S----CCSSEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCchhh-----h----cCCceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 999999985431 1 113788899999863 126
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 138 (250)
T 2fwm_X 75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT---------------- 138 (250)
T ss_dssp CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------
Confidence 999999999654221 23455678899999999998888 44555 999999998763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHH-HHHcCCCeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIA-QALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...|.+.+.++.+. |+++.+++|+.++++....... ...... ...... ...........+
T Consensus 139 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~p~~~~ 214 (250)
T 2fwm_X 139 PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV--SDDAEEQRIRGFG--EQFKLGIPLGKI 214 (250)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc--ChhHHHHHHhhhh--hcccccCCCCCC
Confidence 33344679999999999999988764 8999999999999875321100 000000 000000 000000112247
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.+++|+|++++.++.... +..+++.++..
T Consensus 215 ~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 215 ARPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp -CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 899999999999997642 44677777644
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=171.10 Aligned_cols=211 Identities=12% Similarity=0.028 Sum_probs=148.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 92 (343)
+++|+|+||||+|+||+++++.|+++| ++|++++|+..... .+...+ ...++.++.+|+.|+..
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSGERAK-AVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCChHHHH-HHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 99999998532111 111111 12468899999998631
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ...+....++.|+.++..+++++ ++.+. +||++||...+.
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 149 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFT------------- 149 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcC-------------
Confidence 27999999998654221 22345678899999996666554 45666 999999986542
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+.+.++.+. ++++.++||+.++++..... ...+........+ ..
T Consensus 150 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~ 213 (248)
T 2pnf_A 150 ---GNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL----SEEIKQKYKEQIP---------LG 213 (248)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCT---------TS
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc----cHHHHHHHHhcCC---------CC
Confidence 11233579999999999998887653 79999999999998753211 1112222222211 12
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+++++|+|++++.++.... +..|++.++
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 47899999999999997532 447888765
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=171.22 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=152.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
++++++||||+|+||.++++.|.++| ++|+++.|......+.+..... ..++.++.+|+.++.. .
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999 9999997754332222222221 2468999999998732 2
Q ss_pred CCCEEEEecCCC--Ccc----ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPA--SPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 94 ~~d~vi~~a~~~--~~~----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
++|+|||+||.. ... ...++....++.|+.++..+++++ ++.+. ++|++||...++.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------ 152 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA------------ 152 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC------------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc------------
Confidence 799999999932 111 122345677899999999999988 56666 9999999865421
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
.+..+...|+.+|...+.+.+.++.+ .|+++..++||.++++.... ............ ....
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~---------~p~~ 217 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA----TIQEARQLKEHN---------TPIG 217 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC----CHHHHHHC-----------------
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh----ccHHHHHHHhhc---------CCCC
Confidence 22334467999999999999988876 58999999999999876322 222222111111 1123
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+.+++|+|++++.++.... +..+++.+|-..
T Consensus 218 r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceee
Confidence 46889999999999997543 457888877544
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=169.78 Aligned_cols=216 Identities=17% Similarity=0.089 Sum_probs=155.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+.. ..++.++.+|+.|+..
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 9999999853322221222211 2478899999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||...... ..++....++.|+.++..+++++... +. ++|++||.....
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 152 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI-------------- 152 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc--------------
Confidence 27999999999654322 23345567899999999988887654 55 999999986531
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
.+..+...|+.+|...+.+.+.++.+ +|+++..++|+.++++...... ...........+. ..
T Consensus 153 -~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~r 218 (262)
T 3pk0_A 153 -TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG----EEYIASMARSIPA---------GA 218 (262)
T ss_dssp -BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC----HHHHHHHHTTSTT---------SS
T ss_pred -CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC----HHHHHHHHhcCCC---------CC
Confidence 12233467999999999999998877 5899999999999987422111 2233333332211 13
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+.+++|+|++++.++.... +..+++.++..+
T Consensus 219 ~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 219 LGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 6788999999999997543 457888877554
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=169.31 Aligned_cols=212 Identities=12% Similarity=0.044 Sum_probs=140.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|+||||||+|+||++++++|+++| ++|+++ .|.. ...+.....+ ...++.++.+|+.|+..
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPAS-TSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTC-SHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCH-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 999998 4432 2111111111 12468899999998732
Q ss_pred -CCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||..... ....+....++.|+.++.++++++. +.+. +||++||...+.
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 147 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII------------- 147 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc-------------
Confidence 2799999999865321 1334567889999999888877765 3565 999999975431
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+++.++.+. ++++.+++|+.+.++.... ...........+.+ ..
T Consensus 148 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~ 211 (247)
T 2hq1_A 148 ---GNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV----LPDKVKEMYLNNIP---------LK 211 (247)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTST---------TS
T ss_pred ---CCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh----cchHHHHHHHhhCC---------CC
Confidence 11234679999999999999988764 7999999999987753111 00112222222211 12
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.+++++|+|++++.++.... +..|++.++.
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 212 RFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 47899999999999987532 4478888764
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-22 Score=168.68 Aligned_cols=212 Identities=15% Similarity=0.029 Sum_probs=150.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|..... +.....+. .++.++.+|+.|+.. .+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~ 86 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMAA-QAVVAGLE-NGGFAVEVDVTKRASVDAAMQKAIDALGG 86 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHTCT-TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHHh-cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 9999999853211 11111122 267889999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ...+....++.|+.++..+++++.. .+ .++|++||...+.
T Consensus 87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 151 (263)
T 3ak4_A 87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV--------------- 151 (263)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---------------
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc---------------
Confidence 999999999654221 2234567789999999998887754 34 4999999987753
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH-----------HHHHHHHHcCCCeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV-----------SNFIAQALRGEPLT 230 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 230 (343)
+..+...|+.+|...|.+.+.++.+. |+++.++||+.++++... ... ...........
T Consensus 152 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 223 (263)
T 3ak4_A 152 -GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE----REIIWEAELRGMTPEAVRAEYVSLT--- 223 (263)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH----HHHHHHHHHHTSCHHHHHHHHHHTC---
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh----hhccccccccccCcHHHHHHHHhcC---
Confidence 22234679999999999999888764 899999999999886411 110 11111111111
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+++++|+|++++.++.... +..+++.++..
T Consensus 224 ------p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 ------PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp ------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred ------CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 11247899999999999997642 44788887654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=170.85 Aligned_cols=219 Identities=14% Similarity=0.024 Sum_probs=155.8
Q ss_pred ccCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc----------
Q 019309 26 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 26 ~~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~---------- 92 (343)
.+.+|++|||||+ |+||+++++.|.++| ++|++++|... ..+....+.. ...+.++.+|+.|+..
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999 999999999999999 99999998542 1112222111 1247889999998632
Q ss_pred --CCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+|||+||.... .....+....++.|+.++..+++++... +.+||++||...+.
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 152 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK---------- 152 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC----------
Confidence 268999999996542 1123445678899999999999999865 34899999987653
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.++++..... ..............++
T Consensus 153 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~p~------- 217 (261)
T 2wyu_A 153 ------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI--PGFTKMYDRVAQTAPL------- 217 (261)
T ss_dssp ------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC--TTHHHHHHHHHHHSTT-------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc--cccHHHHHHHHhcCCC-------
Confidence 22234579999999999999988765 89999999999999753211 1112222322222111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
..+.+++|+|++++.++.... +..+++.++..++.
T Consensus 218 --~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~~ 256 (261)
T 2wyu_A 218 --RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMG 256 (261)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred --CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccccC
Confidence 125789999999999996432 44788888765543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=167.46 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=152.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 93 (343)
.+.+|+||||||+|+||+++++.|+++| ++|++++|......+ ....+ ..++.++.+|+.++.. .
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEA-QAKKL-GNNCVFAPADVTSEKDVQTALALAKGKFG 85 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcHhHHH-HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 3467899999999999999999999999 999999986533222 22222 2468999999998631 2
Q ss_pred CCCEEEEecCCCCcc----------ccccChHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEeCCcccCCCC
Q 019309 94 EVDQIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPL 152 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~----------~~~~~~~~~~~~nv~~~~~l~~~a~~~----------~~-r~i~~SS~~v~~~~~ 152 (343)
++|+|||+||..... ....+....++.|+.++..+++++... +. +||++||...+.
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--- 162 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE--- 162 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC---
Confidence 799999999965432 123345678899999999999988754 55 899999998763
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
+..+...|+.+|...+.+.+.++.+ .++++.+++|+++.++..... ........... .
T Consensus 163 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~--~ 223 (265)
T 2o23_A 163 -------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL----PEKVCNFLASQ--V 223 (265)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHT--C
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc----CHHHHHHHHHc--C
Confidence 2233467999999999999888766 489999999999988752210 00111111111 1
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCcc
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEF 271 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~ 271 (343)
+. ...+++++|+|++++.+++... +..+++.++..+
T Consensus 224 ~~------~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 224 PF------PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp SS------SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCCC
T ss_pred CC------cCCCCCHHHHHHHHHHHhhcCccCceEEEECCCEec
Confidence 10 0236889999999999998654 447777776543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=167.91 Aligned_cols=214 Identities=14% Similarity=0.025 Sum_probs=150.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|......+.+...+ ...++.++.+|+.++..
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999 999999983211111111111 12468889999998631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC-C-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ...+....++.|+.++..+++++.. .+ . +||++||...+.
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------- 150 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------- 150 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-------------
Confidence 26999999999654321 2234557789999999888777653 34 3 999999987652
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCce
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...|.+.+.++.+. ++++.++||+.++++... ... ...........+
T Consensus 151 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~--------- 214 (261)
T 1gee_A 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA----EKFADPEQRADVESMIP--------- 214 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH----HHHHSHHHHHHHHTTCT---------
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh----hcccChhHHHHHHhcCC---------
Confidence 33445679999999999988887664 899999999999987521 110 112222222111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
...+++++|+|++++.++.... +..+++.++..
T Consensus 215 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 215 MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 1247899999999999997532 44777777654
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=168.28 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=151.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|.... +.....+. . .++.+|+.|+. ..+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~--~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG--KEVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALGR 77 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH--HHHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhH--HHHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 999999986543 22222222 3 78899999863 126
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ...+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 141 (256)
T 2d1y_A 78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------------- 141 (256)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------------
Confidence 999999999654322 1234467889999999999887753 455 999999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHH-cCCCeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL-RGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...|.+.+.++.+. |+++.+++|+.+.++. ....+.... .......+........+
T Consensus 142 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T 2d1y_A 142 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA--------VLEAIALSPDPERTRRDWEDLHALRRL 213 (256)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH--------HHHHHC--------CHHHHTTSTTSSC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch--------hhhccccccCCHHHHHHHHhcCCCCCC
Confidence 22234679999999999999888764 7999999999887652 111100000 00000001111122358
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
++++|+|++++.++.... +..+++.++..+++
T Consensus 214 ~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 214 GKPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred cCHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 899999999999997642 44788888766544
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=172.50 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=154.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|......+...... ...++.++.+|+.|+..
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999 999999985432222222221 12478899999998632
Q ss_pred CCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||...... ..++....+++|+.++..+++++... +.++|++||...+.
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--------------- 188 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE--------------- 188 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH---------------
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC---------------
Confidence 26999999998653211 33455678999999999999999764 23899999998763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.|+++..... .-......... ......+
T Consensus 189 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~---------~~p~~r~ 255 (291)
T 3ijr_A 189 -GNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS---FDEKKVSQFGS---------NVPMQRP 255 (291)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH---SCHHHHHHTTT---------TSTTSSC
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc---CCHHHHHHHHc---------cCCCCCC
Confidence 22334679999999999999988775 89999999999998741100 00111111111 1122346
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|+|++++.++.... +..+++.+|..+
T Consensus 256 ~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 256 GQPYELAPAYVYLASSDSSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp BCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCCC
T ss_pred cCHHHHHHHHHHHhCCccCCCcCCEEEECCCccc
Confidence 789999999999997543 447787776543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=174.19 Aligned_cols=216 Identities=15% Similarity=0.029 Sum_probs=152.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|......+....+. ...++.++.+|+.|... .
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 999999985322111111111 12468889999988632 2
Q ss_pred CCCEEEEecCCCCc--c---ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~--~---~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
++|+|||+||.... . ....+....++.|+.++..+++++. +.+. +||++||...|.
T Consensus 91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 156 (260)
T 2zat_A 91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-------------- 156 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC--------------
Confidence 79999999986431 1 1223446778999999988888764 4566 999999998874
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...|.+.+.++.+. |+++.+++|+.+.++... ... .......... ...
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~---------~~~ 221 (260)
T 2zat_A 157 --PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ----VLWMDKARKEYMKES---------LRI 221 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTH----HHHSSHHHHHHHHHH---------HTC
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccch----hcccChHHHHHHHhc---------CCC
Confidence 23344679999999999999988764 899999999999887521 000 0001111110 011
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
..+.+++|+|++++.++.... +..+++.++..++
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 247899999999999997542 4588998887665
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=169.84 Aligned_cols=214 Identities=11% Similarity=0.038 Sum_probs=151.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|......+.+...+ ...++.++.+|+.++..
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999 999999986222222221111 12468899999998732
Q ss_pred CCCCEEEEecCC-CCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC------CeEEEEeCCcccCCCCCCCCC
Q 019309 93 IEVDQIYHLACP-ASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG------ARILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ~~~d~vi~~a~~-~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~------~r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||. ..... ...+....++.|+.++..+++++.. .+ .++|++||...+..
T Consensus 84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 156 (258)
T 3afn_B 84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------- 156 (258)
T ss_dssp SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC-------
T ss_pred CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC-------
Confidence 279999999986 32111 1223456789999999988886632 22 48999999876631
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||+.++++..... ...+......+.+
T Consensus 157 --------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~------ 218 (258)
T 3afn_B 157 --------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK----TQDVRDRISNGIP------ 218 (258)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC----CHHHHHHHHTTCT------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc----CHHHHHHHhccCC------
Confidence 22334679999999999999888765 89999999999999863321 1223333333321
Q ss_pred CceeEeeeehHHHHHHHHHHHhcC----C-CcceEecCCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGE----N-TGPVNIGNPG 269 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~----~-~~~~~~~~~~ 269 (343)
...+++++|+|++++.++... . +..|++.++.
T Consensus 219 ---~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ---MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp ---TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred ---CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 125789999999999999753 2 4478887764
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=167.84 Aligned_cols=223 Identities=14% Similarity=0.053 Sum_probs=153.3
Q ss_pred hhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc--------
Q 019309 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL-------- 91 (343)
Q Consensus 22 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~-------- 91 (343)
...+.+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+.....+ ...++.++.+|+.+..
T Consensus 22 ~~~~~~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 22 PQSASLEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Confidence 34455678999999999999999999999999 999999885322111111111 1246888999999863
Q ss_pred ----cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc--CC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 ----LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ----~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~--~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+.++|+|||+||...... ...+....++.|+.++..+++++... +. ++|++||...+..
T Consensus 101 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------- 170 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK---------- 170 (283)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC----------
Confidence 236999999999654321 23455678899999999999999875 44 9999999876521
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC-------CCccHHHHHHHHHHc--CCC
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI-------DDGRVVSNFIAQALR--GEP 228 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~-------~~~~~~~~~~~~~~~--~~~ 228 (343)
...+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++.... .....-......... ..+
T Consensus 171 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (283)
T 1g0o_A 171 -----AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP 245 (283)
T ss_dssp -----SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC
Confidence 1112467999999999999988865 48999999999998863110 000000111111111 111
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
...+.+++|+|++++.++.... +..+++.++.
T Consensus 246 ---------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 246 ---------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp ---------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ---------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 1136789999999999997542 3466776653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=170.46 Aligned_cols=219 Identities=15% Similarity=0.106 Sum_probs=156.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
...+|++|||||+|+||+++++.|.++| ++|++++|+............ ...++.++.+|+.|+..
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999 999999985322111111111 13578899999998732
Q ss_pred CCCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN--------------- 152 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC---------------
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC---------------
Confidence 27999999999754322 234556788999999999999874 4455 999999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... .............+ ...+
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~p---------~~r~ 219 (256)
T 3gaf_A 153 -TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV---LTPEIERAMLKHTP---------LGRL 219 (256)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH---CCHHHHHHHHTTCT---------TSSC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc---cCHHHHHHHHhcCC---------CCCC
Confidence 33345679999999999999988764 79999999999987631100 00122222222221 1246
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
.+++|+|++++.++.... +..+++.+|...++
T Consensus 220 ~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 220 GEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred CCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 789999999999997543 55888888876654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=172.79 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=152.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------c-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------L- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+..........+. ...++.++.+|+.|+. +
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 999999985322111111111 1246888999999862 1
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ..++....++.|+.++.++++++. +.+. ++|++||...+.
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 151 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------------- 151 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------------
Confidence 47999999999653211 233456788999999999988884 4555 999999987763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+.+.++.+. |+++.+++|+.+.++..... ........+....... ...
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 220 (260)
T 2ae2_A 152 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC---------ALR 220 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS---------TTC
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC---------CCC
Confidence 22334679999999999999988764 79999999999987631100 0000011111222211 112
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++++|+|++++.++.... +..+++.++..+
T Consensus 221 ~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 221 RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 47899999999999997532 447778776544
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=169.82 Aligned_cols=215 Identities=15% Similarity=0.069 Sum_probs=143.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
|..+++||||||+|+||++++++|+++| ++|+++.+......+.+...+ ...++.++.+|+.|...
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999 999877432211111211111 13478899999998632
Q ss_pred -CCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc-------CC-eEEEEeCCcccCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV-------GA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~-------~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
.++|+|||+||...... ..++....++.|+.++..+++++... +. +||++||...+..
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 173 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG-------- 173 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC--------
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC--------
Confidence 26999999999754211 23445678899999999998887643 23 8999999877531
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.......|+.+|...|.+++.++.+. |+++..++||.|.++..... .............
T Consensus 174 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~-------- 235 (272)
T 4e3z_A 174 -------SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG---GLPDRAREMAPSV-------- 235 (272)
T ss_dssp -------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------CC--------
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc---CChHHHHHHhhcC--------
Confidence 11123569999999999999888765 89999999999998753210 1111111111111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
....+.+++|+|++++.++.... +..+++.+|
T Consensus 236 -~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 236 -PMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 12235679999999999997543 447787765
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=165.12 Aligned_cols=206 Identities=12% Similarity=-0.007 Sum_probs=143.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 93 (343)
|++|+||||||+|+||+++++.|+++|. ++|++++|..... +.+... ...++.++.+|+.+... .
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVG 78 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH-HHHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999986 7899999854322 222222 23578999999998631 1
Q ss_pred --CCCEEEEecCCCC-cc----ccccChHHHHHHHHHHHHHHHHHHHHc----------C-----C-eEEEEeCCcccCC
Q 019309 94 --EVDQIYHLACPAS-PI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----------G-----A-RILLTSTSEVYGD 150 (343)
Q Consensus 94 --~~d~vi~~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~----------~-----~-r~i~~SS~~v~~~ 150 (343)
++|+||||||... .. ....+....++.|+.++..+++++... + . +||++||...+..
T Consensus 79 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 158 (250)
T 1yo6_A 79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158 (250)
T ss_dssp GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred CCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccC
Confidence 7999999998654 11 123345677899999999988877543 3 4 9999999877643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE 227 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
... +. .+..+...|+.+|...|.+++.++.+. |+++.+++|+++.++....
T Consensus 159 ~~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------------- 212 (250)
T 1yo6_A 159 DNT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK----------------- 212 (250)
T ss_dssp TCC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------
T ss_pred Ccc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----------------
Confidence 210 11 222455689999999999999988775 8999999999987764100
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcCC---CcceEecCCCcc
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNPGEF 271 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~ 271 (343)
..+++++|+|++++.++.... .|.|....+..+
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 248 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPY 248 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEEC
T ss_pred -----------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCC
Confidence 135788999999999998764 566665544443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=166.96 Aligned_cols=213 Identities=14% Similarity=0.072 Sum_probs=148.6
Q ss_pred cCCCEEEEEcCch-hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+| -||.+++++|.++| ++|++++|......+....+. ...++.++.+|+.|...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4689999999998 49999999999999 999999985432222222221 12478999999998732
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-----~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+||...... ...+....++.|+.++..+++++... +. ++|++||...+.
T Consensus 99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 166 (266)
T 3o38_A 99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR------------ 166 (266)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC------------
T ss_pred hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC------------
Confidence 26899999999654322 22345567899999999999887653 44 899999987762
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.+.++..... .......... .....
T Consensus 167 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~---------~~~~~ 230 (266)
T 3o38_A 167 ----AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT---SSSELLDRLA---------SDEAF 230 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------CCTT
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc---CcHHHHHHHH---------hcCCc
Confidence 3344577999999999999988876 589999999999988642111 0011111111 11122
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
..+.+++|+|++++.++.... +..+++.+|
T Consensus 231 ~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 231 GRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 347889999999999997543 446777765
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=167.57 Aligned_cols=223 Identities=15% Similarity=0.021 Sum_probs=152.4
Q ss_pred hhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc---------
Q 019309 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL--------- 92 (343)
Q Consensus 22 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------- 92 (343)
+....+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+.. ..+ ..++.++.+|++|+..
T Consensus 22 m~~~~l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 22 MNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAA-TKI-GCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp -----CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHH-HHH-CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HHc-CCcceEEEecCCCHHHHHHHHHHHH
Confidence 33344578999999999999999999999999 99999998532222111 222 2478899999998732
Q ss_pred ---CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|++||+||...... ..++....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 99 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~----------- 167 (277)
T 3gvc_A 99 AAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV----------- 167 (277)
T ss_dssp HHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-----------
Confidence 26999999999754321 2345567889999999998888753 444 899999987653
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC---
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP--- 234 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 234 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.++++.. ...... ..+........
T Consensus 168 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~--------~~~~~~-~~~~~~~~~~~~~~ 233 (277)
T 3gvc_A 168 -----AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ--------QTAMAM-FDGALGAGGARSMI 233 (277)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHHTC-C------CCHHHHH
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH--------HHhhhc-chhhHHHHhhhhhh
Confidence 3334567999999999999988876 589999999999988631 110000 00000000000
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
......+.+++|+|++++.++.... +..+++.+|...+
T Consensus 234 ~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 234 ARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred hccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 0011246789999999999997543 4578888776543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=162.80 Aligned_cols=214 Identities=16% Similarity=0.074 Sum_probs=149.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~v 98 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.. .+.......++.++.+|+.|+. +.++|+|
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l 78 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINES----KLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL 78 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHH----HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHH----HHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence 357899999999999999999999999 99999998532 2221111237889999999863 3479999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.. ...+
T Consensus 79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------~~~~ 143 (246)
T 2ag5_A 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVK---------------GVVN 143 (246)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB---------------CCTT
T ss_pred EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcC---------------CCCC
Confidence 99999654322 123445678899999999888875 3455 9999999876531 1113
Q ss_pred CCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 170 RSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
...|+.+|...|.+.+.++.+. |+++.++||++++++...... ...............+ ...+.++
T Consensus 144 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 214 (246)
T 2ag5_A 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK---------TGRFATA 214 (246)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT---------TSSCEEH
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC---------CCCCCCH
Confidence 4679999999999999988764 899999999999987411000 0000111222222111 1136899
Q ss_pred HHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 245 SDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+|+|++++.++.... +..+++.++.
T Consensus 215 ~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 215 EEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred HHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 999999999997542 4467776653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=166.61 Aligned_cols=208 Identities=15% Similarity=0.080 Sum_probs=148.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||++++++|.++| ++|++++|...... .....+. ..+.++.+|+.|+.. .+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 81 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGK-AMAAELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGG 81 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHhh-cCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999 99999998532211 1111111 247889999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ...+....++.|+.++..+.++ +++.+. ++|++||...+.
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (260)
T 1nff_A 82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA---------------- 145 (260)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC----------------
Confidence 999999999654321 2334567889999999655554 455666 999999998763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...|.+.+.++.+ .|+++.++||+.++++..... ...+. ......+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~----~~~~~~~~ 207 (260)
T 1nff_A 146 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--------------PEDIF----QTALGRAA 207 (260)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--------------CTTCS----CCSSSSCB
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc--------------hhhHH----hCccCCCC
Confidence 2223467999999999999988876 589999999999998752210 00000 00112468
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+++|+|++++.++.... +..+++.++...
T Consensus 208 ~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 208 EPVEVSNLVVYLASDESSYSTGAEFVVDGGTVA 240 (260)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 89999999999997542 447888877543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=172.35 Aligned_cols=224 Identities=15% Similarity=0.059 Sum_probs=143.9
Q ss_pred cCCCCCCChhhhhhhc--cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEccc
Q 019309 11 TKPPPLPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDV 87 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~ 87 (343)
+.+..+++|..+..++ ..+|+||||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|+
T Consensus 11 ~~~~~~~~~~~m~~~m~~l~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv 89 (301)
T 3tjr_A 11 TLEAQTQGPGSMDGFLSGFDGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDV 89 (301)
T ss_dssp -------------CCCCCSTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred chhhcccCCccchhHHhccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccC
Confidence 3344444444444332 367899999999999999999999999 999999985322211111111 134788999999
Q ss_pred CCccc------------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC-C-eEEEEeCC
Q 019309 88 TEPLL------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTS 145 (343)
Q Consensus 88 ~~~~~------------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~-~-r~i~~SS~ 145 (343)
+|... .++|+||||||...... ..++....++.|+.++..+++++. +.+ . ++|++||.
T Consensus 90 ~d~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 169 (301)
T 3tjr_A 90 RHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF 169 (301)
T ss_dssp TCHHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence 98732 27999999999764322 233456788999999999998874 344 3 89999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHH
Q 019309 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQ 222 (343)
Q Consensus 146 ~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~ 222 (343)
..+. +..+...|+.+|...+.+.+.++.+. |+++..++||.|.++. .......
T Consensus 170 ~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~--------~~~~~~~ 225 (301)
T 3tjr_A 170 AGLV----------------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL--------VSNSERI 225 (301)
T ss_dssp GGTS----------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH--------HHHHHHH
T ss_pred hhcC----------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc--------ccccccc
Confidence 8763 33345679999999999998888764 7999999999887753 1111000
Q ss_pred -----HHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 223 -----ALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 223 -----~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
.....+...++.......+++++|+|++++.+++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 226 RGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp C----------------------CCCHHHHHHHHHHHHHHTC
T ss_pred cchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 0001111111222234568999999999999999754
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=167.72 Aligned_cols=217 Identities=13% Similarity=0.025 Sum_probs=154.2
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL-----------I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~-----------~ 93 (343)
.+.+|++|||||+|+||.++++.|.++| ++|++++|.. ...+...... ...++.++.+|+.|... .
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999999 9999998642 1111111111 12468899999998632 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------------- 170 (273)
T 3uf0_A 106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ--------------- 170 (273)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC---------------
Confidence 7999999999764322 23345678899999999998877 34555 899999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++...... .............+ ...+
T Consensus 171 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p---------~~r~ 238 (273)
T 3uf0_A 171 -GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR--ADDERAAEITARIP---------AGRW 238 (273)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH--TSHHHHHHHHHHST---------TSSC
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc--cCHHHHHHHHhcCC---------CCCC
Confidence 3334567999999999999998877 5899999999999987521100 00112222222211 1236
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|+|++++.++.... +..+++.+|...
T Consensus 239 ~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 239 ATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 788999999999997543 457888877544
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=166.32 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=154.4
Q ss_pred hhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------
Q 019309 21 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------ 92 (343)
Q Consensus 21 ~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------ 92 (343)
.+..+.+.+|++|||||+|+||.++++.|.++| ++|++++|......+.+...+ ...++.++.+|+.|...
T Consensus 20 ~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 20 HMTALPLTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp ----CTTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred cccccCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 344555678999999999999999999999999 999998874322222222221 12478899999998732
Q ss_pred ------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||...... ..++....++.|+.++..+++++. +.+. +||++||...+.
T Consensus 99 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 170 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM-------- 170 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC--------
Confidence 26999999999764322 234556788999999999988873 3444 999999987652
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++... .... .......+
T Consensus 171 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~----~~~~---~~~~~~~p------ 229 (269)
T 4dmm_A 171 --------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS----ELAA---EKLLEVIP------ 229 (269)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC----HHHH---HHHGGGCT------
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc----cccH---HHHHhcCC------
Confidence 2233467999999999999888875 4899999999999987521 1111 22222211
Q ss_pred CceeEeeeehHHHHHHHHHHHhcC-C----CcceEecCCCcc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGE-N----TGPVNIGNPGEF 271 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~-~----~~~~~~~~~~~~ 271 (343)
...+.+++|+|++++.++..+ . +..+++.+|..+
T Consensus 230 ---~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 230 ---LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp ---TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred ---CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 123678899999999999863 2 457888877654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=166.18 Aligned_cols=215 Identities=14% Similarity=0.118 Sum_probs=147.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+....++.++.+|+.|+. ..+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSAR 105 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999 9999999853221111112211226888899999863 236
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcC-----CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-----ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~-----~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+|+|||+||..... ...++....++.|+.++..+++++. +.+ .+||++||...+..
T Consensus 106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~----------- 174 (276)
T 2b4q_A 106 LDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA----------- 174 (276)
T ss_dssp CSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC-----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC-----------
Confidence 99999999965432 1223456788999999988777664 333 48999999887632
Q ss_pred CCCCCCCCCC-chHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 162 GNVNPIGVRS-CYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 162 ~~~~~~~~~~-~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
..... .|+.+|...|.+.+.++.+. |+++.+++|+.+.++... ................+
T Consensus 175 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p------- 238 (276)
T 2b4q_A 175 -----MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR----HIANDPQALEADSASIP------- 238 (276)
T ss_dssp -----CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH----HHHHCHHHHHHHHHTST-------
T ss_pred -----CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh----hcchhHHHHHHhhcCCC-------
Confidence 11223 69999999999999888764 899999999999887521 11111111111100111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
...+.+++|+|++++.++.... +..+++.++.
T Consensus 239 ~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 1237889999999999997542 4467776654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=169.93 Aligned_cols=244 Identities=16% Similarity=0.097 Sum_probs=154.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc-chhhh---c--CCCceEEEEcccCCccc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD-NLKKW---I--GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~---~--~~~~~~~~~~d~~~~~~-------- 92 (343)
+.+|++|||||+|+||.++++.|+++| ++|++..|+...+.. .+... . ...++.++.+|++|+..
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~ 81 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQI 81 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 467899999999999999999999999 999999886433322 11111 1 12468999999998632
Q ss_pred ----CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 93 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 ----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+||||||...... ..++....+++|+.++..+++++ ++.+. ++|++||...+..
T Consensus 82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~--------- 152 (324)
T 3u9l_A 82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG--------- 152 (324)
T ss_dssp HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC---------
Confidence 27999999999653221 23345667899999999999988 56666 8999999887631
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC---ccHHHHHHHHHHcCCCeEEec
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD---GRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (343)
.......|+.+|...|.+.+.++.+ .|+++.+++||.+.++...... ....... .............
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 225 (324)
T 3u9l_A 153 ------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQ-AEYEAGPNAGLGE 225 (324)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHH-HHHHHTTTTTHHH
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHH-HhhccccccCCHH
Confidence 1222357999999999999998877 5899999999999865422110 0001111 1111111000000
Q ss_pred CCce-----eEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccC-------HHHHHHHHHHHhCCC
Q 019309 234 PGTQ-----TRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT-------MLELAETVKELINPG 287 (343)
Q Consensus 234 ~~~~-----~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s-------~~e~~~~i~~~~g~~ 287 (343)
+-.. ..+..+++|+|++++.+++.+. ...+.+.++.... ..++.+.+.+.+|.+
T Consensus 226 ~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~g~~ 293 (324)
T 3u9l_A 226 EIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGADVGFSVLDRLRAEMLHRVGLS 293 (324)
T ss_dssp HHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHHHHHHHHHHHHHHHHHHHcChH
Confidence 0000 0112688999999999999874 2334444444445 334444445555543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=163.94 Aligned_cols=215 Identities=11% Similarity=-0.015 Sum_probs=153.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|+++||||+|+||+++++.|.++| ++|++++|+............ ...++.++.+|+.|+.. .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 999999985322111111111 12478899999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||...... ..++....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (247)
T 3lyl_A 82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA--------------- 146 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------------
Confidence 6899999999764322 2344567889999999998887643 444 899999987763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.+.++..... ............ ....+
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~---------~~~~~ 212 (247)
T 3lyl_A 147 -GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL----TDEQKSFIATKI---------PSGQI 212 (247)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS----CHHHHHHHHTTS---------TTCCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc----cHHHHHHHhhcC---------CCCCC
Confidence 2334467999999999999888876 479999999999998763321 112222222211 12347
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|+|++++.++.... +..+++.++..+
T Consensus 213 ~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 213 GEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred cCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 899999999999997543 457888777544
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=165.35 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=146.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|...... .....+ ..++.++.+|+.++.. .+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGA-ATAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHh-CCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 99999998532111 111111 2368889999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHH----HHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~----l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ..++....++.|+.++.. ++..+++.+. +||++||...+.
T Consensus 80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 143 (254)
T 1hdc_A 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------------- 143 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------------
Confidence 999999999654211 223456778999988874 4555566666 999999988763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+. |+++.++||++++++.. .. . ................+.
T Consensus 144 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~----~-~~~~~~~~~~~~p~~~~~ 210 (254)
T 1hdc_A 144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT--------AE----T-GIRQGEGNYPNTPMGRVG 210 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HH----H-TCCCSTTSCTTSTTSSCB
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc--------cc----c-chhHHHHHHhcCCCCCCC
Confidence 22334679999999999999888763 79999999999988631 11 1 000000000101112366
Q ss_pred -ehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 243 -YVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 243 -~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
+++|+|++++.++.... +..+++.++..
T Consensus 211 ~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 211 NEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp -CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 89999999999997542 44677776643
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=165.80 Aligned_cols=221 Identities=12% Similarity=0.053 Sum_probs=146.4
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+.+|++|||||+|+||.+++++|.++| ++|++++|+..... .+...+ ...+.++.+|+.+...
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRDKAGAE-RVAGEI-GDAALAVAADISKEADVDAAVEAALSKF 81 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHH-CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHH-HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999 99999998532221 122222 2478999999998732
Q ss_pred CCCCEEEEecCCCCc-cc----cccChHHHHHHHHHHHHHHHHHHHHc---------CCeEEEEeCCcccCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAKRV---------GARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---------~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
.++|+|||+||.... .. ..++....++.|+.++..+++++... +.++|++||...+.
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------- 152 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR--------- 152 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS---------
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC---------
Confidence 269999999996542 11 22345567899999988888777432 22699999987652
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+ .++++..++|+.+.++................ ....
T Consensus 153 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~ 216 (261)
T 3n74_A 153 -------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKK---------FRDS 216 (261)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHH---------Hhhc
Confidence 3334467999999999999998876 48999999999998875221100000011111 1111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
.....+++++|+|++++.++.... +..+++.++..++.
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccCC
Confidence 122357899999999999996433 45788888876654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-22 Score=167.40 Aligned_cols=215 Identities=14% Similarity=0.053 Sum_probs=147.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+||||||+|+||+++++.|+++| ++|++++|+...............++.++.+|+.++.. ..
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999 99999998532211111111112478999999998632 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ...+....++.|+.++..+.++ +++.+. +||++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 147 (251)
T 1zk4_A 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------------- 147 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc---------------
Confidence 999999998654221 2234456789999877665554 445553 899999998764
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHH-----HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHR-----QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...|.+++.++. ..++++.++||++++++....... ...... ..... ...
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~----~~~~~~-~~~~~-------~~~ 214 (251)
T 1zk4_A 148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG----AEEAMS-QRTKT-------PMG 214 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT----HHHHHT-STTTC-------TTS
T ss_pred -CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc----hhhhHH-HhhcC-------CCC
Confidence 223346799999999999988775 347999999999999874221100 011110 11111 112
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.+++++|+|++++.++.... +..+++.++..
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 215 HIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 47899999999999997542 44778877643
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=163.39 Aligned_cols=213 Identities=13% Similarity=-0.006 Sum_probs=148.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|... ......+.. ..++.++.+|+.|+.. .
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999 99999998643 111122111 2368889999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||...... ...+....++.|+.++..+.++ +++.+. ++|++||...+.
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 143 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV--------------- 143 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc---------------
Confidence 7999999999654221 2234456789999866665554 456666 999999998763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH---HHH---H----HHHHcCCCeEE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV---SNF---I----AQALRGEPLTV 231 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~---~~~---~----~~~~~~~~~~~ 231 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.++++... ... ... . ..... .
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~-~---- 213 (255)
T 2q2v_A 144 -GSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ----KQIDDRAANGGDPLQAQHDLLA-E---- 213 (255)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH----HHHHHHHHHTCCHHHHHHHHHT-T----
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh----hhcccccccccchHHHHHHHHh-c----
Confidence 22234679999999999999988774 799999999999886411 111 000 0 11101 1
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
......+++++|+|++++.++.... +..+++.++..
T Consensus 214 ---~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 214 ---KQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp ---TCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ---cCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCcc
Confidence 1112358899999999999987542 44777777643
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=164.52 Aligned_cols=217 Identities=17% Similarity=0.073 Sum_probs=149.0
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCccc--------
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~-------- 92 (343)
+...+.+|++|||||+|+||+++++.|.++| ++|++++|+..........+ .....+.++.+|+.++..
T Consensus 15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp --CCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3444578999999999999999999999999 99999998532211111111 012467889999998632
Q ss_pred ----CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCc-ccCCCCCCCCCC
Q 019309 93 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE-VYGDPLIHPQPE 158 (343)
Q Consensus 93 ----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~-v~~~~~~~~~~e 158 (343)
.++|+|||+||...... ...+....++.|+.++..+++++. +.+. ++|++||.. .+
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 163 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE---------- 163 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC----------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc----------
Confidence 26999999999654322 123345678899999999888773 4455 999999987 32
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEec
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQK 233 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 233 (343)
.+..+...|+.+|...+.+.+.++.+ .|+++.+++|+++.++... ... ...........+.
T Consensus 164 ------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~---- 229 (267)
T 1vl8_A 164 ------VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIPL---- 229 (267)
T ss_dssp ------CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCTT----
T ss_pred ------cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc----ccccChHHHHHHHhhCCC----
Confidence 12233467999999999999988876 4899999999999886421 111 1122222222111
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+++++|+|++++.++.... +..+.+.++.
T Consensus 230 -----~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 230 -----GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp -----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -----CCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCC
Confidence 136789999999999997532 3466666653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=168.40 Aligned_cols=214 Identities=12% Similarity=-0.007 Sum_probs=147.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 92 (343)
.+++|+||||||+|+||+++++.|+++| ++|++++|+..........+.. ..++.++.+|+.|...
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999 9999988743211111111111 2468889999998632
Q ss_pred CCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||..... ....+....++.|+.++.++++++. +.+. +||++||...+.
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 185 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------------- 185 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc--------------
Confidence 3699999999965422 1233456778999999777777664 4565 999999987653
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||+.+.++..... ............+ ...
T Consensus 186 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~~ 250 (285)
T 2c07_A 186 --GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI----SEQIKKNIISNIP---------AGR 250 (285)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C----CHHHHHHHHTTCT---------TSS
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc----CHHHHHHHHhhCC---------CCC
Confidence 12234679999999999998888664 89999999999998753211 1122222222211 113
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++++|+|++++.++.... +..+++.++.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 7899999999999997532 4467777654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=167.38 Aligned_cols=210 Identities=11% Similarity=0.042 Sum_probs=144.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhc--CCCceEE-EEcccCCcc------------c
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWI--GHPRFEL-IRHDVTEPL------------L 92 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~--~~~~~~~-~~~d~~~~~------------~ 92 (343)
+|+|+||||+|+||++++++|+++| ++|+++ .|+.... +.+...+ ...++.. +.+|+.+.. +
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHYGQNREKA-EEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESSCHHHH-HHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHH-HHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999 999988 6642211 1111111 1234566 899999863 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHH----HHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~----l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++.. ++..+++.+. +||++||...+.
T Consensus 79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 144 (245)
T 2ph3_A 79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGIL-------------- 144 (245)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhcc--------------
Confidence 37999999998654221 233456778999999544 4555566676 999999986542
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...|.+.+.++.+. ++++.++||+.++++..... ............+ ...
T Consensus 145 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~~ 209 (245)
T 2ph3_A 145 --GNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL----PQEVKEAYLKQIP---------AGR 209 (245)
T ss_dssp --CCSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----CHHHHHHHHHTCT---------TCS
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc----CHHHHHHHHhcCC---------CCC
Confidence 11234679999999999999888765 89999999999988742211 1122222222211 124
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++++|+|++++.++..+. +..|++.++.
T Consensus 210 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 7899999999999997542 4467777653
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=163.22 Aligned_cols=217 Identities=14% Similarity=0.079 Sum_probs=153.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|+++ .|......+...... ...++.++.+|++|+..
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 998886 653221111111111 12478899999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||...... ...+....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 146 (258)
T 3oid_A 81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-------------- 146 (258)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC--------------
Confidence 36899999998543222 22344567899999999998887 34455 999999988763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++....... ............+. ..
T Consensus 147 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~---------~r 213 (258)
T 3oid_A 147 --YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN--REDLLEDARQNTPA---------GR 213 (258)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT--HHHHHHHHHHHCTT---------SS
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc--CHHHHHHHHhcCCC---------CC
Confidence 33445679999999999999988764 7999999999998875322111 11222222222211 23
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+.+++|+|++++.++.... +..+++.+|...
T Consensus 214 ~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 6789999999999998654 457888877544
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=164.83 Aligned_cols=216 Identities=14% Similarity=0.049 Sum_probs=154.1
Q ss_pred CCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 92 (343)
.+|++|||||+ |+||+++++.|.++| ++|++++|+. ...+.+..+.. .....++.+|+.++. +
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999 999999999999999 9999999864 22222222111 123478899999863 1
Q ss_pred CCCCEEEEecCCCCc-----c----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASP-----I----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~-----~----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|+|||+||.... . ....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence 268999999996542 1 223455678899999999999999865 23899999987753
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|++++++..... .....+........++
T Consensus 155 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~p~-------- 219 (265)
T 1qsg_A 155 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--KDFRKMLAHCEAVTPI-------- 219 (265)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--TTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc--cccHHHHHHHHhcCCC--------
Confidence 22334679999999999999988775 79999999999999863221 1122233322222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
..+.+++|+|++++.++.... +..+++.++..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 136789999999999987533 4477888775543
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=162.45 Aligned_cols=192 Identities=14% Similarity=0.065 Sum_probs=142.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-------eEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------ 92 (343)
++|+||||||+|+||+++++.|+++| + +|++++|+.... +.+...+ ...++.++.+|+.++..
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G-~~~~~~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRTAADL-EKISLECRAEGALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESCHHHH-HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhc-CcccccceEEEEEeCCHHHH-HHHHHHHHccCCeeeEEEecCCCHHHHHHHHH
Confidence 36889999999999999999999999 7 899998853211 1111111 12468899999998631
Q ss_pred ------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||...... ...+....++.|+.++..+++++. +.+. +||++||...+.
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 150 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK-------- 150 (244)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC--------
Confidence 26999999999654321 233456778999999999988874 3455 999999998874
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...|.+++.++.+ .|+++.++||++++++....... .
T Consensus 151 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~------- 202 (244)
T 2bd0_A 151 --------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-------------E------- 202 (244)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-------------T-------
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc-------------c-------
Confidence 2334467999999999999887754 47999999999999986321100 0
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
. ...+++++|+|++++.++..+.
T Consensus 203 ~--~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 203 M--QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp T--GGGSBCHHHHHHHHHHHHTSCT
T ss_pred c--cccCCCHHHHHHHHHHHHhCCc
Confidence 0 1257899999999999998765
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=166.52 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=155.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------ccchhh---hc--CCCceEEEEcccCCccc-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--------KDNLKK---WI--GHPRFELIRHDVTEPLL- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~---~~--~~~~~~~~~~d~~~~~~- 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|..... .+.+.. .+ ...++.++.+|++|+..
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 367999999999999999999999999 9999999853211 111111 11 13478899999998732
Q ss_pred -----------CCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCC
Q 019309 93 -----------IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPL 152 (343)
Q Consensus 93 -----------~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~ 152 (343)
.++|++||+||..... ....+....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 163 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS--- 163 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC---
Confidence 2799999999965422 223445677899999999999886 34455 999999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
+..+...|+.+|...+.+.+.++.+ +|+++..++|++|+++..... .....+.........
T Consensus 164 -------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~~~~ 227 (281)
T 3s55_A 164 -------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHND---FVFGTMRPDLEKPTL 227 (281)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSH---HHHHC-------CCH
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccch---hhhccccccccccch
Confidence 3334567999999999999999876 489999999999999864210 000000000000000
Q ss_pred -----EEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 230 -----TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 230 -----~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
.+.........+.+++|+|++++.++.... +..+++.+|...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 228 KDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred hHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 000001112458899999999999997643 4578888876554
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=167.81 Aligned_cols=211 Identities=10% Similarity=-0.012 Sum_probs=146.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+ ....+ ..++.++.+|++|+.. .+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKE-IAADL-GKDVFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-HHHHH-CSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-HHHHh-CCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999 999999885322111 11112 2478899999998732 36
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||..... ....++...++.|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~---------------- 165 (266)
T 3grp_A 102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV---------------- 165 (266)
T ss_dssp CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--------------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC----------------
Confidence 99999999965422 223455677899999966666555 44565 999999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++|+.+.++..... ............+ ...+.
T Consensus 166 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~p---------~~r~~ 232 (266)
T 3grp_A 166 GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL----NEKQKEAIMAMIP---------MKRMG 232 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC----CHHHHHHHHTTCT---------TCSCB
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc----CHHHHHHHHhcCC---------CCCCc
Confidence 22334679999999999998888764 79999999999987642111 1122222333222 12367
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++|+|++++.++.... +..+++.+|.
T Consensus 233 ~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 233 IGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 88999999999997543 4477777664
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=163.85 Aligned_cols=208 Identities=15% Similarity=0.106 Sum_probs=148.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCCCC-CccchhhhcCCCceEEEEcccCCc-cc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTG-SKDNLKKWIGHPRFELIRHDVTEP-LL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~-~~----------- 92 (343)
+.+|+|+||||+|+||+++++.|+++| ++ |++++|+... ..+.+.......++.++.+|+.|+ ..
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G-~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence 467899999999999999999999999 86 8888885421 111122222234688999999986 31
Q ss_pred -CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~--------~~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||.. ...+....++.|+.++..+++++... +.++|++||...+.
T Consensus 82 ~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 143 (254)
T 1sby_A 82 LKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------- 143 (254)
T ss_dssp HSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred cCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc--------------
Confidence 2699999999864 24567889999999999999988632 23799999998763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++....... +. ...+......
T Consensus 144 --~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~------------ 208 (254)
T 1sby_A 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNS-WLDVEPRVAELLLS------------ 208 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCC-GGGSCTTHHHHHTT------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccch-hhhhhHHHHHHHhc------------
Confidence 2233467999999999999888765 58999999999998864211000 00 0001111111
Q ss_pred EeeeehHHHHHHHHHHHhcCCC-cceEecCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGENT-GPVNIGNP 268 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~~-~~~~~~~~ 268 (343)
..+.+++|+|++++.+++.... ..|++.++
T Consensus 209 ~~~~~~~dvA~~i~~~~~~~~~G~~~~v~gG 239 (254)
T 1sby_A 209 HPTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 1234899999999999986554 46777766
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=164.92 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=158.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+|++|||||+|+||.++++.|.++| ++|++++|+..... .+...+ ..++.++.+|+.|... .++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIA-RIREEF-GPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 99999998532211 111112 2478899999998732 369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|++||+||...... ..++....++.|+.++..+++++... +.++|++||...+. +..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 147 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------GHP 147 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------BCT
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------CCC
Confidence 99999999764322 33455678899999999999999764 23899999988763 333
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
+...|+.+|...+.+.+.++.+. |+++..++||.+.++...... ......+........+. ..+.+
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~~ 218 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM---------KRNGT 218 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT---------SSCBC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC---------CCCcC
Confidence 45679999999999999988764 899999999999988543211 11112222222221111 23568
Q ss_pred hHHHHHHHHHHHhcCC---CcceEecCCCccCHHH
Q 019309 244 VSDMVDGLIRLMEGEN---TGPVNIGNPGEFTMLE 275 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~~~~~~~~~~~s~~e 275 (343)
++|+|++++.++.... +..+++.++...++.+
T Consensus 219 pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 219 ADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp HHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBCC
T ss_pred HHHHHHHHHHHcCcCcCccCCEEEECCCccccCcC
Confidence 8999999999987532 4578888887666543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=165.45 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=148.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------c-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------L- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.++. +
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 999999985322111111111 1246888999999862 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 163 (273)
T 1ae1_A 98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS-------------- 163 (273)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS--------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC--------------
Confidence 57999999999654221 223456678899999999988873 4455 999999998874
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccH--HHHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRV--VSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.++++......... ............+ .
T Consensus 164 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p---------~ 232 (273)
T 1ae1_A 164 --ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP---------M 232 (273)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---------T
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC---------C
Confidence 22334679999999999999888764 899999999999988532110000 0111122221111 1
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
..+.+++|+|++++.++.... +..+++.++..
T Consensus 233 ~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 233 GRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 136789999999999986532 44777777643
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=164.16 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=146.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcC--CCceEEEEcccCCccc------------C
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIG--HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 93 (343)
+|+||||||+|+||++++++|+++| ++|+++ .|+... .+.+...+. ..++.++.+|+.++.. .
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G-~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKA-AEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHH-HHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHH-HHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999 999885 663211 111111111 2468889999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||...... ...+....++.|+.++.++++++.+ .+. +||++||...+.
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 143 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI--------------- 143 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC---------------
Confidence 6999999999654321 2234566789999999999888765 355 999999987642
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.++||++++++..... ............+ ...+
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~~~ 209 (244)
T 1edo_A 144 -GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL----GEDMEKKILGTIP---------LGRT 209 (244)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT----CHHHHHHHHTSCT---------TCSC
T ss_pred -CCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc----ChHHHHHHhhcCC---------CCCC
Confidence 1223467999999999998888766 489999999999998642211 1122222222111 1237
Q ss_pred eehHHHHHHHHHHHhcCC-----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN-----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~-----~~~~~~~~~~ 269 (343)
++++|+|++++.++..+. +..+++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 899999999999984332 4467777764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=165.73 Aligned_cols=225 Identities=16% Similarity=0.129 Sum_probs=154.8
Q ss_pred hhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------
Q 019309 20 LRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------- 92 (343)
Q Consensus 20 ~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 92 (343)
+...++.+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+ ....+ ..++.++.+|+.|+..
T Consensus 18 ~~~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 94 (277)
T 4dqx_A 18 LYFQSMDLNQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVR-VANEI-GSKAFGVRVDVSSAKDAESMVEK 94 (277)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred cccccCCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-HHHHh-CCceEEEEecCCCHHHHHHHHHH
Confidence 3345555678999999999999999999999999 999999985322111 11112 2468899999998632
Q ss_pred -----CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCC
Q 019309 93 -----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 -----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
.++|++||+||...... ...+....+++|+.++..+++++. +.+. ++|++||...+.
T Consensus 95 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 165 (277)
T 4dqx_A 95 TTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS--------- 165 (277)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------
Confidence 26999999999654322 223445678899999998888774 4445 899999988763
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEec
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... ................
T Consensus 166 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------ 232 (277)
T 4dqx_A 166 -------AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA------ 232 (277)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS------
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC------
Confidence 33445689999999999999888764 79999999999987531000 0000011111122211
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
....+.+++|+|++++.++.... +..+++.+|..++
T Consensus 233 ---~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 233 ---VMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred ---cccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 12236789999999999997543 4578888776554
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=166.06 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=127.8
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 92 (343)
+...++++|||||+|+||.+++++|.++| ++|++++|+.....+...... ....+.++.+|+.|+..
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999 999999985322211111111 13478899999998732
Q ss_pred -CCCCEEEEecCCCCcc-------ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~-------~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+|||+||..... ...++....++.|+.++..+.+++ ++.+. +||++||...|.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------- 153 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC----------
Confidence 2799999999874211 123344678899999966655554 45555 899999998762
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+...|+.+|...|.+.+.++.+. |+++..++|+.++++..... ....+...+.++.
T Consensus 154 ---------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~--------- 212 (253)
T 3qiv_A 154 ---------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT---TPKEMVDDIVKGL--------- 212 (253)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------------
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc---CcHHHHHHHhccC---------
Confidence 12459999999999999998875 79999999999998753211 0111222222211
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
....+.+++|+|++++.++.... +..|++.++..+
T Consensus 213 ~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 213 PLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQII 251 (253)
T ss_dssp -------CCHHHHHHHHHHSGGGTTCCSCEEEC------
T ss_pred CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeec
Confidence 12235678999999999997543 458888887654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=165.43 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=148.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+||||||+|+||+++++.|+++| ++|++++|.... ..++.++.+|+.|+.. .+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 74 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGS 74 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999999999 999999985432 2467889999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ...+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 138 (264)
T 2dtx_A 75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI---------------- 138 (264)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc----------------
Confidence 999999999654321 2335567889999998888887754 344 999999998763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHH-------H----HHHHHHHcCCCeEEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVV-------S----NFIAQALRGEPLTVQ 232 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~ 232 (343)
+..+...|+.+|...|.+.+.++.+.+ +++.+++|+.+.++... ... . ..........
T Consensus 139 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (264)
T 2dtx_A 139 ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR----KAAELEVGSDPMRIEKKISEWGHEH----- 209 (264)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH----HHHHHHHCSCHHHHHHHHHHHHHHS-----
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh----hhhhcccccCchhhHHHHHHHHhcC-----
Confidence 223446799999999999999988765 89999999998765310 000 0 1111111111
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+++++|+|++++.++.... +..+++.++.
T Consensus 210 ----p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 210 ----PMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGL 246 (264)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 11247899999999999997542 4467777653
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=166.03 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=147.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+.....+. ..++.++.+|+.|+..
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 9999999854220111111111 2468889999998732
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ...+....++.|+.++..+++++. +.+. +||++||...+.
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 147 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------------- 147 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc-------------
Confidence 26999999999654221 233456788999999988888774 4455 999999988763
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHH-c-CCCeEEe-cCCc
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL-R-GEPLTVQ-KPGT 236 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++|+++.++..... ......... . ....... ....
T Consensus 148 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T 1x1t_A 148 ---ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ----ISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHC
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh----hhhhccccCCchHHHHHHHhhccC
Confidence 22334679999999999999888764 79999999999998753211 000000000 0 0000000 0000
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+.+++|+|++++.++.... +..+++.++.
T Consensus 221 p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 221 PSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 11247899999999999997542 4467777653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=165.17 Aligned_cols=222 Identities=12% Similarity=-0.020 Sum_probs=150.5
Q ss_pred hhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc--------
Q 019309 22 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 22 ~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-------- 92 (343)
....|+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+.. ...+.++.+|+.|+..
T Consensus 17 ~~~~m~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp --------CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CcccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 34455678999999999999999999999999 9999999853222211121111 2478899999998732
Q ss_pred ----CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH------cCC-eEEEEeCCcccCCCCCCCCC
Q 019309 93 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~------~~~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||...... ...+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-------- 167 (279)
T 3sju_A 96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-------- 167 (279)
T ss_dssp HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc--------
Confidence 26999999999764322 2234456788999999999998754 455 899999988763
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-------CccHHHHHHHHHHcCC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-------DGRVVSNFIAQALRGE 227 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-------~~~~~~~~~~~~~~~~ 227 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++..... ................
T Consensus 168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (279)
T 3sju_A 168 --------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI 239 (279)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC
T ss_pred --------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC
Confidence 3334467999999999999998876 579999999999987531100 0000112222222221
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+.+++|+|++++.++.... +..+++.+|.
T Consensus 240 ---------p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 240 ---------PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred ---------CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 11246789999999999997543 4477877764
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=165.41 Aligned_cols=209 Identities=20% Similarity=0.123 Sum_probs=149.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
.+|++|||||+|+||+++++.|.++| ++|++++|...... ......+|+.+... .++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~----------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 95 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAG-ARVAVADRAVAGIA----------ADLHLPGDLREAAYADGLPGAVAAGLGRL 95 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECSSCCTTSC----------CSEECCCCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----------hhhccCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999999 99999988543221 11334788887632 379
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||...... ..++....+++|+.++..+++++ ++.+. ++|++||...+. +
T Consensus 96 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 159 (266)
T 3uxy_A 96 DIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR----------------P 159 (266)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------------C
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------C
Confidence 99999999765322 23344567889999999999988 55555 999999987762 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC---CccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID---DGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... ................ ....
T Consensus 160 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------p~~r 230 (266)
T 3uxy_A 160 GPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV---------PLGR 230 (266)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS---------TTSS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC---------CCCC
Confidence 3345679999999999999988765 89999999999987631100 0000011112222211 1234
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
+.+++|+|++++.++.... +..+++.+|..++
T Consensus 231 ~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 231 IAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCCC
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeCC
Confidence 7889999999999997643 4578888776543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-21 Score=164.07 Aligned_cols=211 Identities=15% Similarity=0.093 Sum_probs=149.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec-CCCCCccchhhhcC---CCceEEEEcccCCc----cc------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTGSKDNLKKWIG---HPRFELIRHDVTEP----LL------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~---~~~~~~~~~d~~~~----~~------ 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++| .... .+.+...+. ..++.++.+|+.+. ..
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGA-AQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHH-HHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHH-HHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 467899999999999999999999999 99999998 4211 111111110 24688999999987 32
Q ss_pred ------CCCCEEEEecCCCCcccc----c-----------cChHHHHHHHHHHHHHHHHHHHHc---C-------CeEEE
Q 019309 93 ------IEVDQIYHLACPASPIFY----K-----------YNPVKTIKTNVIGTLNMLGLAKRV---G-------ARILL 141 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~~----~-----------~~~~~~~~~nv~~~~~l~~~a~~~---~-------~r~i~ 141 (343)
.++|+||||||....... . .+....++.|+.++..+++++... + .+||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 269999999996532211 1 344568899999999999998763 2 48999
Q ss_pred EeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHH
Q 019309 142 TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSN 218 (343)
Q Consensus 142 ~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~ 218 (343)
+||...+. +..+...|+.+|...+.+.+.++.+. |+++.+++|+.++++ ... . ..
T Consensus 167 isS~~~~~----------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~--~---~~ 224 (276)
T 1mxh_A 167 LCDAMTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAM--P---QE 224 (276)
T ss_dssp ECCGGGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSS--C---HH
T ss_pred ECchhhcC----------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccC--C---HH
Confidence 99988763 23344679999999999999888765 899999999999998 211 1 12
Q ss_pred HHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 219 FIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.........+. .+.+.+++|+|++++.++.... +..+++.++.
T Consensus 225 ~~~~~~~~~p~--------~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 225 TQEEYRRKVPL--------GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHHTTCTT--------TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 22222222111 1127889999999999997532 3467777664
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-22 Score=169.84 Aligned_cols=213 Identities=15% Similarity=0.070 Sum_probs=149.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.++.. .
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999 999999985322111111111 12468889999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc------CC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~------~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
++|+|||+||...... ...+....++.|+.++..+++++... +. +||++||...+.
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 165 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------- 165 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-------------
Confidence 6999999999654221 22344678899999999999987654 54 899999987652
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH-----------HHHHHHHHcCCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV-----------SNFIAQALRGEP 228 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~ 228 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.+.++... ... ...........
T Consensus 166 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (277)
T 2rhc_B 166 ---GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA----SVREHYSDIWEVSTEEAFDRITARV- 237 (277)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH----HHHHHHHHHHTCCHHHHHHHHHHHS-
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh----hhhhhcccccccchHHHHHHHHhcC-
Confidence 22334679999999999999988764 799999999999886411 111 01111111111
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+++++|+|++++.++..+. +..+++.++.
T Consensus 238 --------p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 238 --------PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 11247899999999999997642 4477777663
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=160.12 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=145.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|+. +.+... ....+.++.+|++|... .+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~----~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 87 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEG-HPLLLLARRV----ERLKAL-NLPNTLCAQVDVTDKYTFDTAITRAEKIYGP 87 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCH----HHHHTT-CCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHh-hcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999 9999999842 222222 23478899999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+||||||...... ...+....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------------- 151 (266)
T 3p19_A 88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK---------------- 151 (266)
T ss_dssp EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------------
Confidence 999999999754322 22344567899999999977666 34555 999999988763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.................. .+ ...++
T Consensus 152 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----~~-------~~r~~ 220 (266)
T 3p19_A 152 TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR----VD-------MGGVL 220 (266)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH----HH-------TTCCB
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc----cc-------ccCCC
Confidence 3334467999999999999988876 4899999999999987532221111111111110 00 11368
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
+++|+|++++.+++.+.
T Consensus 221 ~pedvA~av~~l~~~~~ 237 (266)
T 3p19_A 221 AADDVARAVLFAYQQPQ 237 (266)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 89999999999999876
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=165.91 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=148.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+..........+ ....++.++.+|+.|+..
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999 99999998532211111111 113468899999998732
Q ss_pred -CCCCEEEEecCCCCc-cc----cccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+||.... .. ...+....++.|+.++..+.++ +++.+. ++|++||...+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 157 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------ 157 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc------------
Confidence 269999999996532 11 2234557788999887765554 455565 999999987653
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEecC
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID----DGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||.++++..... ................
T Consensus 158 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 226 (267)
T 1iy8_A 158 ----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------- 226 (267)
T ss_dssp ----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-------
T ss_pred ----CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC-------
Confidence 2233467999999999999888766 489999999999987631100 0000010111111111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
....+.+++|+|++++.++.... +..+++.++..++
T Consensus 227 --p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 227 --PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSAA 266 (267)
T ss_dssp --TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTTB
T ss_pred --CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCcccC
Confidence 11237899999999999997542 4467777765543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=166.18 Aligned_cols=227 Identities=15% Similarity=0.065 Sum_probs=157.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC--------Cccchhhh---c--CCCceEEEEcccCCccc-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG--------SKDNLKKW---I--GHPRFELIRHDVTEPLL- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~~~~~---~--~~~~~~~~~~d~~~~~~- 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|.... ..+.+... + ...++.++.+|++|+..
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 468999999999999999999999999 999999885221 01111111 0 12478999999998732
Q ss_pred -----------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHH----cC-C-eEEEEeCCcccCCCCCCC
Q 019309 93 -----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 93 -----------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~----~~-~-r~i~~SS~~v~~~~~~~~ 155 (343)
.++|++|||||........+++...++.|+.++..+++++.. .+ . ++|++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 279999999997654444556778899999999999988743 33 3 899999987753210
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHH-HcCCCeEE
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQA-LRGEPLTV 231 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~ 231 (343)
.+..+...|+.+|...+.+.+.++.+. |+++..++|+.|.++... .......+... ........
T Consensus 167 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~ 234 (278)
T 3sx2_A 167 ---------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMIN---NEFTREWLAKMAAATDTPGA 234 (278)
T ss_dssp ---------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS---SHHHHHHHHHHHHHCC--CT
T ss_pred ---------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccch---hhhHHHHHhhccchhhhhhh
Confidence 122334579999999999999888764 699999999999998632 11222222211 11111111
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
...... ..+++++|+|++++.++.... +..+++.+|..
T Consensus 235 ~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 235 MGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGFL 276 (278)
T ss_dssp TSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred hhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCcc
Confidence 122222 568899999999999997543 45778877643
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=161.98 Aligned_cols=219 Identities=8% Similarity=-0.020 Sum_probs=152.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+.. ..++.++.+|+.|+.. .
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 9999999853222211111111 2468899999998732 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH-----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~-----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
++|++|||||...... ..++....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 148 (257)
T 3imf_A 83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-------------- 148 (257)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc--------------
Confidence 6999999999543221 233456788999999999998873 3333 899999988763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+ +|+++..++||.+.++...... .....+........ ...
T Consensus 149 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~---------p~~ 216 (257)
T 3imf_A 149 --AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WISEEMAKRTIQSV---------PLG 216 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHHHTTS---------TTC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc-ccCHHHHHHHHhcC---------CCC
Confidence 3334467999999999988877743 4899999999999987532110 00001111111111 112
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
.+.+++|+|++++.++.... +..+++.++..++
T Consensus 217 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 217 RLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 47889999999999997543 4477888776554
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=164.29 Aligned_cols=215 Identities=17% Similarity=0.137 Sum_probs=146.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.... +.+...+ ..++.++.+|+.|+.. .+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAG-QQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHH-HHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999 9999998853211 1111222 2468899999998732 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|+|||+||...... ...+....++.|+.++..+.+++ ++.+.++|++||...+. +
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 144 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------P 144 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------C
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC----------------C
Confidence 899999999654221 22345667889988777666544 44445899999998763 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---h--CCceEEEEeccccCCCCCC-CCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---H--GIQIRIARIFNTYGPRMNI-DDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~--~~~~~i~R~~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
..+...|+.+|...|.+.+.++.+ . |+++.++||++++++.... .... .......... .......
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~----~~~~~~~~~~-----~~~p~~~ 215 (253)
T 1hxh_A 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKG----VSKEMVLHDP-----KLNRAGR 215 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTT----CCHHHHBCBT-----TTBTTCC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchh----hhHHHHhhhh-----ccCccCC
Confidence 234467999999999999888766 3 8999999999999864110 0000 0000011100 0011124
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+.+++|+|++++.++.... +..+++.++.
T Consensus 216 ~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 216 AYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp EECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 7899999999999997642 3466776653
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=164.87 Aligned_cols=216 Identities=8% Similarity=-0.013 Sum_probs=145.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+..........+. ...++.++.+|+.|+..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL 83 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 999999985322111111111 01268899999998631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 149 (260)
T 2z1n_A 84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR-------------- 149 (260)
T ss_dssp TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC--------------
Confidence 14999999999653221 22345677899999986666555 45566 999999998763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCc------cHHHHH-HHHHHcCCCeEEec
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDG------RVVSNF-IAQALRGEPLTVQK 233 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|++++++....... ...... .....
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 218 (260)
T 2z1n_A 150 --PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMA--------- 218 (260)
T ss_dssp --CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-------------------------------
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHH---------
Confidence 22334679999999999998888764 8999999999999886321000 000000 00000
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.......+.+++|+|++++.++.... +..+++.++
T Consensus 219 ~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG 257 (260)
T 2z1n_A 219 SRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGG 257 (260)
T ss_dssp -CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 00011236799999999999997532 346677665
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=165.68 Aligned_cols=221 Identities=13% Similarity=0.037 Sum_probs=155.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 94 (343)
.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.++.. .+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREG-AKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG 85 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999 999999885322111111111 12468889999998732 36
Q ss_pred CCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|++|||||.... ....++....+++|+.++..+++++. +.+. ++|++||...+.
T Consensus 86 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 150 (280)
T 3tox_A 86 LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHT--------------- 150 (280)
T ss_dssp CCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTT---------------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCc---------------
Confidence 9999999996532 11234556788999999999988874 3344 999999987752
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++.....................+ ...+
T Consensus 151 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p---------~~r~ 221 (280)
T 3tox_A 151 AGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA---------LKRI 221 (280)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST---------TSSC
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc---------cCCC
Confidence 122344679999999999999988775 8999999999999986322000001112222222211 1236
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
.+++|+|++++.++.... +..+++.+|..++.
T Consensus 222 ~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 222 ARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred cCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 789999999999997643 45888888866654
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=162.01 Aligned_cols=213 Identities=16% Similarity=0.067 Sum_probs=147.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+++||||+|+||+++++.|.++| ++|++++|......+.....+ ...++.++.+|+.|+..
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999 999999883211111111111 12468889999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||...... ..++....++.|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 146 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVT-------------- 146 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcC--------------
Confidence 26999999999654321 22345677899999976666555 44565 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++|+.+.++......... ........+ ...
T Consensus 147 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~----~~~~~~~~p---------~~~ 211 (246)
T 2uvd_A 147 --GNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENI----KAEMLKLIP---------AAQ 211 (246)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTH----HHHHHHTCT---------TCS
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHH----HHHHHhcCC---------CCC
Confidence 1223467999999999988887765 4899999999999887532211111 111112111 123
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++++|+|++++.++.... +..+++.++.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 7899999999999997542 4467776653
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=161.16 Aligned_cols=213 Identities=16% Similarity=0.126 Sum_probs=144.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC-CCCccchhhhcCCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSKDNLKKWIGHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~ 93 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|.. ....+.+... ..++.++.+|+.|+. +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCchhHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999 9999999854 1111111111 246888999999863 23
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|+|||+||...... ..++....++.|+.++..++++ +++.+. ++|++||...+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL--------------- 146 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------------
Confidence 7999999999654221 2234556789999998877777 555666 999999998774
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.+.++.... ...... ...... .. .....+
T Consensus 147 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~-~~~~~~-~~------~~~~~~ 214 (249)
T 2ew8_A 147 -KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA---SALSAM-FDVLPN-ML------QAIPRL 214 (249)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------C-TT------SSSCSC
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchh---ccccch-hhHHHH-hh------CccCCC
Confidence 22334679999999999999988764 8999999999998875210 000000 000000 00 011247
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.+++|+|++++.++.... +..+++.++.
T Consensus 215 ~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp CCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred CCHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 899999999999997532 4466776653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=167.19 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=149.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~---------- 92 (343)
++.+|++|||||+|+||+++++.|+++| ++|++++|+.....+....+. ...++.++.+|+.|+..
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 999999985322111111111 12368899999998732
Q ss_pred --CCCCEEEEecCCCCccccccChHHHHHHHHHHHH----HHHHHHHHcC---C-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL----NMLGLAKRVG---A-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~----~l~~~a~~~~---~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||... ..+....++.|+.++. .++..+++.+ . ++|++||...+.
T Consensus 83 ~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 145 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM------------- 145 (267)
T ss_dssp HHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC-------------
Confidence 25899999998643 4566788899988554 4555555543 4 899999998764
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHH-----HHhCCceEEEEeccccCCCCCCCCcc-HHHH---HHHHHHcCCCeEEec
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYH-----RQHGIQIRIARIFNTYGPRMNIDDGR-VVSN---FIAQALRGEPLTVQK 233 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~~~~~i~R~~~v~G~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...+.+.+.++ ...|+++.+++||.+.++........ .... +.....
T Consensus 146 ---~~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--------- 213 (267)
T 2gdz_A 146 ---PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIK--------- 213 (267)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHH---------
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHH---------
Confidence 22234579999999999888742 23589999999999987631100000 0000 000000
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccCHHHH
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFTMLEL 276 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s~~e~ 276 (343)
.......+++++|+|++++.++.... +..+++.+++.+++.|+
T Consensus 214 ~~~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 214 DMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HHHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECCC
T ss_pred HHhccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccCc
Confidence 00112347899999999999998654 55889988877766543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=168.93 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=153.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC-Cccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG-SKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
.+|++|||||+|+||.++++.|.++| ++|++++|.... ..+.+...+ ...++.++.+|+.|...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999 999998874211 111111111 12468889999998632
Q ss_pred CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||..... ...++....+++|+.++..+++++...- .++|++||...+.
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~--------------- 191 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ--------------- 191 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc---------------
Confidence 3799999999964321 1234456788999999999999997652 3899999998874
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.|.++....... ....+.. +........+
T Consensus 192 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~--~~~~~~~---------~~~~~p~~r~ 259 (294)
T 3r3s_A 192 -PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDKIPQ---------FGQQTPMKRA 259 (294)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS--CGGGSTT---------TTTTSTTSSC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC--CHHHHHH---------HHhcCCCCCC
Confidence 33344679999999999999988775 8999999999998864110000 0000000 0111122346
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|+|++++.++.... +..+++.+|..+
T Consensus 260 ~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 788999999999997543 558888887654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.17 Aligned_cols=206 Identities=14% Similarity=0.087 Sum_probs=146.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----------cCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----------LIEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~d 96 (343)
|+|++|||||+|+||+++++.|.++| ++|++++|+... ..+.+ ++.++.+|+.+.. ..++|
T Consensus 1 ~~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id 72 (239)
T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLH 72 (239)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999 999999985422 22222 3788899998731 12699
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
++||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+... ..
T Consensus 73 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~ 138 (239)
T 2ekp_A 73 VLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GP 138 (239)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TT
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CC
Confidence 9999998653211 233456788999999988888773 4566 99999999877421 11
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCceeEeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
.+...|+.+|...|.+.+.++.+. |+++.++||+.+.++... ... ...........+ ...+.
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~p---------~~~~~ 205 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTL----PLRQNPELYEPITARIP---------MGRWA 205 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHTCHHHHHHHHTTCT---------TSSCB
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhh----ccccCHHHHHHHHhcCC---------CCCCc
Confidence 344679999999999999888764 899999999999887421 000 112222222111 11367
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+++|+|++++.++.... .| .+++.++
T Consensus 206 ~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 206 RPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 89999999999997532 34 5666665
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=165.69 Aligned_cols=214 Identities=14% Similarity=0.028 Sum_probs=140.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------C
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 93 (343)
.+|++|||||+|+||+++++.|.++| ++|++++|......+.....+ ...++.++.+|+.|+.. .
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 999999863222111111111 12478999999998742 2
Q ss_pred CCCEEEEecCCCC--cc----ccccChHHHHHHHHHHHHHHHHHHHHc----C---C-eEEEEeCCcccCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPAS--PI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G---A-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 94 ~~d~vi~~a~~~~--~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~----~---~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
++|++||+||... .. ...+++...+++|+.++..+++++... + . ++|++||...+.
T Consensus 107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------- 176 (280)
T 4da9_A 107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM---------- 176 (280)
T ss_dssp CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------------
T ss_pred CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc----------
Confidence 6999999999632 11 123445667789999999888877533 2 3 899999987652
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.... ........... . ..
T Consensus 177 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~-~-------~~ 238 (280)
T 4da9_A 177 ------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAA----VSGKYDGLIES-G-------LV 238 (280)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------------
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhh----cchhHHHHHhh-c-------CC
Confidence 2233467999999999999998877 57999999999998875221 11111111111 0 11
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+++.+|..
T Consensus 239 p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 239 PMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp ---CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred CcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 22346789999999999998654 45788877654
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=158.73 Aligned_cols=205 Identities=17% Similarity=0.128 Sum_probs=144.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~ 100 (343)
..+|+||||||+|+||+++++.|.++| ++|++++|+. +..... ..+.++ +|+.+. .+.++|+|||
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~----~~~~~~---~~~~~~-~D~~~~~~~~~~~~~~iD~lv~ 87 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNE----ELLKRS---GHRYVV-CDLRKDLDLLFEKVKEVDILVL 87 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHT---CSEEEE-CCTTTCHHHHHHHSCCCSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCH----HHHHhh---CCeEEE-eeHHHHHHHHHHHhcCCCEEEE
Confidence 478999999999999999999999999 9999999853 222222 256667 898322 1237999999
Q ss_pred ecCCCCccc----cccChHHHHHHHHHHHHHH----HHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 101 LACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 101 ~a~~~~~~~----~~~~~~~~~~~nv~~~~~l----~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
+||...... ...+....++.|+.++..+ +..+++.+. +||++||...+. +..+..
T Consensus 88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~~~ 151 (249)
T 1o5i_A 88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PIENLY 151 (249)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CCTTBH
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC----------------CCCCCc
Confidence 999654322 2234456788998887665 445556666 999999998874 223346
Q ss_pred chHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHH-HHHcCCCeEEecCCceeEeeeehHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIA-QALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
.|+.+|...+.+.+.++.+ .|+++.+++|+.+.++.... ....... ......+ ...+++++|+
T Consensus 152 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~p---------~~~~~~~~dv 218 (249)
T 1o5i_A 152 TSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE----LLSEEKKKQVESQIP---------MRRMAKPEEI 218 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH----HSCHHHHHHHHTTST---------TSSCBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc----cchhhHHHHHHhcCC---------CCCCcCHHHH
Confidence 7999999999999888776 48999999999999875210 0011111 1222111 1247899999
Q ss_pred HHHHHHHHhcCC----CcceEecCCC
Q 019309 248 VDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 248 a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
|++++.++.... +..+++.++.
T Consensus 219 A~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 219 ASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHcCccccCCCCCEEEECCCc
Confidence 999999987532 4467777664
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=158.71 Aligned_cols=199 Identities=14% Similarity=0.078 Sum_probs=147.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi 99 (343)
.+|++|||||+|+||+++++.|.++| ++|++++|... +|+.|+. +.++|++|
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEH-TIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999 99999988421 5666652 23699999
Q ss_pred EecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 100 ~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
||||..... ...++....++.|+.++..+++++... +.++|++||...+. +..+..
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~~ 128 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK----------------VVANTY 128 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----------------CCTTCH
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----------------CCCCch
Confidence 999965211 223445677899999999999999765 23899999988763 333456
Q ss_pred chHHhHHHHHHHHHHHHHHhC-CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHG-IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~-~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
.|+.+|...+.+.+.++.+.+ +++..++|+.+.++............+........+. ..+.+++|+|++
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dvA~~ 199 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPV---------GKVGEASDIAMA 199 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTT---------CSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCC---------CCccCHHHHHHH
Confidence 799999999999999998876 8999999999998753322222222233333332221 236789999999
Q ss_pred HHHHHhcCC--CcceEecCCCcc
Q 019309 251 LIRLMEGEN--TGPVNIGNPGEF 271 (343)
Q Consensus 251 i~~~~~~~~--~~~~~~~~~~~~ 271 (343)
++.+++... +..+++.++..+
T Consensus 200 ~~~l~~~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 200 YLFAIQNSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHCTTCCSCEEEESTTGGG
T ss_pred HHHHccCCCCCCcEEEecCCeec
Confidence 999998644 457788777554
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=162.03 Aligned_cols=220 Identities=10% Similarity=0.007 Sum_probs=151.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~v 98 (343)
+.+|+++||||+|+||.++++.|.++| ++|++++|+........ ..+ ..++.++.+|+.|.. +.++|+|
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKGEAAA-RTM-AGQVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH-TTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH-HHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 367999999999999999999999999 99999998532221111 111 247899999999873 2368999
Q ss_pred EEecCCCCcc--ccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC-CCCCCCCCCCCCCCCCCCchH
Q 019309 99 YHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI-HPQPETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 99 i~~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~-~~~~e~~~~~~~~~~~~~~Y~ 174 (343)
||+||...+. ...++....+++|+.++..+++++..... |+|++||...+..... ....++ ..+..+...|+
T Consensus 91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~Y~ 166 (291)
T 3rd5_A 91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLAYS 166 (291)
T ss_dssp EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHHHH
T ss_pred EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcchHH
Confidence 9999976432 23456678999999999999999998776 8999999887753211 111111 13444556799
Q ss_pred HhHHHHHHHHHHHHHHh---C--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 175 EGKRVAETLMFDYHRQH---G--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~---~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.+|...+.+.+.++.+. | +++..++||.|.++..... ...+.... .. .+ ..+-..+++|+|+
T Consensus 167 ~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~----~~~~~~~~-~~--~~------~~~~~~~~~~~A~ 233 (291)
T 3rd5_A 167 QSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS----GRKLGDAL-MS--AA------TRVVATDADFGAR 233 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc----chHHHHHH-HH--HH------HHHHhCCHHHHHH
Confidence 99999999998887664 4 8999999999988753211 01111100 00 00 1122345899999
Q ss_pred HHHHHHhcCC-Ccce-Eec
Q 019309 250 GLIRLMEGEN-TGPV-NIG 266 (343)
Q Consensus 250 ~i~~~~~~~~-~~~~-~~~ 266 (343)
+++.++..+. .|.+ .+.
T Consensus 234 ~~~~l~~~~~~~G~~~~vd 252 (291)
T 3rd5_A 234 QTLYAASQDLPGDSFVGPR 252 (291)
T ss_dssp HHHHHHHSCCCTTCEEEET
T ss_pred HHHHHHcCCCCCCceeCCc
Confidence 9999998754 5544 443
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=162.17 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=150.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------ 91 (343)
...+++||||||+|+||.+++++|.++| ++|+++++............+ ...++.++.+|+.|..
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 3577999999999999999999999999 999988743322222211111 1246889999999863
Q ss_pred cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..++|+|||+||...... ...+....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 155 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK------------- 155 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-------------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-------------
Confidence 226999999999664321 23445678899999988876665 45565 999999987663
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.+.++..... ............+. .
T Consensus 156 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~---------~ 219 (256)
T 3ezl_A 156 ---GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI----RPDVLEKIVATIPV---------R 219 (256)
T ss_dssp ---SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----CHHHHHHHHHHSTT---------S
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc----CHHHHHHHHhcCCC---------C
Confidence 3334567999999999999888876 479999999999987642211 12233333322211 2
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+.+++|+|++++.++.... +..+++.++..+
T Consensus 220 ~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 220 RLGSPDEIGSIVAWLASEESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCC
T ss_pred CCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEeC
Confidence 36688999999999996432 447788776543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=161.57 Aligned_cols=211 Identities=14% Similarity=0.015 Sum_probs=150.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+++|+||||||+|+||.++++.|.++| ++|+++.+......+.....+ ...++.++.+|+.|...
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADG-FNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH 102 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 998776543211111111111 23578999999998632
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH-----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~-----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ..++....++.|+.++.++++++. +.+. ++|++||...+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 169 (267)
T 4iiu_A 103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM------------- 169 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-------------
T ss_pred CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-------------
Confidence 27999999999764322 234556788999999999998873 3444 999999987653
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... ...........+. .
T Consensus 170 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~~p~---------~ 232 (267)
T 4iiu_A 170 ---GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----ESALKEAMSMIPM---------K 232 (267)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----HHHHHHHHHTCTT---------C
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----HHHHHHHHhcCCC---------C
Confidence 23344679999999999888887764 79999999999998764321 2333333333221 2
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+.+++|+|++++.++.... +..+++.+|
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 36789999999999997543 446777665
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=159.86 Aligned_cols=188 Identities=14% Similarity=-0.031 Sum_probs=131.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
++|+||||||+|+||+++++.|+++| ++|++++|+.... +.+...+ .++.++.+|+.|... .++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRL-QALAAEL--EGALPLPGDVREEGDWARAVAAMEEAFGEL 79 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHHHh--hhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999 9999999843211 1111222 268899999998631 268
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|+|||+||...... ...+....++.|+.++..+++ .+++.+. +||++||...+. +
T Consensus 80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 143 (234)
T 2ehd_A 80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------------P 143 (234)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------------C
Confidence 99999998654222 223456778999998875554 4455666 999999988763 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
..+...|+.+|...|.+.+.++.+ .|+++.++||+.+.++... .. . .. +.+++
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--------~~-----~-~~----------~~~~~ 199 (234)
T 2ehd_A 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAG--------NT-----P-GQ----------AWKLK 199 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------------CC
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccc--------cc-----c-cc----------cCCCC
Confidence 334467999999999988887765 4899999999988765311 00 0 00 11578
Q ss_pred hHHHHHHHHHHHhcCC
Q 019309 244 VSDMVDGLIRLMEGEN 259 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~ 259 (343)
++|+|++++.++..+.
T Consensus 200 ~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 200 PEDVAQAVLFALEMPG 215 (234)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999998764
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=162.71 Aligned_cols=221 Identities=16% Similarity=0.122 Sum_probs=152.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC---------Cccchh---hhc--CCCceEEEEcccCCccc
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG---------SKDNLK---KWI--GHPRFELIRHDVTEPLL 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------~~~~~~---~~~--~~~~~~~~~~d~~~~~~ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|.... ..+.+. ..+ ...++.++.+|+.|+..
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 467899999999999999999999999 999999884211 111111 111 12468889999998732
Q ss_pred ------------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC-C-eEEEEeCCcccCC
Q 019309 93 ------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGD 150 (343)
Q Consensus 93 ------------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~-~-r~i~~SS~~v~~~ 150 (343)
.++|++||+||...... ..++....++.|+.++..+++++. +.+ . ++|++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 37999999999765322 223445678899999999988873 333 3 899999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc-C
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR-G 226 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~-~ 226 (343)
+......|+.+|...+.+.+.++.+ +|+++..++|+.+.++... .......+..... .
T Consensus 171 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---~~~~~~~~~~~~~~~ 232 (280)
T 3pgx_A 171 ---------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE---PEAMMEIFARHPSFV 232 (280)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---HHHHHHHHHHCGGGG
T ss_pred ---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc---hhhhhhhhhcCchhh
Confidence 3334567999999999999998876 5899999999999998632 1111111111000 0
Q ss_pred CCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 227 EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+... .. ....+.+++|+|++++.++.... +..+++.++.
T Consensus 233 ~~~~~~-~~-~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 233 HSFPPM-PV-QPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp GGSCCB-TT-BCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hhhhhc-cc-CCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 111111 11 11248899999999999997543 4467776653
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=161.06 Aligned_cols=211 Identities=15% Similarity=0.091 Sum_probs=152.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
..+|++|||||+|+||+++++.|.++| ++|++++|+..... .....+. .....+.+|+.|+.. .+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQ-AISDYLG-DNGKGMALNVTNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHH-HHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHhc-ccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999 99999998532211 1222222 357889999998732 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||...... ..+++...++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 147 (248)
T 3op4_A 84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------------- 147 (248)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------------
Confidence 999999999764322 2345567889999999999888753 455 999999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++...... ...........+ ...+.
T Consensus 148 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~~p---------~~r~~ 214 (248)
T 3op4_A 148 GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN----DEQRTATLAQVP---------AGRLG 214 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC----HHHHHHHHHTCT---------TCSCB
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC----HHHHHHHHhcCC---------CCCCc
Confidence 33345679999999999998888763 799999999999887532211 122222222211 12367
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++|+|++++.++.... +..+++.++.
T Consensus 215 ~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 215 DPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 89999999999997543 4467777664
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=161.91 Aligned_cols=214 Identities=12% Similarity=0.125 Sum_probs=152.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.|+.. .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999 999999985322111111111 13478899999998732 3
Q ss_pred CCCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|++||+||.... ....++....++.|+.++..+++++. +.+.++|++||...+.
T Consensus 88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (264)
T 3ucx_A 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH--------------- 152 (264)
T ss_dssp CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC---------------
T ss_pred CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc---------------
Confidence 69999999986422 11223456778999999999988764 3345999999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH-----------HHHHHHHHcCCCeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV-----------SNFIAQALRGEPLT 230 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 230 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.|+++... ... ..+......+.
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 224 (264)
T 3ucx_A 153 -SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLK----SYFEHQAGKYGTSVEDIYNAAAAGS--- 224 (264)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHH----HHHHHHHHHTTCCHHHHHHHHHTTS---
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHH----HHHHhhhhhcCCCHHHHHHHHhccC---
Confidence 3334467999999999999988876 5899999999999886411 111 11122222221
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+++.++..
T Consensus 225 ------p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 225 ------DLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp ------SSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ------CcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 22347889999999999997543 45778877654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=169.03 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=149.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc------CCCceEEEEcccCCccc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI------GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~-------- 92 (343)
+.+|+||||||+|+||++++++|+++| ++|++++|+..........+. ...++.++.+|+.+...
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 999999985322111111110 13478999999998732
Q ss_pred ----CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 93 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 ----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-----~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+||||||...... ...+....++.|+.++.++++++... +.++|++||...+
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------- 163 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----------- 163 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc-----------
Confidence 25999999999543211 22344567899999999999987652 3389999998732
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+. |+++.++||++++|+.............+.......
T Consensus 164 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------- 228 (303)
T 1yxm_A 164 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--------- 228 (303)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS---------
T ss_pred ------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC---------
Confidence 22233569999999999999888764 899999999999998411110100011111111110
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
....+.+++|+|++++.++.... +..+++.++..+
T Consensus 229 p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 229 PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267 (303)
T ss_dssp TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeec
Confidence 11237889999999999997532 447788777554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=165.74 Aligned_cols=223 Identities=12% Similarity=0.001 Sum_probs=157.3
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 92 (343)
..+|+||||||+ |+||.++++.|.++| ++|++++|... ..+.+.... ....+.++.+|++++..
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 467999999999 999999999999999 99999998621 122222221 12358899999998732
Q ss_pred -CCCCEEEEecCCCCcc---------ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|++||+||..... ....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 159 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---------- 159 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc----------
Confidence 3689999999975431 233455678899999999999999765 33899999988763
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.|.++..... ..............+.
T Consensus 160 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~------- 224 (271)
T 3ek2_A 160 ------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI--KSFGKILDFVESNSPL------- 224 (271)
T ss_dssp ------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC--HHHHHHHHHHHHHSTT-------
T ss_pred ------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc--cchHHHHHHHHhcCCc-------
Confidence 33345679999999999999888764 89999999999988753211 1122333333332221
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHH
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAE 278 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~ 278 (343)
..+..++|+|++++.++.... +..+++.++..+++.++.+
T Consensus 225 --~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 225 --KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC--
T ss_pred --CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhhh
Confidence 135778999999999997532 4588898888777766543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=165.77 Aligned_cols=216 Identities=14% Similarity=0.060 Sum_probs=153.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.|+..
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAG-ARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 3468999999999999999999999999 999999885322211111111 12468899999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ..+++...++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~-------------- 167 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL-------------- 167 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC--------------
Confidence 26999999999654322 2344567789999999999776643 455 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++... ... ..+........+.
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~--------- 232 (271)
T 4ibo_A 168 --ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ----ALIDNPEFDAWVKARTPA--------- 232 (271)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHHCHHHHHHHHHHSTT---------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh----hcccCHHHHHHHHhcCCC---------
Confidence 3334567999999999999998876 4799999999999887421 111 1122222222211
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
..+.+++|+|++++.++.... +..+++.+|...
T Consensus 233 ~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 233 KRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeec
Confidence 236778999999999987543 457888877554
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=157.40 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=145.0
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 93 (343)
.+++|+||||||+|+||+++++.|.++| ++|++++|+.... ..+.++.+|+.|+.. .
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~----------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAG-DKVAITYRSGEPP----------EGFLAVKCDITDTEQVEQAYKEIEETHG 86 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSCCC----------TTSEEEECCTTSHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHhh----------ccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3467999999999999999999999999 9999999853221 237889999998632 2
Q ss_pred CCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.+|+|||+||..... ...++....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 151 (253)
T 2nm0_A 87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL--------------- 151 (253)
T ss_dssp SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC---------------
Confidence 589999999965321 13456778899999999998887653 355 999999987652
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.+.++.... +............+ ...+
T Consensus 152 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~p---------~~~~ 217 (253)
T 2nm0_A 152 -GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV----LTDEQRANIVSQVP---------LGRY 217 (253)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-------------CHHHHHTTCT---------TCSC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhcCC---------CCCC
Confidence 12223579999999999999888764 6899999999987764211 00011111111111 1237
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
++++|+|++++.++..+. +..+.+.++..
T Consensus 218 ~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 899999999999997643 44677776644
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=163.98 Aligned_cols=217 Identities=14% Similarity=0.086 Sum_probs=152.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
..+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.|+..
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999 999999985322211111111 13578999999998742
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||...... ..++....++.|+.++..+++++.. .+ .++|++||...+.
T Consensus 97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 163 (266)
T 4egf_A 97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------- 163 (266)
T ss_dssp TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-------------
Confidence 26999999999764322 2234456789999999998887743 33 3899999998763
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+.|.++....... ............+ ..
T Consensus 164 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p---------~~ 229 (266)
T 4egf_A 164 ---PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG--DEAKSAPMIARIP---------LG 229 (266)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC--SHHHHHHHHTTCT---------TS
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc--ChHHHHHHHhcCC---------CC
Confidence 3334567999999999999988876 48999999999998763110000 0112222222211 12
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+.+++|+|++++.++.... +..+++.++..+
T Consensus 230 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYTM 265 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCccCcEEEECCCccC
Confidence 36789999999999997543 457788776543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=161.39 Aligned_cols=214 Identities=12% Similarity=-0.004 Sum_probs=150.8
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
+.+|++|||||+ |+||.++++.|.++| ++|++++|... ..+.+..+.. ...+.++.+|+.++.
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999 999999999999999 99999998542 1112222111 124788999999863
Q ss_pred cCCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
..++|+|||+||.... .....+....+++|+.++..+++++... +.+||++||...+.
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 166 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK---------- 166 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS----------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc----------
Confidence 2369999999996542 1123345678899999999999998754 24899999987653
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++||.++++..... .....+........++
T Consensus 167 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~p~------- 231 (285)
T 2p91_A 167 ------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI--TGFHLLMEHTTKVNPF------- 231 (285)
T ss_dssp ------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C--TTHHHHHHHHHHHSTT-------
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc--cchHHHHHHHHhcCCC-------
Confidence 22334679999999999999888764 89999999999999863211 1112222222222111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+.+++|+|++++.++.... +..+++.++.
T Consensus 232 --~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 --GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp --SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred --CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 125789999999999996432 3467777764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=158.65 Aligned_cols=203 Identities=13% Similarity=0.041 Sum_probs=148.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcccC----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLLI---------- 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~---------- 93 (343)
.++|+||||||+|+||++++++|+++|. ++|++++|+..... .+..+. ...++.++.+|+.+....
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV 97 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence 4678999999999999999999999985 78999998654322 222221 124789999999987321
Q ss_pred ----CCCEEEEecCCCC-c----cccccChHHHHHHHHHHHHHHHHHHHHc----------------CCeEEEEeCCccc
Q 019309 94 ----EVDQIYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAKRV----------------GARILLTSTSEVY 148 (343)
Q Consensus 94 ----~~d~vi~~a~~~~-~----~~~~~~~~~~~~~nv~~~~~l~~~a~~~----------------~~r~i~~SS~~v~ 148 (343)
++|+|||+||... . .....+....++.|+.++..+++++... +.+||++||...+
T Consensus 98 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 177 (267)
T 1sny_A 98 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS 177 (267)
T ss_dssp HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred cCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccccc
Confidence 5999999999654 1 1123345567899999999999888543 3489999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc
Q 019309 149 GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 225 (343)
Q Consensus 149 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~ 225 (343)
.... +..+...|+.+|...|.+++.++.+ .++++.++||++|..+....
T Consensus 178 ~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------------- 229 (267)
T 1sny_A 178 IQGN-------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--------------- 229 (267)
T ss_dssp STTC-------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT---------------
T ss_pred ccCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC---------------
Confidence 4211 1123457999999999999988876 58999999999997764210
Q ss_pred CCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---CcceEecCCCcc
Q 019309 226 GEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNPGEF 271 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~ 271 (343)
..++.++|+|+.++.++.... .|.|....+..+
T Consensus 230 -------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 265 (267)
T 1sny_A 230 -------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPL 265 (267)
T ss_dssp -------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBC
T ss_pred -------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCc
Confidence 024678999999999998654 566655454444
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-21 Score=162.69 Aligned_cols=227 Identities=17% Similarity=0.109 Sum_probs=145.6
Q ss_pred CCCCCChhhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCc
Q 019309 13 PPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEP 90 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~ 90 (343)
+-....++.++.++..+|++|||||+|+||+++++.|.++| ++|++..+......+.+...+ ...++.++.+|+.++
T Consensus 11 ~~~~~~~~~~~~m~~~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 89 (267)
T 3u5t_A 11 VDLGTENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDP 89 (267)
T ss_dssp ----------------CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccccccccccccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 33455566667777788999999999999999999999999 999887653322222222221 124688899999987
Q ss_pred cc------------CCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCC
Q 019309 91 LL------------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDP 151 (343)
Q Consensus 91 ~~------------~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~ 151 (343)
.. .++|++|||||........ .+....++.|+.++..+++++... +.++|++||...+.
T Consensus 90 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 167 (267)
T 3u5t_A 90 AAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL-- 167 (267)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH--
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc--
Confidence 32 3699999999976432222 234567789999999999988754 23899999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC
Q 019309 152 LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEP 228 (343)
Q Consensus 152 ~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+..+..... .............
T Consensus 168 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~- 229 (267)
T 3u5t_A 168 --------------LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG---KSDEVRDRFAKLA- 229 (267)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------CHHHHHTSS-
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc---CCHHHHHHHHhcC-
Confidence 22334679999999999999998875 79999999999987642110 0011112222211
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
....+..++|+|++++.++.... .| .+++.+|
T Consensus 230 --------p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 230 --------PLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp --------TTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred --------CCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 11246789999999999997544 44 5666554
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-21 Score=160.41 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=130.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----------cCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----------LIEV 95 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 95 (343)
+.+|++|||||+|+||+++++.|.+ | +.|++++|.. +.........++.++.+|+.+.. +.++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGRNP----EHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEESCH----HHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeCCH----HHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999987 8 8999998842 22333333457889999987651 2269
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|+|||+||...... ...+....++.|+.++..+++++. +.+.++|++||...+. +.
T Consensus 77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 140 (245)
T 3e9n_A 77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG----------------PH 140 (245)
T ss_dssp SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------------------------
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc----------------CC
Confidence 99999999664322 223455678999999877777663 4456999999988764 23
Q ss_pred CCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.+...|+.+|...+.+.+.++.+ .|+++..++||.+.++.... +.... +. ......++++
T Consensus 141 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~~~~--~~-------~~~~~~~~~p 203 (245)
T 3e9n_A 141 PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG--------LMDSQ--GT-------NFRPEIYIEP 203 (245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------CCGGGSCH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh--------hhhhh--hc-------ccccccCCCH
Confidence 34467999999999999998876 47999999999998864211 11100 00 0112347899
Q ss_pred HHHHHHHHHHHhcCC-CcceEec
Q 019309 245 SDMVDGLIRLMEGEN-TGPVNIG 266 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~-~~~~~~~ 266 (343)
+|+|++++.+++.+. .+++++.
T Consensus 204 ~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 204 KEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCccceeeeE
Confidence 999999999999876 4456653
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=165.46 Aligned_cols=217 Identities=13% Similarity=0.048 Sum_probs=151.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+++++||||+|+||.++++.|.++| ++|+++++............. ...++.++.+|+.|...
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999 999998853222111111111 13578999999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 167 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-------------- 167 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc--------------
Confidence 27999999999664322 2334567789999999998887743 455 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... .... ..... ........
T Consensus 168 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~----~~~~----~~~~~----~~~~~~~~ 233 (269)
T 3gk3_A 168 --GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV----PQDV----LEAKI----LPQIPVGR 233 (269)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC---------------CCS----GGGCTTSS
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh----chhH----HHHHh----hhcCCcCC
Confidence 33345679999999999998888764 79999999999988753211 1111 11000 01111234
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
+.+++|+|++++.++.... +..+++.+|..++
T Consensus 234 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCCC
T ss_pred ccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeCc
Confidence 6789999999999997653 4578888876553
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=158.98 Aligned_cols=209 Identities=16% Similarity=0.074 Sum_probs=150.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
..+|+||||||+|+||+++++.|.++| ++|++++|..... ...+..+.+|+.|... .+
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSD---------VNVSDHFKIDVTNEEEVKEAVEKTTKKYGR 81 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCC--C---------TTSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhc---------cCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999 9999999854321 1256788999998732 27
Q ss_pred CCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||....... .++....+++|+.++..+++++.. .+. ++|++||...+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (269)
T 3vtz_A 82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA---------------- 145 (269)
T ss_dssp CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------------
Confidence 9999999996543222 223456778999999998887643 455 999999998874
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCC-------CCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNI-------DDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. ++++..++||.|.++.... .................
T Consensus 146 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 216 (269)
T 3vtz_A 146 ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH--------- 216 (269)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS---------
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC---------
Confidence 33344679999999999999998877 7999999999998763100 00001112222222211
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+++.+|..
T Consensus 217 p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 217 PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 11236789999999999997543 45788877643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=164.73 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=153.9
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
.+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.++..
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 999999985322212111111 12478899999998732
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ..++....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 169 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR------------- 169 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH-------------
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-------------
Confidence 36999999999543221 234556788999999999998874 2334 999999987762
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.|.++........ ............++ .
T Consensus 170 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~p~---------~ 236 (277)
T 4fc7_A 170 ---GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGG-PQASLSTKVTASPL---------Q 236 (277)
T ss_dssp ---TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSC-CHHHHHHHHHTSTT---------S
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccC-CHHHHHHHhccCCC---------C
Confidence 23334679999999999999888764 79999999999988631000000 01122222222211 2
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
.+.+++|+|++++.++.... +..+++.+|..++
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 36789999999999997543 4577887775444
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=155.57 Aligned_cols=209 Identities=15% Similarity=0.098 Sum_probs=147.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+++||||+|+||+++++.|.++| ++|++++|+. +.+.......++.++.+|+.|+.. .+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEE----GPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 9999999843 222221111137889999998632 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ..++....++.|+.++..+++++.. .+. ++|++||...++
T Consensus 78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 141 (245)
T 1uls_A 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------------- 141 (245)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC----------------
Confidence 999999999654222 1234456789999999999888754 355 899999987432
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
..+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++...... ...........+. ..++
T Consensus 142 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~~~~ 207 (245)
T 1uls_A 142 -NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP----EKVREKAIAATPL---------GRAG 207 (245)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC----HHHHHHHHHTCTT---------CSCB
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC----HHHHHHHHhhCCC---------CCCc
Confidence 122357999999999988888765 3899999999999887532111 1122222221111 1267
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
+++|+|++++.++.... +..+.+.++..
T Consensus 208 ~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 208 KPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (245)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 89999999999997542 44667766643
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=161.02 Aligned_cols=214 Identities=12% Similarity=0.003 Sum_probs=151.8
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 91 (343)
+.+|++|||||+ |+||+++++.|.++| ++|++++|+.. ..+.+..+.. ...+.++.+|+.++.
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357899999999 999999999999999 99999998653 2222222211 124788999999863
Q ss_pred cCCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..++|+|||+||.... .....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 150 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------- 150 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-----------
Confidence 2368999999996542 1123345678899999999999999875 44899999987652
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++...... .............++
T Consensus 151 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~-------- 215 (275)
T 2pd4_A 151 -----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA--DFRMILKWNEINAPL-------- 215 (275)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTT--------
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc--ccHHHHHHHHhcCCc--------
Confidence 22334579999999999999888765 899999999999987532111 112222222221111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
..+.+++|+|++++.++.... .| .+++.++.
T Consensus 216 -~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 -RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250 (275)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 125688999999999997532 44 56676654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=159.10 Aligned_cols=214 Identities=11% Similarity=0.006 Sum_probs=154.0
Q ss_pred CCCEEEEEcCchh--HHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 28 SNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.+|+||||||+|+ ||.++++.|.++| ++|++++|.. ..+.+..+. ....+.++.+|+.+...
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW 101 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc
Confidence 5789999999977 9999999999999 9999999864 222222221 12358899999998732
Q ss_pred CCCCEEEEecCCCCcc---------ccccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
.++|+||||||..... ....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 171 (280)
T 3nrc_A 102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---------- 171 (280)
T ss_dssp SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----------
T ss_pred CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----------
Confidence 3689999999976431 223445568899999999999988643 34899999988763
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++...... .............+.
T Consensus 172 ------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~------- 236 (280)
T 3nrc_A 172 ------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS--NFKKMLDYNAMVSPL------- 236 (280)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT--THHHHHHHHHHHSTT-------
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc--chHHHHHHHHhcCCC-------
Confidence 3334567999999999999988876 4899999999999987532211 112233322222211
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
..+.+++|+|++++.++.... +..+++.++..+
T Consensus 237 --~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 237 --KKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHC 273 (280)
T ss_dssp --CSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGGG
T ss_pred --CCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCccc
Confidence 125778999999999997542 457788776543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=165.10 Aligned_cols=215 Identities=11% Similarity=-0.014 Sum_probs=152.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|......+...... ...++.++.+|+.|... .
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999999 999999985322111111111 12467889999998632 2
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
++|++|||||...... ..++....+++|+.++..+++++. +.+. ++|++||...+.
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 169 (270)
T 3ftp_A 105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA--------------- 169 (270)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC---------------
Confidence 6999999999654322 234556788999999999998875 3344 899999987752
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.... ............. ....+
T Consensus 170 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~---------p~~r~ 235 (270)
T 3ftp_A 170 -GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG----LPQEQQTALKTQI---------PLGRL 235 (270)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH----SCHHHHHHHHTTC---------TTCSC
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh----cCHHHHHHHHhcC---------CCCCC
Confidence 2334467999999999999888876 48999999999998763111 0011222222221 11246
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.+++|+|++++.++.... +..+++.++..+
T Consensus 236 ~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 236 GSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 789999999999996432 457888877654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=167.16 Aligned_cols=233 Identities=12% Similarity=0.051 Sum_probs=159.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CC---ceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HP---RFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~---------- 92 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+.. .. ++.++.+|+.++..
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999 9999999853221111111111 12 68899999998732
Q ss_pred --CCCCEEEEecCCCCccc------cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|+|||+||...... ...+....++.|+.++..+++++.. .+.++|++||...+...
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~--------- 173 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA--------- 173 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC---------
Confidence 26999999999653221 2234567889999999999888764 33589999998776321
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC-ccH----HHHHHHHHHcCCCeEEe
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD-GRV----VSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~-~~~----~~~~~~~~~~~~~~~~~ 232 (343)
..+...|+.+|...+.+.+.++.+ .|+++.+++|+++.++...... ... .......... ..+
T Consensus 174 ------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~--~~p-- 243 (297)
T 1xhl_A 174 ------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE--CIP-- 243 (297)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT--TCT--
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHh--cCC--
Confidence 023457999999999999888765 5899999999999887421100 000 0011111111 111
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcC----C-CcceEecCCCccCHHHHHHHHHHHh
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGE----N-TGPVNIGNPGEFTMLELAETVKELI 284 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~----~-~~~~~~~~~~~~s~~e~~~~i~~~~ 284 (343)
...+.+++|+|++++.++... . +..+++.++..+.+.+.+..+.+.+
T Consensus 244 -----~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~ 295 (297)
T 1xhl_A 244 -----VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSVL 295 (297)
T ss_dssp -----TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHHT
T ss_pred -----CCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhhh
Confidence 123789999999999999754 2 4578888887777666555555443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=162.53 Aligned_cols=213 Identities=16% Similarity=0.036 Sum_probs=145.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 94 (343)
|+|++|||||+|+||+++++.|.++| ++|++++|+..........+. ...++.++.+|+.|+.. .+
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 999999985322111111111 12468889999998632 27
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC-C-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|+|||+||...... ...+....++.|+.++..+++++.. .+ . ++|++||...+.
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 144 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV--------------- 144 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---------------
Confidence 999999998654221 2234456789999998887776643 44 4 999999987652
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHH-----------HHHHHHHcCCCeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVS-----------NFIAQALRGEPLT 230 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 230 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++|+++.++... .... ......... .
T Consensus 145 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~- 216 (256)
T 1geg_A 145 -GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA----EIDRQVSEAAGKPLGYGTAEFAKR--I- 216 (256)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH----HHHHHHHHHHTCCTTHHHHHHHTT--C-
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh----hhhhhccccccCChHHHHHHHHhc--C-
Confidence 2223457999999999999888865 4899999999999876310 0000 001111111 1
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+.+.++..
T Consensus 217 ------p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 217 ------TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp ------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred ------CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 11237899999999999997542 44677776643
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=158.58 Aligned_cols=213 Identities=15% Similarity=0.058 Sum_probs=148.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC--CccchhhhcC-CCceEEEEcccCCccc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG--SKDNLKKWIG-HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 92 (343)
++|++|||||+|+||+++++.|.++| ++|++++|.... ..+....+.. ..++.++.+|+.++..
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 999999985322 1111111111 2468899999998632
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|+|||+||...... ..++....++.|+.++..+++++.. .+ .++|++||...+.
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 146 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ------------- 146 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc-------------
Confidence 26999999999654321 2234567789999999999888764 24 4899999987763
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHH-----------HHHHHHHcCCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVS-----------NFIAQALRGEP 228 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~-----------~~~~~~~~~~~ 228 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+.+.++... .... ..........
T Consensus 147 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (258)
T 3a28_C 147 ---GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE----QIDAELSKINGKPIGENFKEYSSSI- 218 (258)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH----HHHHHHHHHHCCCTTHHHHHHHTTC-
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh----hhhhhhccccCCchHHHHHHHHhcC-
Confidence 22334679999999999999888664 899999999998765310 0000 0111111111
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+++.++..
T Consensus 219 --------p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 219 --------ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred --------CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 11237899999999999997542 44677777644
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=158.88 Aligned_cols=214 Identities=16% Similarity=0.152 Sum_probs=148.9
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----------C
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----------I 93 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~ 93 (343)
+.+.+|++|||||+|+||.++++.|.++| ++|++++|.. +.....+ ...+.++.+|+.|... .
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~----~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g 78 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIRG----EDVVADL-GDRARFAAADVTDEAAVASALDLAETMG 78 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSC----HHHHHHT-CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCch----HHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34578999999999999999999999999 9999999832 2222222 3578999999998631 3
Q ss_pred CCCEEEEecCCCCcc--------ccccChHHHHHHHHHHHHHHHHHHHHc------------CC-eEEEEeCCcccCCCC
Q 019309 94 EVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV------------GA-RILLTSTSEVYGDPL 152 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~--------~~~~~~~~~~~~nv~~~~~l~~~a~~~------------~~-r~i~~SS~~v~~~~~ 152 (343)
++|++|||||..... ...++....++.|+.++..+++++... +. ++|++||...+.
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 155 (257)
T 3tl3_A 79 TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD--- 155 (257)
T ss_dssp CEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C---
T ss_pred CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC---
Confidence 799999999865321 233455678899999999999988642 23 899999987762
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.... .............+.
T Consensus 156 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~ 218 (257)
T 3tl3_A 156 -------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS----LPEEARASLGKQVPH 218 (257)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-------CHHHHHHHHHTSSS
T ss_pred -------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh----ccHHHHHHHHhcCCC
Confidence 2233457999999999999888876 47999999999998875321 112222222222111
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccC
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT 272 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s 272 (343)
...+.+++|+|++++.+++... +..+++.++..++
T Consensus 219 --------~~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 --------PSRLGNPDEYGALAVHIIENPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC---
T ss_pred --------CCCccCHHHHHHHHHHHhcCCCCCCCEEEECCCccCC
Confidence 0237889999999999998744 4577887775544
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=159.12 Aligned_cols=214 Identities=17% Similarity=0.088 Sum_probs=152.0
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 92 (343)
...+|++|||||+|+||.++++.|.++| ++|+++++......+.+...+ ...++.++.+|+.|+..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 999998764322222222221 13468899999998732
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||...... ..++....++.|+.++..+++++... +.++|++||.....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~--------------- 171 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL--------------- 171 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC---------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc---------------
Confidence 26999999999654322 23345678899999999999998765 33899999965431
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
.+..+...|+.+|...+.+.+.++.+. |+++..++||.|.++..... ..... ......+. ..+
T Consensus 172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~----~~~~~~~~---------~r~ 237 (271)
T 3v2g_A 172 VPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD-GDHAE----AQRERIAT---------GSY 237 (271)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS-CSSHH----HHHHTCTT---------SSC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc-chhHH----HHHhcCCC---------CCC
Confidence 123345679999999999999888764 89999999999998864322 11111 11221111 125
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..++|+|++++.++.... +..+++.+|.
T Consensus 238 ~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 238 GEPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 788999999999996432 4467776653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=158.42 Aligned_cols=216 Identities=19% Similarity=0.036 Sum_probs=152.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.+.+|++|||||+|+||+++++.|.++| ++|++++|+.....+....+. ...++.++.+|+.|+..
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3478999999999999999999999999 999999985433222111111 12468899999998732
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||....... .++....++.|+.++..+++++.. .+ .++|++||...+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~------------ 175 (276)
T 3r1i_A 108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII------------ 175 (276)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc------------
Confidence 279999999997653322 234456678999999998887753 33 38999999876531
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
....+...|+.+|...+.+.+.++.+ .|+++..++||.|.++..... ...........+ ..
T Consensus 176 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-----~~~~~~~~~~~p---------~~ 239 (276)
T 3r1i_A 176 --NIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-----ADYHALWEPKIP---------LG 239 (276)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-----GGGHHHHGGGST---------TS
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-----hHHHHHHHhcCC---------CC
Confidence 11223467999999999999998877 589999999999998753211 112222222111 12
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.+.+++|+|++++.++.... +..+++.++..
T Consensus 240 r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEECcCcc
Confidence 36788999999999997543 44677776643
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-21 Score=163.39 Aligned_cols=215 Identities=10% Similarity=0.007 Sum_probs=150.5
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc----------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~---------- 92 (343)
+.+.+|+||||||+|+||.++++.|.++| ++|++++|......+.+...+ ...++.++.+|+.+...
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 33467899999999999999999999999 999999985332222222221 12478899999998632
Q ss_pred --CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+||...... ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------ 171 (271)
T 4iin_A 104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------------ 171 (271)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH------------
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC------------
Confidence 27999999999765322 223456778999999988877764 3455 999999987652
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+ .++++..++||.+.++.... ........ .......
T Consensus 172 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~---------~~~~~~~ 234 (271)
T 4iin_A 172 ----GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN----LKDELKAD---------YVKNIPL 234 (271)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------------CGGGCTT
T ss_pred ----CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh----hcHHHHHH---------HHhcCCc
Confidence 3334567999999999999988876 58999999999998764211 11111110 1111122
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+.+++|+|++++.++.... +..+++.+|.
T Consensus 235 ~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 235 NRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 347889999999999997543 4477777653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=159.28 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=147.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-C-CCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-G-HPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|+++.+......+.....+ . ..++.++.+|++|...
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 999988553222222221111 1 2468899999998732
Q ss_pred CCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||...... ..++....+++|+.++..+++++...- .++|++||...+.
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 149 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRD--------------- 149 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH---------------
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhcc---------------
Confidence 26999999998552111 223346778999999999999997652 3899999987761
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
.+..+...|+.+|...+.+.+.++.+.+ +++..++||.+.++...... ....... .........+.
T Consensus 150 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~---~~~~~~~---------~~~~~p~~r~~ 217 (259)
T 3edm_A 150 GGGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT---KPEVRER---------VAGATSLKREG 217 (259)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------CCB
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc---ChHHHHH---------HHhcCCCCCCc
Confidence 1223346799999999999999988764 89999999999876421100 0011111 11111223467
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCccCH
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTM 273 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~ 273 (343)
+++|+|++++.++.... +..+++.++...+.
T Consensus 218 ~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 218 SSEDVAGLVAFLASDDAAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC-
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEECCCcCCCC
Confidence 89999999999997543 45778877655443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=166.77 Aligned_cols=237 Identities=15% Similarity=0.103 Sum_probs=158.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc--------cchhh---h--cCCCceEEEEcccCCccc-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK--------DNLKK---W--IGHPRFELIRHDVTEPLL- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--------~~~~~---~--~~~~~~~~~~~d~~~~~~- 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|...... +.+.. . ....++.++.+|+.+...
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 367899999999999999999999999 99999988522111 11110 0 113578899999998732
Q ss_pred -----------CCCCEEEEecCCCCcc--ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCC
Q 019309 93 -----------IEVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 93 -----------~~~d~vi~~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~ 156 (343)
.++|+||||||..... ...+++...++.|+.++..+++++... +.++|++||...+......+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~ 166 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG 166 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence 2799999999976432 233456678999999999999999864 238999999887643322222
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe----
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL---- 229 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---- 229 (343)
.+. .+..+...|+.+|...+.+.+.++.+. |+++..++||.|.++..... .....+.........
T Consensus 167 ~~~-----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~~~~~~~ 238 (287)
T 3pxx_A 167 AGG-----PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA---PMYRQFRPDLEAPSRADAL 238 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH---HHHHHHCTTSSSCCHHHHH
T ss_pred ccc-----cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc---chhhhhccccccchhHHHH
Confidence 222 233345679999999999999988775 89999999999998863210 000000000000000
Q ss_pred -EEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 230 -TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 230 -~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
...........+.+++|+|++++.++.... +..+++.+|..++
T Consensus 239 ~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 239 LAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred hhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhhc
Confidence 000000111457899999999999996543 4578888776543
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=168.44 Aligned_cols=226 Identities=15% Similarity=0.047 Sum_probs=159.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC---------CCCccchhhhc--CCCceEEEEcccCCccc----
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF---------TGSKDNLKKWI--GHPRFELIRHDVTEPLL---- 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~~~~~~~~~--~~~~~~~~~~d~~~~~~---- 92 (343)
.++++|||||+|+||.++++.|.++| ++|++++|.. ....+.....+ ....+.++.+|+.|...
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 67899999999999999999999999 9999998851 01111111111 12468889999998632
Q ss_pred --------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-----------CCeEEEEeCCcccC
Q 019309 93 --------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTSEVYG 149 (343)
Q Consensus 93 --------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-----------~~r~i~~SS~~v~~ 149 (343)
.++|+||||||...... ..++....++.|+.++..+++++... +.+||++||...+.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 27999999999764322 23345678899999999998887432 13899999987752
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcC
Q 019309 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRG 226 (343)
Q Consensus 150 ~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~ 226 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++|+ +..+......... ..
T Consensus 185 ----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~----~~----- 238 (322)
T 3qlj_A 185 ----------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM----MA----- 238 (322)
T ss_dssp ----------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC------------
T ss_pred ----------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh----hh-----
Confidence 2233467999999999999998877 58999999999 6554321111100 00
Q ss_pred CCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc-----------------CHHHHHHHHHHHhC
Q 019309 227 EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF-----------------TMLELAETVKELIN 285 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~-----------------s~~e~~~~i~~~~g 285 (343)
.....+.+++++|+|++++.++.... +..+++.++... +..|+++.+.+.++
T Consensus 239 -------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ 311 (322)
T 3qlj_A 239 -------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLG 311 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHH
T ss_pred -------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhh
Confidence 11122345789999999999997543 446777776543 77999999999987
Q ss_pred CC
Q 019309 286 PG 287 (343)
Q Consensus 286 ~~ 287 (343)
.+
T Consensus 312 ~~ 313 (322)
T 3qlj_A 312 KA 313 (322)
T ss_dssp HS
T ss_pred cc
Confidence 54
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=162.15 Aligned_cols=216 Identities=13% Similarity=-0.010 Sum_probs=151.1
Q ss_pred cCCCEEEEEcCchh--HHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+|+ ||.++++.|.++| ++|++++|... ..+.+.... ...++.++.+|++|...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDA-LKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHH-HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH-HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 46889999999998 9999999999999 99999988521 111111111 11368899999998732
Q ss_pred -CCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|++|||||.... .....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------- 175 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------- 175 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence 369999999997641 1223455678899999999999998753 23899999988763
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++...... .............+.
T Consensus 176 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~-------- 240 (293)
T 3grk_A 176 -----VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG--DFRYILKWNEYNAPL-------- 240 (293)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C--CHHHHHHHHHHHSTT--------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc--chHHHHHHHHhcCCC--------
Confidence 23344679999999999999888764 799999999999987532111 112222222222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
..+..++|+|++++.++.... +..+++.++..+
T Consensus 241 -~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 241 -RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYHV 277 (293)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHcCccccCCcceEEEECCCccc
Confidence 125678999999999997543 447778776543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=157.46 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=144.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.|+|+||||||+|+||+++++.|.++| ++|++++|...... ...+.+|+.|.. ..+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~-----------~~~~~~d~~d~~~v~~~~~~~~~~~g~ 87 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKS-WNTISIDFRENPNA-----------DHSFTIKDSGEEEIKSVIEKINSKSIK 87 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCTTS-----------SEEEECSCSSHHHHHHHHHHHHTTTCC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCccccc-----------ccceEEEeCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999 99999998643211 134567777652 236
Q ss_pred CCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|+|||+||.... .....+....++.|+.++..+++++...- .++|++||...+. +
T Consensus 88 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~ 151 (251)
T 3orf_A 88 VDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN----------------R 151 (251)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------C
Confidence 8999999996432 12334556788999999999999997642 3899999988763 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
..+...|+.+|...|.+.+.++.+ .++++..++||.|.++. ........ ....+
T Consensus 152 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~------------~~~~~~~~---------~~~~~ 210 (251)
T 3orf_A 152 TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT------------NRKYMSDA---------NFDDW 210 (251)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH------------HHHHCTTS---------CGGGS
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc------------hhhhcccc---------ccccc
Confidence 344567999999999999998877 47999999999887642 11111111 22347
Q ss_pred eehHHHHHHHHHHHhc-CC----CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEG-EN----TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~-~~----~~~~~~~~~~~ 270 (343)
++++|+|++++.++.. .. +..+++..++.
T Consensus 211 ~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~ 244 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSK 244 (251)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETT
T ss_pred CCHHHHHHHHHHHhcCccccCCcceEEEEecCCc
Confidence 8899999999999987 22 44677766544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=163.81 Aligned_cols=235 Identities=16% Similarity=0.070 Sum_probs=153.9
Q ss_pred cCCCCCCChhhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------ccchhhh---c--CC
Q 019309 11 TKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--------KDNLKKW---I--GH 77 (343)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~~---~--~~ 77 (343)
+.|.+++.|..+.. ...+|++|||||+|.||.++++.|.++| ++|++++|..... .+.+... + ..
T Consensus 11 ~~~~~~~~p~~m~~-~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (299)
T 3t7c_A 11 TLEAQTQGPGSMAG-KVEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88 (299)
T ss_dssp -----------CCC-TTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT
T ss_pred ceeccCCCCccccc-ccCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcC
Confidence 34444444444321 2367899999999999999999999999 9999998853211 1111111 1 12
Q ss_pred CceEEEEcccCCccc------------CCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHHc----C
Q 019309 78 PRFELIRHDVTEPLL------------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV----G 136 (343)
Q Consensus 78 ~~~~~~~~d~~~~~~------------~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~~----~ 136 (343)
.++.++.+|+.|... .++|++|||||...... ..++....+++|+.++..+++++... +
T Consensus 89 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~ 168 (299)
T 3t7c_A 89 RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGK 168 (299)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 478899999998732 36999999999654322 23455678899999999999887543 2
Q ss_pred -C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC
Q 019309 137 -A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID 211 (343)
Q Consensus 137 -~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~ 211 (343)
. ++|++||...+. +......|+.+|...+.+.+.++.+. |+++..++||.|.++.....
T Consensus 169 ~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~ 232 (299)
T 3t7c_A 169 RGGSIVFTSSIGGLR----------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNE 232 (299)
T ss_dssp SCEEEEEECCGGGTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH
T ss_pred CCcEEEEECChhhcc----------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCcccccc
Confidence 3 899999988763 33344679999999999999988775 79999999999998763210
Q ss_pred C----------ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 212 D----------GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 212 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
. ................+ . ..+..++|+|++++.++.... +..+++.+|..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 233 PTYRMFRPDLENPTVEDFQVASRQMHVL-------P-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHCTTSSSCCHHHHHHHHHHHSSS-------S-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred chhhhhhhhhccchhhHHHHHhhhhccc-------C-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCccc
Confidence 0 00000000000000101 1 246789999999999997543 457788776543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=164.47 Aligned_cols=197 Identities=12% Similarity=0.004 Sum_probs=142.9
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
.+.+|+||||||+|+||+++++.|.++| ++|++++|......+....+. ...++.++.+|+.|...
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999 999999985322111111111 12468899999998631
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|+|||+||...... ...+....++.|+.++..+++++ ++.+. +||++||...+.
T Consensus 107 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 172 (272)
T 1yb1_A 107 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV-------------- 172 (272)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC--------------
T ss_pred CCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC--------------
Confidence 26999999999654321 22344577899999977776665 34566 999999998763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh------CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH------GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~------~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...|.+++.++.+. |+++.++||+++.++... ... ..
T Consensus 173 --~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~---~~~--------------------~~ 227 (272)
T 1yb1_A 173 --SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---NPS--------------------TS 227 (272)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---CTH--------------------HH
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc---ccc--------------------cc
Confidence 22234579999999999999888764 799999999999887521 000 01
Q ss_pred eEeeeehHHHHHHHHHHHhcCCCcc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGENTGP 262 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~~~~ 262 (343)
...+++++|+|++++.+++.+...+
T Consensus 228 ~~~~~~~~dva~~i~~~~~~~~~~~ 252 (272)
T 1yb1_A 228 LGPTLEPEEVVNRLMHGILTEQKMI 252 (272)
T ss_dssp HCCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 1246889999999999998765443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=157.19 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=142.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+||||||+|+||+++++.|.++| ++|++++|+.... . .+..+.+|+.|+.. .+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~----~------~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAP----K------GLFGVEVDVTDSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCC----T------TSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHH----H------HhcCeeccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999 9999999854221 1 11237889988632 26
Q ss_pred CCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||..... ...++....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------------- 145 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc----------------
Confidence 89999999965421 1234556788999999999988775 3455 999999987642
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++|+.+.++.... +............ ....++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~---------p~~~~~ 212 (247)
T 1uzm_A 146 GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFI---------PAKRVG 212 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGC---------TTCSCB
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh----cCHHHHHHHHhcC---------CCCCCc
Confidence 1223457999999999999888876 48999999999997653110 0011111111111 012378
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
+++|+|++++.++.... +..+++.++..
T Consensus 213 ~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 213 TPAEVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 99999999999997532 44677777644
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=158.90 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=139.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
|+++|++|||||+|+||+++++.|.++| ++|++++|+.....+....+. ....+.++.+|++|+..
T Consensus 1 Ml~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 1 MVMDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999 999999985322111111111 12468889999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++|||||...... ..++....+++|+.++..+++++. +.+. ++|++||...+.
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------------- 145 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS-------------- 145 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc--------------
Confidence 36999999999754322 233456778999999988877764 3455 999999988763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh-CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.|.++.... +. ......... .....+.
T Consensus 146 --~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~--------~~----~~~~~~~~~--~~~~~~~ 209 (264)
T 3tfo_A 146 --VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT--------IT----HEETMAAMD--TYRAIAL 209 (264)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------------CC
T ss_pred --cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc--------cc----chhHHHHHH--hhhccCC
Confidence 33344679999999999999988775 8999999999988764211 00 000000000 0111247
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
.++|+|++++.++..+.
T Consensus 210 ~pedvA~~v~~l~s~~~ 226 (264)
T 3tfo_A 210 QPADIARAVRQVIEAPQ 226 (264)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHhcCCc
Confidence 89999999999999876
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=158.66 Aligned_cols=195 Identities=14% Similarity=0.034 Sum_probs=138.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|+||||||+|+||.++++.|+++| ++|++++|+..........+. ....+.++.+|+.+... .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999 999999985322111111111 12478899999998732 2
Q ss_pred CCCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.+|+|||+||.... .....+....++.|+.++..+++++.. .+. +||++||...+.
T Consensus 106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 171 (262)
T 3rkr_A 106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN-------------- 171 (262)
T ss_dssp CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC--------------
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC--------------
Confidence 69999999996321 112334567889999999998888643 444 999999987762
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+++.++.+ .|+++..++||.+..+.... +. . ......
T Consensus 172 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~----~---------~~~~~~ 228 (262)
T 3rkr_A 172 --PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG--------LS----A---------KKSALG 228 (262)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------------
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc--------cc----c---------cccccc
Confidence 3344567999999999999888866 48999999999887653110 00 0 011234
Q ss_pred eeehHHHHHHHHHHHhcCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~ 259 (343)
+++++|+|++++.++....
T Consensus 229 ~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 229 AIEPDDIADVVALLATQAD 247 (262)
T ss_dssp CCCHHHHHHHHHHHHTCCT
T ss_pred CCCHHHHHHHHHHHhcCcc
Confidence 6789999999999998755
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=161.89 Aligned_cols=224 Identities=11% Similarity=0.117 Sum_probs=151.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc--------cCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL--------LIEV 95 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~--------~~~~ 95 (343)
..+|++|||||+|+||++++++|.++| ++|++++|+.....+....+ .....+..+.+|+.++. +.++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 357899999999999999999999999 99999998532222111111 12346788999999863 2379
Q ss_pred CEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++|||||....... ..+....++.|+.++..+.+++ ++.+. ++|++||...+. +
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 150 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM----------------P 150 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------------C
Confidence 999999997643322 2334556899999977776655 44555 999999988763 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCC-------CCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNI-------DDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
..+...|+.+|...+.+.+.++.+. |+++..++||.+.++.... .................. +..
T Consensus 151 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 225 (267)
T 3t4x_A 151 SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR-----PTS 225 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC-----TTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC-----Ccc
Confidence 3445679999999999999998775 5899999999887752100 000000111111111000 001
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
....+.+++|+|++++.++.... +..+++.+|...+
T Consensus 226 ~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 226 IIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp SSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred cccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 12347889999999999997543 4578888876554
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=156.29 Aligned_cols=216 Identities=16% Similarity=0.096 Sum_probs=148.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
|+|++|||||+|+||.++++.|.++|. +.|+++.|+.... +.+...+ ..++.++.+|+.|... .+
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPL-KKLKEKY-GDRFFYVVGDITEDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHH-HHHHHHH-GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHH-HHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999862 6888888743221 1112212 2468899999998732 26
Q ss_pred CCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHH----HHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||.... ....++....++.|+.++..+++++ ++.+.++|++||...+.
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~---------------- 142 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM---------------- 142 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------
Confidence 9999999997532 1123345678899999999999888 55556999999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh-CCceEEEEeccccCCCCCCCCcc-----HHHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIARIFNTYGPRMNIDDGR-----VVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~-~~~~~i~R~~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. ++++..++||.+.++........ .............+ ..
T Consensus 143 ~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 213 (254)
T 3kzv_A 143 YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------NN 213 (254)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT---------TC
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh---------cC
Confidence 33345679999999999999998775 89999999999998754221100 01112222221111 12
Q ss_pred eeeehHHHHHHHHHHHhcC-C---Cc-ceEecCCCc
Q 019309 240 SFCYVSDMVDGLIRLMEGE-N---TG-PVNIGNPGE 270 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~-~---~~-~~~~~~~~~ 270 (343)
.+.+++|+|++++.++... . .| .+++.+++.
T Consensus 214 r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 214 QLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp ----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred CcCCcccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 3678899999999999865 2 44 556655443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=161.13 Aligned_cols=214 Identities=12% Similarity=0.083 Sum_probs=150.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC---eEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~-------- 92 (343)
+.+|++|||||+|+||.++++.|+++| + .|++++|+.....+....+ ....++.++.+|++|+..
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G-~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEAS-NGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcC-CCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999 6 8999988532211111111 123578899999998732
Q ss_pred ----CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCC
Q 019309 93 ----IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 ----~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
.++|+|||+||..... ...++....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 180 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD--------- 180 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC---------
Confidence 2699999999965311 123455678899999999999988 34454 999999987752
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++......... ...........
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~-------- 244 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGN-EEQAKNVYKDT-------- 244 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTC-HHHHHHHHTTS--------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCc-HHHHHHhhccc--------
Confidence 3334467999999999999999887 4899999999999876310000000 01111111111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.++.++|+|++++.++..+. ++.+.+.+++.
T Consensus 245 ----~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 ----TPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ----CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred ----CCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 12378999999999998765 44667766543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=159.65 Aligned_cols=216 Identities=12% Similarity=-0.014 Sum_probs=154.4
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|++|||||+| +||.++++.|.++| ++|++++|.... .+.+.... ....+.++.+|++|...
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETF-KKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGG-HHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHH-HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999997 99999999999999 999999986321 11122111 11346889999998732
Q ss_pred -CCCCEEEEecCCCCc--------cccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|++|||||.... ....++....++.|+.++..+++++... +.++|++||...+.
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~----------- 174 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK----------- 174 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-----------
Confidence 369999999997642 1223455678899999999999999764 23899999988763
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.|.++..... ..............++
T Consensus 175 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~p~-------- 239 (296)
T 3k31_A 175 -----VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI--SDFHYILTWNKYNSPL-------- 239 (296)
T ss_dssp -----CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC--HHHHHHHHHHHHHSTT--------
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc--cchHHHHHHHHhcCCC--------
Confidence 33344679999999999999888764 79999999999998753221 1112222222222211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
..+..++|+|++++.++.... +..+++.+|..+
T Consensus 240 -~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 240 -RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 125678999999999997533 447788777554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=161.43 Aligned_cols=220 Identities=14% Similarity=0.031 Sum_probs=150.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CC---ceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HP---RFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~---------- 92 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|+.....+....+.. .. ++.++.+|+.|+..
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999 9999999853221111111111 12 68899999998631
Q ss_pred --CCCCEEEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
.++|+|||+||...... ..++....++.|+.++..+++++.. .+.++|++||...+..
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 154 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ-------- 154 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS--------
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCC--------
Confidence 26999999999653221 2234567789999999999888764 2358999999887632
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCC-ccH----HHHHHHHHHcCCCeE
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDD-GRV----VSNFIAQALRGEPLT 230 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~-~~~----~~~~~~~~~~~~~~~ 230 (343)
...+...|+.+|...+.+.+.++.+ .|+++.+++|+++.++...... ... ........... .+
T Consensus 155 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~p 225 (280)
T 1xkq_A 155 -------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC--IP 225 (280)
T ss_dssp -------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT--CT
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC--CC
Confidence 1133467999999999999888765 4899999999999987421100 000 01111111111 11
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcC----C-CcceEecCCCcc
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGE----N-TGPVNIGNPGEF 271 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~----~-~~~~~~~~~~~~ 271 (343)
...+.+++|+|++++.++... . +..+++.++..+
T Consensus 226 -------~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~~ 264 (280)
T 1xkq_A 226 -------IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 264 (280)
T ss_dssp -------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred -------CCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCccc
Confidence 124789999999999998654 2 446777776443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=159.06 Aligned_cols=199 Identities=18% Similarity=0.135 Sum_probs=136.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 95 (343)
++|++|||||+|+||+++++.|.++| ++|++++|+.....+ ....+. .++.++.+|+.|+.. .++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 103 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQE-TAAEIG-DDALCVPTDVTDPDSVRALFTATVEKFGRV 103 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-HHHHHT-SCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-HHHHhC-CCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999999999999999999 999999985322111 112222 578899999998632 279
Q ss_pred CEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcC---CeEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 96 d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
|+|||+||..... ...++....+++|+.++..+++++. +.+ .++|++||...+.
T Consensus 104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------------- 169 (272)
T 4dyv_A 104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-------------- 169 (272)
T ss_dssp CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS--------------
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC--------------
Confidence 9999999975321 1233456788999999888877664 333 3899999987762
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|.++.... ..... .... .......
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~-~~~~---------~~~~~~~ 233 (272)
T 4dyv_A 170 --PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK----MKAGV-PQAD---------LSIKVEP 233 (272)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----hcccc-hhhh---------hcccccC
Confidence 3334567999999999999988876 47999999999998764211 00000 0000 0112234
Q ss_pred eeehHHHHHHHHHHHhcCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~ 259 (343)
+.+++|+|++++.++..+.
T Consensus 234 ~~~pedvA~~v~fL~s~~~ 252 (272)
T 4dyv_A 234 VMDVAHVASAVVYMASLPL 252 (272)
T ss_dssp --CHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhCCCC
Confidence 7899999999999999766
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=157.75 Aligned_cols=220 Identities=17% Similarity=0.089 Sum_probs=150.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------CC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 94 (343)
.++++|||||+|+||.++++.|.++| ++|++++|+.....+....+.. ...+.++.+|+.|+.. .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH 105 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999 9999999854222111122111 2468899999998732 37
Q ss_pred CCEEEEecCCCCc-----cccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|++||+||.... .....+....+++|+.++..+++++ ++.+. ++|++||...+..
T Consensus 106 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~-------------- 171 (283)
T 3v8b_A 106 LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT-------------- 171 (283)
T ss_dssp CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB--------------
T ss_pred CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC--------------
Confidence 9999999996532 1123345678899999999999988 55555 9999999876521
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee--E
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT--R 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 239 (343)
.+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++......... . ................ .
T Consensus 172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-~-----~~~~~~~~~~~~~~p~~~~ 245 (283)
T 3v8b_A 172 FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH-E-----EETAIPVEWPKGQVPITDG 245 (283)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCC-H-----HHHSCCCBCTTCSCGGGTT
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccccccccc-c-----hhhhhhhhhhhhcCccccC
Confidence 12234467999999999999999877 4799999999999887532211000 0 0000001000010011 2
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.+..++|+|++++.++.... +..+++.+|
T Consensus 246 r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 246 QPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 36788999999999997543 446777665
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=155.22 Aligned_cols=202 Identities=8% Similarity=-0.006 Sum_probs=135.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL-----------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~-----------~~ 94 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ...++.++.+|++|+.. .+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999 999999985433222222111 13478899999998732 36
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||...... ...+....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (252)
T 3h7a_A 84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR---------------- 147 (252)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC----------------
T ss_pred ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC----------------
Confidence 899999999654322 23345677899999998888876 44555 999999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCce-EEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQI-RIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~-~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+......|+.+|...+.+.+.++.+. |+++ .++.||.+..+.... ....... ......... +
T Consensus 148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~----~~~~~~~---------~~~~~~~~~-~ 213 (252)
T 3h7a_A 148 GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE----RREQMFG---------KDALANPDL-L 213 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc----cchhhhh---------hhhhcCCcc-C
Confidence 33345679999999999999888764 7888 789999887764211 1111100 001111122 8
Q ss_pred eehHHHHHHHHHHHhcCC
Q 019309 242 CYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~ 259 (343)
.+++|+|++++.++..+.
T Consensus 214 ~~pedvA~~~~~l~s~~~ 231 (252)
T 3h7a_A 214 MPPAAVAGAYWQLYQQPK 231 (252)
T ss_dssp CCHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhCch
Confidence 899999999999998655
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=158.03 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=149.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+.... + ..++.++.+|+.|+.. .+
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAAAAS-I-GKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH-H-CTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH-h-CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 367999999999999999999999999 9999998853222211222 2 3578899999998732 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHH----HHHcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVG-A-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----a~~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|++||+||...... ..++....++.|+.++..++++ +++.+ . ++|++||...+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 145 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA--------------- 145 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc---------------
Confidence 999999999654322 2234567889999999998887 45555 4 999999987763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++............+.... .+ ...+
T Consensus 146 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~---------~~r~ 212 (247)
T 3rwb_A 146 -GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA---------MKGK 212 (247)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS---------SCSC
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc---------cCCC
Confidence 2334467999999999999988876 589999999999987632111111111111110 01 1125
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.+++|+|+++..++.... +..+++.+|.
T Consensus 213 ~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 213 GQPEHIADVVSFLASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 678999999999997543 4467776653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=159.64 Aligned_cols=221 Identities=17% Similarity=0.118 Sum_probs=150.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|++|||||+|+||+++++.|.++| ++|++++|+.... +.+...+ .++.++.+|+.|+.. .+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGG-RALEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999 9999999853211 1112222 358889999998732 26
Q ss_pred CCEEEEecCCCCcc--c---cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~--~---~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+||||||..... . ..++....++.|+.++..+++++.. .+.++|++||...+.
T Consensus 83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (270)
T 1yde_A 83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------------- 146 (270)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC----------------
Confidence 99999999865321 1 1233467889999999999888853 345999999976542
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC---CCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI---DDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|...+.+.+.++.+ +|+++.+++|++++++.... ....... .+.......++ .
T Consensus 147 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~~p~---------~ 216 (270)
T 1yde_A 147 GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRA-SIREGMLAQPL---------G 216 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHH-HHHHHHHTSTT---------S
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHH-HHHHHhhcCCC---------C
Confidence 1122357999999999999988865 58999999999999864110 0000000 11111111111 1
Q ss_pred eeeehHHHHHHHHHHHhcCC---CcceEecCCCccCHHHHH
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TGPVNIGNPGEFTMLELA 277 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~s~~e~~ 277 (343)
.+.+++|+|++++.++.... +..+++.++..+.+.+..
T Consensus 217 r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~~~~ 257 (270)
T 1yde_A 217 RMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGCKA 257 (270)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC----
T ss_pred CCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccCcCc
Confidence 25788999999999987532 447888888766654433
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=159.93 Aligned_cols=212 Identities=17% Similarity=0.129 Sum_probs=150.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+.+|+++||||+|+||.++++.|.++| ++|++++|+.... +...+.+. .++.++.+|+.|+.. .+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLL-AEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999 9999999853211 11112222 468899999998732 25
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+|+|||+||...... ..++....++.|+.++..+++++... +.++|++||...++.
T Consensus 81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------------- 143 (263)
T 2a4k_A 81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA----------------- 143 (263)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-----------------
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC-----------------
Confidence 899999999654221 12334567899999999999998764 349999999987621
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.+...|+.+|...+.+.+.++.+. |+++.+++||.+.++...... ...........+. ..+.++
T Consensus 144 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~~~~~p 210 (263)
T 2a4k_A 144 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP----PWAWEQEVGASPL---------GRAGRP 210 (263)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC----HHHHHHHHHTSTT---------CSCBCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC----HHHHHHHHhcCCC---------CCCcCH
Confidence 123569999999999988887664 799999999999987532111 1222222222111 136789
Q ss_pred HHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 245 SDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+|+|++++.++.... +..+++.++..+
T Consensus 211 ~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 211 EEVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 999999999997542 446777776544
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=156.01 Aligned_cols=215 Identities=11% Similarity=-0.016 Sum_probs=153.6
Q ss_pred cCCCEEEEEcCchh--HHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc---------
Q 019309 27 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL--------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--------- 92 (343)
+.+|++|||||+|+ ||.++++.|.++| ++|++++|... ..+..... ....++.++.+|++++..
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGER-LEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchH-HHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999 9999999999999 99999988531 11222222 222368999999998732
Q ss_pred ---CCCCEEEEecCCCCc-----c---ccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~-----~---~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e 158 (343)
..+|++||+||.... . ....+....++.|+.++..+++++...- .++|++||...+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 153 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL--------- 153 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS---------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc---------
Confidence 269999999996541 1 1223445678999999999999997652 3899999988763
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++...... .............+.
T Consensus 154 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~------ 218 (266)
T 3oig_A 154 -------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS--DFNSILKDIEERAPL------ 218 (266)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--THHHHHHHHHHHSTT------
T ss_pred -------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--chHHHHHHHHhcCCC------
Confidence 33344679999999999999888764 799999999999886532211 112233333222211
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
..+.+++|+|++++.++.... +..+++.+|..
T Consensus 219 ---~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 219 ---RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFH 254 (266)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeE
Confidence 135788999999999997543 44777777643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=156.92 Aligned_cols=221 Identities=11% Similarity=0.015 Sum_probs=151.6
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc---------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL--------- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--------- 92 (343)
+.+.+|++|||||+|.||.++++.|.++| ++|++++|+.....+....+ ....++.++.+|+.|...
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999999999 99999998532221111111 222358899999998732
Q ss_pred ---CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|++||+||...... ..++....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 151 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ----------- 151 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----------
Confidence 36999999999654322 2344567889999999999998853 334 899999987763
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC---C---ccHHHHHHHHHHcCCCeEE
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID---D---GRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~---~---~~~~~~~~~~~~~~~~~~~ 231 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++..... . ......+..........+
T Consensus 152 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 225 (265)
T 3lf2_A 152 -----PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIP- 225 (265)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCT-
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCC-
Confidence 33345679999999999999888764 79999999999987531000 0 000011111111111111
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
...+..++|+|++++.++.... +..+++.+|.
T Consensus 226 ------~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 226 ------LGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGL 261 (265)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSC
T ss_pred ------cCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCC
Confidence 1236789999999999997543 3467777654
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=155.69 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=141.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc--------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------- 92 (343)
|++|++|||||+|+||+++++.|.++| ++|++++|+..... ....++.+|+.++..
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999 99999998643211 135677889987621
Q ss_pred CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|+|||+||..... ....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--------------- 135 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG--------------- 135 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc---------------
Confidence 3799999999965421 123345677899999999999998764 23899999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. |+++.+++|+++.++. ........ ...
T Consensus 136 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~------------~~~~~~~~---------~~~ 193 (236)
T 1ooe_A 136 -PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPNA---------DHS 193 (236)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTTC---------CGG
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc------------hhhcCCCc---------ccc
Confidence 33345679999999999999988765 4999999999987752 11111111 112
Q ss_pred eeeehHHHHHHHHHHHhcCC-----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN-----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~-----~~~~~~~~~ 268 (343)
.+++.+|+|++++.++..+. +..+.+.++
T Consensus 194 ~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg 227 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTETSSRPSSGALLKITTE 227 (236)
T ss_dssp GCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHcCCCcccccccEEEEecC
Confidence 35678999999997773221 335555544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=162.01 Aligned_cols=205 Identities=15% Similarity=0.043 Sum_probs=141.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 92 (343)
+.+|+||||||+|+||+++++.|+++| ++|++++|+............ ....+.++.+|+.++..
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 999999985321111111110 11357889999998732
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHH----HHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~----~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|+|||+||...... ...+....++.|+.+ +..++..+++.+ .+||++||...+..
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---------- 178 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------- 178 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc----------
Confidence 26999999999654322 223456778999999 677777787776 48999999987632
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+..+...|+.+|...+.+.+.++.+ .++++.+++|+.+.++......... ...+. . .
T Consensus 179 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~-~~~~~---~---------~ 241 (279)
T 1xg5_A 179 ----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKD-PEKAA---A---------T 241 (279)
T ss_dssp ----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTC-HHHHH---H---------H
T ss_pred ----CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccC-hhHHh---h---------h
Confidence 13334467999999999988887765 3699999999999876310000000 00000 0 0
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
.....+++++|+|++++.++..+.
T Consensus 242 ~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 242 YEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp HC---CBCHHHHHHHHHHHHHSCT
T ss_pred cccccCCCHHHHHHHHHHHhcCCc
Confidence 012246889999999999998754
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=154.96 Aligned_cols=203 Identities=16% Similarity=0.111 Sum_probs=147.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHh-cCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc----------CCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL----------IEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~d 96 (343)
.+|++|||||+|+||+++++.|.+ .| +.|++++|..... ...+.++.+|+.|+.. .++|
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id 72 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFD 72 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCC
Confidence 567899999999999999999999 67 8999888753211 2357889999998621 2699
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
++||+||...... ..++....++.|+.++..+++++...- .++|++||...+. +..+
T Consensus 73 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~ 136 (244)
T 4e4y_A 73 GIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI----------------AKPN 136 (244)
T ss_dssp EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC----------------CCTT
T ss_pred EEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc----------------CCCC
Confidence 9999999754322 233456778999999999999987652 3799999988763 3334
Q ss_pred CCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHH-----------HHHHHHcCCCeEEecCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSN-----------FIAQALRGEPLTVQKPG 235 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 235 (343)
...|+.+|...+.+.+.++.+ +|+++..++||.+.++.. ...... .........
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 204 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLY----RNLIQKYANNVGISFDEAQKQEEKEF-------- 204 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHH----HHHHHHHHHHHTCCHHHHHHHHHTTS--------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhh----HHHHHhhhhhcCCCHHHHHHHHhhcC--------
Confidence 467999999999999988874 489999999999987631 111111 111111111
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
....+.+++|+|++++.++.... +..+++.++.
T Consensus 205 -p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 205 -PLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 12247889999999999997543 4477777664
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=154.66 Aligned_cols=220 Identities=9% Similarity=-0.029 Sum_probs=155.3
Q ss_pred hhhccCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhhhc--CCCceEEEEcccCCccc-----
Q 019309 23 SKFFQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKKWI--GHPRFELIRHDVTEPLL----- 92 (343)
Q Consensus 23 ~~~~~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~d~~~~~~----- 92 (343)
..+...+|+++||||+ |+||.+++++|.++| ++|+++.|..... .+....+. ...++.++.+|+.+...
T Consensus 14 ~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (267)
T 3gdg_A 14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLV 92 (267)
T ss_dssp HHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHH
T ss_pred cccCcCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHH
Confidence 4455688999999999 999999999999999 9999998864333 12222211 13578899999998732
Q ss_pred -------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCC
Q 019309 93 -------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 93 -------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~ 156 (343)
.++|+|||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+..
T Consensus 93 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------ 166 (267)
T 3gdg_A 93 KDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIA------ 166 (267)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccccccc------
Confidence 36899999999654322 23445678899999999998887 44454 9999999876532
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
....+...|+.+|...+.+.+.++.+.+ +++..+.||.+..+..... ............
T Consensus 167 --------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~------- 227 (267)
T 3gdg_A 167 --------NFPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV----PKETQQLWHSMI------- 227 (267)
T ss_dssp --------CSSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS----CHHHHHHHHTTS-------
T ss_pred --------CCCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC----CHHHHHHHHhcC-------
Confidence 1112346799999999999999988764 7899999999887643211 112222222221
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
....+.+++|+|++++.++.... +..+++.+|..
T Consensus 228 --~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 228 --PMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp --TTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred --CCCCCcCHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 12246788999999999997543 44777777643
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=158.78 Aligned_cols=222 Identities=18% Similarity=0.120 Sum_probs=152.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC---------Cccchhhh---c--CCCceEEEEcccCCccc
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG---------SKDNLKKW---I--GHPRFELIRHDVTEPLL 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------~~~~~~~~---~--~~~~~~~~~~d~~~~~~ 92 (343)
+.+|++|||||+|.||.++++.|.++| ++|++++|.... ..+.+... + ....+.++.+|+.|...
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 367899999999999999999999999 999999884210 11111111 1 13578899999998732
Q ss_pred ------------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCC
Q 019309 93 ------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGD 150 (343)
Q Consensus 93 ------------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~ 150 (343)
.++|++||+||...... ..++....++.|+.++..+++++. +.+ .++|++||...+.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~- 166 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK- 166 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC-
Confidence 36999999999765322 234556778999999999888754 333 3899999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE 227 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++... ...............
T Consensus 167 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~ 228 (277)
T 3tsc_A 167 ---------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGS---GDMVTAVGQAMETNP 228 (277)
T ss_dssp ---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGS---HHHHHHHHHHHHTCG
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCccc---chhhhhhhhcccccH
Confidence 33344679999999999999888764 799999999999887521 111111121111111
Q ss_pred Ce-EEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 228 PL-TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 228 ~~-~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.. ...... ....+.+++|+|++++.++.... +..+++.++.
T Consensus 229 ~~~~~~~~~-~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 229 QLSHVLTPF-LPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp GGTTTTCCS-SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHhhhc-cCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 10 001111 11247899999999999997543 4467777664
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=165.16 Aligned_cols=213 Identities=16% Similarity=0.054 Sum_probs=136.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCccc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~------------ 92 (343)
.+++||||||+|+||.++++.|+++| ++|++++|+..........+ .....+.++.+|+++...
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999 99999998542221111111 111278999999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-----------CCeEEEEeCCcccCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-----------~~r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+|||+||...... ..++....+++|+.++.++++++... +.+||++||...+.
T Consensus 86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~-------- 157 (319)
T 3ioy_A 86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL-------- 157 (319)
T ss_dssp CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC--------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc--------
Confidence 36899999999654322 22345678899999999998887543 23799999998764
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+.+.++.+ .|+++.+++||.|.++...... .....+..............
T Consensus 158 --------~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 227 (319)
T 3ioy_A 158 --------AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDD--IRPDALKGEVKPVDKTAVER 227 (319)
T ss_dssp --------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC------------------------------
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccc--cCchhhcccccchhHHHHHH
Confidence 2233467999999777777766554 3899999999999887532110 00111110000000000000
Q ss_pred Cc-eeEeeeehHHHHHHHHHHHhcCC
Q 019309 235 GT-QTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 235 ~~-~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
.. .....++++|+|++++.+++++.
T Consensus 228 ~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 228 LAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp -CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 00 11112799999999999999754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=157.88 Aligned_cols=217 Identities=16% Similarity=0.082 Sum_probs=151.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||++++++|.++| ++|+++++......+.+...+ ...++.++.+|+.|...
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999 999998764322222222211 12568899999998732
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
.++|++||+||...... ..++....++.|+.++..+++++... +.++|++||..... .
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------~ 159 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD---------------F 159 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------------C
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------------C
Confidence 26999999999764322 33455678899999999999998765 33899999976321 1
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC------C--ccHHHHHHHHHHcCCCeEEecC
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID------D--GRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++..... . ...............+
T Consensus 160 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 233 (270)
T 3is3_A 160 SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP------ 233 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC------
Confidence 3334567999999999999998877 489999999999988752100 0 0001111111111111
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
...+.+++|+|++++.++.... +..+++.+|
T Consensus 234 ---~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 268 (270)
T 3is3_A 234 ---LHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG 268 (270)
T ss_dssp ---TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCC
Confidence 1236779999999999997543 446777665
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=158.24 Aligned_cols=212 Identities=19% Similarity=0.146 Sum_probs=148.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCC----cc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTE----PL-------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~----~~-------- 91 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|......+.+...+ ...++.++.+|+.+ +.
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~ 99 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS 99 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence 578999999999999999999999999 999999985411111111111 12468899999998 42
Q ss_pred ----cCCCCEEEEecCCCCccc--------------cccChHHHHHHHHHHHHHHHHHHHHc----C------C-eEEEE
Q 019309 92 ----LIEVDQIYHLACPASPIF--------------YKYNPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLT 142 (343)
Q Consensus 92 ----~~~~d~vi~~a~~~~~~~--------------~~~~~~~~~~~nv~~~~~l~~~a~~~----~------~-r~i~~ 142 (343)
..++|+|||+||...... ...+....++.|+.++..+++++... + . ++|++
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i 179 (288)
T 2x9g_A 100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL 179 (288)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence 126999999999654221 12234567889999999998887532 2 4 89999
Q ss_pred eCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHH
Q 019309 143 STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNF 219 (343)
Q Consensus 143 SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~ 219 (343)
||...+. +..+...|+.+|...+.+.+.++.+. |+++.+++||.++++. .. . ...
T Consensus 180 sS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~-~----~~~ 237 (288)
T 2x9g_A 180 CDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM-G----EEE 237 (288)
T ss_dssp CCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS-C----HHH
T ss_pred ecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc-C----hHH
Confidence 9988763 23344679999999999998888764 8999999999999986 21 1 111
Q ss_pred HHHHHcCCCeEEecCCceeEee-eehHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 220 IAQALRGEPLTVQKPGTQTRSF-CYVSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~-v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
........+. ..+ ..++|+|++++.++.... .| .+++.++..
T Consensus 238 ~~~~~~~~p~---------~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 238 KDKWRRKVPL---------GRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHHHTCTT---------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHhhCCC---------CCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 2222222111 114 688999999999997532 34 566666543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=158.79 Aligned_cols=213 Identities=13% Similarity=0.024 Sum_probs=149.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe-cCCCCCccchhhh--cCCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD-NYFTGSKDNLKKW--IGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~------------ 91 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++ |+..........+ ....++.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 467899999999999999999999999 9999998 7432111111111 01246889999999876
Q ss_pred -----c------------CCCCEEEEecCCCCcccc------------------ccChHHHHHHHHHHHHHHHHHHH---
Q 019309 92 -----L------------IEVDQIYHLACPASPIFY------------------KYNPVKTIKTNVIGTLNMLGLAK--- 133 (343)
Q Consensus 92 -----~------------~~~d~vi~~a~~~~~~~~------------------~~~~~~~~~~nv~~~~~l~~~a~--- 133 (343)
. .++|+||||||....... ..+....+++|+.++..+++++.
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 269999999996532211 23345678999999999888775
Q ss_pred -HcC------C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEecc
Q 019309 134 -RVG------A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFN 202 (343)
Q Consensus 134 -~~~------~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~ 202 (343)
+.+ . +||++||...+. +..+...|+.+|...+.+.+.++.+. |+++..++||+
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~ 266 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 266 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCc
Confidence 334 4 899999987663 23344679999999999999888764 89999999999
Q ss_pred ccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 203 TYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 203 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
+.++. .. . ...........++ + ..+..++|+|++++.++.... +..+++.++..
T Consensus 267 v~T~~-~~-~----~~~~~~~~~~~p~-----~---~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 267 SVLVD-DM-P----PAVWEGHRSKVPL-----Y---QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324 (328)
T ss_dssp BSCCC-CS-C----HHHHHHHHTTCTT-----T---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCc-cc-c----HHHHHHHHhhCCC-----C---CCCCCHHHHHHHHHHHhCccccCccCcEEEECCCcc
Confidence 99876 21 1 2222333222111 0 025788999999999996432 34667766643
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=154.17 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=138.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
|.+|++|||||+|+||++++++|.++| ++|++++|+..... .....+. .++.++.+|++|+.. .+
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQ-QQELLLG-NAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHHG-GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999999 99999998532211 1222222 268999999998632 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|++||+||...... ..++....++.|+.++..+++++.. .+.++|++||...+. +
T Consensus 78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 141 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------G 141 (235)
T ss_dssp CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------S
T ss_pred CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------C
Confidence 899999999653221 3345567889999999998888743 223899999987653 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+.+.++.+. |+++..++||.+..+.... ... . ....+.+
T Consensus 142 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--------~~~-------~-------~~~~~~~ 199 (235)
T 3l6e_A 142 KANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN--------TDH-------V-------DPSGFMT 199 (235)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------CBC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc--------cCC-------C-------CCcCCCC
Confidence 2334679999999999999998764 7999999999997764210 000 0 1114788
Q ss_pred hHHHHHHHHHHHhcCC
Q 019309 244 VSDMVDGLIRLMEGEN 259 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~ 259 (343)
++|+|++++.++..+.
T Consensus 200 pedvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 200 PEDAAAYMLDALEARS 215 (235)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998655
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=154.17 Aligned_cols=217 Identities=17% Similarity=0.113 Sum_probs=152.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC------------ccchhh---hc--CCCceEEEEcccCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------------KDNLKK---WI--GHPRFELIRHDVTEP 90 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------~~~~~~---~~--~~~~~~~~~~d~~~~ 90 (343)
.+|++|||||+|.||.++++.|.++| ++|++++|..... .+.+.. .+ ...++.++.+|+.|+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 67999999999999999999999999 9999998863211 111111 11 124688999999987
Q ss_pred cc------------CCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcc
Q 019309 91 LL------------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEV 147 (343)
Q Consensus 91 ~~------------~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v 147 (343)
.. .++|++||+||...... ..++....++.|+.++..+++++.. .+ .++|++||...
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 168 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG 168 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 32 27999999999654322 2345567889999999999888753 23 38999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHH-----
Q 019309 148 YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNF----- 219 (343)
Q Consensus 148 ~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~----- 219 (343)
+. +......|+.+|...+.+.+.++.+ .|+++..++||.|.++..... .....+
T Consensus 169 ~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~ 230 (286)
T 3uve_A 169 LK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNE--GTFKMFRPDLE 230 (286)
T ss_dssp TS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSH--HHHHHHCTTSS
T ss_pred cc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCccccc--chhhhcccccc
Confidence 63 3334467999999999999988876 579999999999998763210 000000
Q ss_pred ------HHHH-HcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 220 ------IAQA-LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 220 ------~~~~-~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.... .....+ . ..+.+++|+|++++.++.... +..+++.+|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~-------p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 231 NPGPDDMAPICQMFHTL-------P-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSCL 285 (286)
T ss_dssp SCCHHHHHHHHHTTCSS-------S-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ccchhhHHHHHHhhhcc-------C-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCcccc
Confidence 0000 011111 1 347899999999999997543 457888877543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=155.86 Aligned_cols=210 Identities=15% Similarity=0.047 Sum_probs=146.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEccc--CCcc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDV--TEPL----------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~--~~~~----------- 91 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+....+. ....+.++.+|+ .+..
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999 999999985322111111111 123678899999 6542
Q ss_pred -cCCCCEEEEecCCCCc--c---ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~--~---~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..++|++||+||.... . ...++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 157 (252)
T 3f1l_A 89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ----------- 157 (252)
T ss_dssp HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-----------
Confidence 2369999999996432 1 122344577899999999999988 44454 999999987653
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+..+...|+.+|...+.+.+.++.+++ +++..+.||.+..+. ........ ..
T Consensus 158 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------------~~~~~~~~---------~~ 211 (252)
T 3f1l_A 158 -----GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------------RASAFPTE---------DP 211 (252)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------------HHHHCTTC---------CG
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------------hhhhCCcc---------ch
Confidence 333446799999999999999998764 788888998776531 11111111 11
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHH
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTML 274 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~ 274 (343)
..+.+++|+|++++.++.... +..+++.+|...++.
T Consensus 212 ~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 212 QKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred hccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 236788999999999997643 457888887766554
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-20 Score=157.62 Aligned_cols=215 Identities=20% Similarity=0.157 Sum_probs=152.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-----------CCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-----------IEV 95 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 95 (343)
..++++|||||+|+||.++++.|+++| ++|++++|+..... .+...+ ..++.++.+|+.+... .++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i 104 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAAEKGK-ALADEL-GNRAEFVSTNVTSEDSVLAAIEAANQLGRL 104 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHH-CTTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHH-HHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999999999 99999998532221 122222 2478999999998632 368
Q ss_pred CEEEEe-cCCCCcc---------ccccChHHHHHHHHHHHHHHHHHHHH----------cCC-eEEEEeCCcccCCCCCC
Q 019309 96 DQIYHL-ACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKR----------VGA-RILLTSTSEVYGDPLIH 154 (343)
Q Consensus 96 d~vi~~-a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~a~~----------~~~-r~i~~SS~~v~~~~~~~ 154 (343)
|++||+ ++..... ....+....++.|+.++.++++++.. .+. ++|++||...+.
T Consensus 105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 179 (281)
T 3ppi_A 105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE----- 179 (281)
T ss_dssp EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS-----
T ss_pred CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC-----
Confidence 999999 4432211 11223467889999999999888752 223 899999998763
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.|.++.... .............+.
T Consensus 180 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~-- 242 (281)
T 3ppi_A 180 -----------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES----VGEEALAKFAANIPF-- 242 (281)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----TCHHHHHHHHHTCCS--
T ss_pred -----------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc----ccHHHHHHHHhcCCC--
Confidence 33345679999999999998888764 7999999999997753211 112222333332211
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccC
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFT 272 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s 272 (343)
...+.+++|+|++++.++.... +..+++.++..++
T Consensus 243 ------~~~~~~pedvA~~v~~l~s~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 ------PKRLGTPDEFADAAAFLLTNGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp ------SSSCBCHHHHHHHHHHHHHCSSCCSCEEEESTTCCCC
T ss_pred ------CCCCCCHHHHHHHHHHHHcCCCcCCcEEEECCCcccC
Confidence 0247889999999999998654 4477888776554
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=159.03 Aligned_cols=217 Identities=13% Similarity=0.094 Sum_probs=150.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--------ccchhhh-----cCCCceEEEEcccCCccc--
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--------KDNLKKW-----IGHPRFELIRHDVTEPLL-- 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~~-----~~~~~~~~~~~d~~~~~~-- 92 (343)
.+|++|||||+|+||.++++.|.++| ++|++++|..... .+.+... ....++.++.+|+.|+..
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 67899999999999999999999999 9999998752211 1111111 113468899999998732
Q ss_pred ----------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEeCCcccCCCC
Q 019309 93 ----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPL 152 (343)
Q Consensus 93 ----------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~--~r~i~~SS~~v~~~~~ 152 (343)
.++|++||+||...... ..++....+++|+.++..+++++.. .+ .+||++||...+.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~--- 200 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR--- 200 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC---
Confidence 36999999999664322 2345567889999999998888743 33 3899999988763
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHH----------
Q 019309 153 IHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNF---------- 219 (343)
Q Consensus 153 ~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~---------- 219 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||+|.++.... ......+
T Consensus 201 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~ 265 (317)
T 3oec_A 201 -------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALN--EKLLKMFLPHLENPTRE 265 (317)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHC--HHHHHHHCTTCSSCCHH
T ss_pred -------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccc--hhhhhhhhhhccccchh
Confidence 23344679999999999999988774 8999999999998864110 0000000
Q ss_pred -HHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 220 -IAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
........ . .....+++++|+|++++.++.... +..+++.+|..
T Consensus 266 ~~~~~~~~~------~-~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 266 DAAELFSQL------T-LLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHTTT------C-SSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHhhh------c-cCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 00001110 0 011457899999999999986543 45788877654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=151.30 Aligned_cols=193 Identities=12% Similarity=0.039 Sum_probs=139.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCccc------------CC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPLL------------IE 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~------------~~ 94 (343)
+|++|||||+|+||.+++++|.++| ++|++++|+........... ....++.++.+|++++.. .+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999 99999998532221111111 113578899999998731 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|++||+||...... ..++....++.|+.++..+++++.. .+.++|++||...+. +
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~----------------~ 144 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR----------------L 144 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------------C
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc----------------c
Confidence 999999999754322 3345567889999999999988854 345788887766542 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH-hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ-HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~-~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
......|+.+|...+.+.+.+..+ .++++..++||.+..+...... .......++.++
T Consensus 145 ~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~---------------------~~~~~~~~~~p~ 203 (235)
T 3l77_A 145 IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP---------------------GKPKEKGYLKPD 203 (235)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS---------------------CCCGGGTCBCHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC---------------------CcccccCCCCHH
Confidence 222357999999999999887544 3899999999998776421110 000111468899
Q ss_pred HHHHHHHHHHhcCC
Q 019309 246 DMVDGLIRLMEGEN 259 (343)
Q Consensus 246 D~a~~i~~~~~~~~ 259 (343)
|+|++++.++..+.
T Consensus 204 dva~~v~~l~~~~~ 217 (235)
T 3l77_A 204 EIAEAVRCLLKLPK 217 (235)
T ss_dssp HHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999766
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=151.13 Aligned_cols=204 Identities=12% Similarity=0.045 Sum_probs=142.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
+++|++|||||+|+||+++++.|.++| ++|++++|+..........+. ...++.++.+|+.|+.. .
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999 999999985322111111111 12468889999998632 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
++|++||+||...... ...+....++.|+.++..+++++.. .+.++|++||...+.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (247)
T 2jah_A 84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV---------------- 147 (247)
T ss_dssp CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC----------------
Confidence 7999999999653221 2234456789999999999888753 335899999987653
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++.............+... + + ++.++
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~----~----~----~~~~~ 215 (247)
T 2jah_A 148 NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQR----I----S----QIRKL 215 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHH----T----T----TSCCB
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhc----c----c----ccCCC
Confidence 2233467999999999998888765 489999999999988753211111111111110 0 0 11157
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
+++|+|++++.++..+.
T Consensus 216 ~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 216 QAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 89999999999998654
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=152.99 Aligned_cols=195 Identities=15% Similarity=0.086 Sum_probs=142.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------c--
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------L-- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~-- 92 (343)
.++|+||||||+|+||+++++.|.++| ++|++++|+..... ....++.+|+.|+. +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 74 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGD 74 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999 99999998643211 13567789998762 1
Q ss_pred CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|+|||+||..... ....+....++.|+.++..+++++... +.++|++||...+.
T Consensus 75 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 139 (241)
T 1dhr_A 75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD--------------- 139 (241)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred CCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc---------------
Confidence 3799999999965421 122345677889999999999998764 23899999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+-.+. ........ ...
T Consensus 140 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------------~~~~~~~~---------~~~ 197 (241)
T 1dhr_A 140 -GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFS 197 (241)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGG
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc------------ccccCcch---------hhc
Confidence 22344679999999999999987653 5999999999876542 11111111 112
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
..++.+|+|++++.++.... ++.+.+.++
T Consensus 198 ~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~ 230 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITGNKRPNSGSLIQVVTT 230 (241)
T ss_dssp GSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCcCccceEEEEeCC
Confidence 35778999999999997543 345566544
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-20 Score=158.10 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=143.9
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCccc---------
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPLL--------- 92 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~--------- 92 (343)
+..+.+|+||||||+|+||.++++.|.++| ++|++++|+........... ....++.++.+|+.|...
T Consensus 23 ~~~~~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 23 PEMLQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhhcCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 344678999999999999999999999999 99999998532211111111 112368899999998631
Q ss_pred ---CCCCEEEEe-cCCCCccc---cccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHL-ACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 ---~~~d~vi~~-a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|+|||+ +|...... ...+....++.|+.++..+++++.. .+.++|++||...+.
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------ 169 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------------ 169 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS------------
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc------------
Confidence 269999999 56443211 1233456789999999998887753 334999999987753
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...|.+++.+..+. ++++++++||.+.++. . .....+ .
T Consensus 170 ----~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~--------~----~~~~~~---------~ 224 (286)
T 1xu9_A 170 ----AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET--------A----MKAVSG---------I 224 (286)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------H----HHHSCG---------G
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh--------H----HHhccc---------c
Confidence 22344679999999999998887664 7999999999886642 1 111111 1
Q ss_pred eeEeeeehHHHHHHHHHHHhcCCCcceE
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGENTGPVN 264 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~~~~~~ 264 (343)
....+++++|+|+.++.+++.+..+.|.
T Consensus 225 ~~~~~~~~~~vA~~i~~~~~~~~~~~~~ 252 (286)
T 1xu9_A 225 VHMQAAPKEECALEIIKGGALRQEEVYY 252 (286)
T ss_dssp GGGGCBCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCceEEe
Confidence 1234688999999999999876655543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=150.91 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=136.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~d~ 97 (343)
|+++||||+|+||+++++.|.++| ++|++++|+.... +.+...+. .++.++.+|+.|+. ..++|+
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 77 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERL-QELKDELG-DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI 77 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHC-TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 679999999999999999999999 9999999853211 11222222 46889999999862 226999
Q ss_pred EEEecCCCC-c----cccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 98 IYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 98 vi~~a~~~~-~----~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
+||+||... . ....++....++.|+.++..+++++. +.+. ++|++||...+. +.
T Consensus 78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~ 141 (248)
T 3asu_A 78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY 141 (248)
T ss_dssp EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CC
T ss_pred EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc----------------CC
Confidence 999999642 1 11233456788999999988888775 4454 999999987753 22
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccC-CCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYG-PRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
.+...|+.+|...+.+.+.++.+. |+++..++||.+.| +.... ..... .... . ... ....+++
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~----~~~~~-~~~~--~--~~~----~~~~~~~ 208 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV----RFKGD-DGKA--E--KTY----QNTVALT 208 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------CCBC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh----cccCc-hHHH--H--HHH----hccCCCC
Confidence 334679999999999999988764 79999999999984 43110 00000 0000 0 000 0112468
Q ss_pred hHHHHHHHHHHHhcCC
Q 019309 244 VSDMVDGLIRLMEGEN 259 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~ 259 (343)
++|+|++++.++..+.
T Consensus 209 p~dvA~~v~~l~s~~~ 224 (248)
T 3asu_A 209 PEDVSEAVWWVSTLPA 224 (248)
T ss_dssp HHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999998654
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=159.07 Aligned_cols=215 Identities=11% Similarity=0.039 Sum_probs=136.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------c-CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------L-IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-~~~d~vi~ 100 (343)
|+||||||+|+||+++++.|.++| ++|++++|+...... . +.+|+.+.. + .++|+|||
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~ 68 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLVL 68 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 689999999999999999999999 999999985432110 1 456776542 2 46799999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC------------C
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG------------N 163 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~------------~ 163 (343)
+||.... .......++.|+.++..+++++. +.+. ++|++||...+......+..+.... .
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T 1fjh_A 69 CAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145 (257)
T ss_dssp CCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhc
Confidence 9986531 23477889999999999988885 4444 9999999988742211111110000 0
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
..+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+.++..... ............ + ......
T Consensus 146 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~--~-----~~~~~~ 215 (257)
T 1fjh_A 146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG---LQDPRYGESIAK--F-----VPPMGR 215 (257)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------C-----CCSTTS
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---ccchhHHHHHHh--c-----ccccCC
Confidence 012224467999999999999887765 589999999999988752110 000000100000 0 001113
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
+++++|+|++++.++..+. .| .+++.++..
T Consensus 216 ~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 216 RAEPSEMASVIAFLMSPAASYVHGAQIVIDGGID 249 (257)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 7899999999999997642 34 566666543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=154.39 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=134.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~~d 96 (343)
|++|||||+|+||+++++.|.++| ++|++++|+..... .+...+. ..++.++.+|+.|+. +.++|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 99 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQ-ALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLR 99 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999 99999998532211 1111111 136889999999863 23589
Q ss_pred EEEEecCCCCc-c----ccccChHHHHHHHHHHHHHHHHHHH----HcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 97 ~vi~~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|||+||.... . ....+....++.|+.++..+++++. +.+ . ++|++||...+.
T Consensus 100 ~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~---------------- 163 (272)
T 2nwq_A 100 GLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW---------------- 163 (272)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS----------------
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc----------------
Confidence 99999996532 1 1223456678999999887766663 333 4 899999987763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.+.++.... .... . ......... ...++
T Consensus 164 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~----~~~~---~--~~~~~~~~~----~~~~~ 230 (272)
T 2nwq_A 164 PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV----RFGG---D--QARYDKTYA----GAHPI 230 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------------CCCCB
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc----cccc---c--hHHHHHhhc----cCCCC
Confidence 2233467999999999999988865 47999999999998764210 0000 0 000000000 11247
Q ss_pred ehHHHHHHHHHHHhcCC
Q 019309 243 YVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~ 259 (343)
.++|+|++++.++..+.
T Consensus 231 ~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 231 QPEDIAETIFWIMNQPA 247 (272)
T ss_dssp CHHHHHHHHHHHHTSCT
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 89999999999998654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=157.20 Aligned_cols=215 Identities=15% Similarity=0.055 Sum_probs=150.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-----------CC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL-----------IE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~-----------~~ 94 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+............ ....+.++.+|+.+... .+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999 999999996544333222221 13578899999998732 26
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||...... ..++....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 173 (275)
T 4imr_A 110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR---------------- 173 (275)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence 999999999654322 22344567899999999998887 34455 999999988763
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeEee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE-PLTVQKPGTQTRSF 241 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 241 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.++..... ............... ++ ..+
T Consensus 174 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~p~---------~r~ 243 (275)
T 4imr_A 174 PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADR-RAQDPEGWDEYVRTLNWM---------GRA 243 (275)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHH-HHHCHHHHHHHHHHHSTT---------CSC
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccc-cccChHHHHHHHhhcCcc---------CCC
Confidence 33334569999999999999988775 79999999999987531000 000011111111110 11 125
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
..++|+|++++.++.... +..+++.+|
T Consensus 244 ~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 244 GRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred cCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 678999999999997543 446666654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=159.83 Aligned_cols=203 Identities=15% Similarity=0.003 Sum_probs=143.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh-cCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|+||||||+|+||+++++.|++ +| ++|++++|...........+. ...++.++.+|+.+...
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999 89 999999985322111111111 12468899999998632
Q ss_pred CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCC-C----------CC
Q 019309 93 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDP-L----------IH 154 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~-~----------~~ 154 (343)
.++|+|||+||....... ..+....++.|+.++.++++++.+.- .+||++||...+... . ..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~ 160 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence 279999999986543222 23456778999999999999998762 289999998776320 0 01
Q ss_pred CCCCCCCC--------------CCCCCCCCCchHHhHHHHHHHHHHHHHH-------hCCceEEEEeccccCCCCCCCCc
Q 019309 155 PQPETYWG--------------NVNPIGVRSCYDEGKRVAETLMFDYHRQ-------HGIQIRIARIFNTYGPRMNIDDG 213 (343)
Q Consensus 155 ~~~e~~~~--------------~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~~~~~i~R~~~v~G~~~~~~~~ 213 (343)
++.|+.+. ...+..|...|+.+|...|.+++.++.+ .++++.+++||+|.++....
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~--- 237 (276)
T 1wma_A 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP--- 237 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT---
T ss_pred ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc---
Confidence 12222100 0011223478999999999999888765 48999999999998764210
Q ss_pred cHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 214 RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
..+.+++|+|++++.++..+
T Consensus 238 -------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 -------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp -------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred -------------------------cccCChhHhhhhHhhhhcCc
Confidence 12678999999999999744
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=156.54 Aligned_cols=202 Identities=14% Similarity=0.064 Sum_probs=138.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+.....+...... ....+.++.+|++|+..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999 999999985322111111110 11235889999998732
Q ss_pred CCCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcC--C-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG--A-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
.++|+||||||..... ...++....+++|+.++..+.+++. +.+ . ++|++||...+.
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------- 178 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT----------- 178 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC-----------
Confidence 3689999999965321 1234456688999999887777664 333 3 899999987652
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+..+...|+.+|...+.+.+.++.+ .|+++..++||.|..+... ..... .........
T Consensus 179 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~------------~~~~~--~~~~~~~~~ 239 (281)
T 4dry_A 179 -----PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA------------RMSTG--VLQANGEVA 239 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------------------CE--EECTTSCEE
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh------------hhcch--hhhhhhccc
Confidence 3344567999999999999988866 5899999999999876411 01000 000001112
Q ss_pred eEeeeehHHHHHHHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...++.++|+|++++.++..+.
T Consensus 240 ~~~~~~pedvA~~v~fL~s~~~ 261 (281)
T 4dry_A 240 AEPTIPIEHIAEAVVYMASLPL 261 (281)
T ss_dssp ECCCBCHHHHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHhCCCc
Confidence 2347889999999999999776
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=153.71 Aligned_cols=195 Identities=15% Similarity=0.073 Sum_probs=138.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---c-CCCceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---I-GHPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~---------- 92 (343)
..+|++|||||+|+||.++++.|.++| ++|++++|+.....+..... . ...++.++.+|+.|...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999 99999998532211111111 1 11578899999998632
Q ss_pred --CCCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 150 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY------------- 150 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-------------
Confidence 36999999999754322 22344577899999999988887 34455 999999987652
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+..+. .... .... ...
T Consensus 151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------~~~~--~~~~-------~~~ 206 (250)
T 3nyw_A 151 ---GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------------AKKA--GTPF-------KDE 206 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH------------HHHT--TCCS-------CGG
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch------------hhhc--CCCc-------ccc
Confidence 12235679999999999999888764 7999999999886642 1111 1111 112
Q ss_pred eeeehHHHHHHHHHHHhcCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~ 259 (343)
.+++++|+|++++.++..+.
T Consensus 207 ~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 207 EMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp GSBCHHHHHHHHHHHHTSCT
T ss_pred cCCCHHHHHHHHHHHHcCCC
Confidence 47899999999999998665
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=150.19 Aligned_cols=215 Identities=14% Similarity=0.035 Sum_probs=149.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCccc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|+++.+......+.....+ ....+.++.+|+.+...
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999 998886543222111111111 13467889999988631
Q ss_pred ------CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHHc--C-CeEEEEeCCcccCCCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~~--~-~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
..+|++||+||....... ..+....++.|+.++..+++++... + .++|++||...+.
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~---------- 153 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------- 153 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS----------
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc----------
Confidence 139999999996543222 2234567889999999999999765 2 3899999988763
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.+.++........ ...........+
T Consensus 154 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~-------- 217 (255)
T 3icc_A 154 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD--PMMKQYATTISA-------- 217 (255)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS--HHHHHHHHHTST--------
T ss_pred ------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc--HHHHHhhhccCC--------
Confidence 33334679999999999999888764 89999999999988753321111 111111112111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
...+.+++|+|++++.++.... +..+++.+|.
T Consensus 218 -~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 -FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred -cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 1236788999999999986442 4577877764
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=151.98 Aligned_cols=163 Identities=17% Similarity=0.046 Sum_probs=121.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCccc------------C
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 93 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+..........+.. ..++.++.+|+.++.. .
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999999 9999999853221111111111 2368889999998732 2
Q ss_pred CCCEEEEecCCC-Cccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPA-SPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
++|+|||+||.. .... ..++....++.|+.++..+++++.. .+. ++|++||...+.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 149 (262)
T 1zem_A 84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK-------------- 149 (262)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS--------------
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------------
Confidence 699999999865 2111 2234567789999999998888754 355 999999987763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCC
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGP 206 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~ 206 (343)
+..+...|+.+|...+.+.+.++.+ .|+++.+++||++..+
T Consensus 150 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 150 --GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 2223457999999999988888765 4799999999988765
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=147.78 Aligned_cols=190 Identities=12% Similarity=0.045 Sum_probs=134.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc---------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL---------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~d~vi~ 100 (343)
|+||||||+|+||.++++.|.++| ++|++++|+..... .....+ ..++.++.+|+.+... ...|+|||
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEG-KATYLTGRSESKLS-TVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHHH-HHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 579999999999999999999999 99999998532211 111222 2468899999998632 13599999
Q ss_pred ecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 101 LACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 101 ~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
+||...... ..++....++.|+.++..+++++... +.++|++||...+. +..+...
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~ 142 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQEST 142 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTTCHH
T ss_pred eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCCCch
Confidence 999654322 22344567899999999999887643 33899999988763 3334467
Q ss_pred hHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
|+.+|...+.+.+.++.+. |+++..++||.+..+.... . . ... ....+.+++|+|+
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~----~--~~~-------~~~~~~~~~dvA~ 201 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET--------S----G--KSL-------DTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------CCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh--------c----C--CCC-------CcccCCCHHHHHH
Confidence 9999999999999998875 7999999999887653110 0 0 001 1235789999999
Q ss_pred HHHHHHhcCC
Q 019309 250 GLIRLMEGEN 259 (343)
Q Consensus 250 ~i~~~~~~~~ 259 (343)
+++.++..+.
T Consensus 202 ~i~~l~~~~~ 211 (230)
T 3guy_A 202 MIHGALANIG 211 (230)
T ss_dssp HHHHHCCEET
T ss_pred HHHHHHhCcC
Confidence 9999998654
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=150.93 Aligned_cols=213 Identities=14% Similarity=0.032 Sum_probs=148.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe-cCCCCCccchhhh--cCCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD-NYFTGSKDNLKKW--IGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~------------ 91 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++ |+..........+ ....++.++.+|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 85 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence 367899999999999999999999999 9999998 7432111111111 11246889999999876
Q ss_pred -----c------------CCCCEEEEecCCCCcccc------------------ccChHHHHHHHHHHHHHHHHHHH---
Q 019309 92 -----L------------IEVDQIYHLACPASPIFY------------------KYNPVKTIKTNVIGTLNMLGLAK--- 133 (343)
Q Consensus 92 -----~------------~~~d~vi~~a~~~~~~~~------------------~~~~~~~~~~nv~~~~~l~~~a~--- 133 (343)
. .++|++|||||....... ..+....++.|+.++..+++++.
T Consensus 86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m 165 (291)
T 1e7w_A 86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 165 (291)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 269999999996532211 33445678999999999888875
Q ss_pred -HcC------C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEecc
Q 019309 134 -RVG------A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFN 202 (343)
Q Consensus 134 -~~~------~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~ 202 (343)
+.+ . ++|++||...+. +..+...|+.+|...+.+.+.++.+. |+++..++||.
T Consensus 166 ~~~~~~~~~~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 229 (291)
T 1e7w_A 166 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 229 (291)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCCCCCCCcEEEEEechhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 344 4 899999987763 23344679999999999998888764 79999999999
Q ss_pred ccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 203 TYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 203 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
+..+. . . . ...........++ + ..+..++|+|++++.++.... .| .+++.++..
T Consensus 230 v~T~~-~-~-~---~~~~~~~~~~~p~-----~---~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 230 SVLVD-D-M-P---PAVWEGHRSKVPL-----Y---QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287 (291)
T ss_dssp BCCGG-G-S-C---HHHHHHHHTTCTT-----T---TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCc-c-C-C---HHHHHHHHhhCCC-----C---CCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCcc
Confidence 87664 2 1 1 1222222221111 0 025688999999999997532 44 666666543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=154.48 Aligned_cols=217 Identities=12% Similarity=0.029 Sum_probs=144.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--ccchhhhc--CCCceEEEEcccCCccc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--KDNLKKWI--GHPRFELIRHDVTEPLL---------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~--~~~~~~~~~~d~~~~~~---------- 92 (343)
+.+|++|||||+|.||.++++.|.++| ++|++++|..... .+.+...+ ...++.++.+|+.|+..
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999 9999988742211 11111111 12468899999998732
Q ss_pred --CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc--CC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~--~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++|||||...... ..++....++.|+.++..+++++... +. ++|++||...+.
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~-------------- 153 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA-------------- 153 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH--------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc--------------
Confidence 36999999999654322 22344567889999999999999864 33 899999987763
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+. |+++..++||.|..+...... ................
T Consensus 154 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~------------~~~~~~~~~~~~~~~r 219 (262)
T 3ksu_A 154 --YTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE------------TKESTAFHKSQAMGNQ 219 (262)
T ss_dssp --HHCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------------CCCC
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC------------chHHHHHHHhcCcccC
Confidence 22234569999999999999998875 799999999988664211000 0000000111112234
Q ss_pred eeehHHHHHHHHHHHhcCC---CcceEecCCCccC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TGPVNIGNPGEFT 272 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~s 272 (343)
+.+++|+|++++.++.... +..+++.++....
T Consensus 220 ~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 220 LTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR 254 (262)
T ss_dssp SCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCCC
T ss_pred CCCHHHHHHHHHHHcCCCCCccCCEEEECCCccCC
Confidence 6788999999999998622 3467777665443
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=146.61 Aligned_cols=200 Identities=13% Similarity=-0.006 Sum_probs=142.7
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc------chhhhc--CCCceEEEEcccCCccc----
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------NLKKWI--GHPRFELIRHDVTEPLL---- 92 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------~~~~~~--~~~~~~~~~~d~~~~~~---- 92 (343)
+.+.+|++|||||+|.||.+++++|.++| ++|++++|+.....+ .....+ ...++.++.+|++|+..
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 44578999999999999999999999999 999999997543211 111111 12478899999998732
Q ss_pred --------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCC
Q 019309 93 --------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 93 --------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~ 155 (343)
.++|++|||||...... ..++....+++|+.++..+++++... +. ++|++||...+..
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----- 158 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP----- 158 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-----
Confidence 27999999999764322 22344567789999999999988654 44 8999999875421
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
...+...|+.+|...+.+.+.++.+ .|+++..++||++.... +......... +
T Consensus 159 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~-----------~~~~~~~~~~-~-- 214 (285)
T 3sc4_A 159 ----------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA-----------AVQNLLGGDE-A-- 214 (285)
T ss_dssp ----------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH-----------HHHHHHTSCC-C--
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH-----------HHHhhccccc-c--
Confidence 1123367999999999999998876 58999999998433321 2222222211 1
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+..++|+|++++.++....
T Consensus 215 -----~~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 215 -----MARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp -----CTTCBCTHHHHHHHHHHHTSCT
T ss_pred -----ccCCCCHHHHHHHHHHHhCCcc
Confidence 1235688999999999998754
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=147.83 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=148.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|...... .+.... ..++.++.+|+.+.. ..+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLR-ELEVAH-GGNAVGVVGDVRSLQDQKRAAERCLAAFGK 79 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHT-BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHH-HHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 467999999999999999999999999 99999998532211 111112 247889999999863 236
Q ss_pred CCEEEEecCCCCcccc---------ccChHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY---------KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~---------~~~~~~~~~~nv~~~~~l~~~a~~----~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+|++||+||....... ..+....++.|+.++..+++++.. .+.++|++||...+.
T Consensus 80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 147 (281)
T 3zv4_A 80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------------ 147 (281)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc------------
Confidence 9999999996532111 112456788999999999888753 345899999987752
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCCccH----HH--HHHHHHHcCCCeEEec
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRV----VS--NFIAQALRGEPLTVQK 233 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...+.+.+.++.+.+ +++..++||.+..+......... .. ..........+
T Consensus 148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 218 (281)
T 3zv4_A 148 ----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLP----- 218 (281)
T ss_dssp ----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCT-----
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCC-----
Confidence 333446799999999999999988754 89999999999887432110000 00 01111222111
Q ss_pred CCceeEeeeehHHHHHHHHHHHh-cCC----CcceEecCCCc
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLME-GEN----TGPVNIGNPGE 270 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~-~~~----~~~~~~~~~~~ 270 (343)
...+..++|+|++++.++. ... +..+++.+|..
T Consensus 219 ----~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 219 ----IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG 256 (281)
T ss_dssp ----TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred ----CCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence 1236788999999999997 332 44777777643
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=145.52 Aligned_cols=211 Identities=14% Similarity=0.080 Sum_probs=139.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCc---------ccCCCCEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEP---------LLIEVDQIY 99 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~---------~~~~~d~vi 99 (343)
|++|||||+|+||.++++.|.++| ++|++++|+..... ....+.. ..++..+ |..+- ...++|+||
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv 77 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKD-ELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLV 77 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHH-HHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEE
Confidence 679999999999999999999999 99999988543211 1111100 1123332 33221 123799999
Q ss_pred EecCCC-Cccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPA-SPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 100 ~~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
|+||.. .... ..++....++.|+.++..+++++. +.+. ++|++||...+. +..+
T Consensus 78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~ 141 (254)
T 1zmt_A 78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKE 141 (254)
T ss_dssp EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTT
T ss_pred ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc----------------CCCC
Confidence 999965 2111 223446778999999999888774 4444 999999987763 2233
Q ss_pred CCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC-ccHH---HHHHHHHHcCCCeEEecCCceeEeee
Q 019309 170 RSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD-GRVV---SNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
...|+.+|...+.+.+.++.+. |+++.+++|+.++|+...... +.+. ...........+ ...+.
T Consensus 142 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p---------~~~~~ 212 (254)
T 1zmt_A 142 LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA---------LQRLG 212 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS---------SSSCB
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC---------CCCCc
Confidence 4679999999999999888764 899999999999887532111 1110 011111111110 11367
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
+++|+|++++.++.... +..+++.++.
T Consensus 213 ~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 213 TQKELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp CHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred CHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 89999999999998654 3466776654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-18 Score=140.79 Aligned_cols=203 Identities=15% Similarity=0.164 Sum_probs=145.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh-cCCCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW-IGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
|+|+||||||++-||+++++.|.++| ++|++++|+.. .+.+. .+..++..+.+|++|+. +.+
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEK----RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHH----HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999999 99999998532 22221 12357889999999873 337
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
+|++||+||...... ..++.+..+++|+.++..+.+++. +.+.++|.+||...+. +
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~ 139 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------S 139 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------C
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------C
Confidence 999999998654322 234556788999999988877664 4455999999987652 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
......|+.+|.....+.+.++.+. ++++-.+.||++-.+... . +.......-++. -+..+
T Consensus 140 ~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~----~----~~~~~~~~~Pl~---------R~g~p 202 (247)
T 3ged_A 140 EPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ----E----FTQEDCAAIPAG---------KVGTP 202 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-----------CCHHHHHTSTTS---------SCBCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH----H----HHHHHHhcCCCC---------CCcCH
Confidence 3334679999999999998888765 689999999988665421 1 112222221111 24678
Q ss_pred HHHHHHHHHHHhcCC--CcceEecCC
Q 019309 245 SDMVDGLIRLMEGEN--TGPVNIGNP 268 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~--~~~~~~~~~ 268 (343)
+|+|++++.++...- +..+.+.+|
T Consensus 203 ediA~~v~fL~s~~~iTG~~i~VDGG 228 (247)
T 3ged_A 203 KDISNMVLFLCQQDFITGETIIVDGG 228 (247)
T ss_dssp HHHHHHHHHHHHCSSCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCCCCCCCeEEECcC
Confidence 999999999997533 446666665
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=137.47 Aligned_cols=208 Identities=16% Similarity=0.117 Sum_probs=148.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi 99 (343)
.||++|||||++-||.++++.|.++| .+|++++|+.+.... ....++..+.+|++|+. +.++|++|
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDADGVHA-----PRHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTSTTS-----CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHhh-----hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 69999999999999999999999999 999999986433221 12357889999999873 44799999
Q ss_pred EecCCCCccc--cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCch
Q 019309 100 HLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCY 173 (343)
Q Consensus 100 ~~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y 173 (343)
||||...+.. ..++++..+++|+.++..+.+++. +.+.++|.+||...+. +......|
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~Y 147 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPAY 147 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHHH
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHHH
Confidence 9999654321 223556788999999888877664 3345999999987652 33334679
Q ss_pred HHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHH
Q 019309 174 DEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 174 ~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
+.+|.....+.+.++.++ |+++-.+.||.+-.|........ ....+.+...-++. -+-.++|+|.+
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~--~~~~~~~~~~~Plg---------R~g~peeiA~~ 216 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKAD--VEATRRIMQRTPLA---------RWGEAPEVASA 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCC--HHHHHHHHHTCTTC---------SCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCC--HHHHHHHHhcCCCC---------CCcCHHHHHHH
Confidence 999999999998888764 79999999999987742211110 12233333332222 24567999999
Q ss_pred HHHHHhcCC----CcceEecCC
Q 019309 251 LIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 251 i~~~~~~~~----~~~~~~~~~ 268 (343)
++.++.... +..+.+.+|
T Consensus 217 v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 217 AAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHhCchhcCccCceEEECcc
Confidence 999996543 345666554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-18 Score=149.59 Aligned_cols=205 Identities=14% Similarity=0.047 Sum_probs=145.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc------chhhhc--CCCceEEEEcccCCccc------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD------NLKKWI--GHPRFELIRHDVTEPLL------ 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------~~~~~~--~~~~~~~~~~d~~~~~~------ 92 (343)
..+|+||||||+|.||.++++.|.++| ++|++++|....... .....+ ...++.++.+|+.|+..
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 367899999999999999999999999 999999996543221 111111 12468889999998732
Q ss_pred ------CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCC
Q 019309 93 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 93 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
.++|+||||||...... ..++....+++|+.++..+++++. +.+. +||++||...+..
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~------- 194 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP------- 194 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC-------
Confidence 37999999999654222 223446788999999999999884 3444 9999999876531
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+..+...|+.+|...+.+.+.++.+. ++++..+.|+.+.... +... ..+. .
T Consensus 195 -------~~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-----------~~~~-~~~~-~------ 248 (346)
T 3kvo_A 195 -------VWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-----------AMDM-LGGP-G------ 248 (346)
T ss_dssp -------GGTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-----------HHHH-HCC---------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-----------HHHh-hccc-c------
Confidence 013345679999999999999988775 7999999998644321 1121 1111 1
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC--CcceEec
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIG 266 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~ 266 (343)
....+..++|+|++++.++.... .|.+.+.
T Consensus 249 -~~~r~~~pedvA~~v~~L~s~~~~itG~~ivd 280 (346)
T 3kvo_A 249 -IESQCRKVDIIADAAYSIFQKPKSFTGNFVID 280 (346)
T ss_dssp -CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred -ccccCCCHHHHHHHHHHHHhcCCCCCceEEEC
Confidence 11235688999999999998732 5555443
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=146.87 Aligned_cols=194 Identities=20% Similarity=0.129 Sum_probs=138.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEccc--CCcc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDV--TEPL----------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~--~~~~----------- 91 (343)
+.+|+++||||+|+||.++++.|.++| ++|++++|+.....+..... .....+.++.+|+ .+..
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999 99999998532221111111 1124667777777 5542
Q ss_pred -cCCCCEEEEecCCCCccc-----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
..++|+|||+||...... ..++....++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK----------- 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence 237999999999653211 23455678899999999999988 44455 899999987653
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHHh----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
+..+...|+.+|...+.+.+.++.+. ++++..++||.+..+. ........
T Consensus 160 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~------------~~~~~~~~--------- 213 (247)
T 3i1j_A 160 -----GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM------------RAQAYPDE--------- 213 (247)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH------------HHHHSTTS---------
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc------------chhccccc---------
Confidence 33344679999999999999988764 6889999998776531 11111111
Q ss_pred eeEeeeehHHHHHHHHHHHhcC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
....+..++|+|++++.++...
T Consensus 214 ~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 214 NPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp CGGGSCCGGGGTHHHHHHHSGG
T ss_pred CccCCCCHHHHHHHHHHHhCch
Confidence 1123567899999999999754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=144.83 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=139.6
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc---chhh---hc--CCCceEEEEcccCCccc-----
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD---NLKK---WI--GHPRFELIRHDVTEPLL----- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~---~~--~~~~~~~~~~d~~~~~~----- 92 (343)
.+.+|++|||||+|.||.++++.|.++| ++|++++|+...... .+.. .+ ...++.++.+|+.|+..
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 4578999999999999999999999999 999999996543211 1111 11 13468899999998732
Q ss_pred -------CCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCC
Q 019309 93 -------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 93 -------~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~ 156 (343)
.++|++|||||....... .++....+++|+.++..+.+++.. .+. ++|++||...+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 156 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA----- 156 (274)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-----
T ss_pred HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-----
Confidence 369999999996543222 234456788999999999888753 344 89999998765210
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++||.+.... +. ......
T Consensus 157 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~-------~~-----~~~~~~------ 209 (274)
T 3e03_A 157 ---------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD-------AI-----NMLPGV------ 209 (274)
T ss_dssp ---------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CC------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc-------hh-----hhcccc------
Confidence 02234569999999999999888764 7999999998544322 00 001111
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
....+..++|+|++++.++....
T Consensus 210 ---~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 210 ---DAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp ---CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred ---cccccCCHHHHHHHHHHHhCccc
Confidence 11226789999999999998654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=148.30 Aligned_cols=212 Identities=15% Similarity=0.032 Sum_probs=142.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCc-cc-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEP-LL----------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~-~~----------- 92 (343)
..+++||||||+|+||.++++.|+++| ++|++++|+.....+....+.. ..++.++.+|+.+. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 9999999864332222222222 24689999999987 31
Q ss_pred -CCCCEEEEecCCCCcc----------------------------------ccccChHHHHHHHHHHHHHHHHHHH----
Q 019309 93 -IEVDQIYHLACPASPI----------------------------------FYKYNPVKTIKTNVIGTLNMLGLAK---- 133 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~----------------------------------~~~~~~~~~~~~nv~~~~~l~~~a~---- 133 (343)
.++|+||||||..... ...+.....+++|+.++..+++++.
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 3699999999976321 0122335668999999888888774
Q ss_pred HcCC-eEEEEeCCcccCCCCCCC-----------C----------------CCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 134 RVGA-RILLTSTSEVYGDPLIHP-----------Q----------------PETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 134 ~~~~-r~i~~SS~~v~~~~~~~~-----------~----------------~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
+.+. ++|++||...+....... . .+..........+...|+.+|...+.+.+
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~ 248 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHH
Confidence 3344 999999987653210000 0 00000000112234679999999999999
Q ss_pred HHHHHh-CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc
Q 019309 186 DYHRQH-GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG 261 (343)
Q Consensus 186 ~~~~~~-~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~ 261 (343)
.++.+. ++++..++||+|.++.... ......++.++.++.++..+. ++
T Consensus 249 ~la~e~~~i~v~~v~PG~v~T~~~~~----------------------------~~~~~~~~~a~~~~~~~~~~~~~~~g 300 (311)
T 3o26_A 249 VLANKIPKFQVNCVCPGLVKTEMNYG----------------------------IGNYTAEEGAEHVVRIALFPDDGPSG 300 (311)
T ss_dssp HHHHHCTTSEEEEECCCSBCSGGGTT----------------------------CCSBCHHHHHHHHHHHHTCCSSCCCS
T ss_pred HHHhhcCCceEEEecCCceecCCcCC----------------------------CCCCCHHHHHHHHHHHHhCCCCCCCc
Confidence 999885 5899999999887653110 012467889999998887554 55
Q ss_pred ceEecC
Q 019309 262 PVNIGN 267 (343)
Q Consensus 262 ~~~~~~ 267 (343)
.|+.++
T Consensus 301 ~~~~~s 306 (311)
T 3o26_A 301 FFYDCS 306 (311)
T ss_dssp CEETC-
T ss_pred eEeccc
Confidence 666655
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=139.92 Aligned_cols=214 Identities=12% Similarity=0.026 Sum_probs=148.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
.++|+++||||++-||+++++.|.++| .+|++++|+.+...+....+. ...++.++.+|++++. +.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999 999999985432222222211 1246888999999873 23
Q ss_pred CCCEEEEecCCCCcc-----ccccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
++|++||+||..... ...++++..+++|+.++..+.+++. +.+. ++|.+||...+.
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~-------------- 149 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR-------------- 149 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------------
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC--------------
Confidence 799999999954321 1234566788999999888777664 4455 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCC--ccH-HHHHHHHHHcCCCeEEecCCce
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDD--GRV-VSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|.....+.+.++.+. |+++-.+.||.|-.+...... ... ...+.... .+..
T Consensus 150 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~---~~~~------- 217 (254)
T 4fn4_A 150 --GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLM---SLSS------- 217 (254)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHH---TTCC-------
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcC---CCCC-------
Confidence 23334679999999999888888764 799999999999776422111 111 11111111 0110
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
-+-.++|+|.+++.++.... +..+.+.+|-
T Consensus 218 --R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 218 --RLAEPEDIANVIVFLASDEASFVNGDAVVVDGGL 251 (254)
T ss_dssp --CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCc
Confidence 14567999999999997543 4466666653
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-18 Score=141.71 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=136.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-e--cCCCCCccchhhhcCCCceEEEEcccCCc---------ccCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-D--NYFTGSKDNLKKWIGHPRFELIRHDVTEP---------LLIEVD 96 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~d 96 (343)
+|++|||||+|+||+++++.|.++| ++|+++ . |+.... +.+...+ .+.++. |..+- ...++|
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~r~~~~~-~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~g~iD 74 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAER-QRFESEN--PGTIAL--AEQKPERLVDATLQHGEAID 74 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHHHH-HHHHHHS--TTEEEC--CCCCGGGHHHHHGGGSSCEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCcCCHHHH-HHHHHHh--CCCccc--CHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999999999 999998 5 743211 1111112 123332 22211 123699
Q ss_pred EEEEecCCCCc---cc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASP---IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 97 ~vi~~a~~~~~---~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|||+||.... .. ...+....++.|+.++..+++++. +.+. ++|++||...+.
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 139 (244)
T 1zmo_A 75 TIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK--------------- 139 (244)
T ss_dssp EEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred EEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC---------------
Confidence 99999996543 11 223456688999999999888775 4555 899999988763
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH-HHHHHHHHc-CCCeEEecCCceeE
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV-SNFIAQALR-GEPLTVQKPGTQTR 239 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~ 239 (343)
+..+...|+.+|...+.+.+.++.+. |+++..++|+.+..+..... .... ......... ..+ ..
T Consensus 140 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~p---------~~ 208 (244)
T 1zmo_A 140 -PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPT-SDWENNPELRERVDRDVP---------LG 208 (244)
T ss_dssp -CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCH-HHHHHCHHHHHHHHHHCT---------TC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-ccccchHHHHHHHhcCCC---------CC
Confidence 22334679999999999999887763 79999999999877642000 0000 011111111 111 01
Q ss_pred eeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 240 SFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.+..++|+|++++.++.... .| .+.+.++
T Consensus 209 r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 209 RLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp SCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 26788999999999998654 34 5555554
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=147.48 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=138.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh---cCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCccc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~-------- 92 (343)
+.+|++|||||+|+||.++++.|.+ +| ++|++++|+.....+....+. ...++.++.+|++++..
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999 89 999999985322111111111 12468899999998621
Q ss_pred ------CCCC--EEEEecCCCCc--c-----ccccChHHHHHHHHHHHHHHHHHHHHc------CC-eEEEEeCCcccCC
Q 019309 93 ------IEVD--QIYHLACPASP--I-----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYGD 150 (343)
Q Consensus 93 ------~~~d--~vi~~a~~~~~--~-----~~~~~~~~~~~~nv~~~~~l~~~a~~~------~~-r~i~~SS~~v~~~ 150 (343)
.++| +|||+||.... . ....+....++.|+.++..+++++... +. ++|++||...+.
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~- 161 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ- 161 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS-
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC-
Confidence 1468 99999996532 1 123455678899999999999988642 23 799999998763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhC-CceEEEEeccccCCCCCCCCccHHHHHH---------
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG-IQIRIARIFNTYGPRMNIDDGRVVSNFI--------- 220 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~-~~~~i~R~~~v~G~~~~~~~~~~~~~~~--------- 220 (343)
+..+...|+.+|...+.+.+.++.+.+ +++..++||.+-.+. ...+.
T Consensus 162 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~--------~~~~~~~~~~~~~~ 218 (259)
T 1oaa_A 162 ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM--------QQLARETSKDPELR 218 (259)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH--------HHHHHHHCSCHHHH
T ss_pred ---------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch--------HHHHhhccCChhHH
Confidence 333446799999999999999988763 788888888775432 11111
Q ss_pred HHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 221 AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
...... . ....+.+++|+|++++.++..
T Consensus 219 ~~~~~~--~-------p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 219 SKLQKL--K-------SDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHH--H-------HTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHh--h-------hcCCcCCHHHHHHHHHHHHhh
Confidence 000000 0 012367899999999999975
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=153.60 Aligned_cols=167 Identities=12% Similarity=0.100 Sum_probs=118.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-------eEEEEecCCC-CCccc-hhhhcCCCceEEEEcccCC-----cccC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVADNYFT-GSKDN-LKKWIGHPRFELIRHDVTE-----PLLI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~-~~~~~-~~~~~~~~~~~~~~~d~~~-----~~~~ 93 (343)
+.|||+||||+||||++++..|+++| + +|+++++... ..... ..++.. ..+.+. +|+.+ ..+.
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g-~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~-~~~~~~-~di~~~~~~~~a~~ 79 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGE-MLGKDQPVILQLLEIPQAMKALEGVVMELED-CAFPLL-AGLEATDDPKVAFK 79 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-TTCTTE-EEEEEESCHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CCCCCCCCEEEEEeCCCchhhccchhhhhhc-cccccc-CCeEeccChHHHhC
Confidence 45899999999999999999999988 5 8999887421 00011 111111 111111 23322 3466
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeCCcc-cCCCCCCCCCCCCCCCCC-CCC
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEV-YGDPLIHPQPETYWGNVN-PIG 168 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS~~v-~~~~~~~~~~e~~~~~~~-~~~ 168 (343)
++|+|||+||.... ...++.++++.|+.++.++++++++++ . +++++|+..- .. +..++. . ...
T Consensus 80 ~~D~Vih~Ag~~~~--~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~----~~~~~ 148 (327)
T 1y7t_A 80 DADYALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKN----APGLN 148 (327)
T ss_dssp TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHT----CTTSC
T ss_pred CCCEEEECCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHH----cCCCC
Confidence 89999999996542 245678899999999999999999985 4 7887776531 10 011110 1 244
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCC
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRM 208 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~ 208 (343)
|..+|+.+|+..|++...+++..|++.+++|+++|||++.
T Consensus 149 p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 149 PRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred hhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 5567999999999999999888899999999999999874
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=131.85 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=148.7
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc-------CCCC
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL-------IEVD 96 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~-------~~~d 96 (343)
+...+|+++||||++-||.++++.|.++| .+|++.+|+... +...... ...++..+.+|+.|+.. .++|
T Consensus 5 f~L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~--~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 5 FSLEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAPD--ETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred cCCCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcHH--HHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 34579999999999999999999999999 999999985421 1111111 23468889999998743 2599
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
++|||||...... ..++++..+++|+.++..+.+++. +.+ . ++|.+||...+. +
T Consensus 82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g 145 (247)
T 4hp8_A 82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------G 145 (247)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------C
T ss_pred EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------C
Confidence 9999999654322 234567788999999988887653 333 3 999999987652 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCceeEee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
......|+.+|.....+.+.++.+. |+++-.+.||.+-.+... ... ....+.+...-++. -+
T Consensus 146 ~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~----~~~~~~~~~~~~~~~~Plg---------R~ 212 (247)
T 4hp8_A 146 GIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTE----ALRADAARNKAILERIPAG---------RW 212 (247)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHTSHHHHHHHHTTCTTS---------SC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchh----hcccCHHHHHHHHhCCCCC---------CC
Confidence 2334579999999999988888664 799999999998766421 011 11222233322221 24
Q ss_pred eehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 242 CYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
-.++|+|.+++.++.... .| .+.+.+|
T Consensus 213 g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 213 GHSEDIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp BCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 567999999999987544 34 5666554
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=139.65 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=144.1
Q ss_pred CCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~ 93 (343)
.+|+++|||| +|+||+++++.|.++| ++|++++|+.....+.+...+. .++.++.+|+.++. +.
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHHHHHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHhcC-CCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5789999999 9999999999999999 9999999853221122222222 35788999999863 12
Q ss_pred ---CCCEEEEecCCCCc------c---ccccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCC
Q 019309 94 ---EVDQIYHLACPASP------I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 94 ---~~d~vi~~a~~~~~------~---~~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e 158 (343)
++|++|||||.... . ...++....++.|+.++..+++++... +.++|++||...++
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------- 154 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---------
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc---------
Confidence 79999999996541 1 122344567899999999999999754 23899999976532
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC----CccHH----HHHHHHHHcCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID----DGRVV----SNFIAQALRGE 227 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~----~~~~~----~~~~~~~~~~~ 227 (343)
......|+.+|...+.+.+.++.+. |+++..++||.+..+..... ..... ..+........
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 226 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccC
Confidence 1223569999999999998888764 89999999998866421000 00000 00111111111
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
++ . +.+..++|+|++++.++.... .| .+.+.++
T Consensus 227 p~-------~-rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 227 PI-------G-WNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263 (269)
T ss_dssp TT-------C-CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred Cc-------c-cCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence 11 0 025677999999999997543 44 5666655
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=147.94 Aligned_cols=216 Identities=14% Similarity=0.132 Sum_probs=147.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCc--cchhhhc--CCCceEEEEcccCCccc--------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSK--DNLKKWI--GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~--~~~~~~~--~~~~~~~~~~d~~~~~~-------- 92 (343)
...+++||||||+|+||.++++.|.++| + +|+++.|+..... ..+...+ ...++.++.+|+.|...
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G-~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRG-APHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHT-CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999 6 5899988643211 1111111 12468899999998631
Q ss_pred ---CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
..+|+|||+||...... ...+....++.|+.++.++.+++.+.+. +||++||...+..
T Consensus 302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g-------------- 367 (486)
T 2fr1_A 302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG-------------- 367 (486)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC--------------
T ss_pred HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC--------------
Confidence 24699999999764321 2234456778999999999999998887 8999999765421
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
......|+.+|...+.+...+.. .|+++++++|+.+.+++.. ..... .... ...+.+++.
T Consensus 368 --~~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~-------~~~~~--------~~~~--~~g~~~i~~ 427 (486)
T 2fr1_A 368 --APGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA-------EGPVA--------DRFR--RHGVIEMPP 427 (486)
T ss_dssp --CTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC---------------------------CT--TTTEECBCH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCccc-------chhHH--------HHHH--hcCCCCCCH
Confidence 12235699999999998877654 5999999999998876411 00000 0000 112457999
Q ss_pred HHHHHHHHHHHhcCCCcceEecCCCccCHHHHHHHH
Q 019309 245 SDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETV 280 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i 280 (343)
+|+++++..++........ +. .+.|..+...+
T Consensus 428 e~~a~~l~~~l~~~~~~~~-v~---~~d~~~~~~~~ 459 (486)
T 2fr1_A 428 ETACRALQNALDRAEVCPI-VI---DVRWDRFLLAY 459 (486)
T ss_dssp HHHHHHHHHHHHTTCSSCE-EC---EECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEE-EE---eCCHHHHhhhh
Confidence 9999999999987654332 22 24566665543
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=137.59 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=140.4
Q ss_pred cCCCEEEEEcCc--hhHHHHHHHHHHhcCCCeEEEEecCC----------CCCccchhhhcCCCc----eEEEEcc----
Q 019309 27 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVADNYF----------TGSKDNLKKWIGHPR----FELIRHD---- 86 (343)
Q Consensus 27 ~~~~~ilItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~~~~~----~~~~~~d---- 86 (343)
+.+|++|||||+ |+||.++++.|.++| ++|++++|.. ....+....+ .... .....+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVL-PDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBC-TTSSBCCEEEEEEECTTCC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhhhhhh-ccccccccccccccceecc
Confidence 467899999999 999999999999999 9999987531 0111111111 1111 2333332
Q ss_pred ----cC----C--------cc------------cCCCCEEEEecCCCC---c---cccccChHHHHHHHHHHHHHHHHHH
Q 019309 87 ----VT----E--------PL------------LIEVDQIYHLACPAS---P---IFYKYNPVKTIKTNVIGTLNMLGLA 132 (343)
Q Consensus 87 ----~~----~--------~~------------~~~~d~vi~~a~~~~---~---~~~~~~~~~~~~~nv~~~~~l~~~a 132 (343)
+. | +. ..++|++|||||... . .....+....++.|+.++..+++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 21 1 11 126999999998532 1 1123345678899999999999999
Q ss_pred HHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHhHHHHHHHHHHHHHH----hCCceEEEEecccc
Q 019309 133 KRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTY 204 (343)
Q Consensus 133 ~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~ 204 (343)
... +.++|++||...+.. .... ..|+.+|...+.+.+.++.+ +|+++..++|+++.
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~ 227 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERI----------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG 227 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred HHHhccCceEEEEeccccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccc
Confidence 764 248999999876531 1122 46999999999998887755 58999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
++..... .....+........+. ..+.+++|+|++++.++.... +..+++.++.
T Consensus 228 T~~~~~~--~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 228 SRAAKAI--GFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CCCSSCC--SHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred cchhhhc--cccHHHHHHhhccCCC---------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 9864321 1222333322222111 125688999999999987532 3467777663
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=135.02 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=149.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh-cCCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW-IGHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~------------~~ 93 (343)
..+|++|||||++-||.++++.|.++| ..|++++|..+.. ...... ....++.++.+|++++. +.
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 82 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHAPDG-AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFG 82 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCCH-HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCcccH-HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999 9999999865432 111111 11357889999999873 33
Q ss_pred CCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
++|++||+||...... ..+++...++.|+.++..+.+++. +.+.++|.+||...+. +
T Consensus 83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~ 146 (258)
T 4gkb_A 83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT----------------G 146 (258)
T ss_dssp CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------C
T ss_pred CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------C
Confidence 7999999999653322 233456678999999888877664 3455999999987652 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
......|+.+|...+.+.+.++.+ +|+++-.+.||.|-.+....... ..............++ + .-+
T Consensus 147 ~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---g-----~R~ 218 (258)
T 4gkb_A 147 QGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---G-----RRF 218 (258)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---T-----TSC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---C-----CCC
Confidence 333467999999999999888865 47999999999998765211000 0001122222222111 0 125
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..++|+|.++++++.... +..+.+.+|.
T Consensus 219 g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 219 TTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 667999999999986543 4467776654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=137.79 Aligned_cols=212 Identities=17% Similarity=0.071 Sum_probs=147.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~ 93 (343)
..+|+++||||++-||+++++.|.++| .+|++.+|+.+...+....+. ...++..+.+|++++. +.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 479999999999999999999999999 999999885432222222221 1246888999999873 34
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----H-cCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----R-VGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~-~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
++|++|||||...... ..++++..+++|+.++..+.+++. + .+. ++|.+||...+.
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-------------- 151 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-------------- 151 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------------
Confidence 6999999999654322 234556788999999988877653 2 233 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCcee
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|.....+.+.++.+ +|+++-.+.||.+..+... ... ..+.......-++.
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~----~~~~~~~~~~~~~~~~Pl~-------- 217 (255)
T 4g81_D 152 --ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNT----ALIEDKQFDSWVKSSTPSQ-------- 217 (255)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGH----HHHTCHHHHHHHHHHSTTC--------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhh----cccCCHHHHHHHHhCCCCC--------
Confidence 2333467999999999998888866 4799999999998776421 000 11222222222221
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
-+..++|+|.+++.++.... +..+.+.+|
T Consensus 218 -R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 218 -RWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp -SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 24567999999999986543 346666654
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=145.39 Aligned_cols=161 Identities=20% Similarity=0.158 Sum_probs=120.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--------CCCceEEEEcccCCccc--------
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--------GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~-------- 92 (343)
+|+||||||+|+||.+++++|.++| ++|+++.|...... .....+ ...++.++.+|+++...
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G-~~v~~v~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLK-TQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGG-GTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CceEEEEeecCcHH-HHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 5789999999999999999999999 88888877432221 111111 12468899999998631
Q ss_pred --CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 --~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
..+|+||||||...... ..++....+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 80 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~------------ 147 (327)
T 1jtv_A 80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------ 147 (327)
T ss_dssp TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS------------
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc------------
Confidence 25999999998653221 22345678899999999999886 44555 999999987753
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
+......|+.+|...|.+.+.++.+ .|+++.+++|+.|.++.
T Consensus 148 ----~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 ----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 2223457999999999999988875 58999999999998765
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=142.09 Aligned_cols=200 Identities=15% Similarity=0.058 Sum_probs=135.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC-----CCccch---hhhcCCCceEEEEcccCCcc-------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT-----GSKDNL---KKWIGHPRFELIRHDVTEPL------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~~~~~---~~~~~~~~~~~~~~d~~~~~------- 91 (343)
+.+|+++||||+|+||.++++.|.++| ++|++.+|... ...+.. ...+...... ..+|+.+..
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~-~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK-AVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE-EEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe-EEEeCCCHHHHHHHHH
Confidence 467999999999999999999999999 99999865311 011111 1111111111 246777653
Q ss_pred -----cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcc-cCCCCCCCC
Q 019309 92 -----LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV-YGDPLIHPQ 156 (343)
Q Consensus 92 -----~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v-~~~~~~~~~ 156 (343)
..++|+|||+||...... ...+....+++|+.++..+++++ ++.+. +||++||... ++.
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~------ 158 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN------ 158 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC------
Confidence 236999999999654321 23345678899999998888877 44555 9999999754 431
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
.+...|+.+|...+.+.+.++.+ .|+++..++|+.+ .+... ....
T Consensus 159 -----------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~----~~~~---------------- 206 (319)
T 1gz6_A 159 -----------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE----TVMP---------------- 206 (319)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG----GGSC----------------
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc----ccCC----------------
Confidence 12457999999999999988876 4899999999987 32210 0000
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC--Cc-ceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN--TG-PVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~--~~-~~~~~~~ 268 (343)
.....+++++|+|.+++.++..+. .| .|++.++
T Consensus 207 --~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 207 --EDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp --HHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred --hhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 011124678999999999987643 33 5666655
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=148.39 Aligned_cols=210 Identities=13% Similarity=-0.010 Sum_probs=145.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc------------CC-
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------IE- 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~- 94 (343)
.++++|||||+|.||.++++.|.++| ++|++++|.. ..+.+.......++.++.+|++|... .+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G-a~Vvl~~r~~--~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~ 288 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG-ATVVAIDVDG--AAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGK 288 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECGG--GHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC-CEEEEEeCCc--cHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999 8999998742 12222222222356789999998732 23
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|+|||+||...... ..++....++.|+.++.++.+++... +. +||++||...+.
T Consensus 289 id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~---------------- 352 (454)
T 3u0b_A 289 VDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA---------------- 352 (454)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH----------------
T ss_pred ceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC----------------
Confidence 999999999764322 23345577899999999999999865 44 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
.......|+.+|...+.+.+.++.+ .|+++..+.||.+.++..... ........... . ....+.
T Consensus 353 g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-----~~~~~~~~~~~-~-------~l~r~g 419 (454)
T 3u0b_A 353 GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI-----PLATREVGRRL-N-------SLFQGG 419 (454)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---------------CHHHHHS-B-------TTSSCB
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc-----chhhHHHHHhh-c-------cccCCC
Confidence 2233467999999888888877755 489999999999987642110 00000000000 0 011245
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..+|+|+++..++.... +..+++.++.
T Consensus 420 ~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 420 QPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp CHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred CHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 78999999999987543 4467776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=137.16 Aligned_cols=213 Identities=14% Similarity=0.088 Sum_probs=148.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+|.+|||||++-||.++++.|.++| .+|++++|+.+.-.+...++ ..++..+.+|+.|+. +.++
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999999999999999999 99999998543222222222 246788999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|++||+||...... ..++++..+++|+.++..+.+++... +.++|.+||...+. +..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------------~~~ 168 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------------GTP 168 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS----------------CCT
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc----------------CCC
Confidence 99999998654322 23456778899999999999988643 22799999987652 333
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC---CccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID---DGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
....|+.+|.....+.+.++.+. |+++-.+.||.+-.+..... .......+...+...-++. -+-
T Consensus 169 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg---------R~g 239 (273)
T 4fgs_A 169 AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG---------RVG 239 (273)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS---------SCB
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC---------CCc
Confidence 34679999999999999988765 68999999999877642111 0111122333333322221 145
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.++|+|.+++.++.... +..+.+.+|
T Consensus 240 ~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 240 RAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 67999999999997543 446666655
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=133.65 Aligned_cols=213 Identities=12% Similarity=0.026 Sum_probs=147.2
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcc----------
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~---------- 91 (343)
..+|+++||||+| -||.++++.|.++| ++|++.+|+..... .+.+. ....++.++.+|++++.
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERSRK-ELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGGHH-HHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4789999999887 89999999999999 99999998643222 22222 22347889999999863
Q ss_pred --cCCCCEEEEecCCCCcccc-----c---cChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIFY-----K---YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~~-----~---~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e 158 (343)
+.++|++||+||....... + ++....++.|+.++..+..++...- .++|++||.....
T Consensus 82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~--------- 152 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF--------- 152 (256)
T ss_dssp HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---------
T ss_pred HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence 2369999999986542211 1 1223456788888888777776432 2899999987642
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .......+.....-++.
T Consensus 153 -------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~--~~~~~~~~~~~~~~Pl~----- 218 (256)
T 4fs3_A 153 -------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV--GGFNTILKEIKERAPLK----- 218 (256)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC--TTHHHHHHHHHHHSTTS-----
T ss_pred -------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc--cCCHHHHHHHHhcCCCC-----
Confidence 3334467999999999998888876 479999999998877643211 11233344443332221
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
-+..++|+|+++++++.... +..+.+.+|
T Consensus 219 ----R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 219 ----RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp ----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 14567999999999996543 346666554
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-16 Score=131.24 Aligned_cols=208 Identities=15% Similarity=0.119 Sum_probs=140.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
..+|++|||||++-||.++++.|.++| ++|++.+|.... .. ....++.+|++++. +.+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~---~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELG-AQVLTTARARPE---GL------PEELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEESSCCT---TS------CTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEECCchh---CC------CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 367999999999999999999999999 999999985322 11 23346789999863 346
Q ss_pred CCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 95 ~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
+|++||+||..... ...+++...+++|+.++..+.+++ ++.+. ++|++||...+-.
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------------- 145 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------------- 145 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC-------------
Confidence 99999999854321 123455678899999988877765 34555 9999999875421
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC----------CCccHHHHHHHHHHcCCCeE
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI----------DDGRVVSNFIAQALRGEPLT 230 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~----------~~~~~~~~~~~~~~~~~~~~ 230 (343)
.......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.... .........+...... ++
T Consensus 146 --~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~P 221 (261)
T 4h15_A 146 --LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGG--IP 221 (261)
T ss_dssp --CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC--CT
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcC--CC
Confidence 1112356999999999998888876 47999999999886642100 0000001111111111 11
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+ .-+..++|+|++++.++.... .| .+.+.+|
T Consensus 222 l-------gR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 222 L-------GRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp T-------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C-------CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 1 125678999999999996543 34 6666655
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-17 Score=138.25 Aligned_cols=206 Identities=13% Similarity=-0.003 Sum_probs=132.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc-------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL-------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~-------------~ 92 (343)
+.+|++|||||+|+||.++++.|.++| ++|++++|+..........+. ...++.++.+|+.|+. .
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999 999999885322111111110 0246888999999862 3
Q ss_pred CCCCEEEEecC--CC-------Cc--cccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCC
Q 019309 93 IEVDQIYHLAC--PA-------SP--IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQ 156 (343)
Q Consensus 93 ~~~d~vi~~a~--~~-------~~--~~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~ 156 (343)
.++|++||+|| .. .. .....+....++.|+.++..+..++ .+.+. ++|++||...+..
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 155 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------ 155 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence 46899999994 21 11 1112234566778888776665555 34554 9999999877531
Q ss_pred CCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 019309 157 PETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 157 ~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
.+...|+.+|...+.+.+.++.+ .|+++.+++||.+.++.... ..... ............
T Consensus 156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~--~~~~~~~~~~~~ 218 (260)
T 2qq5_A 156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKE----HMAKE--EVLQDPVLKQFK 218 (260)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHH----hhccc--cccchhHHHHHH
Confidence 12357999999999999988865 48999999999998875211 00000 000000000000
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
. ....+..++|+|++++.++...
T Consensus 219 ~--~~~~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 219 S--AFSSAETTELSGKCVVALATDP 241 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCT
T ss_pred h--hhccCCCHHHHHHHHHHHhcCc
Confidence 0 0011357899999999999764
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-16 Score=143.91 Aligned_cols=217 Identities=16% Similarity=0.141 Sum_probs=149.7
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCc--cchhhhcC--CCceEEEEcccCCccc-------C
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSK--DNLKKWIG--HPRFELIRHDVTEPLL-------I 93 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~d~~~~~~-------~ 93 (343)
...+++||||||+|+||.++++.|.++| + .|+++.|+..... ..+...+. ..++.++.+|+.|... .
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G-~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEG-AERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT-CSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC-CcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 3467899999999999999999999999 6 6888888642211 11111111 2368899999998732 3
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeCCcc-cCCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEV-YGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~-~~-r~i~~SS~~v-~~~~~~~~~~e~~~~~~~~ 166 (343)
.+|+|||+||...... ...+....++.|+.++.++.+++... +. +||++||... +|.
T Consensus 335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~---------------- 398 (511)
T 2z5l_A 335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN---------------- 398 (511)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC----------------
T ss_pred CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC----------------
Confidence 5999999999765322 12334567789999999999998876 66 8999999854 331
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHH
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 246 (343)
.....|+.+|...|.+.+.+. ..|+++++++|+.+.+.+.. ....... +.. ..+.+++.+|
T Consensus 399 -~g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~---~~~~~~~---~~~-----------~g~~~l~~e~ 459 (511)
T 2z5l_A 399 -AGQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMA---AGAGEES---LSR-----------RGLRAMDPDA 459 (511)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCC---CCHHHHH---HHH-----------HTBCCBCHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccc---ccccHHH---HHh-----------cCCCCCCHHH
Confidence 223679999999999988764 45999999999987433211 1111111 111 1124688999
Q ss_pred HHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHH
Q 019309 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKE 282 (343)
Q Consensus 247 ~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~ 282 (343)
+++++..++..+....+ +. .+.|..+...+..
T Consensus 460 ~a~~l~~al~~~~~~v~-v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 460 AVDALLGAMGRNDVCVT-VV---DVDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHHHHTCSEEE-EC---CBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEE-EE---eCCHHHHHhhhcc
Confidence 99999999987654332 22 2456666665543
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-15 Score=129.60 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=135.3
Q ss_pred cCCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCCC----------CCccchhhhcCCC---ceEEEEcc-----
Q 019309 27 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYFT----------GSKDNLKKWIGHP---RFELIRHD----- 86 (343)
Q Consensus 27 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~----------~~~~~~~~~~~~~---~~~~~~~d----- 86 (343)
+.+|+++|||| +|.||.++++.|.++| ++|++++|... ...+......... .+.++.+|
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 46789999999 8999999999999999 99999876310 0001111110000 12344433
Q ss_pred -------cCC--------c------------ccCCCCEEEEecCCCC---cc---ccccChHHHHHHHHHHHHHHHHHHH
Q 019309 87 -------VTE--------P------------LLIEVDQIYHLACPAS---PI---FYKYNPVKTIKTNVIGTLNMLGLAK 133 (343)
Q Consensus 87 -------~~~--------~------------~~~~~d~vi~~a~~~~---~~---~~~~~~~~~~~~nv~~~~~l~~~a~ 133 (343)
+.+ + .+.++|++|||||... .. ....+....++.|+.++..+++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 222 1 1126999999998542 11 1223455778999999999999996
Q ss_pred Hc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccC
Q 019309 134 RV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYG 205 (343)
Q Consensus 134 ~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G 205 (343)
.. +.++|++||...+.. .... ..|+.+|...+.+.+.++.+ .|+++..++||.|..
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T 229 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERV----------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSC----------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHhcCCEEEEEeccccccc----------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence 54 248999999876531 1122 36999999999988887754 489999999998876
Q ss_pred CCCCC----CCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 206 PRMNI----DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 206 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+.... ....+...+........+. ..+..++|+|++++.++.... .| .+.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 291 (315)
T 2o2s_A 230 RAASAIGKSGEKSFIDYAIDYSYNNAPL---------RRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291 (315)
T ss_dssp HHHHHTTCSSSSCHHHHHHHHHHHHSSS---------CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhhhccccccchhHHHHHHHHhccCCC---------CCCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence 42100 0001111111111111111 125678999999999997532 44 5566555
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=135.88 Aligned_cols=199 Identities=14% Similarity=0.139 Sum_probs=139.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc--cchhhhcC--CCceEEEEcccCCccc-----------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK--DNLKKWIG--HPRFELIRHDVTEPLL----------- 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~d~~~~~~----------- 92 (343)
+++++|||||+|.||.++++.|.++|...|+++.|...... ..+...+. ..++.++.+|+.|...
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999999337888888532211 11211111 2468899999998621
Q ss_pred CCCCEEEEecCCC-Cccc----cccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPA-SPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 93 ~~~d~vi~~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
..+|+|||+||.. .... ...+....++.|+.++.++.+++...+. +||++||...+. .
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~----------------g 381 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW----------------G 381 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------T
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC----------------C
Confidence 2599999999976 2211 2234457789999999999999998887 899999977642 2
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHH
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 246 (343)
......|+.+|...+.+.+.+. ..|+++..+.||.+.+++.... ......+.+.+ +..+..++
T Consensus 382 ~~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~-----~~~~~~l~~~g-----------~~~l~pe~ 444 (496)
T 3mje_A 382 SGGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATD-----PEVHDRLVRQG-----------VLAMEPEH 444 (496)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-----------CHHHHHTT-----------EEEECHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccC-----hHHHHHHHhcC-----------CCCCCHHH
Confidence 2234679999999999888765 4599999999998877653211 01111111111 22457789
Q ss_pred HHHHHHHHHhcCC
Q 019309 247 MVDGLIRLMEGEN 259 (343)
Q Consensus 247 ~a~~i~~~~~~~~ 259 (343)
.++++..++....
T Consensus 445 ~~~~l~~~l~~~~ 457 (496)
T 3mje_A 445 ALGALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998755
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=131.28 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=120.2
Q ss_pred cCCCEEEEEcC--chhHHHHHHHHHHhcCCCeEEEEecCC----------CCCccc-----------hhhhcCCC-----
Q 019309 27 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVADNYF----------TGSKDN-----------LKKWIGHP----- 78 (343)
Q Consensus 27 ~~~~~ilItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~-----------~~~~~~~~----- 78 (343)
+.+|++||||| +|.||.++++.|.++| ++|++++|+. ....+. ....+...
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC--------------------------------C
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 45789999999 8999999999999999 9999987631 000000 00001000
Q ss_pred ceEEEEccc------------CC--------c------------ccCCCCEEEEecCCCC---cc---ccccChHHHHHH
Q 019309 79 RFELIRHDV------------TE--------P------------LLIEVDQIYHLACPAS---PI---FYKYNPVKTIKT 120 (343)
Q Consensus 79 ~~~~~~~d~------------~~--------~------------~~~~~d~vi~~a~~~~---~~---~~~~~~~~~~~~ 120 (343)
...++.+|+ .+ . .+.++|++|||||... .. ....+....+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 024444432 22 1 1126999999998542 11 122345577899
Q ss_pred HHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC-CchHHhHHHHHHHHHHHHHH----hC
Q 019309 121 NVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HG 192 (343)
Q Consensus 121 nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~ 192 (343)
|+.++..+++++... +.++|++||...+. +.... ..|+.+|...+.+.+.++.+ +|
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~g 229 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEK----------------VIPGYGGGMSSAKAALESDCRTLAFEAGRARA 229 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEecccccc----------------ccCccchhhHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999764 34899999987642 11122 46999999999988887754 58
Q ss_pred CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 193 ~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+++..++||.|..+............+...... ..........+..++|+|++++.++.... .| .+.+.++
T Consensus 230 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 304 (319)
T 2ptg_A 230 VRVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNG 304 (319)
T ss_dssp CEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred eeEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 999999999987764211000000000000000 00000011235688999999999997532 44 5666665
Q ss_pred Cc
Q 019309 269 GE 270 (343)
Q Consensus 269 ~~ 270 (343)
..
T Consensus 305 ~~ 306 (319)
T 2ptg_A 305 LH 306 (319)
T ss_dssp CT
T ss_pred ce
Confidence 43
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=140.99 Aligned_cols=202 Identities=14% Similarity=-0.018 Sum_probs=127.7
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--------CCccchhhhcCCCceEEEEcccCCcc-----
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--------GSKDNLKKWIGHPRFELIRHDVTEPL----- 91 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~d~~~~~----- 91 (343)
..+.+|+++||||+|.||.++++.|.++| ++|++++|... ...+.....+...... ..+|+.+..
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHH
Confidence 34578999999999999999999999999 99999887211 1111111111111111 235666542
Q ss_pred -------cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCC
Q 019309 92 -------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 92 -------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~ 155 (343)
+.++|++|||||...... ..++....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~------ 166 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY------ 166 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH------
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC------
Confidence 226999999999764322 23455678899999999999888 45555 999999976542
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQ 232 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
+......|+.+|...+.+.+.++.+. |+++..+.|+.+-... .+. .
T Consensus 167 ----------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~~-----------------~~~-~--- 215 (613)
T 3oml_A 167 ----------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRMT-----------------EGI-L--- 215 (613)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------CCC-C---
T ss_pred ----------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChhh-----------------hhc-c---
Confidence 22234679999999999999888764 7999999997532111 000 0
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhcCC---CcceEecC
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGN 267 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~ 267 (343)
.......+.++|+|.+++.++.... +..+++.+
T Consensus 216 --~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdG 251 (613)
T 3oml_A 216 --PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAA 251 (613)
T ss_dssp --CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred --chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECC
Confidence 0011223578999999999987543 33445444
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-14 Score=122.92 Aligned_cols=162 Identities=8% Similarity=-0.028 Sum_probs=113.9
Q ss_pred CCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCC---------CCCccchhh----hcCCCceEEEEcccCCc--
Q 019309 28 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYF---------TGSKDNLKK----WIGHPRFELIRHDVTEP-- 90 (343)
Q Consensus 28 ~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~~~~~~~----~~~~~~~~~~~~d~~~~-- 90 (343)
.+|+++||||++ .||.++++.|.++| ++|++..|.. ......... ......+.++.+|+.+.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 79 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccch
Confidence 368999999875 99999999999999 9999776532 000000000 00123467888888765
Q ss_pred c------------------c------------CCCCEEEEecCCCC---ccc---cccChHHHHHHHHHHHHHHHHHHHH
Q 019309 91 L------------------L------------IEVDQIYHLACPAS---PIF---YKYNPVKTIKTNVIGTLNMLGLAKR 134 (343)
Q Consensus 91 ~------------------~------------~~~d~vi~~a~~~~---~~~---~~~~~~~~~~~nv~~~~~l~~~a~~ 134 (343)
. . ..+|++||+||... ... ...+....+++|+.++..+..++..
T Consensus 80 ~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p 159 (329)
T 3lt0_A 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 1 25999999998531 111 2234567889999999999998865
Q ss_pred c---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC-chHHhHHHHHHHHHHHHHH----hCCceEEEEeccccCC
Q 019309 135 V---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS-CYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYGP 206 (343)
Q Consensus 135 ~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G~ 206 (343)
. +.++|++||...+. +..... .|+.+|...+.+.+.++.+ .|+++..+.||.|..+
T Consensus 160 ~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 160 IMKPQSSIISLTYHASQK----------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp GEEEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHhhCCeEEEEeCccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 4 13899999987652 222233 6999999999888777654 5899999999988765
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=131.95 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=145.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEE-ecCCCC------------CccchhhhcC--CCceEEEEcccCC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVA-DNYFTG------------SKDNLKKWIG--HPRFELIRHDVTE 89 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~-~r~~~~------------~~~~~~~~~~--~~~~~~~~~d~~~ 89 (343)
...++++|||||+|.||.++++.|.++| .. |+++ .|+... ..+.+...+. ..++.++.+|++|
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G-~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDG-AGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHT-CCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcC-CCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 3567899999999999999999999999 65 6666 775321 1111111111 2468899999998
Q ss_pred cc-----------cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcC-----C-eEEEEeCCccc
Q 019309 90 PL-----------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVY 148 (343)
Q Consensus 90 ~~-----------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~-----~-r~i~~SS~~v~ 148 (343)
.. ...+|+|||+||...... ...+....++.|+.++.++.+++.... . +||++||...+
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~ 406 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI 406 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence 62 135899999999764322 223445678999999999999998765 5 89999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC
Q 019309 149 GDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEP 228 (343)
Q Consensus 149 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
. .......|+.+|...+.+...+. ..|+++..+.||.+ +.+... ...... .+...+
T Consensus 407 ~----------------g~~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm~~--~~~~~~---~~~~~g- 462 (525)
T 3qp9_A 407 W----------------GGAGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSRVT--EGATGE---RLRRLG- 462 (525)
T ss_dssp T----------------CCTTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSGGG--SSHHHH---HHHHTT-
T ss_pred C----------------CCCCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-cccccc--chhhHH---HHHhcC-
Confidence 2 22234679999999998876654 34899999999988 322110 111111 111111
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHH
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVK 281 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~ 281 (343)
...+..+++++++..++..+....... .+.|..+...+.
T Consensus 463 ----------~~~l~pee~a~~l~~~l~~~~~~v~v~----~~dw~~~~~~~~ 501 (525)
T 3qp9_A 463 ----------LRPLAPATALTALDTALGHGDTAVTIA----DVDWSSFAPGFT 501 (525)
T ss_dssp ----------BCCBCHHHHHHHHHHHHHHTCSEEEEC----CBCHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHhCCCCeEEEE----eCCHHHHHhhcc
Confidence 135778999999999998765433222 344555554443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-12 Score=119.52 Aligned_cols=199 Identities=17% Similarity=0.090 Sum_probs=133.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEccc-CCc---------ccCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDV-TEP---------LLIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~-~~~---------~~~~ 94 (343)
+.+|.++||||++-||.++++.|.++| ++|++.+|.. .+.....+ ....+..+.+|+ .+. .+.+
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~---~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKD---ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSC---CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCcc---HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999 9999887621 12221111 123466677888 432 2346
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||...... ..++....+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~---------------- 459 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY---------------- 459 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------------
Confidence 999999999654221 234556788999999988877764 3444 999999976542
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|.....+.+.++.+ +|+++..+.|+. -.+. ...... . ......
T Consensus 460 ~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m--------~~~~~~-----~---------~~~~~~ 516 (604)
T 2et6_A 460 GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAM--------TLSIMR-----E---------QDKNLY 516 (604)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC-------------------------------CCSS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcc--------ccccCc-----h---------hhccCC
Confidence 2223457999999999988888866 479999999973 2211 011100 0 001235
Q ss_pred ehHHHHHHHHHHHhcCC---CcceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TGPVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~~~~~~~~ 268 (343)
..+|+|.+++.++.... +..+.+.++
T Consensus 517 ~pe~vA~~v~~L~s~~~~itG~~~~vdGG 545 (604)
T 2et6_A 517 HADQVAPLLVYLGTDDVPVTGETFEIGGG 545 (604)
T ss_dssp CGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred CHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence 78999999999886533 335555544
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-12 Score=118.47 Aligned_cols=218 Identities=15% Similarity=0.054 Sum_probs=139.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--------CCccchhhhcCCCceEEEEcccCCc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--------GSKDNLKKWIGHPRFELIRHDVTEP-------- 90 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~d~~~~-------- 90 (343)
+.+|.++||||++-||+++++.|.++| ++|++.+|... ...+...+.+...+-+. .+|+.|.
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~-~~d~~d~~~~~~~v~ 83 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA-VADYNNVLDGDKIVE 83 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCEE-EEECCCTTCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE-EEEcCCHHHHHHHHH
Confidence 467899999999999999999999999 99999877431 11111111111111121 2355443
Q ss_pred ----ccCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCC
Q 019309 91 ----LLIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 91 ----~~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~ 157 (343)
.+.++|++|||||...... ..++.+..+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~-------- 155 (604)
T 2et6_A 84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY-------- 155 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC--------
Confidence 1236999999999653221 233456788999999988877663 4444 999999976531
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|.....+.+.++.+ +|+++..+.|+ +.. .+.... ..
T Consensus 156 --------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T--------~m~~~~-------~~------ 205 (604)
T 2et6_A 156 --------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARS--------RMTESI-------MP------ 205 (604)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCC--------HHHHTT-------SC------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcC--------cccccc-------CC------
Confidence 1122357999999999999888876 47999999995 211 111000 00
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---CcceEecCC------------------CccCHHHHHHHHHHHhC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNP------------------GEFTMLELAETVKELIN 285 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~------------------~~~s~~e~~~~i~~~~g 285 (343)
.........+|+|.+++.++.... +..+.+.++ ..++..++.+.+.++..
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 276 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILD 276 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTC
T ss_pred -hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhc
Confidence 000113478999999999987543 224443332 34677888888877654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=123.92 Aligned_cols=197 Identities=20% Similarity=0.164 Sum_probs=130.9
Q ss_pred cCCCEEEEEcCchh-HHHHHHHHHHhcCCCeEEEEecCCCCCc-c---chhhhcC--CCceEEEEcccCCcc--------
Q 019309 27 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVADNYFTGSK-D---NLKKWIG--HPRFELIRHDVTEPL-------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~---~~~~~~~--~~~~~~~~~d~~~~~-------- 91 (343)
+.++++|||||+|. ||.++++.|.++| ++|+++++...... + .+...+. ...+.++.+|+.|..
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G-A~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG-AKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46789999999999 9999999999999 99998854321111 1 1111111 236888999999862
Q ss_pred -------cC-CCCEEEEecCCCCcc-c-c-----ccChHHHHHHHHHHHHHHHHHHH--H----cC-CeEEEEeCCcccC
Q 019309 92 -------LI-EVDQIYHLACPASPI-F-Y-----KYNPVKTIKTNVIGTLNMLGLAK--R----VG-ARILLTSTSEVYG 149 (343)
Q Consensus 92 -------~~-~~d~vi~~a~~~~~~-~-~-----~~~~~~~~~~nv~~~~~l~~~a~--~----~~-~r~i~~SS~~v~~ 149 (343)
+. .+|+||||||..... . . ..+....+++|+.++..++.+++ . .+ .+||++||...+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 22 589999999965432 1 1 23346788999999988887632 1 12 2899999976532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH-h--CCceEEEEecccc-CCCCCCCCccHHHHHHHHHHc
Q 019309 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-H--GIQIRIARIFNTY-GPRMNIDDGRVVSNFIAQALR 225 (343)
Q Consensus 150 ~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-~--~~~~~i~R~~~v~-G~~~~~~~~~~~~~~~~~~~~ 225 (343)
. ....|+.+|...+.++..+..+ . ++++..+.||++- ++.. .. .........
T Consensus 809 g------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~----~~--~~~~~~~~~ 864 (1878)
T 2uv9_A 809 G------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLM----SA--NNLVAEGVE 864 (1878)
T ss_dssp S------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSC----SH--HHHTHHHHH
T ss_pred C------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccc----cc--chhhHHHHH
Confidence 1 1346999999999988766543 1 2899999999887 3321 11 111111222
Q ss_pred CCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 226 GEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
...+ ....++|+|++++.++...
T Consensus 865 ~~pl----------r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 865 KLGV----------RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp TTTC----------CCBCHHHHHHHHHHHHSHH
T ss_pred hcCC----------CCCCHHHHHHHHHHHhCCc
Confidence 1111 1347899999999988653
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-11 Score=104.93 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=141.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh-cCCCeEEEEecCCCCCccc-----------hhhhc--CCCceEEEEcccCCcc-
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDN-----------LKKWI--GHPRFELIRHDVTEPL- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~d~~~~~- 91 (343)
..+|++|||||++-||.++++.|.+ .| .+|++++|........ ..... ....+..+.+|++++.
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4679999999999999999999999 99 9999988854332211 11111 1245788999999863
Q ss_pred -----------cCCCCEEEEecCCC---------------Ccc-----------------------ccccChHHHHHHHH
Q 019309 92 -----------LIEVDQIYHLACPA---------------SPI-----------------------FYKYNPVKTIKTNV 122 (343)
Q Consensus 92 -----------~~~~d~vi~~a~~~---------------~~~-----------------------~~~~~~~~~~~~nv 122 (343)
+.++|++||+||.. .+. ....+.+..+++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 34699999999863 010 12223445566776
Q ss_pred HHHH-HHHHHHHHc-----CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---h-C
Q 019309 123 IGTL-NMLGLAKRV-----GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---H-G 192 (343)
Q Consensus 123 ~~~~-~l~~~a~~~-----~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~-~ 192 (343)
.+.. .++.++... +.++|.+||....-. .+......|+.+|...+.+.+.++.+ . |
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~--------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G 269 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT--------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGG 269 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 6554 445544322 348999999865310 12222367999999999999888866 4 7
Q ss_pred CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCc-ceEecCCC--
Q 019309 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG-PVNIGNPG-- 269 (343)
Q Consensus 193 ~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~-~~~~~~~~-- 269 (343)
+++-.+.|+.+-.+...... ..+.......+ .+...+ ..+|+++++.+++...-.| ...+-++.
T Consensus 270 IRVNaVaPG~i~T~~s~~ip--~~p~y~~~l~~--~mkr~G---------~~Ed~a~~i~~L~sd~l~~~~~~~D~~~~~ 336 (405)
T 3zu3_A 270 GDARVSVLKAVVSQASSAIP--MMPLYLSLLFK--VMKEKG---------THEGCIEQVYSLYKDSLCGDSPHMDQEGRL 336 (405)
T ss_dssp CEEEEEECCCCCCHHHHTST--THHHHHHHHHH--HHHHHT---------CCCCHHHHHHHHHHHTTSSSCCCBCTTSCE
T ss_pred eEEEEEEeCCCcCchhhcCC--CCcHHHHHHHH--HHhcCC---------CcHHHHHHHHHHHhccccCCCCCcCCCcCC
Confidence 89999999988765321111 11111111111 111111 2268999999999864433 22233322
Q ss_pred ccCHHHHHHHHHHHh
Q 019309 270 EFTMLELAETVKELI 284 (343)
Q Consensus 270 ~~s~~e~~~~i~~~~ 284 (343)
.+--.|+-+.+++..
T Consensus 337 r~d~~e~~~~~q~~~ 351 (405)
T 3zu3_A 337 RADYKELDPEVQNQV 351 (405)
T ss_dssp ECCHHHHCHHHHHHH
T ss_pred CCchhhcCHHHHHHH
Confidence 344556666665544
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-11 Score=124.16 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=131.3
Q ss_pred cCCCEEEEEcCchh-HHHHHHHHHHhcCCCeEEEEe-cCCCCCccchh---hhcC--CCceEEEEcccCCcc--------
Q 019309 27 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVAD-NYFTGSKDNLK---KWIG--HPRFELIRHDVTEPL-------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~---~~~~--~~~~~~~~~d~~~~~-------- 91 (343)
+.++++|||||+|. ||.++++.|.++| ++|++++ |......+... ..+. ...+.++.+|+.+..
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 46789999999999 9999999999999 9999884 43211111111 1111 246888999999862
Q ss_pred ---------cC-CCCEEEEecCCCCcc-cc------ccChHHHHHHHHHHHHHHHHHHHHc------C-CeEEEEeCCcc
Q 019309 92 ---------LI-EVDQIYHLACPASPI-FY------KYNPVKTIKTNVIGTLNMLGLAKRV------G-ARILLTSTSEV 147 (343)
Q Consensus 92 ---------~~-~~d~vi~~a~~~~~~-~~------~~~~~~~~~~nv~~~~~l~~~a~~~------~-~r~i~~SS~~v 147 (343)
+. .+|+||||||..... .. ..+....+++|+.++..++.+++.. + .+||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 22 599999999975432 11 2334678899999999999887322 2 27999999865
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHH-HHHHHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHH
Q 019309 148 YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETL-MFDYHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL 224 (343)
Q Consensus 148 ~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~-~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~ 224 (343)
+.. ....|+.+|...+.+ .+.++.+.+ +++..+.||++.+...... ....... .
T Consensus 832 ~~g------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~-~~~~~~~----~ 888 (1887)
T 2uv8_A 832 TFG------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NNIIAEG----I 888 (1887)
T ss_dssp CSS------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC------CCTTHHH----H
T ss_pred ccC------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccccccccc-chhHHHH----H
Confidence 421 235699999999998 555554333 8999999999985321100 0111111 1
Q ss_pred cCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 225 RGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
....+ .+..++|+|++++.++...
T Consensus 889 ~~~pl----------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 889 EKMGV----------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp HTTSC----------CCEEHHHHHHHHHGGGSHH
T ss_pred HhcCC----------CCCCHHHHHHHHHHHhCCC
Confidence 11110 2347899999999999765
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-11 Score=106.24 Aligned_cols=204 Identities=14% Similarity=0.028 Sum_probs=128.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh-cCCCeEEEEecCCCCCccc-----------hhhhc--CCCceEEEEcccCCc--
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVADNYFTGSKDN-----------LKKWI--GHPRFELIRHDVTEP-- 90 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~d~~~~-- 90 (343)
..+|++|||||++-||.++++.|.+ .| .+|+++.|........ ..+.. ....+..+.+|++++
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAA 137 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHH
Confidence 3578999999999999999999999 99 9999998865432221 11111 123577899999986
Q ss_pred ----------cc-CCCCEEEEecCCC-------------C--cc-----------------------ccccChHHHHHHH
Q 019309 91 ----------LL-IEVDQIYHLACPA-------------S--PI-----------------------FYKYNPVKTIKTN 121 (343)
Q Consensus 91 ----------~~-~~~d~vi~~a~~~-------------~--~~-----------------------~~~~~~~~~~~~n 121 (343)
.+ .++|++||+||.. . +. ....+....+++|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 24 5799999999852 0 10 0112233444555
Q ss_pred HHHHH-HHHHHHHHc-----CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---C
Q 019309 122 VIGTL-NMLGLAKRV-----GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---G 192 (343)
Q Consensus 122 v~~~~-~l~~~a~~~-----~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~ 192 (343)
..+.. .++.++... +.++|.+||....-. .+......|+.+|...+.+.+.++.+. |
T Consensus 218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~--------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~G 283 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEIT--------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHG 283 (422)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG--------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCccC
Confidence 54443 445555432 237999999864310 111112569999999999988888664 7
Q ss_pred CceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 193 IQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 193 ~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
+++..+.||.|-.+..... ...+.......+ ++...+ ..+|+++++..++...
T Consensus 284 IRVNaVaPG~i~T~~~~~i--p~~~~~~~~~~~--~m~r~G---------~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 284 GGANVAVLKSVVTQASAAI--PVMPLYISMVYK--IMKEKG---------LHEGTIEQLDRLFRER 336 (422)
T ss_dssp CEEEEEEECCCCCTTGGGS--THHHHHHHHHHH--HHHHTT---------CCCCHHHHHHHHHHHT
T ss_pred EEEEEEEcCCCcChhhhcC--CCChHHHHHHHh--hhcCCc---------ChHHHHHHHHHHhcch
Confidence 9999999999887653211 111111111111 111111 1278999999998764
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-12 Score=125.06 Aligned_cols=198 Identities=18% Similarity=0.158 Sum_probs=129.2
Q ss_pred cCCCEEEEEcCchh-HHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcC-----CCceEEEEcccCCcc--------
Q 019309 27 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPL-------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~-------- 91 (343)
++++++|||||+|. ||.++++.|.++| ++|+++ .|......+....+.. ...+.++.+|+.+..
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 46789999999998 9999999999999 999888 4543222222222211 235788999999862
Q ss_pred ---------cC-CCCEEEEecCCCCcc-cc------ccChHHHHHHHHHHHHHHHHHHHH------cC-CeEEEEeCCcc
Q 019309 92 ---------LI-EVDQIYHLACPASPI-FY------KYNPVKTIKTNVIGTLNMLGLAKR------VG-ARILLTSTSEV 147 (343)
Q Consensus 92 ---------~~-~~d~vi~~a~~~~~~-~~------~~~~~~~~~~nv~~~~~l~~~a~~------~~-~r~i~~SS~~v 147 (343)
+. .+|+|||+||..... .. ..+....+++|+.++..++.+++. .+ .+||++||...
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 22 589999999965432 11 233466789999999999888732 12 27999999765
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHH-HHHHhC--CceEEEEeccccCCCCCCCCccHHHHHHHHHH
Q 019309 148 YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQHG--IQIRIARIFNTYGPRMNIDDGRVVSNFIAQAL 224 (343)
Q Consensus 148 ~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~-~~~~~~--~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~ 224 (343)
+. + ....|+.+|...+.++.. ++.+.+ +++..+.||++.|....... . ......
T Consensus 633 ~~----------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e----~~~~~l 689 (1688)
T 2pff_A 633 TF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-N----IIAEGI 689 (1688)
T ss_dssp TS----------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-T----TCSTTT
T ss_pred cc----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-h----HHHHHH
Confidence 32 1 235699999999998433 333222 78888899888753211000 0 000000
Q ss_pred cCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 225 RGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
. .. ......++|+|++++.++...
T Consensus 690 ~--~i--------plR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 690 E--KM--------GVRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp S--SS--------SCCCCCCCTTHHHHHHHTSTT
T ss_pred H--hC--------CCCCCCHHHHHHHHHHHhCCC
Confidence 0 00 012347799999999999766
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=118.19 Aligned_cols=201 Identities=15% Similarity=0.126 Sum_probs=135.5
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHH-hcCCCeEEEEecCCCCCc--cchhhhc--CCCceEEEEcccCCccc--------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVADNYFTGSK--DNLKKWI--GHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~--~~~~~~~--~~~~~~~~~~d~~~~~~-------- 92 (343)
+..++++|||||+|.||..+++.|. ++|...|+++.|+..... +.+.+.+ ...++.++.+|++|...
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3467899999999999999999999 789336888888632221 1111111 12468899999998621
Q ss_pred ---CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 93 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 93 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
..+|.|||+||...... ..++....++.|+.++.++.+++.. ..+||++||...+-
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l~iV~~SS~ag~~---------------- 669 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DVALVLFSSVSGVL---------------- 669 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TSEEEEEEETHHHH----------------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CCEEEEEccHHhcC----------------
Confidence 25899999999764322 2234556788999999999998832 22899999987642
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHH-HHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVV-SNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.......|+.+|...+.+.+++.. .|+++..+-||.+-+++. .... ......+.+.+ +..+..
T Consensus 670 g~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~----~~~~~~~~~~~~~~~g-----------~~~l~~ 733 (795)
T 3slk_A 670 GSGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGM----ASTLREAEQDRLARSG-----------LLPIST 733 (795)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCH----HHHHHHHHHHHHHHTT-----------BCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchh----hccccHHHHHHHHhcC-----------CCCCCH
Confidence 223346799999988888877754 499999999988765531 0010 11111111111 124566
Q ss_pred HHHHHHHHHHHhcCC
Q 019309 245 SDMVDGLIRLMEGEN 259 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~ 259 (343)
++....+..++....
T Consensus 734 ~e~~~~~~~~l~~~~ 748 (795)
T 3slk_A 734 EEGLSQFDAACGGAH 748 (795)
T ss_dssp HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhCCC
Confidence 788888888887644
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=102.56 Aligned_cols=166 Identities=10% Similarity=-0.096 Sum_probs=110.8
Q ss_pred cCCCEEEEEcCchhHHHH--HHHHHHhcCCCeEEEEecCCCCCc-----------cchhhhc--CCCceEEEEcccCCcc
Q 019309 27 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVADNYFTGSK-----------DNLKKWI--GHPRFELIRHDVTEPL 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~--~~~~~~~~~~d~~~~~ 91 (343)
..+|++|||||++-||.+ +++.|.++| ++|+++.|...... +.+.... ....+..+.+|+++..
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 468999999999999999 999999999 99999988643321 1222111 1245788999999862
Q ss_pred ------------cCCCCEEEEecCCC---------------Ccc-----------------------ccccChHHHHHHH
Q 019309 92 ------------LIEVDQIYHLACPA---------------SPI-----------------------FYKYNPVKTIKTN 121 (343)
Q Consensus 92 ------------~~~~d~vi~~a~~~---------------~~~-----------------------~~~~~~~~~~~~n 121 (343)
..++|++||+||.. .+. ....+....+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 23699999999863 000 0111223344444
Q ss_pred HHHHH-HHHHHHHHc-----CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH----h
Q 019309 122 VIGTL-NMLGLAKRV-----GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----H 191 (343)
Q Consensus 122 v~~~~-~l~~~a~~~-----~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~ 191 (343)
..+.. .++.++... +.++|.+||....-. .+......|+.+|...+.+.+.++.+ .
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~ 282 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVI 282 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44333 445554433 237999999754310 12222367999999999888877754 5
Q ss_pred CCceEEEEeccccCCC
Q 019309 192 GIQIRIARIFNTYGPR 207 (343)
Q Consensus 192 ~~~~~i~R~~~v~G~~ 207 (343)
|+++..+.|+.|-.+.
T Consensus 283 GIrVN~V~PG~v~T~~ 298 (418)
T 4eue_A 283 GGRAFVSVNKALVTKA 298 (418)
T ss_dssp SCEEEEEECCCCCCHH
T ss_pred CeEEEEEECCcCcChh
Confidence 8999999999887653
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=97.99 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=107.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC------eEEEEecC----CCCCccchhhhcCC--Cce-EEEEcccCCcccCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVADNY----FTGSKDNLKKWIGH--PRF-ELIRHDVTEPLLIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~------~V~~~~r~----~~~~~~~~~~~~~~--~~~-~~~~~d~~~~~~~~ 94 (343)
+.|||+|+||+||+|++++..|+..+.. +|+++++. .........++... .-. ++...+-...++.+
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 3589999999999999999999998831 78888764 11000101111110 111 11111111235779
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeCCcc---cCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEV---YGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~--r~i~~SS~~v---~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+|+|||+||... ....+..+++..|+..+.++++++.+.+ . +||++|...- |-... ..+ -..
T Consensus 84 aD~Vi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~---~~~-------~~p 151 (329)
T 1b8p_A 84 ADVALLVGARPR--GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMK---SAP-------SLP 151 (329)
T ss_dssp CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH---TCT-------TSC
T ss_pred CCEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHH---HcC-------CCC
Confidence 999999998543 2334566788999999999999999984 4 7888886320 00000 000 111
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
+...++.+++...++...+++..|++...++..+|+|..
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 223488888878888888888888888888877788854
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=79.53 Aligned_cols=93 Identities=23% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
++|+|+|+|+ |++|+.+++.|.+.|.++|++++|+. +...... ..++.++.+|+.+. .+.++|+||+++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~----~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDL----AALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCH----HHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCH----HHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 4689999999 99999999999999867899998842 2222222 35778888999875 345899999998
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+.. ....+++++.+.+++++.+|+
T Consensus 78 ~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 78 PFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp CGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred Cch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 521 135788999999997665554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-09 Score=113.23 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=113.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCCCCCc---cchhhhc-CCCceEEEEcccCCcc---------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTGSK---DNLKKWI-GHPRFELIRHDVTEPL--------- 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~d~~~~~--------- 91 (343)
+..+++++||||+|-||.++++.|.++| .+ |+++.|+..... .....+. ...++.++.+|+.+..
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~G-a~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~ 1959 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRG-AQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEA 1959 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCC-CCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999 65 788888643321 1111111 1246788899999863
Q ss_pred --cCCCCEEEEecCCCCcc----ccccChHHHHHHHHHHHHHHHHHHHHc--C-CeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~a~~~--~-~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
...+|+|||+||..... ...++....++.|+.++.++.+++... . .+||++||....-
T Consensus 1960 ~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~------------- 2026 (2512)
T 2vz8_A 1960 TQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR------------- 2026 (2512)
T ss_dssp HHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT-------------
T ss_pred HhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC-------------
Confidence 23699999999965321 123445567789999999998887654 2 2899999977542
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G 205 (343)
.......|+.+|...+.+.+....+ |++...+-.+.+-+
T Consensus 2027 ---g~~g~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2027 ---GNAGQANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp ---TCTTCHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 1223457999999999999877655 89999998876543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=88.00 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=76.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEec--CCCCCcc---chhhhcC-CCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADN--YFTGSKD---NLKKWIG-HPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r--~~~~~~~---~~~~~~~-~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||+|+||+|++|++++..|+..+.. ++.++++ ....... .+.+... ...+++...| ..++.++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 78999999999999999999998732 5777776 2211000 0111100 1244444433 45678999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~ 145 (343)
|... .......+++..|+..+.++++++++.+. .+|+++|-
T Consensus 79 g~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 79 GIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 8542 22334567789999999999999999987 67777663
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=87.40 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=100.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEec--CCCCCcc---chhhhcCC--CceEEEEcc-cCCcccCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADN--YFTGSKD---NLKKWIGH--PRFELIRHD-VTEPLLIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r--~~~~~~~---~~~~~~~~--~~~~~~~~d-~~~~~~~~~d~vi~ 100 (343)
|||+|+||+||+|++++..|+..+. .++.++++ ....... .+...... ..+++...+ -...++.++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 6899999999999999999999883 25777776 2110000 01111111 234554433 13456789999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHH-hHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDE-GKRV 179 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~-~K~~ 179 (343)
+||... .......+++..|+..+.++++++++.+-++|+++|--+.- ..+-.+ ......+...+|. +.+-
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SNPv~~------~t~~~~-k~~~~p~~rviG~gt~LD 151 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDV------MTYKAL-VDSKFERNQVFGLGTHLD 151 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSSHHH------HHHHHH-HHHCCCTTSEEECTTHHH
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCcHHH------HHHHHH-HhhCcChhcEEEeCccHH
Confidence 998543 22345567889999999999999998873366666532210 000000 0011223345666 5655
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCC
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGP 206 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~ 206 (343)
..++....++..|++..-++. .++|.
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 666666666666776555654 55553
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=87.46 Aligned_cols=113 Identities=14% Similarity=-0.015 Sum_probs=76.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC--CC-ceEEEEcc-cCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG--HP-RFELIRHD-VTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~d-~~~~~~~~~d~vi~~a 102 (343)
+.|||+|+||+||+|..++..|..+|. ++|+++++... .....++.. .. .+..+.+. -...++.++|+|||++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a 84 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 84 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence 458999999999999999999998763 47888886432 111111111 11 23222121 1123577999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS 144 (343)
|... .......++...|+..+.++++++.+.+. .+|+++|
T Consensus 85 g~~~--~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 85 GVPR--KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp CCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CcCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 8543 22234457789999999999999999887 6777776
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=102.83 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=135.9
Q ss_pred cCCCEEEEEcCchh-HHHHHHHHHHhcCCCeEEEEecCCCCC----ccchhhhcC--CCceEEEEcccCCcc--------
Q 019309 27 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVADNYFTGS----KDNLKKWIG--HPRFELIRHDVTEPL-------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~-iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~~~~~~~--~~~~~~~~~d~~~~~-------- 91 (343)
..+|++|||||++- ||.++++.|.++| .+|++++|+.... .+.+...+. ...+..+.+|++++.
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 47899999999999 9999999999999 9999998854321 111222222 135678899999752
Q ss_pred --------cCCCCEEEEecCCCC----c-----cccccCh----HHHHHHHHHHHHHHHHHHHH----cCC----eEEEE
Q 019309 92 --------LIEVDQIYHLACPAS----P-----IFYKYNP----VKTIKTNVIGTLNMLGLAKR----VGA----RILLT 142 (343)
Q Consensus 92 --------~~~~d~vi~~a~~~~----~-----~~~~~~~----~~~~~~nv~~~~~l~~~a~~----~~~----r~i~~ 142 (343)
+.++|++|||||... . .....+. ...++.|+.++..++.++.. .+. .+|..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 235999999999611 0 0011222 23367888887777666543 232 23332
Q ss_pred eCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH--h--CCceEEEEeccccCCCCCCCCccHHHH
Q 019309 143 STSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ--H--GIQIRIARIFNTYGPRMNIDDGRVVSN 218 (343)
Q Consensus 143 SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--~--~~~~~i~R~~~v~G~~~~~~~~~~~~~ 218 (343)
+|.. .+ .......|+.+|...+.+.+.++.+ . ++++..+.||++-+........ ....
T Consensus 2293 ~ss~-~g----------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~-~~~~ 2354 (3089)
T 3zen_D 2293 GSPN-RG----------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQND-AIVS 2354 (3089)
T ss_dssp ECSS-TT----------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTT-TTHH
T ss_pred CCcc-cc----------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccch-hHHH
Confidence 2211 11 1112246999999999999999888 3 4677888888887543211111 1111
Q ss_pred HHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-----Ccc--eEecCCC---ccCHHHHHHHHHH
Q 019309 219 FIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-----TGP--VNIGNPG---EFTMLELAETVKE 282 (343)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-----~~~--~~~~~~~---~~s~~e~~~~i~~ 282 (343)
...... ......+|+|.+++.++.... ... ..+.++- ...+.++...+.+
T Consensus 2355 ----~~~~~~----------~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2355 ----AVEEAG----------VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp ----HHGGGS----------CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred ----HHHhcC----------CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 111100 012278999999999987543 122 3344543 3688888876643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=66.01 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~~ 101 (343)
.+|+|+|+|+ |++|+.+++.|.+.| ++|++++|+. +.........++.++.+|..+. .+.++|+||++
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~----~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDK----DICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCH----HHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 3589999996 999999999999999 9999998742 2222221112566778887654 24579999998
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~S 143 (343)
.+.. ..|. .+...+++.+. ++|..+
T Consensus 77 ~~~~-------------~~~~----~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 77 TGKE-------------EVNL----MSSLLAKSYGINKTIARI 102 (140)
T ss_dssp CSCH-------------HHHH----HHHHHHHHTTCCCEEEEC
T ss_pred eCCc-------------hHHH----HHHHHHHHcCCCEEEEEe
Confidence 7310 1222 45566777776 666543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=66.81 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~ 101 (343)
++++|+|+|+ |.+|+.+++.|.+.| ++|++++|.. +.... +.......+.+|..+.. ..++|+||++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d~~~----~~~~~-~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINE----EKVNA-YASYATHAVIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCH----HHHHT-TTTTCSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHH-HHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 3468999998 999999999999999 8999998742 22222 12234567778877642 4579999998
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~ 145 (343)
++.. .+.|. .++..+++.+. ++|..++.
T Consensus 78 ~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 78 IGAN------------IQAST----LTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CCSC------------HHHHH----HHHHHHHHTTCSEEEEECCS
T ss_pred CCCc------------hHHHH----HHHHHHHHcCCCeEEEEeCC
Confidence 8521 02222 35667777777 66665554
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=81.11 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=55.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCc-----ccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEP-----LLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-----~~~~~d~vi~ 100 (343)
..+++++||||+|.+|++++..|.+.| .+|++++|+... .+.+...+. ..++.++.+|+.+. .+.++|+|||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G-~~V~i~~R~~~~-~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn 194 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDK-AQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 194 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCHHH-HHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence 467999999999999999999999999 889999985322 111211111 12456677888764 2446999999
Q ss_pred ecCC
Q 019309 101 LACP 104 (343)
Q Consensus 101 ~a~~ 104 (343)
+++.
T Consensus 195 ~ag~ 198 (287)
T 1lu9_A 195 AGAI 198 (287)
T ss_dssp CCCT
T ss_pred CCCc
Confidence 9974
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-06 Score=64.05 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=52.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~ 101 (343)
++++|+|+|+ |++|+++++.|.++| ++|++++++. +...... ..++.++.+|..++. ..++|+||.+
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~----~~~~~~~-~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSK----EKIELLE-DEGFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCH----HHHHHHH-HTTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCH----HHHHHHH-HCCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 3468999997 999999999999999 9999999742 2222222 246788999998873 3479999987
Q ss_pred cC
Q 019309 102 AC 103 (343)
Q Consensus 102 a~ 103 (343)
.+
T Consensus 78 ~~ 79 (141)
T 3llv_A 78 GS 79 (141)
T ss_dssp CS
T ss_pred cC
Confidence 74
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=77.54 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=68.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCc-----ccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEP-----LLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-----~~~~~d~vi~ 100 (343)
|.+|+|+|+| +|++|+++++.|.+.| ++|++++|.. +....... ..++..+.+|+.+. .+.++|+|||
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~~----~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRTL----ESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESSH----HHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECCH----HHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 3568999998 8999999999999999 8999998842 22222211 12477888898764 2458999999
Q ss_pred ecCCCCccccccChHHHHHH--H-------HHHHHHHHHHHHHcCCeE
Q 019309 101 LACPASPIFYKYNPVKTIKT--N-------VIGTLNMLGLAKRVGARI 139 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~--n-------v~~~~~l~~~a~~~~~r~ 139 (343)
|++...... -....++. + ......++++|++.|+++
T Consensus 75 ~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 75 LIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp CCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred CCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 997532110 01111221 1 135678899999998864
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=73.00 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=74.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC---CCceEEEEc-ccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG---HPRFELIRH-DVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~-d~~~~~~~~~d~vi~~a~~ 104 (343)
|||.|+||+|++|..++..|...+. .+|+++++.. ......++.. ...++.+.+ +-...++.++|+||+++|.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 6899999999999999999998773 5799998854 1111112111 112333222 1112257899999999985
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
.. ....+..+....|+.....+++.+.+... ++|++|-
T Consensus 79 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 79 PR--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 43 22234456789999999999999988765 6777653
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=70.41 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=52.6
Q ss_pred CCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-
Q 019309 28 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP- 90 (343)
Q Consensus 28 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 90 (343)
.||+|||||| ||.+|.+++++|.++| ++|+++.|...-.. . ...+++.+..+..+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G-a~V~lv~~~~~~~~-----~-~~~~~~~~~v~s~~em 74 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG-YEVCLITTKRALKP-----E-PHPNLSIREITNTKDL 74 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT-CEEEEEECTTSCCC-----C-CCTTEEEEECCSHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC-CEEEEEeCCccccc-----c-CCCCeEEEEHhHHHHH
Confidence 5899999999 9999999999999999 99999998532111 0 013566665544332
Q ss_pred ------ccCCCCEEEEecCCCC
Q 019309 91 ------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ------~~~~~d~vi~~a~~~~ 106 (343)
.+.++|++||+|+...
T Consensus 75 ~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 75 LIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp HHHHHHHGGGCSEEEECSBCCS
T ss_pred HHHHHHhcCCCCEEEEcCcccc
Confidence 2347999999998653
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=73.59 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=43.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC--ccchhhhc--CCCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS--KDNLKKWI--GHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~--~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+.+|||.|+|++|.+|+.+++.+.+...++++++.+..... ........ ...++.. ..|+. ..+.++|+||+++
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~-~~dl~-~~l~~~DvVIDft 80 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSLD-AVKDDFDVFIDFT 80 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCST-TTTTSCSEEEECS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee-cCCHH-HHhcCCCEEEEcC
Confidence 34589999999999999999998865437777544322111 01111111 1112222 23442 3344799999887
Q ss_pred C
Q 019309 103 C 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 81 ~ 81 (273)
T 1dih_A 81 R 81 (273)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=76.05 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
.+|||+|+|| |++|+.+++.|.+ . ++|++.+|.. +.+... ...+..+..|..|. .+.++|+||+++
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~-~~v~~~~~~~----~~~~~~--~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-E-FDVYIGDVNN----ENLEKV--KEFATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-T-SEEEEEESCH----HHHHHH--TTTSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-C-CCeEEEEcCH----HHHHHH--hccCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 5689999998 9999999998865 4 7999988742 222222 23566778888776 345899999998
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
++.. ...++++|.++|+++|=+|
T Consensus 86 p~~~------------------~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 86 PGFL------------------GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp CGGG------------------HHHHHHHHHHHTCEEEECC
T ss_pred CCcc------------------cchHHHHHHhcCcceEeee
Confidence 5321 1368999999999988765
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=76.08 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=63.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcC-----CCeEEEEecCC-CCC-ccchhhhcCC-CceEEEEcccCCcccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENE-----KNEVIVADNYF-TGS-KDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g-----~~~V~~~~r~~-~~~-~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi 99 (343)
++|+|.|.||||++|+.|++.|.+++ ..+++++.+.. .+. -......+.. ..+.+...| ...+.++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 34799999999999999999999887 56777775421 111 1111111100 122332222 22345899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.|.+... ...++..+ +.|+++|-+|+.+-+
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~R~ 115 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADFRL 115 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTTTC
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCccC
Confidence 9986432 23567777 778899999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.19 E-value=7.4e-06 Score=63.20 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=54.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~ 100 (343)
|.+++|+|+|+ |.+|+.+++.|.+.| ++|+++++......+.+..... .++.++.+|.+++. +.++|+||.
T Consensus 1 ~~~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 1 HRKDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhc-CCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 35678999995 999999999999999 9999998742111112222222 46889999998762 557999998
Q ss_pred ecC
Q 019309 101 LAC 103 (343)
Q Consensus 101 ~a~ 103 (343)
+.+
T Consensus 78 ~~~ 80 (153)
T 1id1_A 78 LSD 80 (153)
T ss_dssp CSS
T ss_pred ecC
Confidence 763
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.1e-06 Score=72.82 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=60.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEe-cCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVAD-NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+|+|+|+|.||+|++|+.+++.|.++++ .+++++. +......-. +....+.+...|. ..+.++|+||.|.+
T Consensus 4 ~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~g~~i~~~~~~~--~~~~~~DvV~~a~g 77 (340)
T 2hjs_A 4 SQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FAESSLRVGDVDS--FDFSSVGLAFFAAA 77 (340)
T ss_dssp -CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ETTEEEECEEGGG--CCGGGCSEEEECSC
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cCCcceEEecCCH--HHhcCCCEEEEcCC
Confidence 4568999999999999999999997652 3555553 321111111 1111223322232 23458999999875
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
.. ....++..+.+.|+++|.+|+.+
T Consensus 78 ~~------------------~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 78 AE------------------VSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp HH------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred cH------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence 21 13456777788899999888875
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-06 Score=77.32 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=66.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCcc-----cC--CCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPL-----LI--EVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~-----~~--~~d~ 97 (343)
|+|+|+|| |++|+.+++.|.+.|. .+|++.+|+.... +.+...+. ..++..+.+|+.+.. +. ++|+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKC-QEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHH-HHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHH-HHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 68999998 9999999999999984 2899988853221 11222111 135888899998752 22 3899
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
|||++++.. ...++++|.+.|++++-+++
T Consensus 80 Vin~ag~~~------------------~~~v~~a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 80 VLNIALPYQ------------------DLTIMEACLRTGVPYLDTAN 108 (405)
T ss_dssp EEECSCGGG------------------HHHHHHHHHHHTCCEEESSC
T ss_pred EEECCCccc------------------ChHHHHHHHHhCCCEEEecC
Confidence 999996421 13678899999988775433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-05 Score=59.54 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~~ 101 (343)
.+++|+|+|+ |.+|..+++.|.+.| ++|++++|+.. .........++.++.+|..+. .+.++|+||.+
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~~~----~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKNEY----AFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGG----GGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHH----HHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 5689999995 999999999999999 99999987432 222221124566777876553 14579999988
Q ss_pred cC
Q 019309 102 AC 103 (343)
Q Consensus 102 a~ 103 (343)
.+
T Consensus 92 ~~ 93 (155)
T 2g1u_A 92 TN 93 (155)
T ss_dssp SS
T ss_pred eC
Confidence 74
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-06 Score=74.27 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-e-----EEEEecCCC-CCcc-chhhhcC--CCceEEEEc-ccCCcccCCCCEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-E-----VIVADNYFT-GSKD-NLKKWIG--HPRFELIRH-DVTEPLLIEVDQI 98 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~-----V~~~~r~~~-~~~~-~~~~~~~--~~~~~~~~~-d~~~~~~~~~d~v 98 (343)
|||+|+||+|+||++++..|...+.. + ++++++... ...+ ...++.. .+-..-+.. +-...++.++|+|
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV 83 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence 78999999999999999999988732 4 888876321 0001 1111111 111211111 1112357799999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC---eEEEEeC
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST 144 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~---r~i~~SS 144 (343)
|++||... ....+..+.++.|+.....+++++.+++. +++.+|-
T Consensus 84 vitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 84 ILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99998532 22345567789999999999999999875 4666654
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.9e-05 Score=67.34 Aligned_cols=77 Identities=16% Similarity=-0.023 Sum_probs=56.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHH-hcCCCeEEEEecCCCCCccc-----------hhhhc--CCCceEEEEcccCCcc--
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVADNYFTGSKDN-----------LKKWI--GHPRFELIRHDVTEPL-- 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~d~~~~~-- 91 (343)
..|++||||||.-+|.+.+..|. +.| ..|+++.+........ ..+.. .-.....+.+|+.+++
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~G-A~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYG-AATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCC-CCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 56999999999999999998887 678 8888888754332211 11111 1246788999999863
Q ss_pred ----------cCCCCEEEEecCCC
Q 019309 92 ----------LIEVDQIYHLACPA 105 (343)
Q Consensus 92 ----------~~~~d~vi~~a~~~ 105 (343)
+.++|++||+++..
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEecccc
Confidence 34799999999854
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=72.37 Aligned_cols=98 Identities=8% Similarity=0.046 Sum_probs=61.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhh---hcCC-CceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK---WIGH-PRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+++|||.|.||+|++|+.+++.|.+++..+++++.+.... ...+.. .+.. ..+.+. ++. .+.++|+||.|.
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~-g~~~~~~~~~~~g~~~~~~~--~~~--~~~~vDvV~~a~ 76 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFA-GEPVHFVHPNLRGRTNLKFV--PPE--KLEPADILVLAL 76 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTT-TSBGGGTCGGGTTTCCCBCB--CGG--GCCCCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhh-CchhHHhCchhcCccccccc--chh--HhcCCCEEEEcC
Confidence 3458999999999999999999998874577777653211 111111 1110 122222 221 246899999998
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
+... ...++..+.+.|+++|-+|+.+-
T Consensus 77 g~~~------------------s~~~a~~~~~aG~~VId~Sa~~r 103 (345)
T 2ozp_A 77 PHGV------------------FAREFDRYSALAPVLVDLSADFR 103 (345)
T ss_dssp CTTH------------------HHHTHHHHHTTCSEEEECSSTTS
T ss_pred CcHH------------------HHHHHHHHHHCCCEEEEcCcccc
Confidence 5321 23566677788889999998753
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=65.21 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=50.0
Q ss_pred cCCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc
Q 019309 27 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 27 ~~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 90 (343)
+.+|+|||||| ||.+|.++++.|.++| ++|+++.+... +.. ..+++. .|+.+.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~~~~-----l~~---~~g~~~--~dv~~~ 74 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVS-----LPT---PPFVKR--VDVMTA 74 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCC-----CCC---CTTEEE--EECCSH
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEECCcc-----ccc---CCCCeE--EccCcH
Confidence 36899999999 6999999999999999 99999887431 110 123443 344332
Q ss_pred ---------ccCCCCEEEEecCCCC
Q 019309 91 ---------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ---------~~~~~d~vi~~a~~~~ 106 (343)
.+.++|++||+||...
T Consensus 75 ~~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 75 LEMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHHHHhcCCCCEEEECCcccC
Confidence 2346999999999653
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=70.60 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----------CceEEEEcccCCcccC-CCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----------PRFELIRHDVTEPLLI-EVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~-~~d 96 (343)
|++||.|.||+|++|+.+++.|.+++..+|+++.++.......+...... ..+.+...|..+ ... ++|
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D 85 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKH-EEFEDVD 85 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTS-GGGTTCC
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHH-HhcCCCC
Confidence 45799999999999999999999876467887765321111112111110 112222223322 123 899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
+||.|.+.. ....++..+.+.|+++|-.|+.+-+
T Consensus 86 vV~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~~R~ 119 (354)
T 1ys4_A 86 IVFSALPSD------------------LAKKFEPEFAKEGKLIFSNASAYRM 119 (354)
T ss_dssp EEEECCCHH------------------HHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred EEEECCCch------------------HHHHHHHHHHHCCCEEEECCchhcC
Confidence 999987421 1234666667788898888876543
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.01 E-value=8e-06 Score=71.39 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=73.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccc---hhhh-cCCCceEEEEcccCCcccCCCCEEEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDN---LKKW-IGHPRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~-~~~~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
+|.+|||.|+|++|++|+.++..|+..|. .+|+++++........ +... ....++.+ ..|. ..++.++|+||.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d~-~~al~dADvVvi 82 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSDI-KEALTDAKYIVS 82 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESCH-HHHHTTEEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCCH-HHHhCCCCEEEE
Confidence 46678999999999999999999999983 4899988742111110 1111 11112332 1221 124678999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--e-EEEEe
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--R-ILLTS 143 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r-~i~~S 143 (343)
++|... ....+..+.+..|+.....+++.+.+.+. . ++.+|
T Consensus 83 taG~p~--kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 83 SGGAPR--KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred ccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 998432 22334567789999999999999988765 3 45554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-05 Score=67.02 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccc---hhhhcCC--CceEEEEcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDN---LKKWIGH--PRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~~~--~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
..|||.|+|+ |++|..++..|...|. .+|+++++........ +...... ..+++...|. .++.++|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~--~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY--EDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG--GGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH--HHhCCCCEEEEe
Confidence 4689999995 9999999999999983 2899998742111110 1111111 2455554443 467799999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
+|... ....+..+.+..|......+++.+.+... .++.+|-
T Consensus 81 ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 81 AGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 98432 22334567789999999999999988765 5665553
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.4e-06 Score=71.49 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=62.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----------CceEEEEcccCCcccCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----------PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~d 96 (343)
++++||.|.||+|++|+.+++.|.++...+++++..+.......+...... ..+.+...|. ..+.++|
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vD 79 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVD 79 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCS
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCC
Confidence 345799999999999999999998876457777752111111112111110 1222322222 2345899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
+||.|.+.. ....++..+.+.|+++|-.|+.+-+
T Consensus 80 vVf~atp~~------------------~s~~~a~~~~~aG~~VId~s~~~R~ 113 (350)
T 2ep5_A 80 VVLSALPNE------------------LAESIELELVKNGKIVVSNASPFRM 113 (350)
T ss_dssp EEEECCCHH------------------HHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred EEEECCChH------------------HHHHHHHHHHHCCCEEEECCccccC
Confidence 999877421 1345777788889998888887533
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=69.44 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC---eEEEEe-cCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVAD-NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|+++|.|.||||++|+.|++.|.+++ + ++..+. ++..+..-. + .+.+....++....+.++|+||.|.+
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~-~p~~el~~~as~~saG~~~~----~--~~~~~~~~~~~~~~~~~~Dvvf~a~~ 73 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEEST-LPIDKIRYLASARSAGKSLK----F--KDQDITIEETTETAFEGVDIALFSAG 73 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCC-CCEEEEEEEECTTTTTCEEE----E--TTEEEEEEECCTTTTTTCSEEEECSC
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCC-CCcEEEEEEEccccCCCcce----e--cCCCceEeeCCHHHhcCCCEEEECCC
Confidence 46899999999999999999999886 4 344443 221111111 1 12222223333334568999999885
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.. .....+..+.+.|+++|=+|+.+-+
T Consensus 74 ~~------------------~s~~~a~~~~~~G~~vIDlSa~~R~ 100 (366)
T 3pwk_A 74 SS------------------TSAKYAPYAVKAGVVVVDNTSYFRQ 100 (366)
T ss_dssp HH------------------HHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred hH------------------hHHHHHHHHHHCCCEEEEcCCcccc
Confidence 21 1234566667788999999998644
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=70.70 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=60.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---cCC---CceEEEEcccCCcccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---IGH---PRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~---~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
|++++|.|.||+|++|+.+++.|.+++..+++++.+.... ...+... +.. ..+.+ .+ +....++|+||.
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~-g~~~~~~~~~~~~~v~~dl~~--~~--~~~~~~vDvVf~ 88 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKA-GQSMESVFPHLRAQKLPTLVS--VK--DADFSTVDAVFC 88 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTT-TSCHHHHCGGGTTSCCCCCBC--GG--GCCGGGCSEEEE
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhc-CCCHHHhCchhcCccccccee--cc--hhHhcCCCEEEE
Confidence 3457999999999999999999999874577777653211 1111111 110 01111 11 223347999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
|.+... +...+..+ +.|+++|-.|+.+-
T Consensus 89 atp~~~------------------s~~~a~~~-~aG~~VId~sa~~R 116 (359)
T 1xyg_A 89 CLPHGT------------------TQEIIKEL-PTALKIVDLSADFR 116 (359)
T ss_dssp CCCTTT------------------HHHHHHTS-CTTCEEEECSSTTT
T ss_pred cCCchh------------------HHHHHHHH-hCCCEEEECCcccc
Confidence 986432 23456666 77889999998753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=73.21 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=51.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
++++|+|+|+ |++|+.+++.|.+.+.++|++++|+. +....+....++..+.+|+.+. .+.++|+|||++
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~----~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t 96 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTL----ANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI 96 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSH----HHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCH----HHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence 4678999997 99999999999998327899999843 2222221112466777887764 234799999998
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
+.
T Consensus 97 p~ 98 (467)
T 2axq_A 97 PY 98 (467)
T ss_dssp CG
T ss_pred ch
Confidence 64
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=70.31 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=62.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe--cCCCCCccchhhhcCC----------CceEEEEcccCCc-ccC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD--NYFTGSKDNLKKWIGH----------PRFELIRHDVTEP-LLI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~--r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~-~~~ 93 (343)
|++++|.|.||||++|+.|++.|.++...++..+. ++..+. .+...... ....+...| .. .+.
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk--~~~~~~~~~~~~~~p~~~~~~~v~~~~--~~~~~~ 92 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGK--KYKDAASWKQTETLPETEQDIVVQECK--PEGNFL 92 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTS--BHHHHCCCCCSSCCCHHHHTCBCEESS--SCTTGG
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCC--CHHHhcccccccccccccccceEEeCc--hhhhcc
Confidence 45679999999999999999988887645676553 322221 12211110 122232222 22 356
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
++|+||.|.+.. ....++..+.+.|+++|=.|+.+-+
T Consensus 93 ~~Dvvf~alp~~------------------~s~~~~~~~~~~G~~VIDlSa~fR~ 129 (381)
T 3hsk_A 93 ECDVVFSGLDAD------------------VAGDIEKSFVEAGLAVVSNAKNYRR 129 (381)
T ss_dssp GCSEEEECCCHH------------------HHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred cCCEEEECCChh------------------HHHHHHHHHHhCCCEEEEcCCcccC
Confidence 899999987421 1234666667888999999998654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.6e-05 Score=61.95 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=52.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a~ 103 (343)
|+|+|+|+ |.+|+++++.|.++| ++|++++++ .+....+....++.++.+|.+++. +.++|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~~----~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRK-YGVVIINKD----RELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTT-CCEEEEESC----HHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECC----HHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 78999995 999999999999999 999999873 222322222236788999998762 457999997663
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=63.21 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~a 102 (343)
.|||.|+|+ |.+|..++..|...|..+|+++++..........++.. ....++.. .|. .++.++|+||.++
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a~ 78 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTS 78 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEcC
Confidence 479999998 99999999999999933888888753221111111111 11233333 454 4678999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS 144 (343)
|... .......+....|......+.+.+.+... .+|.+.|
T Consensus 79 g~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 79 GAPR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 7432 11222345567888888999999988765 3444444
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-05 Score=65.50 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=61.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcC--CCeEEEEec-CCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVADN-YFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g--~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
+|+|.|.||+|++|+.+++.|.+++ ..+++++.. ...+..-. +....+.+...| .....++|+||.|.+..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~----~~~~~i~~~~~~--~~~~~~vDvVf~a~g~~ 76 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR----FNGKTVRVQNVE--EFDWSQVHIALFSAGGE 76 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE----ETTEEEEEEEGG--GCCGGGCSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee----ecCceeEEecCC--hHHhcCCCEEEECCCch
Confidence 5899999999999999999999983 256666652 11111111 111233343333 23445799999987521
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.....+..+.+.|+++|-.|+.+-
T Consensus 77 ------------------~s~~~a~~~~~~G~~vId~s~~~R 100 (336)
T 2r00_A 77 ------------------LSAKWAPIAAEAGVVVIDNTSHFR 100 (336)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEECSSTTT
T ss_pred ------------------HHHHHHHHHHHcCCEEEEcCCccc
Confidence 134566677788899999998753
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=62.90 Aligned_cols=112 Identities=18% Similarity=0.088 Sum_probs=75.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CC-CeEEEEecCCCCCccchhhhcCCC-ceEEEE--cccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EK-NEVIVADNYFTGSKDNLKKWIGHP-RFELIR--HDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~--~d~~~~~~~~~d~vi~~a~~ 104 (343)
|||.|+||+|.+|..++..|..+ +. .+++++++.. .......++.... ..++.. ++-...++.++|+||.++|.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 78999999999999999999876 42 4788888753 1111222222221 223321 11123367899999999984
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
. .....+..+++..|..-...+++.+.+... .++.+|-
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3 223345678889999999999999988764 5666553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00022 Score=61.76 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=75.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCC-----CceEEE-EcccCCcccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGH-----PRFELI-RHDVTEPLLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~d~~~~~~~~~d~vi 99 (343)
|..|||.|+| +|.+|..++..|...+ . +|+++++..........++... ...++. ..| ..++.++|+||
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~-~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVI 78 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQ-LGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVI 78 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCC-CceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEE
Confidence 4568999999 5999999999999998 6 8999988543211111111110 123333 233 24778999999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.++|... .......+.+..|......+++...+..- .++.+|
T Consensus 79 i~ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 79 VTAGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp ECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EcCCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9997432 22335567788899999999999988765 566654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0001 Score=64.00 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=73.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcC-----CCceEEE-EcccCCcccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIG-----HPRFELI-RHDVTEPLLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~d~~~~~~~~~d~vi 99 (343)
|..|||.|+|+ |.+|..++..|...+ + +|+++++..........++.. ....++. ..|. .++.++|+||
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~-~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVI 80 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVI 80 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEE
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEE
Confidence 45689999997 999999999999999 7 999998854321111111110 0123333 2443 5778999999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
.++|... ....+..+.+..|..-...+++...+..- .++.+|-
T Consensus 81 iaag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 81 VTAGVPR--KPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp ECCSCCC--C-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EccCcCC--CCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 9997432 22234456778899999999999988765 5666553
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00027 Score=61.35 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
+.|||.|+|+ |++|..++..|...+ . +|++++...........++.+. ..+++...| ..++.++|+||.+
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~-~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~ 81 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVT 81 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEc
Confidence 3589999998 999999999999998 5 8999988643222112222111 234444322 3467899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEE
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT 142 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~ 142 (343)
++... .......+....|+.....+++.+.+..- .+|.+
T Consensus 82 ~g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 82 AGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 97432 22234456778899999999999988754 45543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=63.98 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=61.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcC--CCeEEEEe-cCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVAD-NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g--~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
+++|.|.||||++|+.|++.|.++. ..++..+. +...+..-. + .+.+..-.++....+.++|+||.|.+..
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~----~--~~~~~~~~~~~~~~~~~~Dvvf~a~~~~ 74 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA----F--RGQEIEVEDAETADPSGLDIALFSAGSA 74 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE----E--TTEEEEEEETTTSCCTTCSEEEECSCHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee----e--cCCceEEEeCCHHHhccCCEEEECCChH
Confidence 5799999999999999999988884 12455553 222222111 1 1223333334444556899999988521
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.....+..+.+.|+++|=.|+.+-+
T Consensus 75 ------------------~s~~~a~~~~~~G~~vID~Sa~~R~ 99 (344)
T 3tz6_A 75 ------------------MSKVQAPRFAAAGVTVIDNSSAWRK 99 (344)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred ------------------HHHHHHHHHHhCCCEEEECCCcccc
Confidence 1234566667788899999987644
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.76 E-value=8e-05 Score=64.84 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=62.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhh----hcCCCceEEEEc-ccCCccc-CCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKK----WIGHPRFELIRH-DVTEPLL-IEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~----~~~~~~~~~~~~-d~~~~~~-~~~d~vi~~ 101 (343)
++|.|+||||++|+.|++.|.+...+++..+..... ..-..+.+ +.....+.+... |. ..+ .++|+||.|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~--~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDI--SEFSPGVDVVFLA 82 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSG--GGTCTTCSEEEEC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCH--HHHhcCCCEEEEC
Confidence 799999999999999999999876467777754321 11111211 111113333332 22 233 689999988
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.+.. ....++..+.+.|+++|=+|+.+-
T Consensus 83 ~p~~------------------~s~~~~~~~~~~g~~vIDlSa~fR 110 (337)
T 3dr3_A 83 TAHE------------------VSHDLAPQFLEAGCVVFDLSGAFR 110 (337)
T ss_dssp SCHH------------------HHHHHHHHHHHTTCEEEECSSTTS
T ss_pred CChH------------------HHHHHHHHHHHCCCEEEEcCCccc
Confidence 7421 123466666788999999999864
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5.9e-05 Score=66.35 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec-CCCCCccchhhhcC------C----CceEEEEcccCCcccCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTGSKDNLKKWIG------H----PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~------~----~~~~~~~~d~~~~~~~~~d 96 (343)
++++|.|+||||++|+.|++.|.++...++..+.. +..+ ..+..... . ....+...| ...+.++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saG--k~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vD 81 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVG--KPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTT--SBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcC--CChhHhcccccccccccccccceEEeCC--HHHhcCCC
Confidence 45799999999999999999887776456666643 2211 11221110 0 122222222 22346899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
+||.|.+... ...++..+.+.|+++|=+|+.+-+
T Consensus 82 vvf~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpk_A 82 IIFSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTTT
T ss_pred EEEECCChHH------------------HHHHHHHHHHCCCEEEEcCCCccC
Confidence 9999875332 234566667788999999998654
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5.9e-05 Score=66.35 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec-CCCCCccchhhhcC------C----CceEEEEcccCCcccCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTGSKDNLKKWIG------H----PRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~------~----~~~~~~~~d~~~~~~~~~d 96 (343)
++++|.|+||||++|+.|++.|.++...++..+.. +..+ ..+..... . ....+...| ...+.++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saG--k~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vD 81 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVG--KPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTT--SBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcC--CChhHhcccccccccccccccceEEeCC--HHHhcCCC
Confidence 45799999999999999999887776456666643 2211 11221110 0 122222222 22346899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
+||.|.+... ...++..+.+.|+++|=+|+.+-+
T Consensus 82 vvf~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpl_A 82 IIFSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTTT
T ss_pred EEEECCChHH------------------HHHHHHHHHHCCCEEEEcCCCccC
Confidence 9999875332 234566667788999999998654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=57.32 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=52.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----c--cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----L--LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~--~~~~d~v 98 (343)
+.+++|+|+| .|.+|..+++.|.+. | ++|++++++. +...... ..++.++.+|..+. . +.++|+|
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~----~~~~~~~-~~g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIRE----EAAQQHR-SEGRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCH----HHHHHHH-HTTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCH----HHHHHHH-HCCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 3578999999 699999999999999 9 9999998742 2222221 23677788887664 1 4579999
Q ss_pred EEecC
Q 019309 99 YHLAC 103 (343)
Q Consensus 99 i~~a~ 103 (343)
|.+.+
T Consensus 110 i~~~~ 114 (183)
T 3c85_A 110 LLAMP 114 (183)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 98764
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=63.09 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=74.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCcc---chhhhc--CCCceEEEE-cccCCcccCCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKD---NLKKWI--GHPRFELIR-HDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~-~d~~~~~~~~~d~vi~~ 101 (343)
|||.|+|+ |.+|..++..|...+ + +|+++++....... .+.... -....++.. .| ..++.++|+||.+
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~-~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEEC
Confidence 78999998 999999999999998 6 89999885322110 011111 012233332 34 5577899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
+|... ....+..+++..|..-...+++.+.+.+- .++.+|-
T Consensus 77 ag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 77 AGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 97532 22345567788999999999999998864 5666653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=8.2e-05 Score=64.50 Aligned_cols=112 Identities=11% Similarity=0.114 Sum_probs=65.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
+.+|||.|+|+ |.+|+.++..|...+. .+++++++..........++.. ...+++...| ..++.++|+||.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEEC
Confidence 45689999996 9999999999999983 2899998742111100011111 1244555443 3467899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
||... ....+..+.+..|..-...+++.+.+..- .++.+|
T Consensus 84 ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 84 AGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 98432 22234456778899999999999988765 555554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.71 E-value=9e-05 Score=64.04 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=74.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCC-CCCccch-hhhcC-----CCceEEEE-cccCCcccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYF-TGSKDNL-KKWIG-----HPRFELIR-HDVTEPLLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~-~~~~~~~-~~~~~-----~~~~~~~~-~d~~~~~~~~~d~ 97 (343)
|..++|.|+|+ |.+|..++..|...| + +|+++++.. ....+.. .++.. ....++.. .| ..++.++|+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g-~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDv 81 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKE-LADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD--YADTADSDV 81 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC--GGGGTTCSE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC--HHHhCCCCE
Confidence 44679999996 999999999999999 7 999998852 1111111 11110 01222221 22 246779999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
||.++|... ....+..+++..|..-...+++.+.+.+- .++.+|-
T Consensus 82 VIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 82 VVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp EEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 999998532 22345567889999999999999988765 5666553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.3e-05 Score=56.95 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=53.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~ 100 (343)
.++++|+|+|+ |.+|+.+++.|.+.| ++|++++++. +...... ..++.++.+|.+++. ..++|+||-
T Consensus 5 ~~~~~viIiG~-G~~G~~la~~L~~~g-~~v~vid~~~----~~~~~~~-~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 5 DICNHALLVGY-GRVGSLLGEKLLASD-IPLVVIETSR----TRVDELR-ERGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCH----HHHHHHH-HTTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred cCCCCEEEECc-CHHHHHHHHHHHHCC-CCEEEEECCH----HHHHHHH-HcCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35678999995 999999999999999 9999999742 2222222 257889999998763 346899997
Q ss_pred ecC
Q 019309 101 LAC 103 (343)
Q Consensus 101 ~a~ 103 (343)
+.+
T Consensus 78 ~~~ 80 (140)
T 3fwz_A 78 TIP 80 (140)
T ss_dssp CCS
T ss_pred ECC
Confidence 763
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=62.04 Aligned_cols=170 Identities=13% Similarity=0.040 Sum_probs=98.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC------CeEEEEecCCCCCc-cc-hhhh--cCCCc-eEEEEcccCCcccCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVADNYFTGSK-DN-LKKW--IGHPR-FELIRHDVTEPLLIEV 95 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~-~~-~~~~--~~~~~-~~~~~~d~~~~~~~~~ 95 (343)
|..-||.|+||+|.||+.|+..|..... .++..++....... +. ..++ ...+. .....++-...++.++
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a 101 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV 101 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence 4456999999999999999998887652 16777775321100 10 0111 11121 2222222223467899
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCc---ccCCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSE---VYGDPLIHPQPETYWGNVNPIGV 169 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~---v~~~~~~~~~~e~~~~~~~~~~~ 169 (343)
|+||-+||.. ........+++..|..-...+.+...+.. ++++.+|-.. +|-. .... + ....+
T Consensus 102 dvVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~-----~~~~--~--g~~~~ 170 (345)
T 4h7p_A 102 AIAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL-----LKSA--Q--GKLNP 170 (345)
T ss_dssp SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHHT--T--TCSCG
T ss_pred CEEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH-----HHHc--c--CCCCc
Confidence 9999999854 23345667889999999999999988754 3566666431 1100 0000 0 01122
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCC
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~ 207 (343)
....+.+.+-.-++-...+++.+++..-+.-..|.|..
T Consensus 171 r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 171 RHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred ceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 23344444444455555556668777777766677765
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00026 Score=60.42 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=74.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~a 102 (343)
|||.|+|+ |.||+.++..|..++. .++..++...........++.+ ....++.. .|. .++.++|+||-.|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~--~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH--HHhCCCCEEEEec
Confidence 89999995 9999999999999884 4788888642111111111111 11223332 232 3577899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
|... ....+..+.+..|..-...+++.+.++.- .++.+|-
T Consensus 78 G~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 8542 33456778899999999999999998875 4555554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00039 Score=60.47 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=72.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC----CceEEEEcccCCcccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH----PRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
+++|||.|+|| |.+|..++..|...+. .+++++++..........++... ..+++.. | ...++.++|+||.+
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~ 83 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEc
Confidence 35589999998 9999999999998873 27888887421111111111111 2444443 3 24457899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
++... .......+....|+.....+++.+.+..- .+|.+|
T Consensus 84 ag~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 84 AGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 97532 22334456778899999999999888764 566554
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00025 Score=61.74 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=56.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe---EEEE-ecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE---VIVA-DNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~---V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
|||.|.||+|++|+.|++.|.+++ +. ++.+ .+...+. .+. +....+.+...|.. .. ++|+||.|.|..
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~-~~~~~l~~~~s~~~~g~--~l~--~~g~~i~v~~~~~~--~~-~~DvV~~a~g~~ 72 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARN-FPLSELRLYASPRSAGV--RLA--FRGEEIPVEPLPEG--PL-PVDLVLASAGGG 72 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT-CCCSCCEEEECGGGSSC--EEE--ETTEEEEEEECCSS--CC-CCSEEEECSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCcEEEEEeeccccCCC--EEE--EcCceEEEEeCChh--hc-CCCEEEECCCcc
Confidence 689999999999999999999776 43 3322 1111111 111 11123444444432 34 899999988521
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
.....+....+.|+++|-.|+.+-
T Consensus 73 ------------------~s~~~a~~~~~~G~~vId~s~~~R 96 (331)
T 2yv3_A 73 ------------------ISRAKALVWAEGGALVVDNSSAWR 96 (331)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEECSSSST
T ss_pred ------------------chHHHHHHHHHCCCEEEECCCccc
Confidence 123455566677889999998853
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00055 Score=59.05 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=71.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|||.|+|+ |.+|+.++..|...+. .+|+++++..........++.. ....++...| ...++.++|+||.++|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~-~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN-DYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES-SSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC-CHHHhCCCCEEEECCC
Confidence 79999996 9999999999999983 2899998854321111111110 1123333222 2346779999999997
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
... ....+..+.+..|..-...+++...+..- .++.+|-
T Consensus 79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 432 22334567889999999999999988764 5665553
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=61.38 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=70.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
.++|||.|+|| |.+|..++..|...+. .+++++++..........++.. ...+++.. | ...++.++|+||.+
T Consensus 3 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ 79 (318)
T 1ez4_A 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVIT 79 (318)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEC
Confidence 35589999998 9999999999999883 2799888742111111111111 12444443 3 24467899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
++... .......+.+..|+.....+++.+.+.+- .+|.+|
T Consensus 80 ag~~~--~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 80 AGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp CCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 97532 12223345678899999999999988865 566554
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=61.10 Aligned_cols=95 Identities=22% Similarity=0.400 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCC-ccchhhhcCC-CceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGS-KDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~-~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|.+|||.|+|++|.+|+.+++.+.+....++.++ +|..... .......... .++.+ ..|+. ..+.++|+||.+..
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v-~~dl~-~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL-TDDIE-RVCAEADYLIDFTL 82 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC-BCCHH-HHHHHCSEEEECSC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCcee-cCCHH-HHhcCCCEEEEcCC
Confidence 3458999999999999999999998764676664 5532111 0111111110 12211 12221 12336899999862
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
+ ..+...++.|.++|+++|.
T Consensus 83 p------------------~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 83 P------------------EGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp H------------------HHHHHHHHHHHHHTCEEEE
T ss_pred H------------------HHHHHHHHHHHHcCCCEEE
Confidence 1 1234677888899988775
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00041 Score=60.26 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=74.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhc---CCC-ceEEE-EcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWI---GHP-RFELI-RHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~---~~~-~~~~~-~~d~~~~~~~~~d~vi~~ 101 (343)
..|||.|+|+ |.+|..++..|+..|. .+++++++..........++. ... ...++ ..|.. ++.++|+||.+
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~--~~~~aDiVvi~ 94 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS--VTANSKLVIIT 94 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG--GGTTEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH--HhCCCCEEEEc
Confidence 4589999997 9999999999999983 289998874211111111111 011 12233 33432 57899999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
+|... ....+..+.+..|..-...+++.+.++.- .++.+|-
T Consensus 95 aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 95 AGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 98532 23345567889999999999999988854 5666553
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=56.48 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=70.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEecCCCCCccchh-hhcC-----CCceEEEE-cccCCcccCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVADNYFTGSKDNLK-KWIG-----HPRFELIR-HDVTEPLLIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~-~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~ 100 (343)
|||.|+|+ |.+|..++..|... + ++|+++++...... ... .+.. ....++.. .|.. .+.++|+||.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-~~V~l~D~~~~~~~-~~~~~l~~~~~~~~~~~~i~~t~d~~--~l~~aDvVii 75 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGIPQ-GKALDMYESGPVGLFDTKVTGSNDYA--DTANSDIVII 75 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSHHH-HHHHHHHTTHHHHTCCCEEEEESCGG--GGTTCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhHHH-HHHHhHHhhhhcccCCcEEEECCCHH--HHCCCCEEEE
Confidence 68999998 99999999999986 6 89999998643211 111 1111 01222222 3442 3778999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
+++.. ........+++..|......+++.+.+... .+|.+|
T Consensus 76 av~~p--~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 76 TAGLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred eCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 98632 122233456777898888899988887754 555553
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0011 Score=57.57 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=69.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~ 101 (343)
..|||.|+|| |.+|..++..|...|..+|++++++..........+.. ....++.. .|. .++.++|+||.+
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~Vi~a 79 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY--DDLAGADVVIVT 79 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG--GGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEe
Confidence 3579999998 99999999999999932888888753221111111110 11223332 454 467899999999
Q ss_pred cCCCCccccccC-----hHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~-----~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
+|... ..... ..+....|......+.+...+..- .+|.+|
T Consensus 80 ~g~p~--k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 80 AGFTK--APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp CSCSS--CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCCCC--CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 97431 11111 345567788888888888877644 455443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00089 Score=58.02 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccch---hhhcC--CCceEEEEcccCCcccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNL---KKWIG--HPRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~---~~~~~--~~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
|+.|||.|+|+ |.+|..++..|...+. .+|.++++......... ..... ...+++.. | ...++.++|+||.
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~-~~~a~~~aDvVvi 80 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G-EYSDCHDADLVVI 80 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C-CGGGGTTCSEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C-CHHHhCCCCEEEE
Confidence 35589999998 9999999999998873 37888886421111101 11111 12344443 3 2445789999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
++|... ............|......+++...+..- .+|.+|
T Consensus 81 ~ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 81 CAGAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 997532 22334456778899999999999988754 455533
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00059 Score=58.80 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=65.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|||.|+|+ |.+|..++..|...| + +|+++++...........+.. ....++...| ..++.++|+||.+++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g-~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~ 76 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRG-SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAG 76 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence 68999997 999999999999999 7 899998853211111111111 0123333333 245779999999986
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
... .......+....|......+++.+.+... .+|.+|
T Consensus 77 ~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 77 ANQ--KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CCC--CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 432 11223345567888888888888887644 444433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00052 Score=59.43 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=73.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccc---hhhhcC-CCceEEE-EcccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDN---LKKWIG-HPRFELI-RHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~~-~~~~~~~-~~d~~~~~~~~~d~vi~~a 102 (343)
.|||.|+|+ |.+|..++..|...|. .+|+++++........ +.+... ....++. ..|.. .+.++|+||-++
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIita 97 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVITA 97 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEeC
Confidence 489999998 9999999999999983 3899998743211111 111101 0122232 34553 378999999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
|... ....+..+.+..|..-...+++...+.+- .++.+|
T Consensus 98 G~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 98 GARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp SCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 8532 22334456778899989999999988754 566555
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0013 Score=56.71 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=73.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|||.|+|+ |.+|..++..|...+. .+++++++..........++.. ...+++...| ..++.++|+||.+++.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~--~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS--YGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC--HHHhCCCCEEEECCCC
Confidence 78999998 9999999999998873 4799888742111111111111 1244444432 4567899999999975
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. .......+....|......+++.+.+.+- .+|.+|
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 78 AQ--RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 32 22334456778899999999999988754 566554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00097 Score=55.08 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=50.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~ 100 (343)
..+++|+|+|+ |.+|+.+++.|.+.| + |++++++ .+...... .++.++.+|.+++. +.++|.||.
T Consensus 7 ~~~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~----~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (234)
T 2aef_A 7 AKSRHVVICGW-SESTLECLRELRGSE-V-FVLAEDE----NVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIV 77 (234)
T ss_dssp ---CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCG----GGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECC----HHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence 34689999996 999999999999999 8 9988863 22222222 46889999998763 457999998
Q ss_pred ec
Q 019309 101 LA 102 (343)
Q Consensus 101 ~a 102 (343)
+.
T Consensus 78 ~~ 79 (234)
T 2aef_A 78 DL 79 (234)
T ss_dssp CC
T ss_pred cC
Confidence 76
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00099 Score=58.09 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=67.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhh------cC-CCceEEEEcccCCcccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKW------IG-HPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~------~~-~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
+.|||.|+|| |.+|..++..|...| + +|+++++...........+ +. ..++.. ..|+. .++.++|+||
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g-~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~~-ea~~~aDiVi 83 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRE-LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSYE-AALTGADCVI 83 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSHH-HHHTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCHH-HHhCCCCEEE
Confidence 4589999997 999999999999999 6 8999988542211101111 11 112222 23432 2577899999
Q ss_pred EecCCCCcccccc-----ChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 100 HLACPASPIFYKY-----NPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 100 ~~a~~~~~~~~~~-----~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
.++|... .... ........|......+++...+..-
T Consensus 84 ~a~g~p~--~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p 124 (331)
T 1pzg_A 84 VTAGLTK--VPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124 (331)
T ss_dssp ECCSCSS--CTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred EccCCCC--CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9997432 1111 3445577888888889888888754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00061 Score=54.66 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|+|+||+|.||..+++.+...| .+|++++|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~ 72 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGS 72 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCC
Confidence 367899999999999999999999999 899999874
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=54.38 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=50.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
|||.|.|++|.+|+.+++.+.+...+++.++.... .|+.+....++|+||.+..+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------------------~dl~~~~~~~~DvvIDfT~p~a--- 57 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------------------DPLSLLTDGNTEVVIDFTHPDV--- 57 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------------------CCTHHHHHTTCCEEEECSCTTT---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------------------CCHHHHhccCCcEEEEccChHH---
Confidence 68999999999999999999876328887665421 0111111125788888774322
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+...++.|.++|+++|.-++
T Consensus 58 ---------------~~~~~~~a~~~g~~~VigTT 77 (245)
T 1p9l_A 58 ---------------VMGNLEFLIDNGIHAVVGTT 77 (245)
T ss_dssp ---------------HHHHHHHHHHTTCEEEECCC
T ss_pred ---------------HHHHHHHHHHcCCCEEEcCC
Confidence 34567777788876655433
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0021 Score=55.77 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=68.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhh------cC-CCceEEEEcccCCcccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKW------IG-HPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~------~~-~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
+.|+|.|+|+ |.+|..++..|...| + +|+++++............ .. ..++.. ..|+ .++.++|+||
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g-~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~--~a~~~aDiVi 77 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDN-LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY--ADISGSDVVI 77 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH--HHhCCCCEEE
Confidence 4589999997 999999999999999 6 8999988542211100000 00 112222 1344 4567899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
.+++... .......+....|......+++...+... .+|.+|.
T Consensus 78 ~avg~p~--~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 78 ITASIPG--RPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp ECCCCSS--CCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EeCCCCC--CCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9997432 11223334456677777777777776543 4555554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0022 Score=55.83 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=69.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCcc---chhhh---c-CCCceEEEEcccCCcccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKD---NLKKW---I-GHPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~---~~~~~---~-~~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
+.|+|.|+|| |.+|..++..|...| + +|++++++...... .+... . ...++... .|+ .++.++|+||
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g-~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~VI 87 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKD-LGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY--EYLQNSDVVI 87 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH--HHHCCCCEEE
Confidence 4579999997 999999999999999 6 89999885432211 11111 0 11223322 454 4678999999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.+++... .......+....|......+++...+..- .+|.+|
T Consensus 88 ~avg~p~--k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 88 ITAGVPR--KPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp ECCSCCC--CTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EcCCCCC--CCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9987432 11112234556788888888888777643 455444
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00085 Score=56.82 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=57.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCC-CccchhhhcC--CCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTG-SKDNLKKWIG--HPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~-~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
++.+||.|.|++|.+|+.+++.+.+....++.++ +|.... .......+.. ..++.+. .|+. ..+.++|+||.+.
T Consensus 19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~-~dl~-~ll~~aDVvIDFT 96 (288)
T 3ijp_A 19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRIT-DDPE-SAFSNTEGILDFS 96 (288)
T ss_dssp --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCB-SCHH-HHTTSCSEEEECS
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceee-CCHH-HHhcCCCEEEEcC
Confidence 3557999999999999999999998764666655 443211 0111111111 1223221 2332 2344799999886
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
.+ ..+...+..|.++|+.+|.-++
T Consensus 97 ~p------------------~a~~~~~~~~l~~Gv~vViGTT 120 (288)
T 3ijp_A 97 QP------------------QASVLYANYAAQKSLIHIIGTT 120 (288)
T ss_dssp CH------------------HHHHHHHHHHHHHTCEEEECCC
T ss_pred CH------------------HHHHHHHHHHHHcCCCEEEECC
Confidence 21 1234577888999988775443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0004 Score=58.81 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=47.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-CceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
..+++++|+|+ |.+|+.++..|.+.| .+|+++.|+... .+.+...+.. ..+.. .|+.+....++|+||++++..
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~~-~~~la~~~~~~~~~~~--~~~~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVSR-AEELAKLFAHTGSIQA--LSMDELEGHEFDLIINATSSG 191 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHH-HHHHHHHTGGGSSEEE--CCSGGGTTCCCSEEEECCSCG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHHH-HHHHHHHhhccCCeeE--ecHHHhccCCCCEEEECCCCC
Confidence 36789999998 679999999999999 999999885321 1222222111 12222 232111004799999999743
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.002 Score=55.82 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=68.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhh---hcC-CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKK---WIG-HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|+|.|+|+ |.+|..++..|...| + +|+++++........... ... ....++...| ...+.++|+||.+++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~ 76 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAG 76 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccC
Confidence 68999997 999999999999999 7 899998853211110100 000 0122333233 235678999999986
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
... .......+....|......+++...+... .+|.+|
T Consensus 77 ~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 77 VPQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp CCC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 432 11223456677788888888888877643 455443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=55.75 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccc-hhhh---cCC--CceEEEEcccCCcccCCCCEEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDN-LKKW---IGH--PRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~-~~~~---~~~--~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
+.|||.|+|+ |.+|..++..|...+. .+|+++++... ..+. ..++ ... ..+++...+ ..++.++|+||.
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~~~--~~al~~aDvVii 80 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDFNHGKVFAPKPVDIWHGD--YDDCRDADLVVI 80 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHHHHHTTSSSSCCEEEECC--GGGTTTCSEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhHHHHhhhcCCCeEEEcCc--HHHhCCCCEEEE
Confidence 3479999998 9999999999988873 47999988532 1111 1111 111 134444322 245779999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEE
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT 142 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~ 142 (343)
+++..... .....+.+..|......+++.+.+..- .++.+
T Consensus 81 a~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~ 122 (316)
T 1ldn_A 81 CAGANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (316)
T ss_dssp CCSCCCCT--TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred cCCCCCCC--CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEe
Confidence 99754321 223345567888888888888887754 44443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=54.95 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=47.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|+|+ |.+|+.+++.|.+.| ++|++++|..... +.+...+ +......+-....+.++|+||.+.+.
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~g-~~v~v~~r~~~~~-~~~a~~~---~~~~~~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYPQ-YKVTVAGRNIDHV-RAFAEKY---EYEYVLINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTTT-CEEEEEESCHHHH-HHHHHHH---TCEEEECSCHHHHHHTCSEEEECSCC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEcCCHHHH-HHHHHHh---CCceEeecCHHHHhcCCCEEEEeCCC
Confidence 4899999995 999999999999999 7799988843221 1122222 23332222222334579999998864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.008 Score=51.56 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=71.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhh--cCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
+||.|+|| |.+|..++..|+..| . +|+++++... ......++ ....+++.. .|+ .++.++|+||.++|..
T Consensus 15 ~kV~ViGa-G~vG~~~a~~l~~~g-~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag~~ 88 (303)
T 2i6t_A 15 NKITVVGG-GELGIACTLAISAKG-IADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVNSL 88 (303)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCCC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCCCC
Confidence 79999995 999999999999999 6 8999988643 22111111 122355553 554 4578999999999863
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 144 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS 144 (343)
.......+....|..-...+++.+.+..- .+|.+|-
T Consensus 89 ---~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 89 ---GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 22334556778899888999998887654 4555543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00088 Score=54.59 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=45.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
++|+|.|+| +|.+|+.+++.|.+.| ++|++++|+. +....... .++... ++. ..+.++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g-~~V~~~~r~~----~~~~~~~~-~g~~~~--~~~-~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSG-FKVVVGSRNP----KRTARLFP-SAAQVT--FQE-EAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESSH----HHHHHHSB-TTSEEE--EHH-HHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHH-cCCcee--cHH-HHHhCCCEEEECCC
Confidence 457999999 8999999999999999 8999998842 22222211 244443 322 23457999998874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0017 Score=58.39 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~ 101 (343)
.+|+|+|+|. |-+|+.+++.|.+.| +.|++++++ .+..... ...++.++.+|.+++. +.++|+||-+
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g-~~vvvId~d----~~~v~~~-~~~g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSG-VKMVVLDHD----PDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEECC----HHHHHHH-HHTTCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC-CCEEEEECC----HHHHHHH-HhCCCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 3578999995 999999999999999 999999874 2222222 2247889999999873 4479999977
Q ss_pred cC
Q 019309 102 AC 103 (343)
Q Consensus 102 a~ 103 (343)
.+
T Consensus 76 ~~ 77 (413)
T 3l9w_A 76 ID 77 (413)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=55.23 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC------------------Cccchhhhc----CCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG------------------SKDNLKKWI----GHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------------------~~~~~~~~~----~~~~~~~~~~ 85 (343)
.+++|+|+| .|-+|+++++.|.+.|..+++++++..-. +.+.+.+.+ ..-.++.+..
T Consensus 30 ~~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 468999999 58899999999999995589998875311 111111111 1123455555
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
++.+. .+.++|+||.+... ...-..+.++|++.++.+|+.+....
T Consensus 109 ~~~~~~~~~~~~~~DvVi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~g~ 157 (249)
T 1jw9_B 109 LLDDAELAALIAEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKVPLVSGAAIRM 157 (249)
T ss_dssp CCCHHHHHHHHHTSSEEEECCSS-----------------HHHHHHHHHHHHHHTCCEEEEEEEBT
T ss_pred cCCHhHHHHHHhCCCEEEEeCCC-----------------HHHHHHHHHHHHHcCCCEEEeeeccc
Confidence 55432 23479999988631 11123567788888888888765443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0051 Score=53.30 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCcc-ch--hhhcC-CCceEEEEc-ccCCcccCCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKD-NL--KKWIG-HPRFELIRH-DVTEPLLIEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~-~~--~~~~~-~~~~~~~~~-d~~~~~~~~~d~vi~~ 101 (343)
.|+|.|+|+ |.+|..++..|...| + +|++++|....... .. ..... .....+... | ...+.++|+||-+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g-~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~aD~Vii~ 82 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRG-IAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD--PEICRDADMVVIT 82 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC--GGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC--HHHhCCCCEEEEC
Confidence 489999997 999999999999999 7 99999885311110 01 11110 012333322 2 2356689999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
++... ....+..+....|......+++...+.+.
T Consensus 83 v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~ 116 (319)
T 1lld_A 83 AGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAP 116 (319)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 86432 22234556778888888888888877644
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0063 Score=53.53 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=71.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC-e---EEEEecCCCCCcc----chhhhcCC--C---ceEEEEcccCCcccCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN-E---VIVADNYFTGSKD----NLKKWIGH--P---RFELIRHDVTEPLLIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~-~---V~~~~r~~~~~~~----~~~~~~~~--~---~~~~~~~d~~~~~~~~ 94 (343)
..+||.|+||+|.||.+++-.|...+.. + +.+.....+...+ ...++... + .+.+. +-...++.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~~~y~~~~d 108 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--IDPYEVFED 108 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--SCHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--cCCHHHhCC
Confidence 4579999999999999999999998742 2 5554332211111 11111111 1 22221 111236778
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEeC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-G--ARILLTST 144 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~--~r~i~~SS 144 (343)
+|+||-+||.. .....+..+++..|..-...+.....+. + +.++.+|-
T Consensus 109 aDvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 109 VDWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999998743 2334566788899999999999999875 3 36777664
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=53.83 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=31.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|+|+||+|++|+.+++.|.+.| ++|++++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 689999999999999999999999 999999985
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00053 Score=56.14 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=45.5
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEE-EecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-ADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
++|+.|+|.|+| +|.+|..+++.|.+.| ++|++ ++|+... .+.+.... ++.....+ ...+.++|+||.+.
T Consensus 19 ~~m~mmkI~IIG-~G~mG~~la~~l~~~g-~~V~~v~~r~~~~-~~~l~~~~---g~~~~~~~--~~~~~~aDvVilav 89 (220)
T 4huj_A 19 YFQSMTTYAIIG-AGAIGSALAERFTAAQ-IPAIIANSRGPAS-LSSVTDRF---GASVKAVE--LKDALQADVVILAV 89 (220)
T ss_dssp TGGGSCCEEEEE-CHHHHHHHHHHHHHTT-CCEEEECTTCGGG-GHHHHHHH---TTTEEECC--HHHHTTSSEEEEES
T ss_pred hhhcCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEECCCHHH-HHHHHHHh---CCCcccCh--HHHHhcCCEEEEeC
Confidence 345568999999 8999999999999999 89988 6764322 12222111 12222211 12346799999876
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=55.55 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.|+|.|+|+||.+|+.+++.|.+.| ++|++++|+.. ....... .++.. .+. ...+.++|+||.+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~----~~~~~~~-~g~~~--~~~-~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPE----GRDRLQG-MGIPL--TDG-DGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHH----HHHHHHH-TTCCC--CCS-SGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHH----HHHHHHh-cCCCc--CCH-HHHhcCCCEEEEcC
Confidence 4799999999999999999999999 99999987421 1111111 12222 122 22445799999876
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0022 Score=55.94 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|-||..+++.+...| .+|++++|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~ 179 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGS 179 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCC
Confidence 367899999999999999999999999 899999874
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0079 Score=51.78 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=72.1
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEEE-cccCCcccCCCCEEEEecCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~d~vi~~a~~ 104 (343)
||.|+|| |.+|..++..|...+..+|+++++..........++.. ....++.. .|. .++.++|+||..++.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence 5899998 99999999999988832699998853222111111111 12333443 453 467899999999875
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. .......+....|..-...+++.+.+..- .+|.+|
T Consensus 78 ~~--k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 78 GR--KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp CC--CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 32 22334556788899999999999887654 566654
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=55.86 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=52.0
Q ss_pred CEEEEEcCchhHHHHHHH-HHHhcC--CCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVD-KLMENE--KNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~-~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~~~ 105 (343)
|+|.|+||||++|+.|++ .|.++. ..++..+.-...+.. +... ......+. ++.+ ..+.++|+||.|.+..
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~-~~~~~~~~--~~~~~~~~~~~Dvvf~a~~~~ 75 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--APNF-GKDAGMLH--DAFDIESLKQLDAVITCQGGS 75 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB--CCCS-SSCCCBCE--ETTCHHHHTTCSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcC--HHHh-CCCceEEE--ecCChhHhccCCEEEECCChH
Confidence 689999999999999999 555555 125555532111111 1111 11112222 3322 2356899999988521
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 145 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~ 145 (343)
. ...++..+.+.|+ ++|=.||.
T Consensus 76 ~------------------s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 76 Y------------------TEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp H------------------HHHHHHHHHHTTCCCEEEECSST
T ss_pred H------------------HHHHHHHHHHCCCCEEEEeCCch
Confidence 1 2345555667786 45555554
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0024 Score=56.39 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCEEEEEcCchhHHHHHHH-HHHhcCC--CeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVD-KLMENEK--NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~-~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~ 103 (343)
.+++|.|+||||++|+.|++ .|.++.. .++..+.-...+.. +..+ ......+. ++.+ ..+.++|+||.|.+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~-~~~~~~v~--~~~~~~~~~~vDvvf~a~~ 77 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGK--APSF-AKNETTLK--DATSIDDLKKCDVIITCQG 77 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSB--CCTT-CCSCCBCE--ETTCHHHHHTCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCC--HHHc-CCCceEEE--eCCChhHhcCCCEEEECCC
Confidence 45899999999999999999 5555551 25555532111111 1111 11112222 3322 23458999999885
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCc
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSE 146 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~ 146 (343)
.. ....++..+.+.|+ ++|=.|+.+
T Consensus 78 ~~------------------~s~~~~~~~~~~G~k~~VID~ss~f 104 (377)
T 3uw3_A 78 GD------------------YTNDVFPKLRAAGWNGYWIDAASSL 104 (377)
T ss_dssp HH------------------HHHHHHHHHHHTTCCSEEEECSSTT
T ss_pred hH------------------HHHHHHHHHHHCCCCEEEEeCCccc
Confidence 21 12345556667787 455555543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0015 Score=55.28 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC-CceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+++++|+|+ |.+|+.++..|.+.| .+|+++.|+... .+.+...+.. ..+.. .|+.+....++|+||++.+.
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~R~~~~-a~~l~~~~~~~~~~~~--~~~~~~~~~~~DivIn~t~~ 190 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSK-TKELAERFQPYGNIQA--VSMDSIPLQTYDLVINATSA 190 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHH-HHHHHHHHGGGSCEEE--EEGGGCCCSCCSEEEECCCC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHHHHHccccCCeEE--eeHHHhccCCCCEEEECCCC
Confidence 5789999997 779999999999999 999999985322 1222222111 12322 23321100379999999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.003 Score=51.43 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=56.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
.+++|||+| .|-+|...++.|++.| .+|++++.. ..+.+..+....+++++..++.+..+.++|.||-+.
T Consensus 30 ~gk~VLVVG-gG~va~~ka~~Ll~~G-A~VtVvap~---~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT 99 (223)
T 3dfz_A 30 KGRSVLVVG-GGTIATRRIKGFLQEG-AAITVVAPT---VSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT 99 (223)
T ss_dssp TTCCEEEEC-CSHHHHHHHHHHGGGC-CCEEEECSS---CCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEECCC---CCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC
Confidence 789999999 5899999999999999 999999863 233444444456788888888888888999999554
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0048 Score=51.03 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=40.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
++|||.|+|+ |.+|+.+++.+.+++ ++++++ +|.... ..++.+ ..|+.+ .+ ++|++|+++.
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~-~eLva~~d~~~~~----------~~gv~v-~~dl~~-l~-~~DVvIDft~ 63 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKG-HEIVGVIENTPKA----------TTPYQQ-YQHIAD-VK-GADVAIDFSN 63 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECSSCC------------CCSCB-CSCTTT-CT-TCSEEEECSC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCC-CEEEEEEecCccc----------cCCCce-eCCHHH-Hh-CCCEEEEeCC
Confidence 3589999999 999999999999998 476664 443210 012221 123332 23 8999998874
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.014 Score=52.76 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=60.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC---eEEEEecCCCCCccchhhhcCCCceEEEEcccCCc--------ccCCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP--------LLIEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~d 96 (343)
-+++|+|+| .|-||+.++..|.++... .|++.+...... .+.+.. ++++...+++.. .+.+.|
T Consensus 12 ~~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~---g~~~~~~~Vdadnv~~~l~aLl~~~D 85 (480)
T 2ph5_A 12 FKNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQY---GVSFKLQQITPQNYLEVIGSTLEEND 85 (480)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHH---TCEEEECCCCTTTHHHHTGGGCCTTC
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhc---CCceeEEeccchhHHHHHHHHhcCCC
Confidence 457899999 999999999999998644 588877643331 222222 345554444322 333569
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
+|||++-+.. ...++++|.++|+.+|=++
T Consensus 86 vVIN~s~~~~------------------~l~Im~acleaGv~YlDTa 114 (480)
T 2ph5_A 86 FLIDVSIGIS------------------SLALIILCNQKGALYINAA 114 (480)
T ss_dssp EEEECCSSSC------------------HHHHHHHHHHHTCEEEESS
T ss_pred EEEECCcccc------------------CHHHHHHHHHcCCCEEECC
Confidence 9998763221 2469999999998777544
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0087 Score=51.59 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=66.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchh-hhc-----CCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLK-KWI-----GHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~-~~~-----~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|.|+| +|.+|..++..|.+.|. ++|++++|..... +.+. ... ....++....|. ..+.++|+||.++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKV-KADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTL 77 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEec
Confidence 7999999 89999999999999984 5899998853211 1111 110 011244433454 4567899999988
Q ss_pred CCCCccc--cccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEE
Q 019309 103 CPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT 142 (343)
Q Consensus 103 ~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~ 142 (343)
+...... ......+....|+.....+++...+... .+|.+
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~ 121 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6422000 1112223456788778888888877544 44443
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.016 Score=50.92 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.|+ |-+|++++..|...|-.+++++++..-.... .+....+.-.++.+..
T Consensus 117 ~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 195 (353)
T 3h5n_A 117 KNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 195 (353)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred hCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence 5789999995 7799999999999996689999874311110 0111112234555555
Q ss_pred ccCCcc----cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 86 DVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 86 d~~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
++.+.. +.++|+||.+..... . .-..+-++|.+.++.+|+.+..
T Consensus 196 ~i~~~~~~~~~~~~DlVvd~~Dn~~------~----------~r~~ln~~c~~~~~p~i~~~~~ 243 (353)
T 3h5n_A 196 NINDYTDLHKVPEADIWVVSADHPF------N----------LINWVNKYCVRANQPYINAGYV 243 (353)
T ss_dssp CCCSGGGGGGSCCCSEEEECCCCST------T----------HHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccCchhhhhHhccCCEEEEecCChH------H----------HHHHHHHHHHHhCCCEEEEEEe
Confidence 554332 668999999763211 0 1124567889999988876543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=59.59 Aligned_cols=69 Identities=20% Similarity=0.453 Sum_probs=53.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~ 101 (343)
..|+|+|+| .|-+|++|++.|.++| ++|++++++ .+.+..+....++..+.||.+++. ..++|.+|-+
T Consensus 2 ~~M~iiI~G-~G~vG~~la~~L~~~~-~~v~vId~d----~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 2 NAMKIIILG-AGQVGGTLAENLVGEN-NDITIVDKD----GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHTCSTT-EEEEEEESC----HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECC----HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 359999999 5999999999999999 999999863 333433333347889999999874 3479998855
Q ss_pred c
Q 019309 102 A 102 (343)
Q Consensus 102 a 102 (343)
.
T Consensus 76 t 76 (461)
T 4g65_A 76 T 76 (461)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0016 Score=57.39 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC---eEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-ccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~d~vi~~a~~~ 105 (343)
|+|.|.||+|++|+.|++.|+.+..+ .++.+.....+. .+... ....+.+.. ..++ ...++|+||.|.+..
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~-~g~~i~~~~--~~~~~~~~~~DvVf~a~g~~ 76 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSF-GGTTGTLQD--AFDLEALKALDIIVTCQGGD 76 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGG-GTCCCBCEE--TTCHHHHHTCSEEEECSCHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Ccccc-CCCceEEEe--cCChHHhcCCCEEEECCCch
Confidence 68999999999999999955444313 455554422221 11111 111233332 2222 235899999988521
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCe--EEEEeCC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTS 145 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r--~i~~SS~ 145 (343)
....++..+.+.|++ +|=.||.
T Consensus 77 ------------------~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 77 ------------------YTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp ------------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred ------------------hHHHHHHHHHHCCCCEEEEcCChh
Confidence 133566667778874 4444443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00086 Score=58.98 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=33.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..+++|||+|++|-+|..+++.+...| .+|++++|+.
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~ 204 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGE 204 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECST
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCH
Confidence 467899999999999999999999999 8999998754
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=56.79 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=47.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhhhcC-CCceEEEEcccCC-----cccCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIG-HPRFELIRHDVTE-----PLLIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~-~~~~~~~~~d~~~-----~~~~~~d~v 98 (343)
..+++++|+|+ |-+|+.++..|.+.|..+|+++.|... .+.+.+.+.+. .....+...++.+ ..+.++|+|
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence 46789999996 899999999999999338999998521 11112211111 1122233333333 234579999
Q ss_pred EEecC
Q 019309 99 YHLAC 103 (343)
Q Consensus 99 i~~a~ 103 (343)
|++..
T Consensus 231 INaTp 235 (315)
T 3tnl_A 231 TNATG 235 (315)
T ss_dssp EECSS
T ss_pred EECcc
Confidence 99874
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=56.83 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=55.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC--CceEEEEcccCCccc-CCCCEEEEecCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH--PRFELIRHDVTEPLL-IEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~d~vi~~a~~~~ 106 (343)
.+|.|.||||++|+.|++.|.++...++..+.-. ...-..+.+.... ..+.+...| ...+ .++|+||.|++...
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~-~~aG~~~~~~~p~~~~~l~~~~~~--~~~~~~~~Dvvf~alp~~~ 90 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR-TYAGKKLEEIFPSTLENSILSEFD--PEKVSKNCDVLFTALPAGA 90 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS-TTTTSBHHHHCGGGCCCCBCBCCC--HHHHHHHCSEEEECCSTTH
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCc-ccccCChHHhChhhccCceEEeCC--HHHhhcCCCEEEECCCcHH
Confidence 4899999999999999999999975566666421 1111122211110 122222222 1122 46999998875221
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
...++..+ .|+++|=.||.+-+
T Consensus 91 ------------------s~~~~~~~--~g~~VIDlSsdfRl 112 (351)
T 1vkn_A 91 ------------------SYDLVREL--KGVKIIDLGADFRF 112 (351)
T ss_dssp ------------------HHHHHTTC--CSCEEEESSSTTTC
T ss_pred ------------------HHHHHHHh--CCCEEEECChhhhC
Confidence 12333333 57799988887644
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0046 Score=53.46 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCC--eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+.|+|.|+| .|.+|..+++.|.+.| + +|++++|+.. ..........+.....|+.+..+.++|+||.+.
T Consensus 32 ~~~kI~IIG-~G~mG~slA~~l~~~G-~~~~V~~~dr~~~----~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav 102 (314)
T 3ggo_A 32 SMQNVLIVG-VGFMGGSFAKSLRRSG-FKGKIYGYDINPE----SISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS 102 (314)
T ss_dssp SCSEEEEES-CSHHHHHHHHHHHHTT-CCSEEEEECSCHH----HHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC-CCCEEEEEECCHH----HHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC
Confidence 458999999 8999999999999999 7 8999988432 222111111111122333221456899999876
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0056 Score=53.45 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=33.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|-||..+++.+...| .+|++++|+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 183 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGG 183 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 468899999999999999999999999 899999874
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0032 Score=54.76 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|.||..+++.+...| .+|++++|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~ 174 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGT 174 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.02 Score=46.19 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+|+|.|+| .|.+|+.++..|.+.| ++|++++|.
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~~~~ 51 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAG-HEVTYYGSK 51 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 468999999 8999999999999999 999999874
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0058 Score=53.52 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|-+|..+++.+...| .+|++++|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~ 189 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGS 189 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 367899999999999999999999999 899999874
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00076 Score=59.84 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-----cccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-----PLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~d~vi~~a 102 (343)
.+++|+|+|+ |-+|..+++.|...| .+|++++|+.... +........ .+ .+|..+ ..+.++|+||+++
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~G-a~V~~~d~~~~~~-~~~~~~~g~-~~---~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMG-AQVTILDVNHKRL-QYLDDVFGG-RV---ITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHTTT-SE---EEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHhcCc-eE---EEecCCHHHHHHHHhCCCEEEECC
Confidence 4689999998 999999999999999 8999999843211 111221211 12 222222 2334799999998
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
+.
T Consensus 238 g~ 239 (369)
T 2eez_A 238 LV 239 (369)
T ss_dssp C-
T ss_pred CC
Confidence 74
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=49.07 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=63.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC------------------ccchh----hhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------------------KDNLK----KWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------~~~~~----~~~~~~~~~~~~~ 85 (343)
.+++|+|.|+ |-+|+++++.|...|..+++++++..-.. .+.+. .....-.++.+..
T Consensus 27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 105 (251)
T 1zud_1 27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ 105 (251)
T ss_dssp HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 5689999996 55999999999999966888886632110 00111 1111123444444
Q ss_pred ccCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
++.+. .+.++|+||.+... ...-..+.++|.+.++.+|+.+....+|
T Consensus 106 ~~~~~~~~~~~~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~~p~i~~~~~g~~G 156 (251)
T 1zud_1 106 RLTGEALKDAVARADVVLDCTDN-----------------MATRQEINAACVALNTPLITASAVGFGG 156 (251)
T ss_dssp CCCHHHHHHHHHHCSEEEECCSS-----------------HHHHHHHHHHHHHTTCCEEEEEEEBTEE
T ss_pred cCCHHHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHhCCCEEEEeccccce
Confidence 44322 23468999987631 1122356778888888888877654443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0042 Score=52.42 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=47.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++++|+|+ |-+|+.++..|.+.|..+|+++.|.... .+.+...+....+.... +.+....++|+||++..
T Consensus 119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~-a~~la~~~~~~~~~~~~--~~~l~~~~~DivInaTp 190 (272)
T 3pwz_A 119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAK-ALALRNELDHSRLRISR--YEALEGQSFDIVVNATS 190 (272)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHH-HHHHHHHHCCTTEEEEC--SGGGTTCCCSEEEECSS
T ss_pred cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhccCCeeEee--HHHhcccCCCEEEECCC
Confidence 5789999996 7899999999999994489999985322 22222222212244432 22221257999999864
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.068 Score=40.17 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=57.6
Q ss_pred hhhhccCCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEE
Q 019309 22 FSKFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQI 98 (343)
Q Consensus 22 ~~~~~~~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~v 98 (343)
...++...++|.|.|++ |.+|..+++.|.+.| ++|+.+... .+.+ .++..+ .++.+. ...+|.+
T Consensus 15 l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~----~~~i------~G~~~y-~sl~~l-~~~vDlv 81 (144)
T 2d59_A 15 IREILTRYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK----YEEV------LGRKCY-PSVLDI-PDKIEVV 81 (144)
T ss_dssp HHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT----CSEE------TTEECB-SSGGGC-SSCCSEE
T ss_pred HHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCC----CCeE------CCeecc-CCHHHc-CCCCCEE
Confidence 44555446899999998 899999999999999 887666431 1111 133322 222222 1268998
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~S 143 (343)
+-+.-. .....+++.|.+.|++.+.+.
T Consensus 82 vi~vp~------------------~~~~~vv~~~~~~gi~~i~~~ 108 (144)
T 2d59_A 82 DLFVKP------------------KLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp EECSCH------------------HHHHHHHHHHHHHTCSEEEEC
T ss_pred EEEeCH------------------HHHHHHHHHHHHcCCCEEEEC
Confidence 876510 224567788888898655444
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.021 Score=49.50 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=25.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVAD 61 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~ 61 (343)
+||.|.|+ |+||+.+++.|.++ +..+|+++.
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eivaIn 34 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVIN 34 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 58999999 99999999999988 434666554
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00053 Score=60.58 Aligned_cols=36 Identities=19% Similarity=0.056 Sum_probs=32.7
Q ss_pred cCC--CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecC
Q 019309 27 QSN--MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY 63 (343)
Q Consensus 27 ~~~--~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~ 63 (343)
..+ ++|||+||+|-||..+++.+...| . +|++++++
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~ 195 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGT 195 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCC
Confidence 357 999999999999999999999999 7 99998874
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.022 Score=49.83 Aligned_cols=105 Identities=10% Similarity=0.154 Sum_probs=67.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC------------------ccc----hhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------------------KDN----LKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------~~~----~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.| .|-+|.++++.|...|-..+++++...-.. .+. +..+...-.++.+..
T Consensus 35 ~~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 113 (346)
T 1y8q_A 35 RASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE 113 (346)
T ss_dssp HTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence 568999999 577999999999999966888885421110 001 111112223555555
Q ss_pred ccCC---cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~---~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
++.+ ..+.++|+||.+.. |...-..+-++|++.++.+|..++.+.+|.
T Consensus 114 ~~~~~~~~~~~~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~ 164 (346)
T 1y8q_A 114 DIEKKPESFFTQFDAVCLTCC-----------------SRDVIVKVDQICHKNSIKFFTGDVFGYHGY 164 (346)
T ss_dssp CGGGCCHHHHTTCSEEEEESC-----------------CHHHHHHHHHHHHHTTCEEEEEEEEBTEEE
T ss_pred ccCcchHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEeecccEEE
Confidence 5532 23457999998752 122234577889999989998877776653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0037 Score=54.55 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|.||..+++.+...| .+|++++|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~ 179 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVST 179 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.002 Score=55.22 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=47.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
..+++|+|+|+ |.+|+.++..|.+.|..+|+++.|.... .+.+.+.+....-+....+-....+.++|+||++.+..
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~k-a~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEK-AERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHH-HHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHH-HHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 35789999997 7799999999999993389999885321 12222222110002221111122445799999998643
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.013 Score=53.43 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=52.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCC-CCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-VDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~d~vi~~a~~ 104 (343)
.+++|+|+|. |-.|..+++.|.++| ++|++.++........ .+.+...++++..+...+..+.+ +|.||...|.
T Consensus 8 ~~k~v~viG~-G~sG~s~A~~l~~~G-~~V~~~D~~~~~~~~~-~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 8 ENKKVLVLGL-ARSGEAAARLLAKLG-AIVTVNDGKPFDENPT-AQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI 82 (451)
T ss_dssp TTCEEEEECC-TTTHHHHHHHHHHTT-CEEEEEESSCGGGCHH-HHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCC-CEEEEEeCCcccCChH-HHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence 5789999997 889999999999999 9999999754221122 22233357887776554433345 8999987664
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.004 Score=52.76 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=46.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++++|+|+ |-+|+.++..|.+.|..+|+++.|.... .+.+...+. ...+.... +.+.. .++|+||++..
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~-a~~la~~~~~~~~~~~~~--~~~l~-~~aDiIInaTp 196 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAK-AEQLAELVAAYGEVKAQA--FEQLK-QSYDVIINSTS 196 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHH-HHHHHHHHGGGSCEEEEE--GGGCC-SCEEEEEECSC
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHH-HHHHHHHhhccCCeeEee--HHHhc-CCCCEEEEcCc
Confidence 36789999997 7899999999999994489999985322 122222211 11234332 22222 57899999874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0059 Score=53.68 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|-+|..+++.+...| .+|++++|+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~ 204 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGT 204 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0072 Score=54.96 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.|+|.|+| .|++|..++..|.+.| ++|++++|+
T Consensus 2 ~mkI~VIG-~G~vG~~lA~~La~~G-~~V~~~D~~ 34 (450)
T 3gg2_A 2 SLDIAVVG-IGYVGLVSATCFAELG-ANVRCIDTD 34 (450)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhcC-CEEEEEECC
Confidence 48999998 6999999999999999 999999985
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.014 Score=49.08 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=52.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhc----------------------CCCce-EE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWI----------------------GHPRF-EL 82 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~----------------------~~~~~-~~ 82 (343)
..+|+|||.| .|-+|...++.|++.| ++|++++......- +.+..+. ...++ .+
T Consensus 11 l~~k~VLVVG-gG~va~rka~~Ll~~G-a~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 88 (274)
T 1kyq_A 11 LKDKRILLIG-GGEVGLTRLYKLMPTG-CKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY 88 (274)
T ss_dssp CTTCEEEEEE-ESHHHHHHHHHHGGGT-CEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHHhCC-CEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence 3689999999 7899999999999999 99999876322110 1122221 22456 78
Q ss_pred EEcccCCcccC------CCCEEEEec
Q 019309 83 IRHDVTEPLLI------EVDQIYHLA 102 (343)
Q Consensus 83 ~~~d~~~~~~~------~~d~vi~~a 102 (343)
+..++.+..+. ++|.||-+.
T Consensus 89 i~~~~~~~dL~~l~~~~~adlViaat 114 (274)
T 1kyq_A 89 IRSDFKDEYLDLENENDAWYIIMTCI 114 (274)
T ss_dssp ECSSCCGGGGCCSSTTCCEEEEEECC
T ss_pred EcCCCCHHHHhhcccCCCeEEEEEcC
Confidence 88877666665 788888654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0039 Score=54.90 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=30.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+.|+|.|+| .|.+|..++..|.+.| ++|++++|.
T Consensus 2 m~~mki~iiG-~G~~G~~~a~~L~~~g-~~V~~~~r~ 36 (359)
T 1bg6_A 2 IESKTYAVLG-LGNGGHAFAAYLALKG-QSVLAWDID 36 (359)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCcCeEEEEC-CCHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 4568999999 5999999999999999 999999874
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0039 Score=53.46 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+.++|.|+||.|.+|..++..|.+.| ++|++++|+
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~~~~ 54 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG-YPISILDRE 54 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 45789999999999999999999999 999999874
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0067 Score=51.96 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=44.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
++.|+|.|+| .|.+|..+++.|.+.| ++|++++|+...... +.. .++.. ..|+. .... +|+||.+.
T Consensus 13 ~~~~~I~vIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~-~~~----~g~~~-~~~~~-~~~~-aDvvi~~v 78 (296)
T 3qha_A 13 TEQLKLGYIG-LGNMGAPMATRMTEWP-GGVTVYDIRIEAMTP-LAE----AGATL-ADSVA-DVAA-ADLIHITV 78 (296)
T ss_dssp --CCCEEEEC-CSTTHHHHHHHHTTST-TCEEEECSSTTTSHH-HHH----TTCEE-CSSHH-HHTT-SSEEEECC
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHH-HHH----CCCEE-cCCHH-HHHh-CCEEEEEC
Confidence 3468999998 8999999999999999 999999986433221 211 13322 11221 2233 89999876
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.006 Score=53.72 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+||+|-||..+++.+...| .+|++++|+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~ 196 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGS 196 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.019 Score=41.85 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=55.4
Q ss_pred CEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 30 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
++|.|.|+| +-.|..+.+.|++.| ++|+.+... .+.. .+... ..++.|-.. +|.++-+..
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~----~~~i------~G~~~-y~sl~dlp~--vDlavi~~p--- 67 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRK----KGEV------LGKTI-INERPVIEG--VDTVTLYIN--- 67 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSS----CSEE------TTEEC-BCSCCCCTT--CCEEEECSC---
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCC----CCcC------CCeec-cCChHHCCC--CCEEEEEeC---
Confidence 679999998 678999999999999 899988632 1111 12222 223333332 788886652
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
-..+..+++.|.+.|+|.|.+++.
T Consensus 68 ---------------~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 68 ---------------PQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp ---------------HHHHGGGHHHHHHHCCSEEEECTT
T ss_pred ---------------HHHHHHHHHHHHhcCCCEEEECCC
Confidence 122446888888889976667654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=54.99 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=46.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCC----C---ceEEEEcccCCcccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH----P---RFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----~---~~~~~~~d~~~~~~~~~d~vi 99 (343)
..+++++|+|++ -+|+.++..|.+.| +|+++.|.... .+.+...+.. . .+++ .|+ ...+.++|+||
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r~~~~-~~~l~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN--NIIIANRTVEK-AEALAKEIAEKLNKKFGEEVKF--SGL-DVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECSSHHH-HHHHHHHHHHHHTCCHHHHEEE--ECT-TCCCTTCCEEE
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC--CEEEEECCHHH-HHHHHHHHhhhcccccceeEEE--eeH-HHhhCCCCEEE
Confidence 367899999985 99999999999999 89998884321 1122111110 0 1122 222 33456799999
Q ss_pred EecCCC
Q 019309 100 HLACPA 105 (343)
Q Consensus 100 ~~a~~~ 105 (343)
++++..
T Consensus 199 n~ag~~ 204 (287)
T 1nvt_A 199 NATPIG 204 (287)
T ss_dssp ECSCTT
T ss_pred ECCCCC
Confidence 999754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.008 Score=52.61 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=47.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcc--cCCc-----ccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD--VTEP-----LLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--~~~~-----~~~~~d~vi 99 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++.... +.+..+ .. -.++..+ +.+. ...++|+||
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~-~~~~~~-ga--~~v~~~~~~~~~~v~~~~~~~g~Dvvi 232 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAAT-EFVKSV-GA--DIVLPLEEGWAKAVREATGGAGVDMVV 232 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGH-HHHHHH-TC--SEEEESSTTHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHhc-CC--cEEecCchhHHHHHHHHhCCCCceEEE
Confidence 357899999999999999999999999 8999998753222 222222 21 1222222 1111 112699999
Q ss_pred EecCC
Q 019309 100 HLACP 104 (343)
Q Consensus 100 ~~a~~ 104 (343)
+++|.
T Consensus 233 d~~g~ 237 (342)
T 4eye_A 233 DPIGG 237 (342)
T ss_dssp ESCC-
T ss_pred ECCch
Confidence 99973
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=54.82 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|||+|++|-+|..+++.+...| .+|++++++
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~ 200 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGS 200 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.027 Score=51.38 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCC-eEEEEecCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKN-EVIVADNYFT 65 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~-~V~~~~r~~~ 65 (343)
+..|+|.|.| .|++|..++..|.+. | + +|++++|+..
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G-~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPC-FEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTT-CCEEEEECCCCT
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCC-CCeEEEEECChh
Confidence 3458999998 899999999999999 9 9 9999998754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0094 Score=51.96 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 182 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVAST 182 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 367899999999999999999999999 899999874
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.033 Score=50.71 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
.+|+|+|.| .|-+|...++.|++.| .+|++++.. ..+.+..+....++++...++.+..+.++|.||-+-+.
T Consensus 11 ~~~~vlVvG-gG~va~~k~~~L~~~g-a~V~vi~~~---~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~--- 82 (457)
T 1pjq_A 11 RDRDCLIVG-GGDVAERKARLLLEAG-ARLTVNALT---FIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD--- 82 (457)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTT-BEEEEEESS---CCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC---
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEcCC---CCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCC---
Confidence 689999999 7889999999999999 999999863 22344444444678898888887778889998865421
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCe
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r 138 (343)
+ ..| ..+...|++.++.
T Consensus 83 ------~----~~n----~~i~~~a~~~~i~ 99 (457)
T 1pjq_A 83 ------D----TVN----QRVSDAAESRRIF 99 (457)
T ss_dssp ------H----HHH----HHHHHHHHHTTCE
T ss_pred ------H----HHH----HHHHHHHHHcCCE
Confidence 1 122 2577788887754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.003 Score=55.34 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc----------cCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL----------LIEVD 96 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~d 96 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++... .+.+.++ ... ..+ |..+.. ..++|
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~-~~~~~~l-ga~--~~~--~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKH-TEELLRL-GAA--YVI--DTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTT-HHHHHHH-TCS--EEE--ETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHH-HHHHHhC-CCc--EEE--eCCcccHHHHHHHHhCCCCCc
Confidence 357899999999999999999999999 899999885432 2223332 111 122 222211 13699
Q ss_pred EEEEecC
Q 019309 97 QIYHLAC 103 (343)
Q Consensus 97 ~vi~~a~ 103 (343)
+||+++|
T Consensus 216 vvid~~g 222 (340)
T 3gms_A 216 AAIDSIG 222 (340)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999986
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.03 Score=48.70 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
|++||.|.|. |.||+.+++.|.++...+|+++.
T Consensus 2 M~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~ 34 (335)
T 1u8f_O 2 GKVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAIN 34 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEec
Confidence 4579999996 99999999999987656777665
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0048 Score=52.49 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=31.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|..++|.|+| .|.+|+.+++.|.+.| ++|++++|+.
T Consensus 2 m~~~kV~VIG-aG~mG~~iA~~la~~G-~~V~l~d~~~ 37 (283)
T 4e12_A 2 TGITNVTVLG-TGVLGSQIAFQTAFHG-FAVTAYDINT 37 (283)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 3457999998 5999999999999999 9999998853
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.01 Score=49.74 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=45.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+++++|+|+ |-.|+.++..|.+.| .+|+++.|...+ .+.+. .+ +++.. .+.+. .++|+||++..
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~~v~V~nRt~~k-a~~la-~~---~~~~~--~~~~l--~~~DiVInaTp 181 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-LQVSVLNRSSRG-LDFFQ-RL---GCDCF--MEPPK--SAFDLIINATS 181 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCTT-HHHHH-HH---TCEEE--SSCCS--SCCSEEEECCT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHHH-HC---CCeEe--cHHHh--ccCCEEEEccc
Confidence 789999995 999999999999999 999999996433 22222 22 23332 22222 28999999874
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=50.73 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=44.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+++|+|.|+| .|.+|..++..|.+.| ++|++++|+. +....... .+......|+ ...+.++|+||-+.
T Consensus 5 ~~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~----~~~~~~~~-~g~~~~~~~~-~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 5 GTDFHVGIVG-LGSMGMGAARSCLRAG-LSTWGADLNP----QACANLLA-EGACGAAASA-REFAGVVDALVILV 72 (303)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCH----HHHHHHHH-TTCSEEESSS-TTTTTTCSEEEECC
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCC-CeEEEEECCH----HHHHHHHH-cCCccccCCH-HHHHhcCCEEEEEC
Confidence 3568999998 8999999999999999 9999998843 22222211 1222212222 22345789999876
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.015 Score=48.83 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+|+|.|+|+ |.+|+.++..|.+.| ++ |.+++|+. +.........++.. ..|+. ..+.++|+||-+.
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g-~~~v~~~~~~~----~~~~~~~~~~g~~~-~~~~~-~~~~~~Dvvi~av 76 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKG-FRIVQVYSRTE----ESARELAQKVEAEY-TTDLA-EVNPYAKLYIVSL 76 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSSH----HHHHHHHHHTTCEE-ESCGG-GSCSCCSEEEECC
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCC-CeEEEEEeCCH----HHHHHHHHHcCCce-eCCHH-HHhcCCCEEEEec
Confidence 479999995 999999999999999 87 88888742 22221111113332 22222 2345799999876
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.032 Score=45.10 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=25.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~ 60 (343)
.|+.+|+|++|-+|+.+++...+.+ .++.+.
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~-~elv~~ 42 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKG-HELVLK 42 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE
T ss_pred cceeEEEEecCHHHHHHHHHHhCCC-CEEEEE
Confidence 5899999999999999998776667 775554
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0041 Score=57.84 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=43.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEE-cccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~d~vi~~a~~~ 105 (343)
.+++++|+|| |-+|++++..|.+.| .+|+++.|.... .+.+...+. .+... .|+.+.....+|++||++|..
T Consensus 363 ~~k~vlV~Ga-GGig~aia~~L~~~G-~~V~i~~R~~~~-a~~la~~~~---~~~~~~~dl~~~~~~~~DilVN~agvg 435 (523)
T 2o7s_A 363 ASKTVVVIGA-GGAGKALAYGAKEKG-AKVVIANRTYER-ALELAEAIG---GKALSLTDLDNYHPEDGMVLANTTSMG 435 (523)
T ss_dssp ---CEEEECC-SHHHHHHHHHHHHHC-C-CEEEESSHHH-HHHHHHHTT---C-CEETTTTTTC--CCSEEEEECSSTT
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHHHHHcC---CceeeHHHhhhccccCceEEEECCCCC
Confidence 5689999998 799999999999999 799999885321 122222221 11111 132211223489999999853
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=54.44 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=48.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-c----ccCCCCEEEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-P----LLIEVDQIYH 100 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~----~~~~~d~vi~ 100 (343)
...+.+|||+|++|-+|...++.+...| .+|++++++.... +....+ ... .++ |..+ . .+.++|+||+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~-~~~~~~-ga~--~~~--~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKL-ALPLAL-GAE--EAA--TYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGS-HHHHHT-TCS--EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHhc-CCC--EEE--ECCcchhHHHHhcCceEEEE
Confidence 4578899999999999999999999999 8999998853322 222222 111 122 2222 1 2257999999
Q ss_pred ecCC
Q 019309 101 LACP 104 (343)
Q Consensus 101 ~a~~ 104 (343)
+|.
T Consensus 196 -~g~ 198 (302)
T 1iz0_A 196 -VRG 198 (302)
T ss_dssp -CSC
T ss_pred -CCH
Confidence 863
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=54.46 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=47.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC--CccchhhhcC-CCceEEEEcccCC-----cccCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG--SKDNLKKWIG-HPRFELIRHDVTE-----PLLIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~d~~~-----~~~~~~d~v 98 (343)
..++++||+|+ |-.|+.++..|.+.|..+|+++.|.... +.+.+.+.+. .....+...++.+ ..+.++|+|
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI 224 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL 224 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence 36789999996 8899999999999994489999985211 1111111111 1122232333333 124478999
Q ss_pred EEecC
Q 019309 99 YHLAC 103 (343)
Q Consensus 99 i~~a~ 103 (343)
||+..
T Consensus 225 INaTp 229 (312)
T 3t4e_A 225 TNGTK 229 (312)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 99864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0023 Score=54.42 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=47.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCC--cccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTE--PLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~--~~~~~~d~vi~~a 102 (343)
..+++++|+|+ |-+|+.++..|.+.|..+|+++.|.... .+.+.+.+. ...+.+...++.+ ..+.++|+||++.
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~-a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSR-AQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHH-HHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 36789999997 8999999999999993379999885322 122211111 0122222233222 2344789999987
Q ss_pred C
Q 019309 103 C 103 (343)
Q Consensus 103 ~ 103 (343)
.
T Consensus 203 p 203 (283)
T 3jyo_A 203 P 203 (283)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0088 Score=51.94 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 174 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSS 174 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=49.84 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.+|+|+|+| +|.+|+.++..|.+.| .+|++++|+. +....+....+++... ++ ...+.++|+||++...
T Consensus 128 ~~~~v~iiG-aG~~g~aia~~L~~~g-~~V~v~~r~~----~~~~~l~~~~g~~~~~-~~-~~~~~~aDiVi~atp~ 196 (275)
T 2hk9_A 128 KEKSILVLG-AGGASRAVIYALVKEG-AKVFLWNRTK----EKAIKLAQKFPLEVVN-SP-EEVIDKVQVIVNTTSV 196 (275)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSSH----HHHHHHTTTSCEEECS-CG-GGTGGGCSEEEECSST
T ss_pred CCCEEEEEC-chHHHHHHHHHHHHcC-CEEEEEECCH----HHHHHHHHHcCCeeeh-hH-HhhhcCCCEEEEeCCC
Confidence 578999999 5899999999999999 7999998742 2222222222333221 22 2234579999998853
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.012 Score=51.43 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=49.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
.++|+|+|+ |.+|+.+++.|.+.| + |++++++. +... +...++.++.+|.+++. +.++|.|+-+.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~----~~~~--~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDEN----VRKK--VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL 185 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGG----GHHH--HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCCh----hhhh--HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence 468999995 999999999999999 7 88887632 2222 22357899999998873 44789888765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0094 Score=52.26 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~ 63 (343)
..+++|||+|++|-+|..+++.+... | .+|++++++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~ 205 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVR 205 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 46789999999999999999999999 9 899998874
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.06 Score=40.15 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=52.7
Q ss_pred cCCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
...++|.|.|+| |.+|..+++.|++.| ++|+.+++.. +.. .++..+ .++.+- ...+|+++-+..
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp~~----~~i------~G~~~~-~s~~el-~~~vDlvii~vp 78 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNY----DEI------EGLKCY-RSVREL-PKDVDVIVFVVP 78 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTC----SEE------TTEECB-SSGGGS-CTTCCEEEECSC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCCCC----CeE------CCeeec-CCHHHh-CCCCCEEEEEeC
Confidence 345789999997 999999999999999 8888776531 111 133322 222221 236899987752
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 142 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~ 142 (343)
. .....+++.|.+.|++.+.+
T Consensus 79 ~------------------~~v~~v~~~~~~~g~~~i~~ 99 (138)
T 1y81_A 79 P------------------KVGLQVAKEAVEAGFKKLWF 99 (138)
T ss_dssp H------------------HHHHHHHHHHHHTTCCEEEE
T ss_pred H------------------HHHHHHHHHHHHcCCCEEEE
Confidence 0 12345666677788854443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0069 Score=53.28 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~ 201 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGS 201 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 357899999999999999999999999 899999874
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0065 Score=51.33 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=45.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++++|+|+ |-+|+.++..|.+.| . +|+++.|.... ...+. ..+.....+-....+.++|+||++..
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G-~~~v~v~~R~~~~----a~~la--~~~~~~~~~~~~~~~~~aDiVInaTp 184 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIV-RPTLTVANRTMSR----FNNWS--LNINKINLSHAESHLDEFDIIINTTP 184 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTC-CSCCEEECSCGGG----GTTCC--SCCEEECHHHHHHTGGGCSEEEECCC
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEeCCHHH----HHHHH--HhcccccHhhHHHHhcCCCEEEECcc
Confidence 35789999996 889999999999999 6 89999985322 11111 12222222111223557999999864
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.029 Score=55.96 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc------------------cchh----hhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK------------------DNLK----KWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------~~~~----~~~~~~~~~~~~~ 85 (343)
.+.+|||.|+ |-+|.++++.|...|-.++++++...-... +... .+.+.-.++.+..
T Consensus 26 ~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~ 104 (1015)
T 3cmm_A 26 QTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDS 104 (1015)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCC
T ss_pred hcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecC
Confidence 5689999995 779999999999999668988876421110 0011 1111224555555
Q ss_pred ccCCcccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 86 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 86 d~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
++....+.++|+||.+.. .|...-..+.++|++.++.+|+.++.+.+|
T Consensus 105 ~l~~~~l~~~DvVv~~~d----------------~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 105 LDDVTQLSQFQVVVATDT----------------VSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp CCCSTTGGGCSEEEECTT----------------SCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred CCCHHHHhcCCEEEEcCC----------------CCHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 665555668999997642 022223467788999999999888766554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|.+|..+++.+...| .+|++++++
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~ 197 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSS 197 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECC
Confidence 467899999999999999999999999 899999874
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0096 Score=51.12 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.|+|.|+|+ |.+|..++..|.+.| ++|++++|+
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G-~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQT 47 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECC
Confidence 468999995 999999999999999 999999985
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.046 Score=47.40 Aligned_cols=71 Identities=14% Similarity=-0.031 Sum_probs=47.4
Q ss_pred CCEEEEEcCchhHHH-HHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-CCCCEEEEecCC
Q 019309 29 NMRILVTGGAGFIGS-HLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACP 104 (343)
Q Consensus 29 ~~~ilItGatG~iG~-~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~vi~~a~~ 104 (343)
.|+|+|.| -|-.|. .+++.|.++| ++|++.++.... + ..+.+...++++..+.-.+... .++|.||...|.
T Consensus 4 ~~~i~~iG-iGg~Gms~~A~~L~~~G-~~V~~~D~~~~~--~-~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 4 MKHIHIIG-IGGTFMGGLAAIAKEAG-FEVSGCDAKMYP--P-MSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CCEEEEES-CCSHHHHHHHHHHHHTT-CEEEEEESSCCT--T-HHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CcEEEEEE-ECHHHHHHHHHHHHhCC-CEEEEEcCCCCc--H-HHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 47899999 566777 5999999999 999999975321 1 1222233477777653222222 368999987664
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.014 Score=49.50 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=30.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+|.|.|+ |.+|..++..|.+.| ++|++++|..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g-~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQG-HEVQGWLRVP 33 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCC-CCEEEEEcCc
Confidence 68999996 999999999999999 9999999864
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.015 Score=49.11 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=43.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceE-EEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|.|+| .|.+|+.++..|.+.| ++|++++|+.. ....... .++. ....|+.+ . .++|+||.+.
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~~~~~----~~~~~~~-~g~~~~~~~~~~~-~-~~~D~vi~av 65 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQS----TCEKAVE-RQLVDEAGQDLSL-L-QTAKIIFLCT 65 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH----HHHHHHH-TTSCSEEESCGGG-G-TTCSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCC-CEEEEEECCHH----HHHHHHh-CCCCccccCCHHH-h-CCCCEEEEEC
Confidence 6899999 7999999999999999 89999987422 1211111 1221 12233332 2 6899999876
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0099 Score=51.44 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhhhcCCCceEEEEcc-cCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIGHPRFELIRHD-VTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~d~vi~~a 102 (343)
.|.|+|.|+| .|.+|..++..|.+.|.++|++++|+.. ...+...+.+...++ .+ -....+.++|+||-+.
T Consensus 22 ~M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----~~~s~~e~~~~aDvVi~av 95 (317)
T 4ezb_A 22 SMMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV----EPLDDVAGIACADVVLSLV 95 (317)
T ss_dssp TSCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----EEESSGGGGGGCSEEEECC
T ss_pred ccCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC----CCCCHHHHHhcCCEEEEec
Confidence 3568999999 8999999999999998678999998531 111111111111233 11 1123445789999876
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.049 Score=44.78 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=51.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeE-EEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEV-IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
|+|.|.|. |.+|+.+++.|.+.| +++ .+++|.. . . . . ...|+.+....++|+|+.|..+.
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g-~~lv~v~d~~~-~-~---~------~---~~~~~~~l~~~~~DvVv~~~~~~--- 61 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNG-FEIAAILDVRG-E-H---E------K---MVRGIDEFLQREMDVAVEAASQQ--- 61 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECSSC-C-C---T------T---EESSHHHHTTSCCSEEEECSCHH---
T ss_pred CEEEEECC-CHHHHHHHHHHhcCC-CEEEEEEecCc-c-h---h------h---hcCCHHHHhcCCCCEEEECCCHH---
Confidence 68999996 999999999999888 887 4556532 1 1 0 1 22232221115799999987311
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
....++..+.+.|.++|..|+.
T Consensus 62 ---------------~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 62 ---------------AVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp ---------------HHHHHHHHHHHTTCEEEESCGG
T ss_pred ---------------HHHHHHHHHHHCCCcEEEECcc
Confidence 1123345666777777766554
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.011 Score=50.21 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=45.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC---eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|++|+|.|+|+ |.+|..+++.|.+.| + +|++++|+.. .........++.... |. ...+.++|+||-+.
T Consensus 1 M~~~~I~iIG~-G~mG~aia~~l~~~g-~~~~~V~v~dr~~~----~~~~l~~~~gi~~~~-~~-~~~~~~aDvVilav 71 (280)
T 3tri_A 1 MNTSNITFIGG-GNMARNIVVGLIANG-YDPNRICVTNRSLD----KLDFFKEKCGVHTTQ-DN-RQGALNADVVVLAV 71 (280)
T ss_dssp -CCSCEEEESC-SHHHHHHHHHHHHTT-CCGGGEEEECSSSH----HHHHHHHTTCCEEES-CH-HHHHSSCSEEEECS
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCC-CCCCeEEEEeCCHH----HHHHHHHHcCCEEeC-Ch-HHHHhcCCeEEEEe
Confidence 35689999995 999999999999999 7 8999988532 222222212444321 11 12345789999876
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.036 Score=47.01 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC-----------------Ccc----chhhhcCCCceEEEEcc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG-----------------SKD----NLKKWIGHPRFELIRHD 86 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-----------------~~~----~~~~~~~~~~~~~~~~d 86 (343)
.+.+|+|.| .|-+|+++++.|...|--++++++...-. +.+ .+..+...-.++.+..+
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 457999999 68899999999999996688888764311 001 11111122345555555
Q ss_pred cCCc----cc------------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 87 VTEP----LL------------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 87 ~~~~----~~------------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+.+. .+ .++|+||.+... ...-..+-++|.+.++.+|+.+..
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-----------------~~~R~~in~~c~~~~~Pli~~gv~ 171 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-----------------FEARMTINTACNELGQTWMESGVS 171 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-----------------HHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCcc-----------------hhhhhHHHHHHHHhCCCEEEeeee
Confidence 5531 11 479999987631 112235778889999888876543
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.088 Score=45.71 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVAD 61 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~ 61 (343)
.+||.|.|+ |.||+.+++.|.++ +..+|+++.
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaIn 35 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAIN 35 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 369999999 99999999999988 535666654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.033 Score=50.45 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=29.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|.|+| +|++|..++..|.+.| ++|++++|+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G-~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVS 32 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 6899998 8999999999999999 999999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.013 Score=51.77 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC--CCccchhhhcCCCceEEEEcccCCc---c----cCCCCEEE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIGHPRFELIRHDVTEP---L----LIEVDQIY 99 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~d~~~~---~----~~~~d~vi 99 (343)
+++|||+|+ |-+|..+++.+...| .+|++++++.. .+.+....+ +++.+ | .+. . ..++|+||
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~~~----ga~~v--~-~~~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYG-LEVWMANRREPTEVEQTVIEET----KTNYY--N-SSNGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHT-CEEEEEESSCCCHHHHHHHHHH----TCEEE--E-CTTCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCccchHHHHHHHHh----CCcee--c-hHHHHHHHHHhCCCCCEEE
Confidence 899999999 999999999999999 79999987531 111112221 23333 3 220 1 14699999
Q ss_pred EecCC
Q 019309 100 HLACP 104 (343)
Q Consensus 100 ~~a~~ 104 (343)
+++|.
T Consensus 252 d~~g~ 256 (366)
T 2cdc_A 252 DATGA 256 (366)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99974
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.074 Score=50.08 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc----------------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD----------------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.|+ |-+|.++++.|...|-.++++++...-.... .+......-.++.+..
T Consensus 16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~ 94 (640)
T 1y8q_B 16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHD 94 (640)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEES
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4579999995 7899999999999996689988764211100 0011112234555666
Q ss_pred ccCCc-----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 86 DVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 86 d~~~~-----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
++.+. .+.++|+||.+.. |...-..+-++|.+.++.+|+.++.+.+
T Consensus 95 ~i~~~~~~~~~~~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iPlI~~g~~G~~ 145 (640)
T 1y8q_B 95 SIMNPDYNVEFFRQFILVMNALD-----------------NRAARNHVNRMCLAADVPLIESGTAGYL 145 (640)
T ss_dssp CTTSTTSCHHHHTTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTE
T ss_pred ccchhhhhHhhhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEeccc
Confidence 66432 2457999998763 2222345677888888888877665533
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0087 Score=53.12 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC---c--ccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE---P--LLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~--~~~~~d~vi~~ 101 (343)
..+.+|||+||+|-+|...++.+...| .+|+++++. .+.+.+..+ .. -.++..+-.+ . ...++|+||++
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~~~--~~~~~~~~l-Ga--~~v~~~~~~~~~~~~~~~~g~D~vid~ 255 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVCSQ--DASELVRKL-GA--DDVIDYKSGSVEEQLKSLKPFDFILDN 255 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECG--GGHHHHHHT-TC--SEEEETTSSCHHHHHHTSCCBSEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCh--HHHHHHHHc-CC--CEEEECCchHHHHHHhhcCCCCEEEEC
Confidence 457899999999999999999999999 888887742 222222222 11 1122211111 0 12479999999
Q ss_pred cC
Q 019309 102 AC 103 (343)
Q Consensus 102 a~ 103 (343)
+|
T Consensus 256 ~g 257 (375)
T 2vn8_A 256 VG 257 (375)
T ss_dssp SC
T ss_pred CC
Confidence 87
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.02 Score=49.10 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=47.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++|+|+| .|-+|+.+++.|...| .+|++++|... ....... .+++.+..+-.+..+.++|+|+.+..
T Consensus 155 l~g~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~d~~~~----~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLG-LGRTGMTIARTFAALG-ANVKVGARSSA----HLARITE-MGLVPFHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSHH----HHHHHHH-TTCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred CCCCEEEEEc-ccHHHHHHHHHHHHCC-CEEEEEECCHH----HHHHHHH-CCCeEEchhhHHHHhhCCCEEEECCC
Confidence 3679999999 5999999999999999 89999998431 1111111 13443332222334568999999875
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.02 Score=48.09 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=33.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++++|+|+++.+|+.++..|++.| .+|+++.+.
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~g-AtVtv~h~~ 193 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAG-ATVSVCHIK 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCC
Confidence 378999999999999999999999999 899998763
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0038 Score=54.16 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=46.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC---cccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE---PLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~d~vi~~a~ 103 (343)
..+.+|||+||+|-+|...++.+...| .+|+++.+.. +.+.+.++ ... .++..+-.+ ....++|+||.+.|
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~~~~--~~~~~~~l-Ga~--~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTASKR--NHAFLKAL-GAE--QCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEECHH--HHHHHHHH-TCS--EEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeccc--hHHHHHHc-CCC--EEEeCCCcchhhhhccCCCEEEECCC
Confidence 467899999999999999999999999 7888887521 12222222 211 122221111 23357999999986
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.17 Score=42.96 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=56.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEE-EEecCCCCCccchhhhcCCCceEEEEcccCCc-ccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~d~vi~~a~~ 104 (343)
...++|+|.|+||-.|+.+++.|++.| ++++ .+..... .+. ..++.++. ++.+. .-.++|+++.+.-+
T Consensus 5 ~~~~~VaVvGasG~~G~~~~~~l~~~g-~~~v~~VnP~~~--g~~------i~G~~vy~-sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 5 NRETRVLVQGITGREGQFHTKQMLTYG-TKIVAGVTPGKG--GME------VLGVPVYD-TVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCT--TCE------ETTEEEES-SHHHHHHHSCCSEEEECCCH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHcC-CeEEEEECCCCC--Cce------ECCEEeeC-CHHHHhhcCCCCEEEEecCH
Confidence 456899999999999999999999998 8754 4433210 010 12344432 22221 11268999977521
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCCe-EEEEeC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTST 144 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r-~i~~SS 144 (343)
..+..+++.|.+.|++ +|.+++
T Consensus 75 ------------------~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 75 ------------------PAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp ------------------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred ------------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 1245688888899996 555554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0047 Score=54.55 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccC--CcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT--EPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|+|+ |-+|..+++.|...| .+|++++|+... .+.+..... ..+.....+.. ...+.++|+||++++.
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~G-a~V~v~dr~~~r-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLG-AQVQIFDINVER-LSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCHHH-HHHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 3489999998 999999999999999 799999984321 111222211 12222211111 1233479999999864
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.03 Score=47.90 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=42.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|.+||-++| .|.+|..+++.|++.| |+|++++|+..... .+ ...+... ++-......++|+||-|.
T Consensus 4 Ms~kIgfIG-LG~MG~~mA~~L~~~G-~~V~v~dr~~~~~~----~l-~~~G~~~--~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 4 MSEKIAFLG-LGNLGTPIAEILLEAG-YELVVWNRTASKAE----PL-TKLGATV--VENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEC-------C----TT-TTTTCEE--CSSGGGGCCTTCEEEECC
T ss_pred CCCcEEEEe-cHHHHHHHHHHHHHCC-CeEEEEeCCHHHHH----HH-HHcCCeE--eCCHHHHHhcCCceeeec
Confidence 456899998 8999999999999999 99999998543322 11 1123332 222223445789999876
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.027 Score=47.58 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEE-cccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR-HDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++++|+|+ |-.|+.++..|.+.|..+|+++.|.. +....+.. .+.... .|+.+ + ++|+||++..
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~----~ka~~La~--~~~~~~~~~l~~--l-~~DivInaTp 187 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNP----EKTSEIYG--EFKVISYDELSN--L-KGDVIINCTP 187 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCH----HHHHHHCT--TSEEEEHHHHTT--C-CCSEEEECSS
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCH----HHHHHHHH--hcCcccHHHHHh--c-cCCEEEECCc
Confidence 35789999996 78899999999999933899999843 22222221 222222 23333 4 8999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.013 Score=50.70 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
..|+|.|+| .|.+|..+++.|.+.| ++|++++|+. +....+.. .++... .|+ ...+.++|+||-+.
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~----~~~~~l~~-~g~~~~-~~~-~e~~~~aDvVi~~v 95 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAG-YALQVWNRTP----ARAASLAA-LGATIH-EQA-RAAARDADIVVSML 95 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTT-CEEEEECSCH----HHHHHHHT-TTCEEE-SSH-HHHHTTCSEEEECC
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCC-CeEEEEcCCH----HHHHHHHH-CCCEee-CCH-HHHHhcCCEEEEEC
Confidence 458999998 7999999999999999 9999998842 22222222 233322 111 22345789999876
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.025 Score=47.27 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=33.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..|++++|+|+++.+|+.++..|++.| .+|+++.+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~g-AtVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRN-YTVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 478999999999999999999999999 999998763
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=51.64 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
..+.+|||+||+|-+|...++.+...| .+|+++.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G-a~Vi~~~ 196 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG-YIPIATC 196 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 467899999999999999999999999 7888875
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=52.17 Aligned_cols=72 Identities=21% Similarity=0.115 Sum_probs=47.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEc----ccCCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRH----DVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~d~vi~~a 102 (343)
..+.+|||+|+ |-+|...++.+...| .+|++++++... .+.+..+ ... .++.. |+.+....++|+||.++
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~G-a~Vi~~~~~~~~-~~~~~~l-Ga~--~v~~~~~~~~~~~~~~~~~D~vid~~ 251 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSRK-REDAMKM-GAD--HYIATLEEGDWGEKYFDTFDLIVVCA 251 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSSTT-HHHHHHH-TCS--EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCCHHH-HHHHHHc-CCC--EEEcCcCchHHHHHhhcCCCEEEECC
Confidence 36789999999 999999999999999 789999875432 2222322 211 22221 11111114799999999
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
|.
T Consensus 252 g~ 253 (360)
T 1piw_A 252 SS 253 (360)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.016 Score=50.94 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=31.3
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.++|+.+|+|.|+| .|.+|..+++.|.+.| ++|++++|+
T Consensus 16 ~~~Mm~~mkIgiIG-lG~mG~~~A~~L~~~G-~~V~v~dr~ 54 (358)
T 4e21_A 16 ENLYFQSMQIGMIG-LGRMGADMVRRLRKGG-HECVVYDLN 54 (358)
T ss_dssp ------CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred chhhhcCCEEEEEC-chHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 34566789999999 8999999999999999 999999884
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.12 Score=38.62 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=55.1
Q ss_pred hhccCCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEE
Q 019309 24 KFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 24 ~~~~~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
.++...++|.|.|+| |-+|..+++.|.+.| ++|+.+.... ..+.. .++..+ .++.+- -..+|.++-
T Consensus 8 ~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vnp~~--~~~~i------~G~~~~-~sl~el-~~~vDlavi 76 (140)
T 1iuk_A 8 AYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPRF--QGEEL------FGEEAV-ASLLDL-KEPVDILDV 76 (140)
T ss_dssp HHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGGG--TTSEE------TTEECB-SSGGGC-CSCCSEEEE
T ss_pred HHHcCCCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeCCCc--ccCcC------CCEEec-CCHHHC-CCCCCEEEE
Confidence 333345789999999 899999999999999 8877664320 01111 123222 122221 126898887
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+... .....+++.|.+.|++.+.+.+
T Consensus 77 ~vp~------------------~~~~~v~~~~~~~gi~~i~~~~ 102 (140)
T 1iuk_A 77 FRPP------------------SALMDHLPEVLALRPGLVWLQS 102 (140)
T ss_dssp CSCH------------------HHHTTTHHHHHHHCCSCEEECT
T ss_pred EeCH------------------HHHHHHHHHHHHcCCCEEEEcC
Confidence 7521 1234567778888885444443
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.019 Score=50.10 Aligned_cols=95 Identities=8% Similarity=0.129 Sum_probs=56.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEc-ccC------------C--cccCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRH-DVT------------E--PLLIE 94 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~------------~--~~~~~ 94 (343)
+||.|.|+ |.+|+.+++.|.++...+++++.-........... ..++..+.. |.. + ..+.+
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~---~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~ 77 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH---RRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT 77 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH---HTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH---hcCcceecCcCHHHHhcccccccccCHhHhhcC
Confidence 58999999 99999999999987645666654321111111111 112223221 110 0 11226
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
+|+||-|.+... .......+.+.|+++|..|+..
T Consensus 78 vDvV~~aTp~~~------------------s~~~a~~~~~aG~kvV~~sa~~ 111 (340)
T 1b7g_O 78 SDIVVDTTPNGV------------------GAQYKPIYLQLQRNAIFQGGEK 111 (340)
T ss_dssp CSEEEECCSTTH------------------HHHHHHHHHHTTCEEEECTTSC
T ss_pred CCEEEECCCCch------------------hHHHHHHHHHcCCeEEEeCCCC
Confidence 899999875321 2345566778898989888863
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=95.44 E-value=0.058 Score=46.86 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=27.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
|.+||.|.|+ |.||+.+++.|.+++..+|+++.
T Consensus 2 m~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~ 34 (337)
T 3e5r_O 2 GKIKIGINGF-GRIGRLVARVALQSEDVELVAVN 34 (337)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEE
T ss_pred CceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEE
Confidence 3469999999 99999999999987546666664
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0075 Score=54.11 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=46.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|+|+|+ |-+|+.+++.|...| . +|++++|..... +.+...+ +.+.+..+-....+.++|+||.+.+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G-~~~V~v~~r~~~ra-~~la~~~---g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRG-VRAVLVANRTYERA-VELARDL---GGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHC-CSEEEEECSSHHHH-HHHHHHH---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCC-CCEEEEEeCCHHHH-HHHHHHc---CCceecHHhHHHHhcCCCEEEEccCC
Confidence 47899999997 999999999999999 6 899998843111 1122211 22322111111234579999999763
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.023 Score=48.89 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|+|+|.| .|-+|..++..|. .| ++|++++|.
T Consensus 1 M~mkI~IiG-aGa~G~~~a~~L~-~g-~~V~~~~r~ 33 (307)
T 3ego_A 1 MSLKIGIIG-GGSVGLLCAYYLS-LY-HDVTVVTRR 33 (307)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHH-TT-SEEEEECSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHh-cC-CceEEEECC
Confidence 468999998 7999999999999 88 999999984
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.017 Score=49.68 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=29.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
++|+|.|+| .|.+|..++..|.+.| ++|++++|+
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGG-NDVTLIDQW 35 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCC-CcEEEEECC
Confidence 347999999 5999999999999999 999999884
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.12 Score=45.41 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhc--CCCeEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVAD 61 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~--g~~~V~~~~ 61 (343)
.+||.|.|+ |.||+.+++.|.++ +..+|+++.
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaIn 35 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAIN 35 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 369999999 99999999999987 435666654
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.13 Score=44.62 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=26.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHh---cCCCeEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLME---NEKNEVIVAD 61 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~---~g~~~V~~~~ 61 (343)
.+||.|.|+ |++|+.+++.|.+ ++..+|.++.
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~ 36 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAIN 36 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEE
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 369999998 9999999999998 6436666654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0078 Score=53.23 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
.+.+|||+|+ |-+|...++.+...| .+|++++++.... +.....+.. -.++ |..+. ...++|+||+++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~~-~~~~~~lGa--~~v~--~~~~~~~~~~~~~~~D~vid~~ 259 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG-SKVTVISTSPSKK-EEALKNFGA--DSFL--VSRDQEQMQAAAGTLDGIIDTV 259 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGGH-HHHHHTSCC--SEEE--ETTCHHHHHHTTTCEEEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHHhcCC--ceEE--eccCHHHHHHhhCCCCEEEECC
Confidence 6789999996 999999999999999 8999988743221 111111111 1222 22221 123799999999
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
|.
T Consensus 260 g~ 261 (366)
T 1yqd_A 260 SA 261 (366)
T ss_dssp SS
T ss_pred Cc
Confidence 74
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.023 Score=48.47 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=47.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++|+|+| .|-+|+.+++.|...| .+|++++|... ...... ..+++.+..+-.+..+.++|+|+.+..
T Consensus 154 ~g~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~dr~~~----~~~~~~-~~g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 154 HGANVAVLG-LGRVGMSVARKFAALG-AKVKVGARESD----LLARIA-EMGMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSHH----HHHHHH-HTTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEECCHH----HHHHHH-HCCCeecChhhHHHHhcCCCEEEECCC
Confidence 679999999 6999999999999999 89999998431 111111 123444332222334568999999873
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0098 Score=50.63 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=42.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|.|+| .|.+|..+++.|.+.| ++|++++|+... ...... .++.. .+-......++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr~~~~----~~~~~~-~g~~~--~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAG-CSVTIWNRSPEK----AEELAA-LGAER--AATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSGGG----GHHHHH-TTCEE--CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CeEEEEcCCHHH----HHHHHH-CCCee--cCCHHHHHhcCCEEEEEc
Confidence 7999999 7999999999999999 999999985322 111111 12322 111112234689999876
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.029 Score=47.07 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=32.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+++++|+|+++.+|+.++..|+..| .+|+++.+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs 193 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAK-ATVTTCHR 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeC
Confidence 378999999999999999999999999 89999876
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0064 Score=54.01 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=46.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEccc--CCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV--TEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~d~vi~~a~~ 104 (343)
.+++|+|+|+ |-+|..+++.+...| .+|++++|+... .+.+...+.. .+.....+. .+..+.++|+||.+++.
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~G-a~V~~~d~~~~~-l~~~~~~~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMG-ATVTVLDINIDK-LRQLDAEFCG-RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHHHHHTTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCHHH-HHHHHHhcCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 5789999997 999999999999999 799999874321 1112221211 111111111 11233479999998863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 343 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-119 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-87 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-80 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 8e-70 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-66 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-64 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-63 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-62 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-62 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-56 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 3e-56 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 3e-56 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 4e-56 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-49 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-47 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 6e-45 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-37 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 6e-31 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 7e-29 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-27 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 4e-23 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-21 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 6e-19 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 8e-19 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 1e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 3e-15 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 7e-13 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 9e-11 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 3e-09 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 8e-08 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 1e-04 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 0.001 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 345 bits (887), Expect = e-119
Identities = 200/307 (65%), Positives = 242/307 (78%), Gaps = 1/307 (0%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
RIL+TGGAGF+GSHL DKLM + +EV V DN+FTG K N++ WIGH FELI HDV EP
Sbjct: 3 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 62 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 121
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
P +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM++
Sbjct: 122 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 181
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGE 270
+DGRVVSNFI QAL+GEPLTV G+QTR+F YVSD+V+GL+ LM + PVN+GNP E
Sbjct: 182 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 241
Query: 271 FTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLME 330
T+LE A+ +K L+ G EI+ + DDP++RKPDI KAK +LGWEP V L +GL
Sbjct: 242 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI 301
Query: 331 EDFRSRL 337
FR L
Sbjct: 302 HYFRKEL 308
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 264 bits (676), Expect = 3e-87
Identities = 84/338 (24%), Positives = 140/338 (41%), Gaps = 34/338 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVT 88
M+IL+TGGAGFIGS +V +++N ++ V+ D + G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 89 EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 137
+ I D + HLA + P I+TN++GT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 138 ------RILLTSTSEVYGDPLIHPQPET-----YWGNVNPIGVRSCYDEGKRVAETLMFD 186
R ST EVYGD + E + S Y K ++ L+
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 187 YHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSD 246
+ R +G+ + N YGP + +++ I AL G+PL + G Q R + YV D
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238
Query: 247 MVDGLIRLMEGENTG-PVNIGNPGEFTMLELAETV--------KELINPGIEIKMVENTP 297
L ++ G NIG E L++ T+ + + +I V + P
Sbjct: 239 HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRP 298
Query: 298 DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335
R+ D K LGW+P G+ E + +
Sbjct: 299 GHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 245 bits (626), Expect = 4e-80
Identities = 89/319 (27%), Positives = 142/319 (44%), Gaps = 21/319 (6%)
Query: 30 MRILVTGGAGFIGSHLVDKLMEN-----EKNEVIVADNY-FTGSKDNLKKWIGHPRFELI 83
MR+LVTGGAGFIGSH V +L+ +EVIV D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 84 RHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 137
D+ + L+ D I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 138 RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRI 197
R++ ST++VYG E+ +P+ S Y K ++ + YHR +G+ +RI
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 198 ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257
R N YGP + + +++ F+ L G L + G R + + D G+ ++ G
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233
Query: 258 ENTGPV-NIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLG 315
G + +IG E T EL + + + ++ V + + D K + LG
Sbjct: 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELG 293
Query: 316 WEPKVKLRDGLPLMEEDFR 334
+ P+V DGL +R
Sbjct: 294 YRPQVSFADGLARTVRWYR 312
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 220 bits (560), Expect = 8e-70
Identities = 75/349 (21%), Positives = 128/349 (36%), Gaps = 56/349 (16%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADN----YFTGSKDNLKKW--IGHPRFELIR 84
L+TG G GS+L + L+E EV + T D++ + +P+F L
Sbjct: 3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 85 HDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 136
D+++ + D++Y+L + +P T + +GTL +L + +G
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121
Query: 137 ---ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
R STSE+YG PQ ET P RS Y K A + +Y +G+
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 194 QIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDGL 251
+FN PR R ++ IA +G R + + D V
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236
Query: 252 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD------------- 298
+++ E I ++++ + E + + +
Sbjct: 237 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 299 ----------DPRQRKP--------DISKAKELLGWEPKVKLRDGLPLM 329
DPR +P D +KA E LGW+P++ LR+ + M
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEM 345
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 210 bits (534), Expect = 2e-66
Identities = 66/326 (20%), Positives = 119/326 (36%), Gaps = 33/326 (10%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ R+ + G G +GS + +L + + +V +D L + +
Sbjct: 1 AKQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRT-----RDELNLLDSRAVHDFFASE- 53
Query: 88 TEPLLIEVDQIYHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTS 145
+DQ+Y A + P I N++ N++ A + ++L +S
Sbjct: 54 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 107
Query: 146 EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYG 205
+Y P E+ Y K L Y+RQ+G R N YG
Sbjct: 108 CIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 167
Query: 206 PRMNIDDGR-------VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
P N + A A + + V GT R F +V DM I +ME
Sbjct: 168 PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 227
Query: 259 NT----------GPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDIS 308
+ +N+G + T+ ELA+T+ +++ + + PD ++ D++
Sbjct: 228 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 287
Query: 309 KAKELLGWEPKVKLRDGLPLMEEDFR 334
+ + LGW ++ L GL + F
Sbjct: 288 RLHQ-LGWYHEISLEAGLASTYQWFL 312
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 204 bits (518), Expect = 8e-64
Identities = 76/321 (23%), Positives = 124/321 (38%), Gaps = 18/321 (5%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT 88
I+VTGGAGFIGS+ V + N + V V D + I R EL+ D+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62
Query: 89 EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
+ L++ D I H A + +P I TN IGT +L A++ R S
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122
Query: 144 TSEVYGD-------PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIR 196
T EVYGD P P + S Y K ++ ++ + R G++
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKAT 182
Query: 197 IARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256
I+ N YGP +I+ + + I L G + G R + + +D G+ ++
Sbjct: 183 ISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILT 240
Query: 257 GENTGPVNIGNPGEFTML--ELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELL 314
G + L ++++ P V + + D SK ++ L
Sbjct: 241 KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDEL 300
Query: 315 GWEPKV-KLRDGLPLMEEDFR 334
GW P+ +GL + +
Sbjct: 301 GWTPQFTDFSEGLEETIQWYT 321
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 202 bits (515), Expect = 2e-63
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 28/335 (8%)
Query: 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW------IG 76
+ L+TG AGFIGS+L++ L++ +V+ DN+ TG + NL +
Sbjct: 10 KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 68
Query: 77 HPRFELIRHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 131
F+ I+ D+ D + H A S +P+ + TN+ G LNML
Sbjct: 69 WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 128
Query: 132 AKRVGARILL-TSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 190
A+ + ++S YGD P+ E G S Y K V E + R
Sbjct: 129 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKP-----LSPYAVTKYVNELYADVFSRC 183
Query: 191 HGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248
+G R FN +G R + + V+ + + ++G+ + + G +R FCY+ + V
Sbjct: 184 YGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTV 243
Query: 249 DGLIRLME---GENTGPVNIGNPGEFTMLELAETVKELINPG-----IEIKMVENTPDDP 300
+ NI G ++ +L +++ + E + D
Sbjct: 244 QANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDV 303
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335
R DISKA +LLG+ PK + G+ L +
Sbjct: 304 RHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIM 338
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 201 bits (511), Expect = 1e-62
Identities = 82/330 (24%), Positives = 142/330 (43%), Gaps = 16/330 (4%)
Query: 19 PLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGH 77
L +++ S N++I +TG GFI SH+ +L E + VI +D +++ + +
Sbjct: 4 ELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASDWK---KNEHMTEDMFC 59
Query: 78 PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTI----KTNVIGTLNMLGLAK 133
F L+ V E L + + H+ A+ + N + + NM+ A+
Sbjct: 60 DEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR 119
Query: 134 RVG-ARILLTSTSEVYG--DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 190
G R S++ +Y L + P + + K E L Y++
Sbjct: 120 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 179
Query: 191 HGIQIRIARIFNTYGPRMNIDDGR---VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247
GI+ RI R N YGP GR + + + G QTRSF ++ +
Sbjct: 180 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDEC 239
Query: 248 VDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDI 307
V+G++RL + + PVNIG+ +M E+AE V + I + P+ R R D
Sbjct: 240 VEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDN 298
Query: 308 SKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
+ KE LGW P ++L++GL + + ++
Sbjct: 299 NLIKEKLGWAPNMRLKEGLRITYFWIKEQI 328
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 199 bits (506), Expect = 4e-62
Identities = 74/327 (22%), Positives = 128/327 (39%), Gaps = 35/327 (10%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDV 87
MR+LVTGG+G+IGSH +L++N ++VI+ DN + L + +G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59
Query: 88 TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 139
L+ +D + H A + P++ NV GTL ++ +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 140 LLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIQIRIA 198
+ +S++ VYGD P E++ +S Y + K + E ++ D + I +
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 199 RIFNTYGPRMNIDDG-------RVVSNFIAQAL--RGEPLTV------QKPGTQTRSFCY 243
R FN G + D G + +IAQ R + L + + GT R + +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 244 VSDMVDGLIRLM----EGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDD 299
V D+ DG + M N+G ++L++ + + D
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 300 PRQRKPDISKAKELLGWEPKVKLRDGL 326
D SKA L W L +
Sbjct: 296 LPAYWADASKADRELNWRVTRTLDEMA 322
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 185 bits (470), Expect = 1e-56
Identities = 79/337 (23%), Positives = 127/337 (37%), Gaps = 33/337 (9%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSKDNLKKWIGHPRFELIRHDVTE 89
++L+TGG GF+GS+L + ++IV DN G+ DNL FE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 90 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA--KRVGARIL 140
+ D +HLA + NP + NV GTLN+L I+
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVN-----------PIGVRSCYDEGKRVAETLMFDYHR 189
+ST++VYGD + ET + S Y K A+ M DY R
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180
Query: 190 QHGIQIRIARIFNTYGPRMNIDDGRVVSNFI------AQALRGEPLTVQKPGTQTRSFCY 243
G+ + R + YG R + + + +P T+ G Q R +
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240
Query: 244 VSDMVDGLIRLMEGENTGP-----VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD 298
DM+ + + + ++LEL + +++ N + +
Sbjct: 241 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRES 300
Query: 299 DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRS 335
D R DI K + W PKV +DG+ M + S
Sbjct: 301 DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (468), Expect = 3e-56
Identities = 65/339 (19%), Positives = 117/339 (34%), Gaps = 47/339 (13%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADN----YFTGSKDNLKKWIG---HPRFELIR 84
L+TG G GS+L + L+E EV + TG ++L K +L
Sbjct: 4 ALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 62
Query: 85 HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 136
D+T+ + + +IY+L + T + +GTL +L K G
Sbjct: 63 GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 122
Query: 137 ---ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 193
+ STSE+YG PQ ET P RS Y K A ++ ++ + +
Sbjct: 123 INSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNL 177
Query: 194 QIRIARIFNTYGPRMNIDDG--RVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL 251
+FN PR + ++ + L R + + D V+ +
Sbjct: 178 FAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAM 237
Query: 252 IRLMEGENTGPVNIGNPGEFTM---------------------LELAETVKELINPGIEI 290
+++ + I ++ KE + +
Sbjct: 238 WLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTV 297
Query: 291 KMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM 329
+ P + + D +KAK+ L W+P+V + + M
Sbjct: 298 DLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREM 336
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 183 bits (465), Expect = 3e-56
Identities = 58/323 (17%), Positives = 117/323 (36%), Gaps = 22/323 (6%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-TGSKDNLKKWIGHPRFELIRHDVTE 89
LVTG G G++L L+E V + ++ L++ + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60
Query: 90 PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARIL 140
+ + ++Y+LA + PV T + +G ++L ++ R
Sbjct: 61 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120
Query: 141 LTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARI 200
STSE++G Q E P RS Y K + +Y G+ +
Sbjct: 121 QASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGIL 175
Query: 201 FNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258
FN P I+ +V L + R + + D V+ + +++ +
Sbjct: 176 FNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235
Query: 259 NTGPVNIGNPGEFTMLELAETVKELINPG----IEIKMVENTPDDPRQRKPDISKAKELL 314
+ T+ ++ + E + ++I P + + +KA+ +L
Sbjct: 236 KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVL 295
Query: 315 GWEPKVKLRDGLPLMEEDFRSRL 337
GW+P+ L + + +M E R+
Sbjct: 296 GWKPRTSLDELIRMMVEADLRRV 318
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 184 bits (467), Expect = 4e-56
Identities = 67/330 (20%), Positives = 123/330 (37%), Gaps = 37/330 (11%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDVTE 89
+LVTGGAG+IGSH V +L+EN + +VADN + D++ + + D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 62
Query: 90 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 142
+E +D + H A + P++ N++GT+ +L L ++ +
Sbjct: 63 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 122
Query: 143 STS-EVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIQIRIAR 199
S+S VYGD P P+G + Y K E ++ D + + + I R
Sbjct: 123 SSSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181
Query: 200 IFNTYGPRMNIDDG--------RVVSNFIAQAL-RGEPLTVQKPGTQTRSFCYVSDMVDG 250
FN G + G ++ A+ R E L + +R + D +
Sbjct: 182 YFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHV 241
Query: 251 LIRLMEGENTGP--------------VNIGNPGEFTMLELAETVKELINPGIEIKMVENT 296
+ N+G+ T+ E+ + + K+
Sbjct: 242 VDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR 301
Query: 297 PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
D +AK L W+ ++++ D
Sbjct: 302 AGDVLNLTAKPDRAKRELKWQTELQVEDSC 331
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (418), Expect = 5e-49
Identities = 70/331 (21%), Positives = 124/331 (37%), Gaps = 39/331 (11%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--------KWIGHPRFEL 82
++LVTGGAG+IGSH V +L+E +V DN+ + + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 83 IRHDVTEPLLIEVDQI-------YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 135
D+ + ++ H A + P+ + N+ GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 136 GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDY-HRQHGIQ 194
G + L+ S+S +PQ G + Y + K E ++ D
Sbjct: 123 GVKNLVFSSSATVYG---NPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 195 IRIARIFNTYGPRMNIDDG-------RVVSNFIAQAL--RGEPLTV------QKPGTQTR 239
+ R FN G + G + +++Q R E L V + GT R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 240 SFCYVSDMVDGLIRLM----EGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN 295
+ +V D+ G I + E N+G +++L++ + +++ I K+V
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 296 TPDDPRQRKPDISKAKELLGWEPKVKLRDGL 326
D + S A+E LGW + L
Sbjct: 300 REGDVAACYANPSLAQEELGWTAALGLDRMC 330
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 163 bits (411), Expect = 1e-47
Identities = 70/367 (19%), Positives = 127/367 (34%), Gaps = 68/367 (18%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS------------------KD 69
S+MR+LV GGAG+IGSH V L+ + + V++ D+ D
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 70 NLKKWIGHPRFELIRHDVTEPLLIE--------VDQIYHLACPASPIFYKYNPVKTIKTN 121
K L DV + +D + H+ + +P+K N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGV---RSCYDEGKR 178
V+G L +L ++ S+S T ++ S Y E K
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDG-------RVVSNFIAQALR------ 225
+AE ++ D +GI+ R FN G + D G ++ + + +
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240
Query: 226 ----------GEPLTV------QKPGTQTRSFCYVSDMVDGLIRLME----------GEN 259
+ + + GT R + +V D+ I ++ +
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300
Query: 260 TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319
N+G +++ E+ E ++ I ++ DP KA+E+LGW+PK
Sbjct: 301 FSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPK 360
Query: 320 VKLRDGL 326
+ +
Sbjct: 361 YDTLEAI 367
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 154 bits (390), Expect = 6e-45
Identities = 61/324 (18%), Positives = 111/324 (34%), Gaps = 31/324 (9%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADN----YFTGSKDNL---KKWIGHPRFELI 83
L+TG G GS+L + L+ + EV + T +++ + +L
Sbjct: 3 IALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 84 RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 136
D+T+ + D++Y+LA + P T G L +L +
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 137 AR-----ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 191
+ S PQ ET P RS Y K A +Y +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAY 176
Query: 192 GIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249
G+ +FN PR + ++ + + +R + + D V+
Sbjct: 177 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 236
Query: 250 GLIRLMEGENTGPVNIGNPGEFTMLELAETVKELIN----PGIEIKMVENTPDDPRQRKP 305
+ +++ E + T+ E + + +EI P + +
Sbjct: 237 AMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG 296
Query: 306 DISKAKELLGWEPKVKLRDGLPLM 329
D SKAKE+LGW+P+V + +M
Sbjct: 297 DASKAKEVLGWKPQVGFEKLVKMM 320
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 135 bits (339), Expect = 1e-37
Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 38/342 (11%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT- 88
MR+L+ G GFIG+HL ++L+ + EV D D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 89 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGV--RSCYDEGKRVAETLMFDYHRQHGIQIRIARIF 201
TSEVYG E + + R Y K++ + +++ Y + G+Q + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 202 NTYGPRMNID------DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255
N GPR++ R ++ I + G P+ + G Q R F + D ++ L R++
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236
Query: 256 EGENTGPVN-----IGNPGEFTMLELAETVKELINPGIEIKMVENTP------------- 297
E E ++ EL E +
Sbjct: 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGK 296
Query: 298 --DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
D RKP I A L WEPK+ +++ + + F +
Sbjct: 297 GYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 118 bits (294), Expect = 6e-31
Identities = 57/337 (16%), Positives = 104/337 (30%), Gaps = 25/337 (7%)
Query: 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFEL 82
+ F+Q R+ VTG GF G L L V + +
Sbjct: 3 NSFWQ-GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQS 60
Query: 83 IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL---- 131
D+ + + ++H+A PV+T TNV+GT+ +L
Sbjct: 61 EIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV 120
Query: 132 AKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV---AETLMFDYH 188
+ + + + + G +P E +
Sbjct: 121 GGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANY 180
Query: 189 RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248
QHG + R N G D R+V + + + +P+ ++ P + +
Sbjct: 181 GQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLS 239
Query: 249 DGLIRLMEGENTGPVNIG-------NPGEFTMLELAETVKELINPGIEIKMVENT-PDDP 300
L+ + G + + + E + + G ++ N P +
Sbjct: 240 GYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEA 299
Query: 301 RQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337
K D SKAK LGW P+ L L + ++ L
Sbjct: 300 HYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL 336
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 111 bits (276), Expect = 7e-29
Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 11/302 (3%)
Query: 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL 91
I+VTGGAGFIGS++V L + +++V DN G+K + + + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 92 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP 151
+ + A L R
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE--IPFLYASSAA 118
Query: 152 LIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID 211
+ + + + Y K + + + + QI R FN YGPR
Sbjct: 119 TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK 178
Query: 212 DGRVVSNFIAQALRGEPLTVQKPG---TQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNP 268
F + + R F YV D+ D + +E +G N+G
Sbjct: 179 GSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG 238
Query: 269 GEFTMLELAETVKELINPGIEIKMVENT----PDDPRQRKPDISKAKELLGWEPKVKLRD 324
+ +A+ G +I+ + + D++ + +P + +
Sbjct: 239 RAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297
Query: 325 GL 326
G+
Sbjct: 298 GV 299
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 107 bits (267), Expect = 3e-27
Identities = 45/323 (13%), Positives = 100/323 (30%), Gaps = 29/323 (8%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHP----RFELIRHD 86
+LVTG GF+ SH+V++L+E+ +V NL+K + D
Sbjct: 13 LVLVTGANGFVASHVVEQLLEH-GYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVED 70
Query: 87 VTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
+ + + + +A AS + + + + + GTLN L A + T
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130
Query: 145 SEVYGDPLIHPQPETYWGNV-----------------NPIGVRSCYDEGKRVAETLMFDY 187
S + P E + + +P Y K AE + +
Sbjct: 131 SSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKF 190
Query: 188 HRQHGIQIRIARIFNT--YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245
++ + + G + + ++ +L ++ + +
Sbjct: 191 MDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAV 250
Query: 246 DMVDGLIRLME-GENTGPVNIGNPGEFTMLELAETVKELI-NPGIEIKMVENTPDDPRQR 303
D+ + + + G G F + T ++L + + D +
Sbjct: 251 DIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFD 310
Query: 304 KPDISKAKELLGWEPKVKLRDGL 326
+ + LG + + +
Sbjct: 311 TAPSLEILKSLGRPGWRSIEESI 333
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 97.0 bits (239), Expect = 4e-23
Identities = 69/366 (18%), Positives = 110/366 (30%), Gaps = 63/366 (17%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK----------------- 72
R++V GG G+ G L + EV + DN D+
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 73 -KWIGHPRFELIRHDVTEPLLIE----------VDQIYHLACPASPIFYKYNPVKTIKTN 121
K + EL D+ + + V + + V T N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 122 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNV----------NPIGVRS 171
VIGTLN+L K G L + + E + + P S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD---------------GRVV 216
Y K + + GI+ YG + + + G +
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 217 SNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP---VNIGNPGEFTM 273
+ F QA G PLTV G QTR + + D V + + V +F++
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 274 LELAETVKELINP-GIEIKMVENT----PDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 328
ELA V + + G+++K + + +K E LG EP L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDS 359
Query: 329 MEEDFR 334
+
Sbjct: 360 LLNFAV 365
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 89.9 bits (221), Expect = 2e-21
Identities = 47/304 (15%), Positives = 96/304 (31%), Gaps = 40/304 (13%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT--GSKDNLKKWIGHPRFELIRHDV 87
M+IL+TG G +G + +L + + EVI D + + K+ +
Sbjct: 2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP------- 53
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147
+ + + A + + K N IG N+ A VGA I+ ST V
Sbjct: 54 --------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYV 105
Query: 148 YGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPR 207
+ P E N ++ + + + + I R YG
Sbjct: 106 FDGEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDG 156
Query: 208 MNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGN 267
N + L+ Q + D+ ++++++ +N G +
Sbjct: 157 NNFVKTMINLGKTHDELKV-------VHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTC 209
Query: 268 PGEFTMLELAETVKELINPGIEIKMVE----NTPDD-PRQRKPDISKAKELLGWEPKVKL 322
G + + A + L +++ P P+ + G + +
Sbjct: 210 KGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EW 268
Query: 323 RDGL 326
++ L
Sbjct: 269 KESL 272
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 83.7 bits (205), Expect = 6e-19
Identities = 27/279 (9%), Positives = 70/279 (25%), Gaps = 33/279 (11%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS---KDNLKKWIGHPRFELI 83
R+L+ GG G+IG +V+ + + V S K + + +LI
Sbjct: 1 DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59
Query: 84 RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
+ + + ++ + + + + + + + L S
Sbjct: 60 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
+ D + H + + + I
Sbjct: 115 EFGMDPDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP- 262
G G + + + + G + D+ I+ ++ T
Sbjct: 160 AGYF----AGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK 215
Query: 263 --VNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDD 299
+ E+ + + L + + + D
Sbjct: 216 TMYIRPPMNILSQKEVIQIWERLS--EQNLDKIYISSQD 252
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 83.3 bits (204), Expect = 8e-19
Identities = 31/273 (11%), Positives = 72/273 (26%), Gaps = 38/273 (13%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK----KWIGHPRFELI 83
S RIL+ G G+IG H+ ++ + + T S ++ K + ++
Sbjct: 2 SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV 60
Query: 84 RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
+D L + + V +++ + R +
Sbjct: 61 HGS--------IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSE 112
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
+ ++ + + GI
Sbjct: 113 FGNDVDNVHAVEPAKSVFEVKAK-----------------VRRAIEAEGIPYTYVSSNCF 155
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG-- 261
G + R ++ A + + + G F D+ I+ ++ T
Sbjct: 156 AGYFL-----RSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNK 210
Query: 262 -PVNIGNPGEFTMLELAETVKELINPGIEIKMV 293
++ EL ++ I+ +E V
Sbjct: 211 TLYLRLPANTLSLNELVALWEKKIDKTLEKAYV 243
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 73.3 bits (178), Expect = 1e-15
Identities = 36/262 (13%), Positives = 72/262 (27%), Gaps = 20/262 (7%)
Query: 28 SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
+N+ +LVTG +G G + KL E V K+ + ++ D
Sbjct: 1 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDAD 60
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146
P +D + L + ++P K + I + ++
Sbjct: 61 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 120
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
V G I N + + + V + Y G I R
Sbjct: 121 VAGVKHIVVVGSMGGTNPDH-PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDK 179
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG--PVN 264
G V + + + +D+ + I+ + E +
Sbjct: 180 E-----GGVRELLVGKD--------DELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFD 226
Query: 265 IGNPGEFT---MLELAETVKEL 283
+G+ E T + ++
Sbjct: 227 LGSKPEGTSTPTKDFKALFSQV 248
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 73.1 bits (177), Expect = 3e-15
Identities = 45/313 (14%), Positives = 86/313 (27%), Gaps = 43/313 (13%)
Query: 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE 89
M IL+ G G +G L L +I D + + + + V +
Sbjct: 1 MNILLFGKTGQVGWELQRSL--APVGNLIALDVHSKEFCGDFSN------PKGVAETVRK 52
Query: 90 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149
+ D I + A + + P N + A GA ++ ST V+
Sbjct: 53 ---LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109
Query: 150 DPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN 209
P ET + + ++ K + + R + ++ G
Sbjct: 110 GTGDIPWQETDATSPLNVYGKTKLAGEK------ALQDNCPKHLIFRTSWVYAGKGNNFA 163
Query: 210 IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIR-----LMEGENTGPVN 264
R+ T+ Q + + D L + E G +
Sbjct: 164 KTMLRLAKERQ---------TLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYH 214
Query: 265 IGNPGEFTMLELAETVKELINP-GIEIKMVENTPDD----------PRQRKPDISKAKEL 313
+ G T + A V + GI + + E P + + K +
Sbjct: 215 LVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRN 274
Query: 314 LGWEPKVKLRDGL 326
+ G+
Sbjct: 275 FDLILP-QWELGV 286
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 7e-13
Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 42/234 (17%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ +I + G G G + + ++ EV V + + ++++
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60
Query: 88 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 146
+ + D + L N + G N++ K G ++ +++
Sbjct: 61 VDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGP 206
+ DP P + M R+ G++
Sbjct: 114 LLWDPTKVPPRLQAVTD----------------DHIRMHKVLRESGLKYVAVMP------ 151
Query: 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT 260
I TV G D+ ++R + +
Sbjct: 152 -----------PHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEY 194
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 60.0 bits (144), Expect = 9e-11
Identities = 27/282 (9%), Positives = 64/282 (22%), Gaps = 30/282 (10%)
Query: 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 86
Q I V G G G+ L+ + + ++ P L +
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS---LKGLIAEELQAIPNVTLFQGP 57
Query: 87 VTEP--LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144
+ L+ + + HLA + + ++ AKR G
Sbjct: 58 LLNNVPLMDTLFEGAHLAFINTTSQAGD--------EIAIGKDLADAAKRAGTI------ 103
Query: 145 SEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTY 204
+ + + G + A I+N
Sbjct: 104 ---------QHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNN 154
Query: 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVN 264
+ ++ P P + V + + + + G
Sbjct: 155 FTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRI 214
Query: 265 IGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPD 306
+ +++ + + V+ + + P
Sbjct: 215 ALTFETLSPVQVCAAFSRAL--NRRVTYVQVPKVEIKVNIPV 254
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 3e-09
Identities = 20/255 (7%), Positives = 51/255 (20%), Gaps = 32/255 (12%)
Query: 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELI 83
F N + + G +G G L+ +++E + +
Sbjct: 9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL---------------------IG 47
Query: 84 RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 143
R +T + + Y R+
Sbjct: 48 RRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDY 107
Query: 144 TSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNT 203
+ + S + + E + + R
Sbjct: 108 VLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAK-VEELKFDRYSVFRPGVL 166
Query: 204 YGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263
R G + +L + V +V ++ + +
Sbjct: 167 LCDRQESRPGEWLVRKFFGSLPD--------SWASGHSVPVVTVVRAMLNNVVRPRDKQM 218
Query: 264 NIGNPGEFTMLELAE 278
+ + +L +
Sbjct: 219 ELLENKA--IHDLGK 231
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.8 bits (117), Expect = 8e-08
Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 38/237 (16%)
Query: 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP 90
R+L+ G G G HL+D+++ ++A ++ L + ++
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVIAP-----ARKALAEHPRLDNPVGPLAELLPQ 58
Query: 91 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150
L +D + + + ++ +
Sbjct: 59 LDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK-----------------RALEM 101
Query: 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNI 210
H + G + +G+ Q Q+ IAR +GPR
Sbjct: 102 GARHYLVVSALGADAKSSIFYNRVKGEL-----EQALQEQGWPQLTIARPSLLFGPREEF 156
Query: 211 DDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGN 267
+++ IA+ L G+ + D+ L RL E G + +
Sbjct: 157 RLAEILAAPIARILPGKYHGI-----------EACDLARALWRLALEEGKGVRFVES 202
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 8/116 (6%), Positives = 23/116 (19%), Gaps = 6/116 (5%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV 87
+ +V G G +G L V+ + + + +
Sbjct: 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAET 80
Query: 88 T-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 138
+ ++ + + ++ N G
Sbjct: 81 ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.3 bits (85), Expect = 0.001
Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 16/181 (8%)
Query: 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHD 86
+ +L+ G+GF+ +D L ++ +V VA +K P + D
Sbjct: 1 ATKSVLM-LGSGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDD 58
Query: 87 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL----NMLGLAKRVGA----- 137
+ + P + K +V+ T M+ L +
Sbjct: 59 AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 118
Query: 138 --RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 195
I ++ +++ G P G ++ GV + ++ + LM + ++GI+
Sbjct: 119 MNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAP--MNSKINDPLMKELKEKYGIEC 176
Query: 196 R 196
+
Sbjct: 177 K 177
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 343 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.93 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.9 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.8 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.8 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.79 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.79 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.79 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.78 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.78 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.78 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.78 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.77 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.77 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.77 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.76 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.76 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.76 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.76 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.76 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.76 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.75 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.74 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.74 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.74 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.74 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.73 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.73 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.73 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.73 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.73 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.73 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.73 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.72 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.72 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.72 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.72 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.71 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.71 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.7 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.69 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.69 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.68 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.67 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.67 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.67 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.67 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.66 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.65 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.64 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.63 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.63 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.63 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.63 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.62 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.61 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.6 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.59 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.53 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.53 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.51 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.51 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.46 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.45 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.42 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.26 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.25 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.9 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.31 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.26 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.18 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.18 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.15 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 98.14 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 98.11 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.1 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.99 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.97 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.92 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.91 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.87 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.85 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.82 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.81 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.79 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.79 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.76 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.75 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.75 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.74 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.71 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.67 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.67 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.64 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.61 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.54 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.54 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.53 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.51 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.5 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.45 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.43 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.39 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.32 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.3 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.26 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.23 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.2 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.14 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.12 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.09 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.95 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.94 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.93 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.83 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.8 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.77 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.76 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.75 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.71 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.71 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.7 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.67 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.67 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.66 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.6 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.47 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.46 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.41 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.38 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.3 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.19 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.16 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.11 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.07 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.04 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.0 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.86 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.82 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.8 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.79 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.73 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.65 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.54 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.47 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 95.44 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.41 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.41 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.33 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.31 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.28 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.25 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.23 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.19 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.16 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.13 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.1 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.07 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.97 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.94 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.92 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.88 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.88 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 94.84 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.83 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.78 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.7 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.65 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.57 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.55 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.54 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.48 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.46 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.36 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.34 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.25 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.18 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.13 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.11 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.03 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.02 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.0 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.81 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.74 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 93.63 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.58 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.55 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.43 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.29 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.05 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.05 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.93 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 92.78 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.74 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.73 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.73 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.69 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 92.68 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 92.67 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.66 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.65 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.63 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.56 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.46 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.3 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.28 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.27 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.08 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.06 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.03 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 91.91 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.9 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 91.85 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.69 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.59 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.41 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.37 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.19 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.97 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.7 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 90.67 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.28 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 90.23 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.22 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 89.92 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 89.67 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.64 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 89.6 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 89.5 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.36 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.2 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.94 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.65 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 88.15 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 87.99 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 87.58 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.45 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 87.06 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 86.85 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.61 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.05 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 85.97 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.92 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 85.7 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 85.6 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.54 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.27 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.58 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 84.45 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 84.31 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.05 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.93 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 83.42 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 83.22 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 82.96 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 82.93 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 82.36 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 82.22 | |
| d1m3sa_ | 186 | Hypothetical protein YckF {Bacillus subtilis [TaxI | 82.17 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 81.67 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 80.87 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 80.46 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 80.15 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-55 Score=382.45 Aligned_cols=309 Identities=65% Similarity=1.101 Sum_probs=283.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
+|||||||||||||++|+++|+++| ++|++++|........+........+++...|+.+....++|+|||+|+...+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~ 79 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPP 79 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCch
Confidence 5899999999999999999999999 999999886555555566666667899999999999888999999999977665
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHH
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYH 188 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~ 188 (343)
.+..++...++.|+.++.+|+++|++.++|+||+||.+|||.....+..|+.+...+|..|.++|+.+|.++|.+++.+.
T Consensus 80 ~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~ 159 (312)
T d2b69a1 80 NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYM 159 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999988889999887777888899999999999999999999
Q ss_pred HHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEecCC
Q 019309 189 RQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNP 268 (343)
Q Consensus 189 ~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~~ 268 (343)
+++|++++++||+.||||+.......+++.++..+..|+++.+++++.+.++++|++|++++++.+++....+.||++++
T Consensus 160 ~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~~~~~n~~~~ 239 (312)
T d2b69a1 160 KQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 239 (312)
T ss_dssp HHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESCC
T ss_pred HHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhccCCceEecCC
Confidence 99999999999999999988776677899999999999999999999999999999999999999999888999999999
Q ss_pred CccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 269 GEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 269 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
..+++.|+++.+.+.++.+.++.+.+..........+|.+|++++|||+|+++++|+|+++++||+++.+
T Consensus 240 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 240 EEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888877777777888999999999999999999999999999988764
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=6.8e-50 Score=352.07 Aligned_cols=300 Identities=29% Similarity=0.435 Sum_probs=260.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe------EEEEecCCC-CCccchhhhcCCCceEEEEcccCCcc-----cCCCCE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE------VIVADNYFT-GSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQ 97 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~------V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~ 97 (343)
|||||||||||||++|++.|+++| +. |+.+++... .....+.......+++++.+|+.+.. ...+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g-~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 79 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGA-YPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA 79 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTS-CTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccce
Confidence 899999999999999999999998 54 455544322 22223333444578999999998763 457999
Q ss_pred EEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHh
Q 019309 98 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
|+|+|+.........++...++.|+.++.+++++|.+.++ +|||+||.++||.....+++|+ .+..|.++|+.+
T Consensus 80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~s 154 (322)
T d1r6da_ 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAAS 154 (322)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHH
T ss_pred EEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHH
Confidence 9999988776677778889999999999999999999998 8999999999999988899998 688889999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHh
Q 019309 177 KRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME 256 (343)
Q Consensus 177 K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~ 256 (343)
|..+|.+++.+.++++++++++||++||||+... ..+++.++.++..++++.+++++.+.++|+|++|+|+++..+++
T Consensus 155 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~ 232 (322)
T d1r6da_ 155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLA 232 (322)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc--CcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998543 46889999999999999999999999999999999999999999
Q ss_pred cCC-CcceEecCCCccCHHHHHHHHHHHhCCCcc-eEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 257 GEN-TGPVNIGNPGEFTMLELAETVKELINPGIE-IKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 257 ~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
++. +++||+++++.+++.|+++.+.+.+|.+.. +...+..+.......+|.+|+++.|||+|+++++|+|+++++||+
T Consensus 233 ~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~ 312 (322)
T d1r6da_ 233 GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYR 312 (322)
T ss_dssp HCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred CCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 877 669999999999999999999999998855 344445555556677899999999999999999999999999999
Q ss_pred Hhh
Q 019309 335 SRL 337 (343)
Q Consensus 335 ~~~ 337 (343)
++.
T Consensus 313 ~n~ 315 (322)
T d1r6da_ 313 ENR 315 (322)
T ss_dssp HCH
T ss_pred HhH
Confidence 864
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.5e-48 Score=346.83 Aligned_cols=304 Identities=27% Similarity=0.421 Sum_probs=253.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe-EEEEecCC-CCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE-VIVADNYF-TGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~ 100 (343)
|||||||||||||++|+++|+++| ++ |+++++.. ......+..+....+++++.+|+.|+.. .++|+|||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g-~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNT-QDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHC-SCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 799999999999999999999999 65 55555432 2233345555566799999999998742 26999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC---------C-eEEEEeCCcccCCCCCCCCCCCCC-----CCCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---------A-RILLTSTSEVYGDPLIHPQPETYW-----GNVN 165 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---------~-r~i~~SS~~v~~~~~~~~~~e~~~-----~~~~ 165 (343)
||+...+.....++...++.|+.++.+++++|++.+ + +|||+||..+||.....+..|+.. ...+
T Consensus 80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~ 159 (361)
T d1kewa_ 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT 159 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence 999877667778899999999999999999998764 2 799999999999765444333221 2335
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
+..|.+.|+.+|.++|.++..+..+++++++++||+.||||+... ..+++.++..+..|+++.+++++.+.++|+|++
T Consensus 160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~ 237 (361)
T d1kewa_ 160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237 (361)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc--CcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHH
Confidence 677889999999999999999999999999999999999997543 458899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC--------CcceEEccCCCCCCCccccChHHHHHhcCC
Q 019309 246 DMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP--------GIEIKMVENTPDDPRQRKPDISKAKELLGW 316 (343)
Q Consensus 246 D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 316 (343)
|+|+++..++++.. ++.||+++++.+++.|+++.+.+.++. +..+...+..+.......+|.++++++|||
T Consensus 238 D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw 317 (361)
T d1kewa_ 238 DHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGW 317 (361)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHHCC
Confidence 99999999999876 669999999999999999999987642 234444454555566678899999999999
Q ss_pred cccccHHhHHHHHHHHHHHh
Q 019309 317 EPKVKLRDGLPLMEEDFRSR 336 (343)
Q Consensus 317 ~p~~~~~e~l~~~~~~~~~~ 336 (343)
+|+++++|+|+++++||+++
T Consensus 318 ~P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 318 KPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CCSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999776
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-48 Score=346.38 Aligned_cols=302 Identities=23% Similarity=0.278 Sum_probs=243.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchh-----hhcCCCceEEEEcccCCcccC-------CCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLK-----KWIGHPRFELIRHDVTEPLLI-------EVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~-----~~~~~~~~~~~~~d~~~~~~~-------~~d 96 (343)
|+|||||||||||++|+++|+++| ++|++++|...... ..+. ......+++++.+|+.|.... ++|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 789999999999999999999999 99999998532211 1111 112245899999999987432 579
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC----eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~----r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
+|||+|+.........++...++.|+.++.+|+++|++.++ ||||+||.+|||.....+++|+ ++..|.++
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~ 155 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 155 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCCh
Confidence 99999998777777889999999999999999999998765 5999999999998888889998 67788899
Q ss_pred hHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeEeeeehHHHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP-LTVQKPGTQTRSFCYVSDMVDG 250 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~D~a~~ 250 (343)
|+.+|..+|++++.+.++++++++++||+++|||...... ...+...+.....++. ...++++.+.++++|++|++++
T Consensus 156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a 235 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHH
Confidence 9999999999999999999999999999999999765432 3455556666666654 4556788899999999999999
Q ss_pred HHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccC-------------------------------CCCC
Q 019309 251 LIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN-------------------------------TPDD 299 (343)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------------------------~~~~ 299 (343)
+..++++...+.||+++++.+|+.|+++.+.+.+|........+. .+..
T Consensus 236 ~~~~~~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 315 (357)
T d1db3a_ 236 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAE 315 (357)
T ss_dssp HHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC
T ss_pred HHHHHhCCCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccCCCcc
Confidence 999999888899999999999999999999999985443321000 0111
Q ss_pred CCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 300 PRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 300 ~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
.....+|++|++++|||+|+++++|+|+++++++.+..
T Consensus 316 ~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~ 353 (357)
T d1db3a_ 316 VETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353 (357)
T ss_dssp -CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 22345699999999999999999999999998876653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.8e-47 Score=339.21 Aligned_cols=308 Identities=26% Similarity=0.347 Sum_probs=261.5
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhh------hcCCCceEEEEcccCCc-----cc
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK------WIGHPRFELIRHDVTEP-----LL 92 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~d~~~~-----~~ 92 (343)
+..++.|+|||||||||||++|+++|+++| ++|++++|........... .....+++++.+|..|. ..
T Consensus 11 ~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~ 89 (341)
T d1sb8a_ 11 ELPAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC 89 (341)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH
T ss_pred hCCCCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccc
Confidence 344566899999999999999999999999 9999999854333322111 11235789999999986 34
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
..++.|+|+++......+..++...++.|+.++.+++++|++.++ +|||+||.++||.....+.+|+ .+..|.+
T Consensus 90 ~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~ 164 (341)
T d1sb8a_ 90 AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLS 164 (341)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCS
T ss_pred ccccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCC
Confidence 579999999987776667888999999999999999999999999 9999999999999888899998 6888899
Q ss_pred chHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVD 249 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~ 249 (343)
.|+.+|..+|+++..+.++.+++++++||+.|||++..+.. ..++..++..+..|+++.+++++.+.++++|++|++.
T Consensus 165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~ 244 (341)
T d1sb8a_ 165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 244 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccch
Confidence 99999999999999999999999999999999999876543 4578889999999999999999999999999999999
Q ss_pred HHHHHHhcCC---CcceEecCCCccCHHHHHHHHHHHhCCCc-----ceEEccCCCCCCCccccChHHHHHhcCCccccc
Q 019309 250 GLIRLMEGEN---TGPVNIGNPGEFTMLELAETVKELINPGI-----EIKMVENTPDDPRQRKPDISKAKELLGWEPKVK 321 (343)
Q Consensus 250 ~i~~~~~~~~---~~~~~~~~~~~~s~~e~~~~i~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~ 321 (343)
++..++.... ++.|++++++.+|+.|+++.+.+.++.+. .....+..+.+......|++|+++.|||+|+++
T Consensus 245 a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~s 324 (341)
T d1sb8a_ 245 ANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYD 324 (341)
T ss_dssp HHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCC
T ss_pred hhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCCC
Confidence 9999987654 56999999999999999999999997432 222233334445556789999999999999999
Q ss_pred HHhHHHHHHHHHHHhh
Q 019309 322 LRDGLPLMEEDFRSRL 337 (343)
Q Consensus 322 ~~e~l~~~~~~~~~~~ 337 (343)
++|+|+++++||++..
T Consensus 325 l~~gi~~ti~wy~~~~ 340 (341)
T d1sb8a_ 325 VSAGVALAMPWYIMFL 340 (341)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998854
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.4e-46 Score=332.52 Aligned_cols=306 Identities=25% Similarity=0.364 Sum_probs=253.4
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEE
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIY 99 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi 99 (343)
++.++|||||||||||||++|+++|+++| ++|++++|...... ... ....++..+|+.+. .+.++|+||
T Consensus 11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~---~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~Vi 84 (363)
T d2c5aa1 11 WPSENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHM---TED--MFCDEFHLVDLRVMENCLKVTEGVDHVF 84 (363)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSS---CGG--GTCSEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccch---hhh--cccCcEEEeechhHHHHHHHhhcCCeEe
Confidence 45589999999999999999999999999 99999987543221 111 13567888888876 345899999
Q ss_pred EecCCCCcccc-ccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCC--CCCCCCCCCCchHH
Q 019309 100 HLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYW--GNVNPIGVRSCYDE 175 (343)
Q Consensus 100 ~~a~~~~~~~~-~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~--~~~~~~~~~~~Y~~ 175 (343)
|+|+....... ...+......|+.++.+++++|++.++ ||||+||..+|+.....+..|... ....+..|.++|+.
T Consensus 85 h~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~ 164 (363)
T d2c5aa1 85 NLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL 164 (363)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH
T ss_pred ecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHH
Confidence 99976654333 467778889999999999999999999 899999999999877666665532 23357778899999
Q ss_pred hHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC---ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD---GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
+|..+|++++.+.+++|++++++||+.+||+...... ...................++++.+.++|+|++|+++++.
T Consensus 165 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~ 244 (363)
T d2c5aa1 165 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVL 244 (363)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHH
Confidence 9999999999999999999999999999999764332 2233445555666777888889999999999999999999
Q ss_pred HHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHH
Q 019309 253 RLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEED 332 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~ 332 (343)
.+++...++.||++++..+|+.|+++.+.+.+|.+.++...+.. .......+|.+|++++|||+|+++++|+|+++++|
T Consensus 245 ~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~-~~~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w 323 (363)
T d2c5aa1 245 RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFW 323 (363)
T ss_dssp HHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC-CCCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC-CCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99998889999999999999999999999999998888776644 34455668999999999999999999999999999
Q ss_pred HHHhh
Q 019309 333 FRSRL 337 (343)
Q Consensus 333 ~~~~~ 337 (343)
|+++.
T Consensus 324 ~~~~~ 328 (363)
T d2c5aa1 324 IKEQI 328 (363)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.1e-45 Score=328.35 Aligned_cols=306 Identities=25% Similarity=0.336 Sum_probs=251.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC--CCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY--FTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~ 101 (343)
+|+|||||||||||++|+++|+++| ++|+++.+. ...........+...+++++.+|+.|.. +.++|.|+|+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g-~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~ 80 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNH-PDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 80 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCC-CCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence 5899999999999999999999999 776555442 2222222222233468999999998873 4579999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCC---CCCC----CCCCCCCCCCCCCCCchH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL---IHPQ----PETYWGNVNPIGVRSCYD 174 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~---~~~~----~e~~~~~~~~~~~~~~Y~ 174 (343)
|+......+..++.+.++.|+.++.++++++.+.+.++|++||..+||... ..+. ........++..|.+.|+
T Consensus 81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~ 160 (346)
T d1oc2a_ 81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160 (346)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHH
Confidence 988776667788899999999999999999999999999999999997421 1111 111222335777889999
Q ss_pred HhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 175 EGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 175 ~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
.+|.++|.+++.+.++++++++++||+.||||.... ...+..++.....+..+.+++++.+.++++|++|+|++++.+
T Consensus 161 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~--~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~ 238 (346)
T d1oc2a_ 161 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI--EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI 238 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT--TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCc--cchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHH
Confidence 999999999999999999999999999999997432 467788888888999999999999999999999999999999
Q ss_pred HhcCC-CcceEecCCCccCHHHHHHHHHHHhCCC-cceEEccCCCCCCCccccChHHHHHhcCCcccc-cHHhHHHHHHH
Q 019309 255 MEGEN-TGPVNIGNPGEFTMLELAETVKELINPG-IEIKMVENTPDDPRQRKPDISKAKELLGWEPKV-KLRDGLPLMEE 331 (343)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~-~~~e~l~~~~~ 331 (343)
++++. ++.|++++++..++.|+++.+.+.++.+ ..+...+..+.......+|++|++++|||+|++ +++|+|+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~ 318 (346)
T d1oc2a_ 239 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQ 318 (346)
T ss_dssp HHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred HhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHH
Confidence 98877 7789999999999999999999999865 345555555555556678999999999999986 69999999999
Q ss_pred HHHHhh
Q 019309 332 DFRSRL 337 (343)
Q Consensus 332 ~~~~~~ 337 (343)
||+++.
T Consensus 319 w~~~n~ 324 (346)
T d1oc2a_ 319 WYTDNQ 324 (346)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 998753
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-46 Score=328.63 Aligned_cols=304 Identities=23% Similarity=0.332 Sum_probs=249.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh--hhcCCCceEEEEcccCCccc-------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDVTEPLL-------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~ 100 (343)
|||||||||||||++|++.|+++| ++|++++|.......... ......+++++++|+.|... .++|+|||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 889999999999999999999999 999999885444333222 22334689999999998742 27999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
+|+.........++.+.++.|+.++.+++++|++.++ +||++||..+|+.....+..|.. ....|.++|+.+|..
T Consensus 80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~ 155 (338)
T d1udca_ 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLM 155 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHH
T ss_pred CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhh
Confidence 9997666666778899999999999999999999999 89999999999877666655553 455678899999999
Q ss_pred HHHHHHHHHHH-hCCceEEEEeccccCCCCCCCC--------ccHHHHHHHHHHcC-CCeEEecC------CceeEeeee
Q 019309 180 AETLMFDYHRQ-HGIQIRIARIFNTYGPRMNIDD--------GRVVSNFIAQALRG-EPLTVQKP------GTQTRSFCY 243 (343)
Q Consensus 180 ~E~~~~~~~~~-~~~~~~i~R~~~v~G~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~v~ 243 (343)
+|..+..+... .+++++++|++++|||...... ..++..++..+..+ ..+.+++. +.+.++|+|
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~ 235 (338)
T d1udca_ 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred hhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence 99999876665 4799999999999998653221 23566666655554 45666653 667899999
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCccc
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPK 319 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~ 319 (343)
++|++.++..+..... .++||+++++.+|+.|+++.+.+.+|.+..+...+..+.......+|.+|+++.|||+|+
T Consensus 236 v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~ 315 (338)
T d1udca_ 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred EeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcC
Confidence 9999988887776322 468999999999999999999999999988888877666666778899999999999999
Q ss_pred ccHHhHHHHHHHHHHHhhC
Q 019309 320 VKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 320 ~~~~e~l~~~~~~~~~~~~ 338 (343)
++++|+|+++++||+++.+
T Consensus 316 ~~l~egi~~ti~w~~~~~~ 334 (338)
T d1udca_ 316 RTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp CCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhchh
Confidence 9999999999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-45 Score=328.11 Aligned_cols=306 Identities=27% Similarity=0.453 Sum_probs=252.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a~ 103 (343)
|||||||||||||++|+++|+++|+++|+++++.. .........++++++.+|+++.. ..++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~----~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS----DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC----GGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC----cchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 79999999999999999999999966899998742 23334445678999999997652 336999999999
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCC--CCCCCCCCCchHHhHHHHH
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWG--NVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~--~~~~~~~~~~Y~~~K~~~E 181 (343)
.........++...+..|+.++.+++++|.+.+++++++||..+|+........|.... ......|.+.|+.+|..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 87777777888899999999999999999999999999999999998776666655332 2234556788999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHH
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNID------DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM 255 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~ 255 (343)
+++..+.++++++++++|++.+||+..... .......++..++.|+.+.+++++.+.++++|++|+|+++..++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~ 236 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence 999999999999999999999999865332 13467888999999999999999999999999999999999999
Q ss_pred hcCC----CcceEecCCC-ccCHHHHHHHHHHHhCCCcceEEccCC---------------CCCCCccccChHHHHHhcC
Q 019309 256 EGEN----TGPVNIGNPG-EFTMLELAETVKELINPGIEIKMVENT---------------PDDPRQRKPDISKAKELLG 315 (343)
Q Consensus 256 ~~~~----~~~~~~~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~lg 315 (343)
+++. +++||+++++ .+|+.|+++.+.+.++........+.. ..+.....+|++|++++||
T Consensus 237 ~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (342)
T d2blla1 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (342)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCHHHHHHHHC
Confidence 8743 5689998765 589999999999999865443322211 1122344679999999999
Q ss_pred CcccccHHhHHHHHHHHHHHhhCC
Q 019309 316 WEPKVKLRDGLPLMEEDFRSRLGV 339 (343)
Q Consensus 316 ~~p~~~~~e~l~~~~~~~~~~~~~ 339 (343)
|+|+++++|+|+++++||+++...
T Consensus 317 w~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 317 WEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred CCcCCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999988653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.5e-45 Score=324.21 Aligned_cols=303 Identities=20% Similarity=0.235 Sum_probs=251.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhhcCCCceEEEEcccCCcccC-------CCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKWIGHPRFELIRHDVTEPLLI-------EVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~-------~~d~vi~~ 101 (343)
|+|||||||||||++|+++|+++| |+|++++|...... ..+..+....+++++.+|+.|.... .+++++|+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence 689999999999999999999999 99999998643322 2333443456899999999987432 58899999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
++.........++...+..|+.++.+++++|++.++ +|++.||..+||.......+|+ ++..|.++|+.+|.+
T Consensus 80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~ 154 (321)
T d1rpna_ 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLY 154 (321)
T ss_dssp CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHH
T ss_pred cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHHHH
Confidence 987776666778889999999999999999999987 6888999999988887788887 688888999999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCC-CeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
+|+++..+..+++++++++||+++|||...... .+.+..++.+...++ ....++++++.++|+|++|+|+++..++++
T Consensus 155 ~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~ 234 (321)
T d1rpna_ 155 GHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQ 234 (321)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhc
Confidence 999999999999999999999999999754332 234445555555554 455578899999999999999999999999
Q ss_pred CCCcceEecCCCccCHHHHHHHHHHHhCCCcce--EEcc--CCCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 258 ENTGPVNIGNPGEFTMLELAETVKELINPGIEI--KMVE--NTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 258 ~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
+..+.||+++++..|+.++++.+.+.+|.+.+. ...+ ..+........|++|++++|||+|+++++|+|+++++||
T Consensus 235 ~~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~ 314 (321)
T d1rpna_ 235 DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEAD 314 (321)
T ss_dssp SSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred CCcCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 889999999999999999999999999876432 2222 122334456779999999999999999999999999999
Q ss_pred HHhhC
Q 019309 334 RSRLG 338 (343)
Q Consensus 334 ~~~~~ 338 (343)
+++.+
T Consensus 315 l~~~~ 319 (321)
T d1rpna_ 315 LRRVS 319 (321)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-44 Score=315.88 Aligned_cols=302 Identities=21% Similarity=0.220 Sum_probs=245.1
Q ss_pred CEE-EEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhhh------cCCCceEEEEcccCCccc-------CC
Q 019309 30 MRI-LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKKW------IGHPRFELIRHDVTEPLL-------IE 94 (343)
Q Consensus 30 ~~i-lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~------~~~~~~~~~~~d~~~~~~-------~~ 94 (343)
||| ||||||||||++|+++|+++| |+|++++|.....+ ..+..+ ....+++++.+|+.|+.. .+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 578 999999999999999999999 99999999543221 111111 112478999999998732 26
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC----eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~----r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
+++++|+++.........++...++.|+.++.+++++|+++++ +|||+||.+|||.....+++|+ ++..|.
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~ 154 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPR 154 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCC
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCC
Confidence 8999999987766666778888899999999999999999875 6999999999998888889998 678888
Q ss_pred CchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 171 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
++|+.+|..+|++++.+.++++++++++||+.+|||...... ..+...++.....+..+..++++.+.++++|++|++
T Consensus 155 ~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~ 234 (347)
T d1t2aa_ 155 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYV 234 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHH
Confidence 999999999999999999999999999999999999754432 233344555566677788888999999999999999
Q ss_pred HHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcceEEccC---------------------CCCCCCccccCh
Q 019309 249 DGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN---------------------TPDDPRQRKPDI 307 (343)
Q Consensus 249 ~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---------------------~~~~~~~~~~~~ 307 (343)
+++..++++...+.|++......++.+....+...++.......... .+.......+|+
T Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~ 314 (347)
T d1t2aa_ 235 EAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDC 314 (347)
T ss_dssp HHHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCC
T ss_pred HHHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEeeECH
Confidence 99999999988889999999999999999999999987654332111 011222345699
Q ss_pred HHHHHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 308 SKAKELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 308 ~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
+|++++|||+|+++++|+|+++++++.+..
T Consensus 315 skak~~Lgw~P~~sl~e~i~~~I~~~~~~~ 344 (347)
T d1t2aa_ 315 TKAKQKLNWKPRVAFDELVREMVHADVELM 344 (347)
T ss_dssp HHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-43 Score=312.43 Aligned_cols=306 Identities=23% Similarity=0.317 Sum_probs=245.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc------cchh--hhcCCCceEEEEcccCCccc-------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK------DNLK--KWIGHPRFELIRHDVTEPLL------- 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------~~~~--~~~~~~~~~~~~~d~~~~~~------- 92 (343)
|.|||||||||||||++|+++|+++| ++|++++|...... .... ......+++++.+|+.|...
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 79 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK 79 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccc
Confidence 45899999999999999999999999 99999976322211 1111 12234689999999998733
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRS 171 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~ 171 (343)
..+++++|+|+...+.....++.+.++.|+.++.++++++++.++ +|||+||..+|+........++. ....+.+
T Consensus 80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~ 155 (346)
T d1ek6a_ 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTN 155 (346)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSS
T ss_pred cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCC
Confidence 258899999998776677778899999999999999999999999 89999999999876554443332 3455678
Q ss_pred chHHhHHHHHHHHHHHHHH-hCCceEEEEeccccCCCCCCC--------CccHHHHHHHHHHc-CCCeEEec------CC
Q 019309 172 CYDEGKRVAETLMFDYHRQ-HGIQIRIARIFNTYGPRMNID--------DGRVVSNFIAQALR-GEPLTVQK------PG 235 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~-~~~~~~i~R~~~v~G~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~------~~ 235 (343)
+|+.+|..+|+.+..+.+. .+++.+++|++.+||+..... ...++..++..+.. +..+.+++ ++
T Consensus 156 ~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g 235 (346)
T d1ek6a_ 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCC
Confidence 8999999999999988765 489999999999999864321 12345555554443 45555544 35
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHH
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAK 311 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
.+.++|+|++|+|.++..+++... .++||+++++.+++.|+++.+.+.+|.+.++...+..+........|.+|++
T Consensus 236 ~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~ 315 (346)
T d1ek6a_ 236 TGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQ 315 (346)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHH
T ss_pred CeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHH
Confidence 567899999999999988765422 4589999999999999999999999999888888777666677788999999
Q ss_pred HhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 312 ELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 312 ~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
++|||+|+++++|+|+++++||+++..
T Consensus 316 ~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 316 EELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 999999999999999999999998754
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-43 Score=309.09 Aligned_cols=287 Identities=23% Similarity=0.307 Sum_probs=237.2
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-------cCCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~d~vi~~ 101 (343)
+|||||||||||||++|+++|+++| +.|+++++... .|+.+.. ..++|.|+|+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-~~vi~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~v~~~ 61 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRDE-------------------LNLLDSRAVHDFFASERIDQVYLA 61 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTTT-------------------CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-CEEEEecCchh-------------------ccccCHHHHHHHHhhcCCCEEEEc
Confidence 6899999999999999999999999 88877654211 2333321 1258999999
Q ss_pred cCCCCc-cccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHH
Q 019309 102 ACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRV 179 (343)
Q Consensus 102 a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~ 179 (343)
|+.... .....++.+.++.|+.++.+++++|++.++ ||||+||.++||.....+++|+......+..+.++|+.+|.+
T Consensus 62 a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 141 (315)
T d1e6ua_ 62 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA 141 (315)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred chhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHH
Confidence 976543 234556777889999999999999999999 899999999999888888898866555666666789999999
Q ss_pred HHHHHHHHHHHhCCceEEEEeccccCCCCCCCC--ccHH-----HHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHH
Q 019309 180 AETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD--GRVV-----SNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLI 252 (343)
Q Consensus 180 ~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~ 252 (343)
+|++++.+.+++|++++++||++||||+..... .... ...+.....+..+.+.+++...++++|++|+++++.
T Consensus 142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~ 221 (315)
T d1e6ua_ 142 GIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASI 221 (315)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHH
Confidence 999999999999999999999999999865432 2222 233455666778888888889999999999999999
Q ss_pred HHHhcCC----------CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccH
Q 019309 253 RLMEGEN----------TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKL 322 (343)
Q Consensus 253 ~~~~~~~----------~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 322 (343)
.+++... .+.++++.+...+..++++.+.+.+|.+..+.+.+..+.......+|++|++ +|||+|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k-~Lg~~p~~~l 300 (315)
T d1e6ua_ 222 HVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISL 300 (315)
T ss_dssp HHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHH-HTTCCCCCCH
T ss_pred HhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHH-HcCCCCCCCH
Confidence 9996542 4579999999999999999999999999888877766666666678999997 5999999999
Q ss_pred HhHHHHHHHHHHHh
Q 019309 323 RDGLPLMEEDFRSR 336 (343)
Q Consensus 323 ~e~l~~~~~~~~~~ 336 (343)
+|+|+++++||+++
T Consensus 301 ~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 301 EAGLASTYQWFLEN 314 (315)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.3e-42 Score=305.00 Aligned_cols=303 Identities=20% Similarity=0.265 Sum_probs=239.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-cchhh------hcCCCceEEEEcccCCccc-------CC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-DNLKK------WIGHPRFELIRHDVTEPLL-------IE 94 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~------~~~~~~~~~~~~d~~~~~~-------~~ 94 (343)
+|++||||||||||++|+++|+++| |+|++++|...... ..... ......+++..+|+.+... .+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 5899999999999999999999999 99999999543211 11111 1223568899999988632 36
Q ss_pred CCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-----C-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-----~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
+|+|||+|+.........++...+..|+.++.++++++++.. . ++++.||..+|+.. ..+.+|+ .+..
T Consensus 80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~-----~~~~ 153 (339)
T d1n7ha_ 80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSET-----TPFH 153 (339)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTT-----SCCC
T ss_pred cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCC-----CCCC
Confidence 899999999877666778899999999999999999997643 2 67788888877643 4567787 6888
Q ss_pred CCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-ccHHHHHHHH-HHcCCCeEEecCCceeEeeeehHH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQ-ALRGEPLTVQKPGTQTRSFCYVSD 246 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~D 246 (343)
|.+.|+.+|..+|.++..+.++++++++++||++||||...... ...+...+.. ........+.+++.+.++++|++|
T Consensus 154 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D 233 (339)
T d1n7ha_ 154 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGD 233 (339)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeeh
Confidence 99999999999999999999999999999999999999754332 2233333333 334455566778889999999999
Q ss_pred HHHHHHHHHhcCCCcceEecCCCccCHHHHHHHHHHHhCCCcc--eEEcc--CCCCCCCccccChHHHHHhcCCcccccH
Q 019309 247 MVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIE--IKMVE--NTPDDPRQRKPDISKAKELLGWEPKVKL 322 (343)
Q Consensus 247 ~a~~i~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~lg~~p~~~~ 322 (343)
+|+++..+++++..+.+++..+...+..++++.+.+.++.... +...+ ..+........|++|++++|||+|++++
T Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~~l 313 (339)
T d1n7ha_ 234 YVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGF 313 (339)
T ss_dssp HHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCH
T ss_pred HHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCCCH
Confidence 9999999999988888888888999999999999999987643 22222 2233344556799999999999999999
Q ss_pred HhHHHHHHHHHHHhhC
Q 019309 323 RDGLPLMEEDFRSRLG 338 (343)
Q Consensus 323 ~e~l~~~~~~~~~~~~ 338 (343)
+|+|+++++||++..+
T Consensus 314 e~gi~~ti~~~~~~~~ 329 (339)
T d1n7ha_ 314 EKLVKMMVDEDLELAK 329 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987643
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-42 Score=307.11 Aligned_cols=302 Identities=23% Similarity=0.330 Sum_probs=235.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh--hhcCCCceEEEEcccCCccc-------CCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK--KWIGHPRFELIRHDVTEPLL-------IEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~ 100 (343)
|.|||||||||||++|+++|+++| ++|+++++.......... ......+++++.+|+.|... .++|+|||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih 80 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 569999999999999999999999 999999875443332221 22224579999999998742 27999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCC----CCCCCCCCCCCCCCCCCCchHH
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLI----HPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~----~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
+|+...+.....++......|+.++.+++++|++.++ ||||+||..+||.... .+++|+ .+..|.++|+.
T Consensus 81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~ 155 (347)
T d1z45a2 81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGH 155 (347)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHH
T ss_pred ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHh
Confidence 9998776677778889999999999999999999998 8999999999997544 335555 67788899999
Q ss_pred hHHHHHHHHHHHHHH--hCCceEEEEeccccCCCCCCC--------CccHHHHHHHHHHc-CCCeEEecC------Ccee
Q 019309 176 GKRVAETLMFDYHRQ--HGIQIRIARIFNTYGPRMNID--------DGRVVSNFIAQALR-GEPLTVQKP------GTQT 238 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~--~~~~~~i~R~~~v~G~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~------~~~~ 238 (343)
+|..+|++++.+... .+++++++|++.+||+..... ...++..++..... +.++.++++ +...
T Consensus 156 sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~ 235 (347)
T d1z45a2 156 TKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPI 235 (347)
T ss_dssp HHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCE
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCcee
Confidence 999999999998764 478999999999999753211 12355555554443 344555544 3456
Q ss_pred EeeeehHHHHHHHHHHHhcCC--------CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHH
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN--------TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKA 310 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~--------~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
++++++.|++.+++.+++... .+.||+++++++|+.|+++.+.+.+|.+..+...+..+.......+|.+|+
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~ 315 (347)
T d1z45a2 236 RDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRA 315 (347)
T ss_dssp ECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHH
T ss_pred eeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHH
Confidence 788999999999888876321 568999999999999999999999999888777666555556667899999
Q ss_pred HHhcCCcccccHHhHHHHHHHHHHHhh
Q 019309 311 KELLGWEPKVKLRDGLPLMEEDFRSRL 337 (343)
Q Consensus 311 ~~~lg~~p~~~~~e~l~~~~~~~~~~~ 337 (343)
+++|||+|+++++|+|+++++||+++.
T Consensus 316 ~~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 316 KRELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999874
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3.8e-41 Score=302.93 Aligned_cols=308 Identities=22% Similarity=0.327 Sum_probs=240.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-----cchh-------------hhcCCCceEEEEcccCCc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-----DNLK-------------KWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~~~-------------~~~~~~~~~~~~~d~~~~ 90 (343)
+||||||||+||||++|+++|++++.++|+++++-..... +... .......+.++.+|+.|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 6899999999999999999999753399999975221110 0000 011234688999999986
Q ss_pred cc--------CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCC--CCC
Q 019309 91 LL--------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQ--PET 159 (343)
Q Consensus 91 ~~--------~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~--~e~ 159 (343)
.. .++|+|||+|+.........++...++.|+.++.++++++++.++ +++++||..+|+....... .++
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 32 368999999998777677778888999999999999999999999 8999999999876533321 122
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCC-------ccHHHHHHHHHH--------
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDD-------GRVVSNFIAQAL-------- 224 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~-------~~~~~~~~~~~~-------- 224 (343)
.....++..|.++|+.+|..+|++++.+...+|++++++||+++|||+..... ...++.++..+.
T Consensus 162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~ 241 (383)
T d1gy8a_ 162 PIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQR 241 (383)
T ss_dssp CBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC--
T ss_pred ccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcccccc
Confidence 22233678889999999999999999999999999999999999999865432 233444433332
Q ss_pred --------cCCCeEEec------CCceeEeeeehHHHHHHHHHHHhcC----------CCcceEecCCCccCHHHHHHHH
Q 019309 225 --------RGEPLTVQK------PGTQTRSFCYVSDMVDGLIRLMEGE----------NTGPVNIGNPGEFTMLELAETV 280 (343)
Q Consensus 225 --------~~~~~~~~~------~~~~~~~~v~v~D~a~~i~~~~~~~----------~~~~~~~~~~~~~s~~e~~~~i 280 (343)
.+.++.+++ ++.+.++|+|++|+|+++..+++.. ..++||+++++++|+.|+++.+
T Consensus 242 ~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~i 321 (383)
T d1gy8a_ 242 LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVA 321 (383)
T ss_dssp ---------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHHH
T ss_pred chhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHHH
Confidence 345555554 3667899999999999999998641 1358999999999999999999
Q ss_pred HHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcccccHHhHHHHH-HHHHHHh
Q 019309 281 KELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLM-EEDFRSR 336 (343)
Q Consensus 281 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~-~~~~~~~ 336 (343)
.+.+|.+..+...+..+.+......|++|++++|||+|+++++|+|.++ +.|++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 322 RKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 9999999888887776666677788999999999999999999999887 4677665
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=5.6e-41 Score=296.71 Aligned_cols=304 Identities=26% Similarity=0.360 Sum_probs=242.2
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCC-ccchhhhcCCCceEEEEcccCCccc-------CCCCEEEEec
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGS-KDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 102 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~~a 102 (343)
||||||||||||++|+++|+++| ++|+++++..... ...+.......+++++.+|+.+... .++|+|||+|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 79999999999999999999999 9999997643222 2233333445789999999998632 2579999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccC-CCCCCCCCC-----------CCCCCCCCCCC
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG-DPLIHPQPE-----------TYWGNVNPIGV 169 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~-~~~~~~~~e-----------~~~~~~~~~~~ 169 (343)
+.........++...++.|+.++.+|+++|.+.++ ++|++||..+++ .....+..+ .......+..|
T Consensus 81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
T d1orra_ 81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF 160 (338)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence 98776666778899999999999999999999998 666666655544 332222111 11122345667
Q ss_pred CCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHc-----CCCeEEecCCceeEeeee
Q 019309 170 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALR-----GEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 170 ~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~ 243 (343)
.+.|+.+|...|.++..+...++....++|++.+|++..... ....+..++..+.. ++++.+++++.+.++++|
T Consensus 161 ~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~ 240 (338)
T d1orra_ 161 HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEE
T ss_pred ccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeec
Confidence 788999999999999999999999999999999998764332 34455666655543 678899999999999999
Q ss_pred hHHHHHHHHHHHhcCC---CcceEecC--CCccCHHHHHHHHHHHhCCCcceEEccCCCCCCCccccChHHHHHhcCCcc
Q 019309 244 VSDMVDGLIRLMEGEN---TGPVNIGN--PGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~~~~~~~--~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
++|++++++.++++.. ++.|++.. +..+++.|+++.+.+.++.+.++...+..+.+......|++|++++|||+|
T Consensus 241 v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~Lg~~p 320 (338)
T d1orra_ 241 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSP 320 (338)
T ss_dssp HHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCCC
T ss_pred ccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHHHHHCCCc
Confidence 9999999999997643 56888854 467899999999999999988888877766666667789999999999999
Q ss_pred cccHHhHHHHHHHHHHH
Q 019309 319 KVKLRDGLPLMEEDFRS 335 (343)
Q Consensus 319 ~~~~~e~l~~~~~~~~~ 335 (343)
+++++|+|+++++||+.
T Consensus 321 ~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 321 KVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999999975
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.7e-41 Score=303.40 Aligned_cols=307 Identities=25% Similarity=0.272 Sum_probs=233.4
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC-------------CCC---ccchh--hhcCCCceEEEEcccCCc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF-------------TGS---KDNLK--KWIGHPRFELIRHDVTEP 90 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-------------~~~---~~~~~--~~~~~~~~~~~~~d~~~~ 90 (343)
||||||||||||||++|+++|+++| |+|++++... ... ...+. ......+++++.+|+.|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 6999999999999999999999999 9999986210 000 00000 111235799999999987
Q ss_pred ccC-------CCCEEEEecCCCCccccccC---hHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCCC
Q 019309 91 LLI-------EVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 91 ~~~-------~~d~vi~~a~~~~~~~~~~~---~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~e 158 (343)
... ++|+|||+|+......+..+ +...+..|+.++.+++++|++.++ ++++.||..+|+... .+..|
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~-~~~~~ 158 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEE 158 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc-ccccc
Confidence 432 68999999987665444444 446788999999999999999987 577777777776533 22222
Q ss_pred CCC---------CCCCCCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCC---------------Ccc
Q 019309 159 TYW---------GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNID---------------DGR 214 (343)
Q Consensus 159 ~~~---------~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~---------------~~~ 214 (343)
... ....+..|.++|+.+|..+|.++..+.++++++++++||++||||+.... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
T d1i24a_ 159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 238 (393)
T ss_dssp SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCC
T ss_pred ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcccccccccccccccccccccc
Confidence 211 11235677788999999999999999999999999999999999975322 134
Q ss_pred HHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-CcceEe--cCCCccCHHHHHHHHHHHh---CCCc
Q 019309 215 VVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN-TGPVNI--GNPGEFTMLELAETVKELI---NPGI 288 (343)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~--~~~~~~s~~e~~~~i~~~~---g~~~ 288 (343)
++..++.....++++.+++++.+.++|+|++|+++++..++++.. .+.+++ .+++.+|+.|+++.+.+.. +.+.
T Consensus 239 ~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~ 318 (393)
T d1i24a_ 239 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDV 318 (393)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCC
T ss_pred chhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCc
Confidence 678889999999999999999999999999999999999999766 666554 4557899999999998875 4444
Q ss_pred ceEEccC--CCCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHHHHhhC
Q 019309 289 EIKMVEN--TPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 289 ~~~~~~~--~~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~~~~~ 338 (343)
.....+. ..........|.+++++ |||+|+++++++++++++|+++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 319 KKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp CEEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred ceeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHHHHHHH
Confidence 4443332 23344455678899975 9999999999999999999877653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2e-38 Score=282.37 Aligned_cols=304 Identities=21% Similarity=0.255 Sum_probs=236.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi 99 (343)
-.+|||||||||||||++|++.|+++| ++|++++|................+++++.+|+.|+.. ..+|+|+
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 368999999999999999999999999 99999999765554433333334589999999998743 2689999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-e-EEEEeCCcccCCC-CCCCCCCCCCCCCCCCCCCCchHHh
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTSTSEVYGDP-LIHPQPETYWGNVNPIGVRSCYDEG 176 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r-~i~~SS~~v~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~~ 176 (343)
|+|+.........++...+..|+.++.++++++++.+. + +++.||..+++.. ...+.+|+ .+..|.++|+.+
T Consensus 85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~~~ 159 (356)
T d1rkxa_ 85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNS 159 (356)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHH
T ss_pred hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCccccc
Confidence 99998776667788899999999999999999999876 4 5555555444433 33344555 577788899999
Q ss_pred HHHHHHHHHHHHH---------HhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 177 KRVAETLMFDYHR---------QHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 177 K~~~E~~~~~~~~---------~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
|...|..+..+.. ++++.++++||+.+|||++.. ...++..+++....+. ..+++.+.+.++++|++|+
T Consensus 160 k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~-~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~D~ 237 (356)
T d1rkxa_ 160 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQ-PVIIRNPHAIRPWQHVLEP 237 (356)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTC-CEECSCTTCEECCEETHHH
T ss_pred cccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch-hhHHHHHHHHHHhCCC-ceEEeeccccccccccccc
Confidence 9999998887664 457889999999999997533 2456777777666555 4456788899999999999
Q ss_pred HHHHHHHHhcCC------CcceE--ecCCCccCHHHHHHHHHHHhCCCcceEEccC-CCCCCCccccChHHHHHhcCCcc
Q 019309 248 VDGLIRLMEGEN------TGPVN--IGNPGEFTMLELAETVKELINPGIEIKMVEN-TPDDPRQRKPDISKAKELLGWEP 318 (343)
Q Consensus 248 a~~i~~~~~~~~------~~~~~--~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~p 318 (343)
++++..+++... ....+ ......++..++++.+.+.++....+..... .+.+.....+|++|++++|||+|
T Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P 317 (356)
T d1rkxa_ 238 LSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHP 317 (356)
T ss_dssp HHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCC
T ss_pred cchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCc
Confidence 999999988643 22223 3345688999999999999998777665432 23445556789999999999999
Q ss_pred cccHHhHHHHHHHHHHHhhC
Q 019309 319 KVKLRDGLPLMEEDFRSRLG 338 (343)
Q Consensus 319 ~~~~~e~l~~~~~~~~~~~~ 338 (343)
+++++|+|+++++||+.-..
T Consensus 318 ~~~l~egi~~ti~wyk~~~~ 337 (356)
T d1rkxa_ 318 RWNLNTTLEYIVGWHKNWLS 337 (356)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999987544
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.3e-38 Score=274.35 Aligned_cols=268 Identities=20% Similarity=0.220 Sum_probs=230.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----c--CCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~d~vi~~ 101 (343)
.|||||||||||||++|+++|.++| ++|++++|.. .|+.|.. + .++|+|||+
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~--------------------~D~~d~~~~~~~l~~~~~d~vih~ 59 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQD--------------------LDITNVLAVNKFFNEKKPNVVINC 59 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT--------------------CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh--------------------ccCCCHHHHHHHHHHcCCCEEEee
Confidence 3899999999999999999999999 9999998742 2343331 1 268999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAE 181 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E 181 (343)
|+..........+......|+.....+.+.+...+.+++++||..+|+.....+..|. ++..+...|+.+|...|
T Consensus 60 a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 60 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGE 134 (281)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhhhhhhhHHH
Confidence 9988777777888888999999999999999999889999999999999888888888 67778889999999999
Q ss_pred HHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCc
Q 019309 182 TLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTG 261 (343)
Q Consensus 182 ~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~ 261 (343)
++++ +.+.+++++||+++||++ ..+...++..+..++.+.+.+ ++.++++|++|+++++..++++...|
T Consensus 135 ~~~~----~~~~~~~i~R~~~vyG~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~g 203 (281)
T d1vl0a_ 135 NFVK----ALNPKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNYG 203 (281)
T ss_dssp HHHH----HHCSSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCCE
T ss_pred HHHH----HhCCCccccceeEEeCCC-----cccccchhhhhccCCceeecC--CceeccchhhhhhhhhhhhhhhcccC
Confidence 8875 448899999999999996 356778888888888887765 47899999999999999999998899
Q ss_pred ceEecCCCccCHHHHHHHHHHHhCCCcceEEccCCCC-----CCCccccChHHHHHhcCCcccccHHhHHHHHHHHHH
Q 019309 262 PVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPD-----DPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 334 (343)
Q Consensus 262 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~~ 334 (343)
.||+++++.+|+.|+++.+.+.+|.+.++...+.... ++....+|++|++++|||+|+ +|+|+|++++++++
T Consensus 204 ~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 204 TFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp EEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred ceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 9999999999999999999999999888776543221 223346899999999999998 99999999999874
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=2.4e-37 Score=273.67 Aligned_cols=300 Identities=17% Similarity=0.169 Sum_probs=220.2
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhh----hcCCCceEEEEcccCCc-----ccCCC
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK----WIGHPRFELIRHDVTEP-----LLIEV 95 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~d~~~~-----~~~~~ 95 (343)
+++.|++|||||||||||++|+++|+++| ++|+++.|+... ...+.. ........++.+|+.+. .+.++
T Consensus 7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (342)
T d1y1pa1 7 VLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASK-LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchh-HHHHHHhhhccccccccEEEeccccchhhhhhhcccc
Confidence 45678999999999999999999999999 999999985321 111111 11223455678899875 45579
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeCCcccCCCC----CCCCCCCCC--------
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----IHPQPETYW-------- 161 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~-~-r~i~~SS~~v~~~~~----~~~~~e~~~-------- 161 (343)
|.|+|+++... ...++...+..|+.++.+++++|.+.+ + +|||+||.++++... ....+|+.+
T Consensus 85 ~~v~~~a~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (342)
T d1y1pa1 85 AGVAHIASVVS---FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp SEEEECCCCCS---CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred hhhhhhccccc---ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccc
Confidence 99999998654 345667788999999999999999874 5 899999987644321 112223221
Q ss_pred ---CCCCCCCCCCchHHhHHHHHHHHHHHHHHhC--CceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEecCC
Q 019309 162 ---GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 162 ---~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~--~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
....+..|.++|+.+|..+|++++.+.++++ ++++++||+++|||...+.. ...+..++..+.+++..... .+
T Consensus 162 ~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~ 240 (342)
T d1y1pa1 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-AL 240 (342)
T ss_dssp HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HT
T ss_pred ccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CC
Confidence 2224566677899999999999999988765 67888999999999765443 45677888888888766543 35
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC-CcceEecCCCccCHHHHHHHHHHHhCC-CcceEEccCCCCCCCccccC---hHHH
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN-TGPVNIGNPGEFTMLELAETVKELINP-GIEIKMVENTPDDPRQRKPD---ISKA 310 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~-~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~---~~~~ 310 (343)
.+.++++|++|+|++++.+++++. .+.|++++++.+++.|+++.|.+.+.. ..+.. .+.. ......++ ..+.
T Consensus 241 ~~~~~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~-~~~~--~~~~~~~~~~~s~~~ 317 (342)
T d1y1pa1 241 MPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPAD-FPDQ--GQDLSKFDTAPSLEI 317 (342)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCC-CCCC--CCCCCEECCHHHHHH
T ss_pred ccceeeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCcc-CCcc--CcccccccchHHHHH
Confidence 567899999999999999999866 778999999999999999999998732 22111 1111 11112222 2344
Q ss_pred HHhcCCcccccHHhHHHHHHHHH
Q 019309 311 KELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 311 ~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
.+.|||.+.++++|+|+++++.+
T Consensus 318 ~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 318 LKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp HHHTTCCSCCCHHHHHHHHHCCS
T ss_pred HHHcCCCCCcCHHHHHHHHHHhC
Confidence 45699999889999999998743
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-37 Score=265.57 Aligned_cols=292 Identities=20% Similarity=0.247 Sum_probs=211.4
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEE-cccCC-----cccCCCCEEEEecCCC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR-HDVTE-----PLLIEVDQIYHLACPA 105 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~-----~~~~~~d~vi~~a~~~ 105 (343)
|||||||||||++|++.|+++|.++|+++++..... ............... .|+.+ .....+++|+|+|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG--GGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc--hhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 899999999999999999999955799987533221 122222222233322 22222 2345799999999754
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHH
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMF 185 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~ 185 (343)
. ....+.......|+.++.++++++++.++++++.||..+|+........|+ .+..|.+.|+.+|..+|.++.
T Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K~~~e~~~~ 152 (307)
T d1eq2a_ 80 S--TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (307)
T ss_dssp C--TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccchhhhhcc
Confidence 3 344566677888899999999999999999999999999887766666665 466777899999999999999
Q ss_pred HHHHHhCCceEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEE-ecCCceeEeeeehHHHHHHHHHHHhcCCCcc
Q 019309 186 DYHRQHGIQIRIARIFNTYGPRMNIDD--GRVVSNFIAQALRGEPLTV-QKPGTQTRSFCYVSDMVDGLIRLMEGENTGP 262 (343)
Q Consensus 186 ~~~~~~~~~~~i~R~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~ 262 (343)
.+..+++++++++||+.+|||+..... ......++..+..++...+ .+++...++++|++|+++++..++++...+.
T Consensus 153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~~~~ 232 (307)
T d1eq2a_ 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232 (307)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEE
T ss_pred ccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhccccc
Confidence 999999999999999999999865432 3456677777777766544 4667778999999999999999999988999
Q ss_pred eEecCCCccCHHHHHHHHHHHhCCCcceEEccCC----CCCCCccccChHHHHHhcCCcccccHHhHHHHHHHHH
Q 019309 263 VNIGNPGEFTMLELAETVKELINPGIEIKMVENT----PDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDF 333 (343)
Q Consensus 263 ~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l~~~~~~~ 333 (343)
||+++++.+|+.|+++.+.+..+ +..+...+.. .........|++|+++.+||+|+++++|+|+++++|+
T Consensus 233 ~~~~~~~~~si~~i~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 233 FNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp EEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHHhcC-CCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999988764 3333333221 1222334569999999999999999999999999985
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-34 Score=248.41 Aligned_cols=272 Identities=18% Similarity=0.131 Sum_probs=209.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi~~a 102 (343)
|||||||||||||++|++.|.++| +.|. +++.... ..+|+.|... .++|+|||||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g-~~v~-~~~~~~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~A 62 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG-NLIA-LDVHSKE----------------FCGDFSNPKGVAETVRKLRPDVIVNAA 62 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS-EEEE-ECTTCSS----------------SCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEE-EECCCcc----------------ccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence 899999999999999999999998 6554 4442111 1356665421 2689999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHH
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAET 182 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~ 182 (343)
|...+.....++...+..|+.++.+++++|++.+++++++||..+|+.....+.+|+ .+..|.+.|+.+|..+|+
T Consensus 63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y~~~k~~~e~ 137 (298)
T d1n2sa_ 63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEK 137 (298)
T ss_dssp CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred ccccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchHhhhhhhhhh
Confidence 988777788899999999999999999999999999999999999998888888998 677788999999999999
Q ss_pred HHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc----C
Q 019309 183 LMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG----E 258 (343)
Q Consensus 183 ~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~----~ 258 (343)
.+... .....++|++..|+.. .......+...+..+..+.+. +....+++|++|+++++..+++. .
T Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~~~~~~ 207 (298)
T d1n2sa_ 138 ALQDN----CPKHLIFRTSWVYAGK----GNNFAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRVALNKP 207 (298)
T ss_dssp HHHHH----CSSEEEEEECSEECSS----SCCHHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHHHHHCG
T ss_pred hHHhh----hcccccccccceeecc----CCccchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhhhhccc
Confidence 88654 4456777777666543 233445566666666666654 34678999999999999888763 2
Q ss_pred -CCcceEecCCCccCHHHHHHHHHHHhCC---Ccce---EEccCC-----CCCCCccccChHHHHHhcCCcccccHHhHH
Q 019309 259 -NTGPVNIGNPGEFTMLELAETVKELINP---GIEI---KMVENT-----PDDPRQRKPDISKAKELLGWEPKVKLRDGL 326 (343)
Q Consensus 259 -~~~~~~~~~~~~~s~~e~~~~i~~~~g~---~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~lg~~p~~~~~e~l 326 (343)
..++||+++++.++..|+++.+.+..+. ...+ ...+.. ..++....+|++|+++.|||+|+ +|+|+|
T Consensus 208 ~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~~~gl 286 (298)
T d1n2sa_ 208 EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGV 286 (298)
T ss_dssp GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHH
T ss_pred cccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cHHHHH
Confidence 2789999999999999999998876632 2221 111211 11233446899999999999998 999999
Q ss_pred HHHHHHHHH
Q 019309 327 PLMEEDFRS 335 (343)
Q Consensus 327 ~~~~~~~~~ 335 (343)
+++++++..
T Consensus 287 ~~~i~~~~~ 295 (298)
T d1n2sa_ 287 KRMLTEMFT 295 (298)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=1.7e-29 Score=219.87 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=170.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh---hhcCCCceEEEEcccCCc-----ccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK---KWIGHPRFELIRHDVTEP-----LLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~d~~~~-----~~~~~d~vi 99 (343)
.++||||||||||||++|+++|+++| |+|++++|.......... ..+...+++++.+|+.|. .+.++++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~ 80 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI 80 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhh
Confidence 46789999999999999999999999 999999996544332211 122346799999999886 345899999
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHH
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKR 178 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~ 178 (343)
++++.... ..|...+.+++++|.+.+. +++++||.+++.... . .+..+...|...|.
T Consensus 81 ~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~------~-----~~~~~~~~~~~~~~ 138 (312)
T d1qyda_ 81 SALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIM------E-----HALQPGSITFIDKR 138 (312)
T ss_dssp ECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSC------C-----CCCSSTTHHHHHHH
T ss_pred hhhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCc------c-----cccchhhhhhHHHH
Confidence 99864432 2244456678888888876 899999876654321 1 23334445555555
Q ss_pred HHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcC
Q 019309 179 VAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGE 258 (343)
Q Consensus 179 ~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~ 258 (343)
.+++ +....+++++++||+.+||+...... ..+......++.+.+++++++.+++||++|+|++++.+++.+
T Consensus 139 ~~~~----~~~~~~~~~~i~r~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~ 210 (312)
T d1qyda_ 139 KVRR----AIEAASIPYTYVSSNMFAGYFAGSLA----QLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDP 210 (312)
T ss_dssp HHHH----HHHHTTCCBCEEECCEEHHHHTTTSS----CTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHH----hhcccccceEEeccceeecCCccchh----hHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCc
Confidence 5554 45567999999999999997532211 111111234556777788899999999999999999999876
Q ss_pred C--Ccc-eEecCCCccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 259 N--TGP-VNIGNPGEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 259 ~--~~~-~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
. ++. |++++++.+|+.|+++.+.+.+|.+.+....+
T Consensus 211 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 211 QTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp GGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 5 454 55666778999999999999999887765443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.5e-27 Score=196.30 Aligned_cols=206 Identities=13% Similarity=0.032 Sum_probs=153.6
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCC
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVD 96 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d 96 (343)
..+.|++|+|||||||||||++|+++|+++|. ++|++++|+........ ...++...+|+.+. .+.++|
T Consensus 8 ~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d 82 (232)
T d2bkaa1 8 EDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHD 82 (232)
T ss_dssp HHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCS
T ss_pred HHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccc
Confidence 45667899999999999999999999999994 38999999653332221 24677777888764 456899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDE 175 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~ 175 (343)
+|||++|.. ....+...+...|+.++.+++++|++.++ +|||+||..+++. +...|+.
T Consensus 83 ~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~ 141 (232)
T d2bkaa1 83 VGFCCLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQ 141 (232)
T ss_dssp EEEECCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHH
T ss_pred ccccccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHH
Confidence 999999753 23344566788999999999999999999 7999999987632 2256999
Q ss_pred hHHHHHHHHHHHHHHhCC-ceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHH
Q 019309 176 GKRVAETLMFDYHRQHGI-QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL 254 (343)
Q Consensus 176 ~K~~~E~~~~~~~~~~~~-~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~ 254 (343)
+|..+|+.+.+ .++ .++|+||+.+||++.. .+....++....... .........||++|+|++++.+
T Consensus 142 ~K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 142 VKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQE---SRPGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHHT----TCCSEEEEEECCEEECTTGG---GSHHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHHhhhcccc----ccccceEEecCceeecCCCc---CcHHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHH
Confidence 99999998754 366 4899999999998633 233444444444432 1223334579999999999999
Q ss_pred HhcCC-CcceEec
Q 019309 255 MEGEN-TGPVNIG 266 (343)
Q Consensus 255 ~~~~~-~~~~~~~ 266 (343)
+..+. .+.+.+.
T Consensus 210 ~~~~~~~~~~i~~ 222 (232)
T d2bkaa1 210 VVRPRDKQMELLE 222 (232)
T ss_dssp HTSCCCSSEEEEE
T ss_pred HhcCccCCeEEEc
Confidence 88777 4455554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=8.2e-29 Score=214.60 Aligned_cols=230 Identities=15% Similarity=0.139 Sum_probs=166.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch----hhhcCCCceEEEEcccCCcc-----cCCCCEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL----KKWIGHPRFELIRHDVTEPL-----LIEVDQI 98 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~-----~~~~d~v 98 (343)
.+|||||||||||||++|+++|+++| ++|++++|......... ...+...+++++.+|+.+.. +.+++.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v 80 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 80 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence 47899999999999999999999999 99999999654432211 11122457899999998763 3479999
Q ss_pred EEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhH
Q 019309 99 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGK 177 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K 177 (343)
+|+++.. +..++.++++++...++ ++++.||...... +. ....+...+...+
T Consensus 81 i~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~-------~~-----~~~~~~~~~~~~~ 133 (307)
T d1qyca_ 81 ISTVGSL---------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVD-------NV-----HAVEPAKSVFEVK 133 (307)
T ss_dssp EECCCGG---------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTT-------SC-----CCCTTHHHHHHHH
T ss_pred eeccccc---------------ccchhhHHHHHHHHhccccceeeeccccccc-------cc-----ccccccccccccc
Confidence 9998643 22234567888888888 7888777544321 11 1122222344444
Q ss_pred HHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 178 RVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 178 ~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
...+. +..+.+++++++||+++||+..+. +..++....+++.+.+++.+++.+++||++|+|++++.+++.
T Consensus 134 ~~~~~----~~~~~~~~~~i~r~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~ 204 (307)
T d1qyca_ 134 AKVRR----AIEAEGIPYTYVSSNCFAGYFLRS-----LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDD 204 (307)
T ss_dssp HHHHH----HHHHHTCCBEEEECCEEHHHHTTT-----TTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSC
T ss_pred ccccc----hhhccCCCceecccceecCCCccc-----hhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcC
Confidence 44444 445669999999999999976322 222333445566777788899999999999999999999987
Q ss_pred CC--Ccc-eEecCCCccCHHHHHHHHHHHhCCCcceEEcc
Q 019309 258 EN--TGP-VNIGNPGEFTMLELAETVKELINPGIEIKMVE 294 (343)
Q Consensus 258 ~~--~~~-~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (343)
+. ++. |++++++.+|+.|+++.+.+.+|.+.++...+
T Consensus 205 ~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 205 PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 65 444 55677789999999999999999988776544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-26 Score=189.11 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=147.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~ 101 (343)
|.+|||+||||||+||++++++|+++| ++|++++|+.... .. ....+++++.+|+.|. .+.++|+|||+
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~----~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~ 74 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRL----PS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGS----CS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhc----cc-ccccccccccccccchhhHHHHhcCCCEEEEE
Confidence 456889999999999999999999999 9999999854322 21 1236799999999987 35689999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
+|....... ...+..++.+++++++++++ |||++||..++++... .......|...|..+
T Consensus 75 ~g~~~~~~~-------~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~------------~~~~~~~~~~~~~~~ 135 (205)
T d1hdoa_ 75 LGTRNDLSP-------TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK------------VPPRLQAVTDDHIRM 135 (205)
T ss_dssp CCCTTCCSC-------CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC------------SCGGGHHHHHHHHHH
T ss_pred eccCCchhh-------hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc------------ccccccccchHHHHH
Confidence 985432111 14567789999999999999 8999999998864322 112234688889899
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC-
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN- 259 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~- 259 (343)
|++++ +.+++++|+||+.+++.... ....+..++.....+|+++|+|++++.+++++.
T Consensus 136 e~~l~----~~~~~~tiirp~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~ 194 (205)
T d1hdoa_ 136 HKVLR----ESGLKYVAVMPPHIGDQPLT-----------------GAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEY 194 (205)
T ss_dssp HHHHH----HTCSEEEEECCSEEECCCCC-----------------SCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTT
T ss_pred HHHHH----hcCCceEEEecceecCCCCc-----------------ccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 88774 46999999999999875321 223444566677789999999999999999876
Q ss_pred -CcceEec
Q 019309 260 -TGPVNIG 266 (343)
Q Consensus 260 -~~~~~~~ 266 (343)
+..++++
T Consensus 195 ~g~~~~~s 202 (205)
T d1hdoa_ 195 DGHSTYPS 202 (205)
T ss_dssp TTCEEEEE
T ss_pred CCEEEecC
Confidence 3344443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=4.9e-26 Score=186.82 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=138.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCccchhhhcCCCceEEEEcccC---CcccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVT---EPLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~d~vi~~a~~~ 105 (343)
|||||||||||||++|+++|+++|++ +|+++.|..... ...++....|+. +.....+|+||||+|..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------cccccccccchhhhhhccccchheeeeeeeee
Confidence 89999999999999999999999932 567666643221 123443334432 22334689999999754
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHH
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLM 184 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~ 184 (343)
. ....+...+...|+.++.+++++|++.++ +|+++||..+++. +.+.|..+|..+|+.+
T Consensus 74 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~~l 133 (212)
T d2a35a1 74 I--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQAL 133 (212)
T ss_dssp H--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHHHH
T ss_pred c--cccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhhhc
Confidence 2 33455667889999999999999999999 8999999987642 2256999999999987
Q ss_pred HHHHHHhCC-ceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCCCcce
Q 019309 185 FDYHRQHGI-QIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV 263 (343)
Q Consensus 185 ~~~~~~~~~-~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~ 263 (343)
. +.++ +++|+||+.|||+..... ... . .......+. ...+.+||++|+|++++.+++++..|.+
T Consensus 134 ~----~~~~~~~~I~Rp~~v~G~~~~~~---~~~-~----~~~~~~~~~---~~~~~~i~v~DvA~ai~~~~~~~~~g~~ 198 (212)
T d2a35a1 134 Q----EQGWPQLTIARPSLLFGPREEFR---LAE-I----LAAPIARIL---PGKYHGIEACDLARALWRLALEEGKGVR 198 (212)
T ss_dssp T----TSCCSEEEEEECCSEESTTSCEE---GGG-G----TTCCCC-------CHHHHHHHHHHHHHHHHHHTCCCSEEE
T ss_pred c----ccccccceeeCCcceeCCccccc---HHH-H----HHHHHhhcc---CCCCcEEEHHHHHHHHHHHHcCCCCCCE
Confidence 5 3365 599999999999874321 111 1 111111111 1335679999999999999998888877
Q ss_pred EecC
Q 019309 264 NIGN 267 (343)
Q Consensus 264 ~~~~ 267 (343)
++.+
T Consensus 199 ~~~~ 202 (212)
T d2a35a1 199 FVES 202 (212)
T ss_dssp EEEH
T ss_pred EEEH
Confidence 6643
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=1.5e-23 Score=185.10 Aligned_cols=231 Identities=11% Similarity=0.037 Sum_probs=163.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~~ 101 (343)
.+|+|+|||||||||++|++.|+++| |+|+++.|+... .....+....+++++.+|+.|. .+.++|+++++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~--~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~ 78 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKG--LIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 78 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCS--HHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcch--hhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence 57999999999999999999999999 999999996432 2223334457899999999885 34578888876
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHH
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVA 180 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~ 180 (343)
..... ..++..+.+++++|.+.++ +++++||...... ....+..+|..+|...
T Consensus 79 ~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~--------------~~~~~~~~~~~~k~~~ 132 (350)
T d1xgka_ 79 TTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL--------------YGPWPAVPMWAPKFTV 132 (350)
T ss_dssp CCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG--------------TSSCCCCTTTHHHHHH
T ss_pred ccccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc--------------CCcccchhhhhhHHHH
Confidence 53211 2356677899999999998 8999998754321 1222334577888888
Q ss_pred HHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeEeeeeh-HHHHHHHHHHHhcC
Q 019309 181 ETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE-PLTVQKPGTQTRSFCYV-SDMVDGLIRLMEGE 258 (343)
Q Consensus 181 E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v-~D~a~~i~~~~~~~ 258 (343)
|.++. ..+++++++|++..++.........+.. .....+. .......++..+.++++ +|+++++..+++..
T Consensus 133 ~~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~ 205 (350)
T d1xgka_ 133 ENYVR----QLGLPSTFVYAGIYNNNFTSLPYPLFQM---ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 205 (350)
T ss_dssp HHHHH----TSSSCEEEEEECEEGGGCBSSSCSSCBE---EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC
T ss_pred HHHHH----hhccCceeeeeceeeccccccccccccc---cccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC
Confidence 87654 4578999999998887543221110000 0011111 12333456677788876 79999999999764
Q ss_pred C----CcceEecCCCccCHHHHHHHHHHHhCCCcceEEccC
Q 019309 259 N----TGPVNIGNPGEFTMLELAETVKELINPGIEIKMVEN 295 (343)
Q Consensus 259 ~----~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~ 295 (343)
. +..|++++ +.+|+.|+++.+.+.+|++.++...|.
T Consensus 206 ~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 206 PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 3 44667765 689999999999999999887766653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=8.9e-24 Score=176.92 Aligned_cols=221 Identities=15% Similarity=0.084 Sum_probs=148.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCe--EEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNE--VIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 101 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~~ 101 (343)
.++|||||||||||+++++.|+++| ++ |+.+.|+. ...... ..+++++.+|+.+. .+.++|+|||+
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g-~~v~v~~~~R~~----~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGLVRSA----QGKEKI--GGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTT-TTCEEEEEESCH----HHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CcEEEEEEcCCH----HHHHhc--cCCcEEEEeeeccccccccccccceeeEEE
Confidence 4789999999999999999999999 65 55556532 222221 24788999999887 34589999999
Q ss_pred cCCCCcccc-------------ccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 102 ACPASPIFY-------------KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 102 a~~~~~~~~-------------~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
++....... ..........|+.++.+++..+..... ++.+.|+...+..... ...
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~ 144 (252)
T d2q46a1 76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LNK 144 (252)
T ss_dssp CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GGG
T ss_pred EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------ccc
Confidence 975432111 123345667899999999999998888 7888888766532110 011
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHH
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDM 247 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~ 247 (343)
.....|...+... ..+....+++++++||+++||+....... ..+.... ......++||++|+
T Consensus 145 ~~~~~~~~~~~~~----~~~~~~~~~~~~ilRp~~v~g~~~~~~~~----------~~~~~~~---~~~~~~~~i~~~Dv 207 (252)
T d2q46a1 145 LGNGNILVWKRKA----EQYLADSGTPYTIIRAGGLLDKEGGVREL----------LVGKDDE---LLQTDTKTVPRADV 207 (252)
T ss_dssp GGGCCHHHHHHHH----HHHHHHSSSCEEEEEECEEECSCTTSSCE----------EEESTTG---GGGSSCCEEEHHHH
T ss_pred ccccchhhhhhhh----hhhhhcccccceeecceEEECCCcchhhh----------hhccCcc---cccCCCCeEEHHHH
Confidence 1122344444433 34445679999999999999987432110 0111111 11234679999999
Q ss_pred HHHHHHHHhcCC--CcceEecCCC---ccCHHHHHHHHHHHh
Q 019309 248 VDGLIRLMEGEN--TGPVNIGNPG---EFTMLELAETVKELI 284 (343)
Q Consensus 248 a~~i~~~~~~~~--~~~~~~~~~~---~~s~~e~~~~i~~~~ 284 (343)
|++++.+++++. +++||++++. ..++.|+.+.+.++.
T Consensus 208 a~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 208 AEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 999999998776 5589998743 456777777666543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.3e-18 Score=141.80 Aligned_cols=209 Identities=15% Similarity=0.091 Sum_probs=149.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
..+|++|||||++-||.++++.|.++| ++|++++|+. +.+....+..+.+.+.+|+.++. ..+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~----~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEE----GPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999 9999999853 33333333456888999999873 236
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||...... ..+++...+++|+.++..+.+++.+ .+. +++.+||....
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~----------------- 140 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL----------------- 140 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG-----------------
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc-----------------
Confidence 999999999664322 2235567889999999988887753 334 67777775433
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+..... ...........-++. -+.
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~----~~~~~~~~~~~~pl~---------R~~ 207 (242)
T d1ulsa_ 141 GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV----PEKVREKAIAATPLG---------RAG 207 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS----CHHHHHHHHHTCTTC---------SCB
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC----CHHHHHHHHhcCCCC---------CCC
Confidence 22234679999999999998887664 79999999999987653221 122333333332221 255
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
.++|+|++++.++.... +..+.+.+|..
T Consensus 208 ~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 67999999999996543 44677766644
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.80 E-value=2.5e-18 Score=143.11 Aligned_cols=213 Identities=16% Similarity=0.121 Sum_probs=144.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.++|.++||||++-||.++++.|.++| ++|++.+|......+...+.. ..++..+.+|++|+. +.+
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAEAAIRNL-GRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHHHc-CCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 378999999999999999999999999 999999986432222221222 357889999999873 236
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||...... ..++++..++.|+.++..+.+++ ++.+. ++|++||.....
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---------------- 144 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------------- 144 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------------
Confidence 999999999764322 23455678899999988887766 44554 999999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... .......... ... ....-+.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~-~~~-------~~l~r~~ 213 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS---ALSAMFDVLP-NML-------QAIPRLQ 213 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------CTT-------SSSCSCC
T ss_pred cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccc---ccchhHHHHH-HHh-------ccCCCCC
Confidence 3334467999999999999888865 479999999998876642111 1111111110 000 0111256
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.++|+|++++.++.... .| .+.+.+|
T Consensus 214 ~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 214 VPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp CTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 78999999999986543 34 6666655
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=1.9e-18 Score=142.79 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=142.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.++|++|||||++-||.++++.|.++| ++|++++|+... ..++..+.+|++|+. +.+
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~r~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 73 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGA----------PKGLFGVEVDVTDSDAVDRAFTAVEEHQGP 73 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCC----------CTTSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcch----------hcCceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 388999999999999999999999999 999999985422 135677899999873 236
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||...... ..+++...+++|+.++..+..++ ++.+. ++|++||...+.
T Consensus 74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 137 (237)
T d1uzma1 74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------------- 137 (237)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------
T ss_pred ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc----------------
Confidence 999999999654322 23455677899999888776644 45565 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+..+.... +...........-++ .-+.
T Consensus 138 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl---------~R~~ 204 (237)
T d1uzma1 138 GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIPA---------KRVG 204 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCTT---------CSCB
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc----cCHHHHHHHHhcCCC---------CCCc
Confidence 2233467999999999999888866 47999999999887643110 001122222221111 1256
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~ 268 (343)
.++|+|++++.++.... +..+.+.+|
T Consensus 205 ~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 205 TPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 78999999999996543 346677665
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.79 E-value=1.3e-18 Score=145.10 Aligned_cols=213 Identities=13% Similarity=0.025 Sum_probs=149.3
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------c
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 92 (343)
...+|.+|||||++-||.++++.|.++| ++|++++|+...-.+....+.. ..++..+.+|++++. +
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999 9999999853222221222211 246889999999873 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGN 163 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~ 163 (343)
.++|++||+||...... ..+++...++.|+.++..+..++ ++.+. ++|++||...+.
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~-------------- 151 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------------- 151 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC--------------
Confidence 47999999998654332 22455677889998888877765 44555 999999987652
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 164 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 164 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.... ......+.....-++. -
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~----~~~~~~~~~~~~~pl~---------R 216 (251)
T d2c07a1 152 --GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIPAG---------R 216 (251)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCTTS---------S
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc----cCHHHHHHHHhcCCCC---------C
Confidence 2333467999999999999988865 47999999999998765321 1233334343332221 2
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+..++|+|++++.++.... .| .+.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 5678999999999996543 44 6666654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=8e-19 Score=146.04 Aligned_cols=215 Identities=14% Similarity=0.073 Sum_probs=147.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+||++|||||++-||.++++.|.++| ++|++++|+.+. ....+ ..+..++.+|++++. +.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~--~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG--KEVAE---AIGGAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH--HHHHH---HHTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH--HHHHH---HcCCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999999 999999986422 11222 235678899999863 236
Q ss_pred CCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++||+||...... ..++++..+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~---------------- 140 (248)
T d2d1ya1 77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------------- 140 (248)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------------
Confidence 999999999664332 223456788999999998888774 4444 899999987752
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC--CCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI--DDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.... ..........+......+ ..-
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p---------l~R 211 (248)
T d2d1ya1 141 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA---------LRR 211 (248)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST---------TSS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC---------CCC
Confidence 3334567999999999999888876 47999999998876542000 000000001111111111 112
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
+..++|+|++++.++.... +..+.+.+|-+.|
T Consensus 212 ~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 212 LGKPEEVAEAVLFLASEKASFITGAILPVDGGMTAS 247 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred CcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcccc
Confidence 5678999999999986443 4467777765443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1e-18 Score=145.07 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=148.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++|+++||||++-||.++++.|.++| ++|++++|+.+.. +.+.+.+. .+...+.+|++++. ..++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGA-QAISDYLG-ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHH-HHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHHHhC-CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 68999999999999999999999999 9999999853221 22222222 46788999999863 2369
Q ss_pred CEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||....... .++....+++|+.++..+.+++ ++.+. ++|++||...+. +
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~----------------~ 143 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM----------------G 143 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------C
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------------C
Confidence 999999986643332 2355677899999998888877 34454 999999987652 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.... ............-++ .-+..
T Consensus 144 ~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~----~~~~~~~~~~~~~pl---------~R~~~ 210 (243)
T d1q7ba_ 144 NGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA----LSDDQRAGILAQVPA---------GRLGG 210 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTCTT---------SSCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh----hhhhHHHHHHhcCCC---------CCCCC
Confidence 333467999999999999888866 47999999999886543111 112222222222211 12567
Q ss_pred hHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 244 VSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
++|+|++++.++.... +..+++.+|-
T Consensus 211 pedvA~~v~fL~S~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 211 AQEIANAVAFLASDEAAYITGETLHVNGGM 240 (243)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 8999999999996543 4467776653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=4.4e-18 Score=140.94 Aligned_cols=206 Identities=16% Similarity=0.086 Sum_probs=147.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++|+++||||++.||.++++.|.++| ++|++.+|+..... .+.+.+. ..+.++.+|++++. ...+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGK-AMAAELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHHTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHhh-CcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999 99999998542221 1222222 46888999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||...... ..+++...+++|+.++..+.+++ ++.+. ++|++||...+. +
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----------------~ 145 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA----------------G 145 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc----------------c
Confidence 99999999765322 23455678899999988887765 34444 899999987652 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCY 243 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 243 (343)
......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+....... .-... ...-+..
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----------~~~~~-------pl~R~~~ 207 (244)
T d1nffa_ 146 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPE-----------DIFQT-------ALGRAAE 207 (244)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCT-----------TCSCC-------SSSSCBC
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhH-----------HHHhc-------cccCCCC
Confidence 334467999999999999988866 47999999999887654211100 00011 1123678
Q ss_pred hHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 244 VSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 244 v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
++|+|++++.++.... .| .+.+.+|..
T Consensus 208 p~diA~~v~fL~s~~s~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 208 PVEVSNLVVYLASDESSYSTGAEFVVDGGTV 238 (244)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhChhhCCCcCCEEEECCCee
Confidence 9999999999996433 44 677766543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.78 E-value=4.3e-18 Score=141.92 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=145.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++|++|||||++-||.++++.|.++| ++|++++|+.+...+...+ + ..++.++.+|++++. +.++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARE-L-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-T-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-h-CCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 68999999999999999999999999 9999999854222222222 1 246889999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||...... ..++....++.|+.++..+.+++. +.+. ++|++||...+. +
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~----------------~ 144 (254)
T d1hdca_ 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------------G 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------------c
Confidence 99999998765332 223455678999999988888763 4454 999999987652 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC-CceeEeee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKP-GTQTRSFC 242 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 242 (343)
......|+.+|...+.+.+.++.+ +|+++..+.||.+..+. . ........-..... +..++ ..
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~--------~----~~~~~~~~~~~~~~~pl~R~-g~ 211 (254)
T d1hdca_ 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM--------T----AETGIRQGEGNYPNTPMGRV-GN 211 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH--------H----HHHTCCCSTTSCTTSTTSSC-B-
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc--------c----hhcCHHHHHHHHhCCCCCCC-CC
Confidence 334467999999999999988866 47999999999886532 1 11111110000000 11111 13
Q ss_pred ehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
.++|+|++++.++.... +..+.+.+|-
T Consensus 212 ~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 212 EPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 57999999999996543 4477777664
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.78 E-value=1.4e-17 Score=140.34 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=150.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+|++|||||++-||.++++.|.++| ++|++++|+.....+....+.....+.++.+|++++. +.++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 83 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999 9999999854332222233333456888999999873 2369
Q ss_pred CEEEEecCCCCcc---c---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~~---~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
|++||+||..... . ..++.+..+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 84 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~--------------- 148 (268)
T d2bgka1 84 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT--------------- 148 (268)
T ss_dssp CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC---------------
T ss_pred ceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccc---------------
Confidence 9999999965322 1 223456778999999888877663 4454 899999987652
Q ss_pred CCCCCC-CchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 165 NPIGVR-SCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 165 ~~~~~~-~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
...+. ..|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+.........-...-....... .+ ..-
T Consensus 149 -~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~~-------~gr 219 (268)
T d2bgka1 149 -AGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA-NL-------KGT 219 (268)
T ss_dssp -CCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC-SS-------CSC
T ss_pred -cccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcc-cc-------CCC
Confidence 11222 36999999999999888866 4799999999999877532211111111111111111 11 012
Q ss_pred eeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 241 FCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
+..++|+|++++.++.... +..+.+.+|-+.
T Consensus 220 ~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 220 LLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTR 254 (268)
T ss_dssp CCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhChhhCCccCceEEECcCccc
Confidence 5678999999999996543 447777776544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.78 E-value=3.7e-18 Score=143.37 Aligned_cols=222 Identities=12% Similarity=0.062 Sum_probs=145.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc-----------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL----------- 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~----------- 91 (343)
++++|++|||||++-||.++++.|.++| ++|++.+|+.....+.+...+ ...++.++.+|++++.
T Consensus 1 ~L~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 1 MLKGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 999999985422222222211 1246888999999873
Q ss_pred -cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+.++|++||+||...... ..+++...+++|+.++..+..++ ++.+. ++|++||...+.
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~------------ 147 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------------ 147 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee------------
Confidence 236999999999664332 22355677899988888776655 45555 999999987652
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe---EEecCC
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPL---TVQKPG 235 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+.... .+............. ......
T Consensus 148 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 148 ----ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK----QISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHH
T ss_pred ----ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh----hhhhhhhhcCCChHHHHHHHHHhc
Confidence 33344679999999999999888764 7999999999887654210 111100000000000 000000
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
....-+..++|+|++++.++.... .| .+.+.+|
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 011135778999999999996533 34 6666665
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=7.6e-18 Score=140.38 Aligned_cols=215 Identities=18% Similarity=0.104 Sum_probs=149.4
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------ 91 (343)
..++|++|||||++.||+++++.|.++| ++|++++|+.....+...++.. ..++..+.+|++++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 9999999854332222222211 246788999999873
Q ss_pred cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
+.++|++||+||...... ..+++...+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~------------- 147 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE------------- 147 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc-------------
Confidence 237999999999654322 233556778899999988877764 3444 899999865421
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCce
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (343)
.+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+... ... ........+.-++.
T Consensus 148 --~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~----~~~~~~~~~~~~~~~~pl~------- 214 (251)
T d1vl8a_ 148 --VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIPLG------- 214 (251)
T ss_dssp --CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCTTS-------
T ss_pred --ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHH----hccCCHHHHHHHHhcCCCC-------
Confidence 12223457999999999999888865 4799999999998776421 111 12333333332221
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
-+..++|+|++++.++.... .| .+.+.+|-
T Consensus 215 --R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 215 --RTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp --SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 24567999999999986543 34 66766653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.9e-18 Score=139.75 Aligned_cols=211 Identities=18% Similarity=0.144 Sum_probs=147.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc--------ccCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP--------LLIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~d~v 98 (343)
..||++|||||++.||.++++.|.++| ++|++++|+...-. .+... ..++..+.+|+.|+ .+.++|++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~-~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLD-SLVRE--CPGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHH-HHHHh--cCCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 478999999999999999999999999 99999998532211 11222 24688899999987 34479999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH-----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~-----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
||+||...... ..++....+++|+.++..+..++.+ .+. ++|++||..... +..
T Consensus 81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~~ 144 (244)
T d1pr9a_ 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------ccc
Confidence 99998665332 2345567789999988887776532 233 899999987652 333
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...+.+.+.++.+ +|+++..+.||.+..+........ ....+.....-++ .-+..++
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~pe 213 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD--PHKAKTMLNRIPL---------GKFAEVE 213 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCS--HHHHHHHHTTCTT---------CSCBCHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccC--hHHHHHHHhcCCC---------CCCcCHH
Confidence 3467999999999999888865 479999999998876532111000 1222223332211 1267789
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
|+|++++.++.... .| .+.+.+|
T Consensus 214 evA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 214 HVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 99999999986543 44 6666654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=3.3e-18 Score=143.31 Aligned_cols=216 Identities=16% Similarity=0.092 Sum_probs=136.2
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------ 91 (343)
+..++|++|||||++-||.++++.|.++| ++|++++|+.....+...... ...++..+.+|++++.
T Consensus 4 F~LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999 999999985432222222211 2346889999999762
Q ss_pred c-CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 L-IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 ~-~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+ ..+|++||+||...... ..++....+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~------------ 150 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV------------ 150 (259)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc------------
Confidence 1 24999999999654322 234556788999999888887663 4454 999999987642
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+..... .-....+..... ++ .
T Consensus 151 ----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~--~p-------l 214 (259)
T d1xq1a_ 151 ----SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISR--KP-------L 214 (259)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------
T ss_pred ----cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh---chHHHHHHHHhC--CC-------C
Confidence 3333467999999999999888866 479999999998876542110 001111111111 11 1
Q ss_pred EeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
.-+..++|+|.+++.++.... .| .+.+.+|-
T Consensus 215 ~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 215 GRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp ---CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 225678999999999986433 33 56666553
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=5.3e-18 Score=140.54 Aligned_cols=212 Identities=18% Similarity=0.145 Sum_probs=147.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~v 98 (343)
..||++|||||++.||+++++.|.++| ++|++++|+..... .+.+ +..++..+.+|+.++. +.++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~-~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLV-SLAK--ECPGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH-HHHH--HSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHH--hcCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 368999999999999999999999999 99999998532211 1111 2347889999999873 3479999
Q ss_pred EEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH-----cCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~-----~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|||||...... ..++....+++|+.++..+.+++.. .+. ++|++||...+. +..
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 142 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 142 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence 99999654322 2334556788999999888776532 233 899999987652 333
Q ss_pred CCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+........ ...........++ .-+..++
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~pe 211 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD--PEFARKLKERHPL---------RKFAEVE 211 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC--HHHHHHHHHHSTT---------SSCBCHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCC--HHHHHHHHhcCCC---------CCCcCHH
Confidence 3467999999999999998876 479999999998876421100000 1222222222211 1256789
Q ss_pred HHHHHHHHHHhcCC----CcceEecCCC
Q 019309 246 DMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 246 D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
|+|++++.++.... +..+.+.+|-
T Consensus 212 eva~~v~fL~S~~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 212 DVVNSILFLLSDRSASTSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred HHHHHHHHHhCchhcCcCCceEEeCcch
Confidence 99999999986543 4467776653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.76 E-value=1.4e-18 Score=145.04 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=146.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+|++|||||++-||+++++.|.++| ++|++++|+.+...+....+....++.++.+|+.|+. +.++
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 83 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999 9999999854322222222223457899999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~--~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||+||...... ..+++...+++|+.++..+..++. +.+ .++|++||...+-
T Consensus 84 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~---------------- 147 (251)
T d1zk4a1 84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---------------- 147 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS----------------
T ss_pred eEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec----------------
Confidence 99999998764322 223455688999999988888764 334 2799999987642
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+....... ...... ....+++ .-
T Consensus 148 ~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~--~~~~~pl-------~R 215 (251)
T d1zk4a1 148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG---AEEAMS--QRTKTPM-------GH 215 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT---HHHHHT--STTTCTT-------SS
T ss_pred cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC---HHHHHH--HHhCCCC-------CC
Confidence 2233467999999999988877654 47999999999886543111000 011111 1111111 12
Q ss_pred eeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+..++|+|++++.++.... .| .+.+.+|
T Consensus 216 ~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 216 IGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 6788999999999986543 44 6676665
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.76 E-value=9.6e-18 Score=140.51 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=149.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
..+|+++||||++.||.++++.|.++| ++|++.+|+.+...+.+.+.+. ..++..+.+|++++. +
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999 9999999864322222222221 246788999999873 2
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC--eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA--RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~--r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||...... ..++....+++|+.++..+.+++ .+.+. .+|++||...+.
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------- 150 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------- 150 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-------------
Confidence 36999999999764332 22355677899999888877665 34443 588999987642
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCce
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV--SNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+..+... ... ........+.-++
T Consensus 151 ---~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~----~~~~~~~~~~~~~~~~pl-------- 215 (261)
T d1geea_ 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA----EKFADPEQRADVESMIPM-------- 215 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH----HHHHSHHHHHHHHTTCTT--------
T ss_pred ---cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHh----hhcCCHHHHHHHHhcCCC--------
Confidence 33334679999999999998888664 799999999998765411 111 1122222222111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.-+..++|+|++++.++.... +..+.+.+|..+
T Consensus 216 -~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 216 -GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeeC
Confidence 125678999999999996543 447777776543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.76 E-value=7.3e-18 Score=141.10 Aligned_cols=218 Identities=15% Similarity=0.133 Sum_probs=149.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh---hhcCCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK---KWIGHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~------------~ 92 (343)
.+|+++||||++-||.++++.|.++| ++|++.+|+.....+... ......++..+.+|++|+. +
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999 999999985322111111 1122346888999999873 2
Q ss_pred CCCCEEEEecCCCCcc--c---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~--~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||..... . ..+++...+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------- 148 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------- 148 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc-------------
Confidence 3699999999965321 1 234556788999999999888663 3333 899999987652
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEecCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID----DGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+..+..... ................++
T Consensus 149 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl------ 219 (258)
T d1iy8a_ 149 ---GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPS------ 219 (258)
T ss_dssp ---BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTT------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCC------
Confidence 33345679999999999998888654 79999999998865421000 000011122222222211
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.-+..++|+|++++.++.... +..+.+.+|.+.
T Consensus 220 ---~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~sa 256 (258)
T d1iy8a_ 220 ---KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 256 (258)
T ss_dssp ---CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred ---CCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchhc
Confidence 125678999999999996543 446777776543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.76 E-value=2.1e-17 Score=138.26 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=148.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++|+++||||++.||.++++.|.++| ++|++++|+.+...+...+ + ..++..+.+|++++. +.++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~-~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAE-I-GPAACAIALDVTDQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-h-CCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999 9999999854322222222 2 257888999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----Hc-CC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~-~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||+||...... ..+++...++.|+.++..+..++. +. .. ++|++||...+-
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------------- 144 (256)
T d1k2wa_ 81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---------------- 144 (256)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc----------------
Confidence 99999999654322 223456778999998888877542 22 23 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHH-----------HHHHHcCCCeEE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNF-----------IAQALRGEPLTV 231 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 231 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.. ....... .+.+...-++
T Consensus 145 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Pl-- 218 (256)
T d1k2wa_ 145 GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHW----DGVDAKFADYENLPRGEKKRQVGAAVPF-- 218 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTH----HHHHHHHHHHHTCCTTHHHHHHHHHSTT--
T ss_pred ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhh----hhhhhhhhhhccCChHHHHHHHHhcCCC--
Confidence 3334467999999999999888865 479999999998876641 0111111 1111111111
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
.-+..++|+|.+++.++.... +..+.+.+|..+|
T Consensus 219 -------gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 -------GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp -------SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred -------CCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhhC
Confidence 125678999999999886443 4477887776553
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.3e-18 Score=140.84 Aligned_cols=214 Identities=15% Similarity=0.139 Sum_probs=149.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 93 (343)
..+|++|||||++-||.++++.|.++| ++|++.+|+.+...+...++.. ..++.++.+|++++. +.
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999 9999999854322221111111 246888999999873 23
Q ss_pred CCCEEEEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
++|++||+||...... ..+++...+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~---------------- 151 (255)
T d1fmca_ 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc----------------
Confidence 6999999999654322 233456778999998888777653 4445 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... +-........+.-++. -+.
T Consensus 152 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~e~~~~~~~~~pl~---------R~g 219 (255)
T d1fmca_ 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPIR---------RLG 219 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSSC---------SCB
T ss_pred cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc---CCHHHHHHHHhcCCCC---------CCc
Confidence 3334467999999999999888866 479999999998876532111 1122333333332221 256
Q ss_pred ehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 243 YVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
.++|+|++++.++.... .| .+.+.+|.
T Consensus 220 ~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 77999999999996543 44 67777664
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.3e-17 Score=138.80 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=148.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.||++|||||++-||.++++.|.++| ++|++++|+.+.. +.+.+. ..++.++.+|++|+. +.++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~-~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGG-RALEQE--LPGAVFILCDVTQEDDVKTLVSETIRRFGRL 80 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHHh--cCCCeEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999 9999999853221 122222 246889999999863 2369
Q ss_pred CEEEEecCCCCc-cc----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNP 166 (343)
Q Consensus 96 d~vi~~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~ 166 (343)
|++||+||.... .. ..+++...++.|+.++..+.+++. +.+.++|++||...+. +
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~----------------~ 144 (250)
T d1ydea1 81 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI----------------G 144 (250)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------C
T ss_pred CEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------------c
Confidence 999999995432 11 223456778999999988887664 4455999999987652 3
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCC--CCccHHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 167 IGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNI--DDGRVVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 167 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
......|+.+|...+.+.+.++.+ +|+++..+.||.|-.+.... .........++......++. -+
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~---------R~ 215 (250)
T d1ydea1 145 QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLG---------RM 215 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTS---------SC
T ss_pred ccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCC---------CC
Confidence 333467999999999999888876 47999999999886542100 00000112233333322221 25
Q ss_pred eehHHHHHHHHHHHhcCC---CcceEecCCCc
Q 019309 242 CYVSDMVDGLIRLMEGEN---TGPVNIGNPGE 270 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~ 270 (343)
..++|+|++++.++.... +..+.+.+|..
T Consensus 216 g~p~eva~~v~fL~Sda~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 216 GQPAEVGAAAVFLASEANFCTGIELLVTGGAE 247 (250)
T ss_dssp BCHHHHHHHHHHHHHHCTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhCccCCCcCCeEEECCCcc
Confidence 678999999999886433 34677766644
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.75 E-value=1.7e-17 Score=139.02 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=150.0
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------ 91 (343)
+...+|++|||||++-||.++++.|.++| ++|++.+|+.+.-.+....+. ...++.++.+|++++.
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999 999999985433222222221 1346788999999862
Q ss_pred cC-CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 LI-EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 ~~-~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+. .+|++||+||...... ..++....+++|+.++..+..++. +.+. ++|++||.....
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 150 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------------ 150 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc------------
Confidence 22 4899999999654322 223456788999998888877663 4444 899999987642
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCce
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... ........+..+...-++.
T Consensus 151 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~------- 219 (259)
T d2ae2a_ 151 ----AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR------- 219 (259)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC-------
T ss_pred ----ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC-------
Confidence 3334467999999999999998876 479999999998865431100 0111122333333332221
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
-+..++|+|++++.++.... .| .+.+.+|
T Consensus 220 --R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 220 --RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 25678999999999986543 34 6666655
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.74 E-value=2.3e-17 Score=137.97 Aligned_cols=217 Identities=13% Similarity=0.056 Sum_probs=147.8
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------ 92 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 92 (343)
...+|++|||||++-||.++++.|+++| ++|++++|+.....+...... ....+.++.+|+.+...
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999 999999985422222222211 13467788999998631
Q ss_pred -CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..+|+++|+||...... ..++....+++|+.++..+..++. +.+. ++|++||.....
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------------- 148 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------- 148 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------------
T ss_pred CCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-------------
Confidence 24899999998664322 334556788999999888877654 3444 899999988752
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCce
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.++ |+++-.+.||.+..+..... ........+..+....++
T Consensus 149 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl-------- 217 (258)
T d1ae1a_ 149 ---ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM-------- 217 (258)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT--------
T ss_pred ---ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC--------
Confidence 33344679999999999999988764 78999999999987642111 000112233333332211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.-+...+|+|.+++.++.... .| .+.+.+|
T Consensus 218 -gR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 218 -GRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 126788999999999995433 44 5666654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.74 E-value=2.7e-17 Score=137.91 Aligned_cols=214 Identities=16% Similarity=0.085 Sum_probs=145.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~ 94 (343)
.+|++|||||++-||.++++.|.++| ++|++++|+.+...+....+.. ..++..+.+|++++. +.+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999 9999999854322222222211 246888999999863 236
Q ss_pred CCEEEEecCCCCc-c-c---cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASP-I-F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 95 ~d~vi~~a~~~~~-~-~---~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
+|++||+||.... . . ..+++...++.|+.++..+..++. +.+. ++|++||...+.
T Consensus 83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~--------------- 147 (260)
T d1zema1 83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------------- 147 (260)
T ss_dssp CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS---------------
T ss_pred CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc---------------
Confidence 9999999996532 1 1 223456778899999888877763 3444 999999987652
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCC------------CCccHHHHHHHHHHcCCCe
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNI------------DDGRVVSNFIAQALRGEPL 229 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~------------~~~~~~~~~~~~~~~~~~~ 229 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.|-.+.... ..........+.+...-++
T Consensus 148 -~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 226 (260)
T d1zema1 148 -GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPM 226 (260)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTT
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCC
Confidence 33334679999999999998888764 7999999999887652100 0000011122222222211
Q ss_pred EEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecC
Q 019309 230 TVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGN 267 (343)
Q Consensus 230 ~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~ 267 (343)
.-+..++|+|++++.++.... .| .+.+.+
T Consensus 227 ---------~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 259 (260)
T d1zema1 227 ---------RRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 259 (260)
T ss_dssp ---------SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred ---------CCCcCHHHHHHHHHHHhCchhcCccCCeEEeCC
Confidence 125677999999999997543 33 555544
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.74 E-value=1.9e-17 Score=137.39 Aligned_cols=209 Identities=14% Similarity=0.028 Sum_probs=144.5
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------cCCCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------LIEVD 96 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~~~~d 96 (343)
.||||||++-||+++++.|.++| ++|++.+++.....+.+.+.+. ..++.++.+|+.++. ..++|
T Consensus 3 V~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 59999999999999999999999 9998876533222222222221 246788999999873 23799
Q ss_pred EEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 97 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 97 ~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
++||+||...... ..++++..+++|+.++..+.+++ ++.+. ++|++||...+- +.
T Consensus 82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------------~~ 145 (244)
T d1edoa_ 82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------GN 145 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------CC
T ss_pred ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------------CC
Confidence 9999998664322 23455678899999988887766 34454 999999987652 23
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeeh
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYV 244 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 244 (343)
.....|+.+|...+.+.+.++.++ |+++..+.||.+-.+... .+.....+.....-++. -+..+
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl~---------R~~~p 212 (244)
T d1edoa_ 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA----KLGEDMEKKILGTIPLG---------RTGQP 212 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH----TTCHHHHHHHHTSCTTC---------SCBCH
T ss_pred CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH----HhhHHHHHHHHhcCCCC---------CCcCH
Confidence 334679999999999998888764 799999999988654311 11122333333322221 25678
Q ss_pred HHHHHHHHHHHhcCC-----CcceEecCCC
Q 019309 245 SDMVDGLIRLMEGEN-----TGPVNIGNPG 269 (343)
Q Consensus 245 ~D~a~~i~~~~~~~~-----~~~~~~~~~~ 269 (343)
+|+|+++..++..+. +..+.+.+|-
T Consensus 213 ~dvA~~v~fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 213 ENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence 999999999864322 3466666653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=8e-17 Score=132.88 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=143.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc------ccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~d~vi~~ 101 (343)
++|++|||||++-||+++++.|.++| ++|++++|+. +.+.. ...+++.+|+.+. .+.++|++||+
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r~~----~~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNE----ELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH----HHHHh----cCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 68999999999999999999999999 9999999842 22222 3556788999764 34579999999
Q ss_pred cCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 019309 102 ACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSC 172 (343)
Q Consensus 102 a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~ 172 (343)
||....... .++....++.|+.++..+.+++ ++.+. ++|++||..... +......
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~----------------~~~~~~~ 137 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PIENLYT 137 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CCTTBHH
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc----------------ccccccc
Confidence 986543222 2344567789988887777665 44555 899999987652 3344467
Q ss_pred hHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHH-HHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 173 YDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVV-SNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 173 Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
|+.+|...+.+.+.++.+. |+++-.+.||.+-.+... ... ........+.-++ .-+..++|+|
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~----~~~~~~~~~~~~~~~pl---------~R~~~pediA 204 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVK----ELLSEEKKKQVESQIPM---------RRMAKPEEIA 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHH----HHSCHHHHHHHHTTSTT---------SSCBCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhh----hhcCHHHHHHHHhcCCC---------CCCcCHHHHH
Confidence 9999999998888887654 799999999988765411 111 1122222222111 1256789999
Q ss_pred HHHHHHHhcCC----CcceEecCC
Q 019309 249 DGLIRLMEGEN----TGPVNIGNP 268 (343)
Q Consensus 249 ~~i~~~~~~~~----~~~~~~~~~ 268 (343)
++++.++.... +..+.+.+|
T Consensus 205 ~~v~fL~S~~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 205 SVVAFLCSEKASYLTGQTIVVDGG 228 (234)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhChhhcCCcCcEEEECcc
Confidence 99999986443 446667665
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.73 E-value=3e-17 Score=137.48 Aligned_cols=214 Identities=15% Similarity=0.070 Sum_probs=147.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
||.+|||||++-||.++++.|.++| ++|++++|+.+.-.+....+. ...++.++.+|++++. +.++
T Consensus 2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 6788999999999999999999999 999999985322222112111 1246888999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH------cCC-eEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~------~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
|++|||||...... ..++....+++|+.++..+.+++.+ .+. ++|.+||...+.
T Consensus 81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~--------------- 145 (257)
T d2rhca1 81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ--------------- 145 (257)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS---------------
T ss_pred CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc---------------
Confidence 99999999654322 2335567889999999999998753 333 899999987652
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCC-------CccHHHHHHHHHHcCCCeEEecC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNID-------DGRVVSNFIAQALRGEPLTVQKP 234 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+-.+..... ...............-++
T Consensus 146 -~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Pl----- 219 (257)
T d2rhca1 146 -GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI----- 219 (257)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTT-----
T ss_pred -ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCC-----
Confidence 33344679999999999999998774 68999999988855421000 000011222222222211
Q ss_pred CceeEeeeehHHHHHHHHHHHhcCC---C-cceEecCC
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEGEN---T-GPVNIGNP 268 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~~~---~-~~~~~~~~ 268 (343)
.-+..++|+|++++.++.... . ..+.+.+|
T Consensus 220 ----gR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 220 ----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp ----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 125678999999999996433 3 46666654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.73 E-value=2.4e-17 Score=136.49 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=146.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
.+|++|||||++.||.++++.|.++| ++|++..|+.....+...+ + ..++.++.+|+.++. +.++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAA-L-EAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-C-CSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-c-CCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999 9999999854322222222 2 246788999999873 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcCC--e-EEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA--R-ILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r-~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|++||+||...... ..++....++.|+.++..+..++...-. + ++.+||.+.. +..
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-----------------~~~ 143 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-----------------GAF 143 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-----------------CHH
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-----------------ccc
Confidence 99999998654322 2234567789999999999998866533 3 4444444321 222
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
....|+.+|...|.+.+.++.+. |+++-.+.||.+-.+... ...........+..++. -+..++
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~----~~~~~~~~~~~~~~p~~---------r~~~p~ 210 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA----GLPPWAWEQEVGASPLG---------RAGRPE 210 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT----TSCHHHHHHHHHTSTTC---------SCBCHH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH----hhhHhHHHHHHhCCCCC---------CCcCHH
Confidence 34569999999999999998875 599999999988655321 11223333444432221 256789
Q ss_pred HHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 246 DMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 246 D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
|+|++++.++.... .| .+.+.+|.+
T Consensus 211 dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 211 EVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 99999999997543 44 667766644
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=2.2e-17 Score=138.41 Aligned_cols=217 Identities=14% Similarity=0.024 Sum_probs=144.5
Q ss_pred ccCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------ 91 (343)
..++|++|||||+| -||.+++++|.++| ++|++.+|...................++.+|+.++.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence 45789999999998 69999999999999 9998888753221111111112346778999999873
Q ss_pred cCCCCEEEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+.++|++||+||...... ...+....++.|+.++..+..++... +.++|++||.....
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----------- 152 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------- 152 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----------
Confidence 236999999998653211 12234457789999999888887643 23799999987652
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++-.+.|+.+..+...... ......+...+.-++.
T Consensus 153 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~--~~~~~~~~~~~~~pl~------- 218 (256)
T d1ulua_ 153 -----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP--GFTKMYDRVAQTAPLR------- 218 (256)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------CHHHHHHHHHHSTTS-------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh--hhHHHHHHHHhcCCCC-------
Confidence 3334467999999999999888876 4799999999988776432110 1122333333322211
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---C-cceEecCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---T-GPVNIGNPGE 270 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~-~~~~~~~~~~ 270 (343)
-+..++|+|++++.++.... . ..+.+.+|..
T Consensus 219 --R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 219 --RNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --CCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 15667999999999997543 3 4677766644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.73 E-value=8.1e-18 Score=140.40 Aligned_cols=209 Identities=19% Similarity=0.192 Sum_probs=143.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
++|+++||||++-||.++++.|.++| ++|++.+|+..... .+...+. .+..++.+|+.++. +.++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~-~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQ-QLAAELG-ERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHH-HHHHHHC-TTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHHhC-CCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999 99999998532221 2222222 46788899999863 2369
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|++||+||...... ..+++...+++|+.++..+.+++. +.+.++|++||...+. +.
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------------~~ 145 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------PI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------CC
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------------Cc
Confidence 99999999664322 223456788999988888777664 3344899999987652 33
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHH-----HHHHcCCCeEEecCCce
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFI-----AQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 237 (343)
.....|+.+|...+.+.+.++.+. ++++-.+.||.+..+.. ...+ +....... ....
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~--------~~~~~~~~~~~~~~~~~-----~~~~ 212 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMM--------QASLPKGVSKEMVLHDP-----KLNR 212 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHH--------HHHSCTTCCHHHHBCBT-----TTBT
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhH--------HhhCcchhhHHHHHhCc-----cccc
Confidence 344679999999998888777542 48899999998865421 1100 11111110 0001
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
.-.+..++|+|++++.++.... .| .+++.++
T Consensus 213 ~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 1136778999999999996543 44 5666554
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.4e-17 Score=139.70 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=146.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh---c---CCCceEEEEcccCCcc---------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW---I---GHPRFELIRHDVTEPL--------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~~~d~~~~~--------- 91 (343)
.++|++|||||++-||.++++.|.++| ++|++++|+.....+...++ . ...++..+.+|++++.
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 478999999999999999999999999 99999998543222211111 1 1246888999999873
Q ss_pred ---cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEeCCcccCCCCCCCCCCC
Q 019309 92 ---LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 ---~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~----~~~-r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
+.++|++||+||...... ..++....+++|+.++..+..++.. .+. ++|.+||....
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~----------- 157 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----------- 157 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-----------
Confidence 236999999998654322 2235567789999999888887643 333 67777765432
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.......|+.+|...+.+.+.++.+. |+++-.+.||.|..+.........-..+.......-++
T Consensus 158 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl------- 224 (297)
T d1yxma1 158 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA------- 224 (297)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT-------
T ss_pred ------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC-------
Confidence 22234579999999999999988764 79999999999877642111111111111111111111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
.-+..++|+|.+++.++.... +..+.+.+|..+
T Consensus 225 --gR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 225 --KRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp --SSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred --CCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 125678999999999996543 447777776443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.4e-17 Score=139.32 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=145.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------~ 92 (343)
.||++|||||++-||.++++.|.++| ++|++++|+.+...+....+. ...++.++.+|++++. +
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999 999999985433222222221 2346888999999873 2
Q ss_pred CCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHH----HcC----CeEEEEeCCcccCCCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVG----ARILLTSTSEVYGDPLIHPQPETYWGNV 164 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~----~~~----~r~i~~SS~~v~~~~~~~~~~e~~~~~~ 164 (343)
.++|++||+||... ..+....++.|+.++..+..++. +.+ .++|++||...+
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~---------------- 140 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL---------------- 140 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT----------------
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc----------------
Confidence 36999999998654 35667788889887777666553 322 269999998765
Q ss_pred CCCCCCCchHHhHHHHHHHHHH--HH---HHhCCceEEEEeccccCCCCCCCCc-c---HHHHHHHHHHcCCCeEEecCC
Q 019309 165 NPIGVRSCYDEGKRVAETLMFD--YH---RQHGIQIRIARIFNTYGPRMNIDDG-R---VVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 165 ~~~~~~~~Y~~~K~~~E~~~~~--~~---~~~~~~~~i~R~~~v~G~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~ 235 (343)
.+......|+.+|...+.+.+. ++ ..+|+++..+.||.+-.+....... . ........+... ++
T Consensus 141 ~~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--~p----- 213 (254)
T d2gdza1 141 MPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM--IK----- 213 (254)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH--HH-----
T ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhc--CC-----
Confidence 2333446799999999988764 23 2458999999999885432100000 0 000000000000 00
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCCccCHH
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPGEFTML 274 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~~~s~~ 274 (343)
..-+..++|+|++++.++.... +..+.+.++..+.++
T Consensus 214 --~~r~~~pedvA~~v~fL~s~~~itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 214 --YYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp --HHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEEC
T ss_pred --CCCCcCHHHHHHHHHHHHcCCCCCCCEEEECCCCeeecc
Confidence 1124667999999999998655 447788777665544
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1e-16 Score=133.02 Aligned_cols=214 Identities=16% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc--------cCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL--------LIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~d~vi 99 (343)
++|++|||||++-||+++++.|.++| ++|++++|+. +.+....+..+++...+|+.+.. +.++|++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~~----~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lV 79 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINE----SKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCH----HHHHHHHhccCCceeeeeccccccccccccccccceeEE
Confidence 68999999999999999999999999 9999999843 33444444567888888887652 34799999
Q ss_pred EecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 019309 100 HLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVR 170 (343)
Q Consensus 100 ~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~ 170 (343)
|++|....... .++....+++|+.++..+..++. +.+. ++|++||....- .+....
T Consensus 80 n~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------------~~~~~~ 144 (245)
T d2ag5a1 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------------KGVVNR 144 (245)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------------BCCTTB
T ss_pred ecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------------CCccch
Confidence 99997654322 23455778899999888877664 3444 899999865310 133344
Q ss_pred CchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 171 SCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 171 ~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
..|+.+|...+.+++.++.+ +|+++-.+.||.+-+|..... ...............-++ .-+...+
T Consensus 145 ~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------~R~~~pe 215 (245)
T d2ag5a1 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT---------GRFATAE 215 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT---------SSCEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCC---------CCCcCHH
Confidence 67999999999999998876 479999999998876531100 000111122222332221 1266789
Q ss_pred HHHHHHHHHHhcCC----CcceEecCCCc
Q 019309 246 DMVDGLIRLMEGEN----TGPVNIGNPGE 270 (343)
Q Consensus 246 D~a~~i~~~~~~~~----~~~~~~~~~~~ 270 (343)
|+|+++..++.... +..+.+.+|.+
T Consensus 216 dva~~v~fL~s~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 216 EIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred HHHHHHHHHhChhhCCCcCceEEeCCCcC
Confidence 99999999997543 44677766543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.72 E-value=9.3e-17 Score=134.24 Aligned_cols=216 Identities=19% Similarity=0.089 Sum_probs=143.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
+|.+|||||++-||.++++.|.++| ++|++.+|+.....+....+. ...++..+.+|++++. +.++
T Consensus 1 KKValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 3557999999999999999999999 999999985422221111111 1246888999999873 3479
Q ss_pred CEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcC-C-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 96 d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~-~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
|++||+||...... ..+++...+++|+.++..+..++. +.+ . ++|++||...+ .
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----------------~ 143 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH----------------V 143 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT----------------S
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc----------------c
Confidence 99999999654322 233456788999999988887653 333 2 79999998765 2
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHc--CCCeE----EecCCc
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALR--GEPLT----VQKPGT 236 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~ 236 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+. ...+...... +.... -.....
T Consensus 144 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
T d1gega_ 144 GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM--------WAEIDRQVSEAAGKPLGYGTAEFAKRI 215 (255)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH--------HHHHHHHHHHHHTCCTTHHHHHHHTTC
T ss_pred cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH--------HhhhhhhhHhhhcccchhHHHHHHhcC
Confidence 3334567999999999999888865 47999999999875542 1222111110 00000 000000
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
...-+..++|+|++++.++.... .| .+.+.+|-
T Consensus 216 pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 216 TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 11125678999999999996443 34 66666653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.72 E-value=6.7e-17 Score=135.58 Aligned_cols=221 Identities=16% Similarity=0.081 Sum_probs=148.5
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------ 91 (343)
..++|++|||||++.||.++++.|.++| ++|++++|+.....+...++.. ..++..+.+|++++.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999 9999999965443332222211 246888999999873
Q ss_pred cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----Hc-CC-eEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~-~~-r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+.++|++||+||...... ..++.+..++.|+.++..+..++. +. +. +++..||...+.......
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~------ 158 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL------ 158 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET------
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc------
Confidence 336999999998654322 223456778999988888776553 22 33 566666665432110000
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
........|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+.... ............-++.
T Consensus 159 ---~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~~~~pl~-------- 223 (260)
T d1h5qa_ 159 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH----MDKKIRDHQASNIPLN-------- 223 (260)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHHHTCTTS--------
T ss_pred ---ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc----cCHHHHHHHHhcCCCC--------
Confidence 11123356999999999999888865 47999999999887654221 1123333333332221
Q ss_pred EeeeehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
-+..++|+|++++.++.... +..+.+.+|.
T Consensus 224 -R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 224 -RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp -SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred -CCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 25668999999999986543 4467777664
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.72 E-value=2.4e-16 Score=131.37 Aligned_cols=208 Identities=16% Similarity=0.101 Sum_probs=145.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchh---hhcCCCceEEEEcccCCc-c-----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLK---KWIGHPRFELIRHDVTEP-L----------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~d~~~~-~----------- 91 (343)
..+|+||||||++-||.+++++|.++| .+|+++.|..+. .+.+. ......++.+..+|+... .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G-~~vii~~r~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVEN-PTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCC-HHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCccc-HHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999 998888876433 22222 223345788899999743 1
Q ss_pred -cCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHH----c----CCeEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V----GARILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~----~----~~r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
..++|++||+||... .++.+..+++|+.++..+..++.. . +.++|++||...+.
T Consensus 81 ~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------- 143 (254)
T d1sbya1 81 QLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------- 143 (254)
T ss_dssp HHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred HcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------------
Confidence 236999999998643 566788999999988888776642 2 12799999988762
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCcee
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALRGEPLTVQKPGTQT 238 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (343)
+......|+.+|.....+.+.++.+ +|+++..+.||.|..+..... ........+......
T Consensus 144 ---~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------------ 208 (254)
T d1sbya1 144 ---AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------------ 208 (254)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------------
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc------------
Confidence 4444567999999999888887755 489999999999976521000 000000011111111
Q ss_pred EeeeehHHHHHHHHHHHhcCCCc-ceEecCC
Q 019309 239 RSFCYVSDMVDGLIRLMEGENTG-PVNIGNP 268 (343)
Q Consensus 239 ~~~v~v~D~a~~i~~~~~~~~~~-~~~~~~~ 268 (343)
......+++|++++.+++...+| ++.+.++
T Consensus 209 ~~~~~~e~va~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 209 HPTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence 12346789999999999876655 5666655
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.72 E-value=8.2e-17 Score=135.34 Aligned_cols=217 Identities=12% Similarity=0.059 Sum_probs=140.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh----cCCCceEEEEcccCCcc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW----IGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~------------ 91 (343)
++|.+|||||++-||.+++++|.++| ++|++++|+.....+...++ ....++.++.+|++++.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999998543222222211 12246899999999873
Q ss_pred cCCCCEEEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcc-cCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEV-YGDPLIHPQPE 158 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v-~~~~~~~~~~e 158 (343)
..++|++|||||...... ..++++..++.|+.++..+.+++. +.+..+|.++|... +
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~---------- 152 (264)
T d1spxa_ 83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL---------- 152 (264)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS----------
T ss_pred hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc----------
Confidence 236999999998643211 223456778899998888777664 34446666666432 2
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-----CccHHHHHHHHHHcCCCeE
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-----DGRVVSNFIAQALRGEPLT 230 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~ 230 (343)
.+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+..... ...............-++
T Consensus 153 ------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 225 (264)
T d1spxa_ 153 ------HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA- 225 (264)
T ss_dssp ------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT-
T ss_pred ------ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC-
Confidence 12333456999999999999888875 479999999999876542110 001111112222221111
Q ss_pred EecCCceeEeeeehHHHHHHHHHHHhcC--C---CcceEecCCCc
Q 019309 231 VQKPGTQTRSFCYVSDMVDGLIRLMEGE--N---TGPVNIGNPGE 270 (343)
Q Consensus 231 ~~~~~~~~~~~v~v~D~a~~i~~~~~~~--~---~~~~~~~~~~~ 270 (343)
.-+..++|+|++++.++..+ . +..+.+.+|..
T Consensus 226 --------~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 226 --------GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp --------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred --------CCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 12567799999999998532 2 44677766543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.71 E-value=1.6e-16 Score=134.28 Aligned_cols=228 Identities=17% Similarity=0.114 Sum_probs=150.9
Q ss_pred CChhhhhhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--CCCceEEEEcccCCcc---
Q 019309 17 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--GHPRFELIRHDVTEPL--- 91 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~--- 91 (343)
|.|+...+....||++|||||++-||.++++.|.++| ++|++++|+.....+.....+ ....+.++.+|+.++.
T Consensus 6 ~~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 6 PGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIV 84 (272)
T ss_dssp CSCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHH
Confidence 3344445566789999999999999999999999999 999999875332222222221 1346888999999863
Q ss_pred ---------cCCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCC
Q 019309 92 ---------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHP 155 (343)
Q Consensus 92 ---------~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~ 155 (343)
+.++|+++|++|....... ..+....++.|+.++..+.+++... +.++++++|.....
T Consensus 85 ~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~------ 158 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA------ 158 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC------
T ss_pred HHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc------
Confidence 2369999999986643322 2344567889999999998888643 22777777764321
Q ss_pred CCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCC--------CCCCccHHHHHHH-HH
Q 019309 156 QPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRM--------NIDDGRVVSNFIA-QA 223 (343)
Q Consensus 156 ~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~--------~~~~~~~~~~~~~-~~ 223 (343)
.+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+.. ............. ..
T Consensus 159 ---------~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (272)
T d1g0oa_ 159 ---------KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAA 229 (272)
T ss_dssp ---------SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHH
T ss_pred ---------ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHH
Confidence 13334456999999999999888876 489999999998865320 0000000011111 11
Q ss_pred HcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCC
Q 019309 224 LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPG 269 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~ 269 (343)
....++ .-+...+|+|.+++.++.... +| ...+.+|.
T Consensus 230 ~~~~Pl---------gR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 230 VQWSPL---------RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp HHSCTT---------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HccCCC---------CCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 111111 126778999999999996543 44 56666653
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.71 E-value=2.2e-16 Score=130.55 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=136.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCe-------EEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc----------
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNE-------VIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~-------V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~---------- 91 (343)
+.||||||++-||+++++.|.++| ++ |++++|+.....+...... ....+.++.+|++|+.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G-~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhC-ccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 348999999999999999999999 65 7888875322211111111 1246788999999873
Q ss_pred --cCCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+.++|++||+||...... ..++....+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----------- 149 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----------- 149 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC-----------
Confidence 336999999998654322 234556788999999888777663 4455 999999987652
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+...... ...
T Consensus 150 -----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~----------------------~~~ 202 (240)
T d2bd0a1 150 -----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD----------------------DEM 202 (240)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC----------------------STT
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcC----------------------Hhh
Confidence 3334567999999999998888766 4799999999988766421100 001
Q ss_pred eEeeeehHHHHHHHHHHHhcCC
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
...+..++|+|++++.++..+.
T Consensus 203 ~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 203 QALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp GGGSBCHHHHHHHHHHHHTSCT
T ss_pred HhcCCCHHHHHHHHHHHHcCCc
Confidence 1124567999999999998765
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.1e-16 Score=132.09 Aligned_cols=204 Identities=15% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCcc------------c
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------~ 92 (343)
++|.+|||||++-||.++++.|.++| ++|++.+|+.....+...++. ....+.++.+|+.+++ +
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999 999999985322222111111 2246888999999873 3
Q ss_pred CCCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~---~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
.++|++||+||...... ..++....++.|+.+...+..++ ++.+ .++|++||.+.+..
T Consensus 88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~----------- 156 (257)
T d1xg5a_ 88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV----------- 156 (257)
T ss_dssp CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-----------
T ss_pred CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC-----------
Confidence 36999999998654322 23455677889988887776655 3433 38999999876421
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.|......|+.+|...+.+.+.++.+ +++++..+.|+.+-.+.......... ...... .
T Consensus 157 ---~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~----~~~~~~--~------- 220 (257)
T d1xg5a_ 157 ---LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDP----EKAAAT--Y------- 220 (257)
T ss_dssp ---CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCH----HHHHHH--H-------
T ss_pred ---CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhH----HHHHhc--C-------
Confidence 23333456999999999999888754 46889999998665432100000011 111110 1
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
....+..++|+|++++.++..+.
T Consensus 221 ~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 221 EQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp C---CBCHHHHHHHHHHHHHSCT
T ss_pred CCCCCcCHHHHHHHHHHHhCChh
Confidence 11236788999999999998765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.69 E-value=1.6e-16 Score=134.22 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~------------ 91 (343)
.+|+++||||++-||.++++.|.++| ++|++.+|+.....+....+. ...++..+.+|++++.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 999999985322111111111 1246889999999873
Q ss_pred cCCCCEEEEecCCCCcc--c----cccChHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPI--F----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~--~----~~~~~~~~~~~nv~~~~~l~~~a~----~~~~-r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+..+|++||+||..... . ..+++...+++|+.++..+..++. +.+. +++++||.....
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~----------- 150 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ----------- 150 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS-----------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc-----------
Confidence 23699999999854221 1 123456778999999888877764 3444 788877765431
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC-CccHHHHHHHHHHc--CCCeEEecC
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID-DGRVVSNFIAQALR--GEPLTVQKP 234 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~ 234 (343)
+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+..... .......-...... ...+++
T Consensus 151 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl--- 222 (274)
T d1xhla_ 151 -----AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV--- 222 (274)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT---
T ss_pred -----cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC---
Confidence 2233457999999999999888765 489999999999876531110 01111111112211 111221
Q ss_pred CceeEeeeehHHHHHHHHHHHhc--CC---CcceEecCCCc
Q 019309 235 GTQTRSFCYVSDMVDGLIRLMEG--EN---TGPVNIGNPGE 270 (343)
Q Consensus 235 ~~~~~~~v~v~D~a~~i~~~~~~--~~---~~~~~~~~~~~ 270 (343)
.-+..++|+|++++.++.. .. +..+.+.+|..
T Consensus 223 ----gR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 223 ----GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp ----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred ----CCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 1256789999999999852 22 44777777654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.69 E-value=1.2e-16 Score=134.99 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=142.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 94 (343)
..+|++|||||++-||+++++.|.++| ++|++++|+.+.-.+...+ + ..++..+.+|+.++. +..
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~-~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSAERLAELETD-H-GDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-H-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-c-CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999999999 9999999853221111111 1 246889999999863 236
Q ss_pred CCEEEEecCCCCcccc-----c----cChHHHHHHHHHHHHHHHHHH----HHcCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFY-----K----YNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~-----~----~~~~~~~~~nv~~~~~l~~~a----~~~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
+|++||+||....... . .+++..+++|+.++..+.+++ ++.+.++|++||...+-
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~------------ 147 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFY------------ 147 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhcc------------
Confidence 9999999986432111 1 125677889998888877766 44556888888876542
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh--CCceEEEEeccccCCCCCCCCccH-----H-HHHHHHHHcCCCeEEec
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIQIRIARIFNTYGPRMNIDDGRV-----V-SNFIAQALRGEPLTVQK 233 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~--~~~~~i~R~~~v~G~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 233 (343)
+......|+.+|...+.+.+.++.+. ++++-.+.||.|-.+...+..... . ..+.......-++.
T Consensus 148 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg--- 220 (276)
T d1bdba_ 148 ----PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIG--- 220 (276)
T ss_dssp ----TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTS---
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCC---
Confidence 22334579999999999998888765 389999999988765322111000 0 11122222221111
Q ss_pred CCceeEeeeehHHHHHHHHHHHh-c-CC---CcceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLME-G-EN---TGPVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~-~-~~---~~~~~~~~~ 268 (343)
-+..++|+|.+++.++. . .. +..+++.+|
T Consensus 221 ------R~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 221 ------RMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp ------SCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred ------CCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 25567999999998874 2 22 446677665
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.68 E-value=1.1e-15 Score=128.03 Aligned_cols=215 Identities=16% Similarity=0.113 Sum_probs=144.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------cC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------LI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~~ 93 (343)
.||++|||||++-||.++++.|.++| ++|++..|......+.....+. ..++..+.+|+.++. ..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999 9998876643332222222221 246888999999863 23
Q ss_pred CCCEEEEecCCCCccc----cccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCc-ccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSE-VYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~-v~~~~~~~~~~e~~~~~~~ 165 (343)
++|++||+||...... ..++.+..++.|+.+...+++++...= .+++.++|.. .+.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~---------------- 147 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT---------------- 147 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC----------------
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc----------------
Confidence 6999999999664322 223445778899999988888886431 2566665543 221
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCC---------CCCCccHHHHHHHHHHcCCCeEEec
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRM---------NIDDGRVVSNFIAQALRGEPLTVQK 233 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (343)
+......|+.+|...+.+.+.++.+ .|+++-.+.||++-.+.. ..........+...+....++.
T Consensus 148 ~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--- 224 (259)
T d1ja9a_ 148 GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK--- 224 (259)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS---
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC---
Confidence 2223457999999999999888875 479999999998864310 0001111223333333333221
Q ss_pred CCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCC
Q 019309 234 PGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 234 ~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
-+...+|+|++++.++.... .| .+.+.+|
T Consensus 225 ------R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 225 ------RIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp ------SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------CCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 25678999999999997644 44 5666554
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1e-15 Score=130.63 Aligned_cols=204 Identities=14% Similarity=0.016 Sum_probs=136.9
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc-----cchhh---hcCCCceEEEEcccCCc-----
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK-----DNLKK---WIGHPRFELIRHDVTEP----- 90 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~~~~---~~~~~~~~~~~~d~~~~----- 90 (343)
++...+|++|||||++-||+++++.|.++| ++|++.+|...... ..+.. .+. .......+|+.+.
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIR-RRGGKAVANYDSVEAGEK 79 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHH-HTTCEEEEECCCGGGHHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHHh-hcccccccccchHHHHHH
Confidence 344579999999999999999999999999 99999987543211 11111 111 1223344555543
Q ss_pred -------ccCCCCEEEEecCCCCcccc----ccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCC
Q 019309 91 -------LLIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIH 154 (343)
Q Consensus 91 -------~~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~ 154 (343)
.+.++|++|||||....... .++....+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~----- 154 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY----- 154 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC-----
Confidence 23479999999997654322 2345678899999999888775 44555 999999987642
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.|+.+-.+... .+..
T Consensus 155 -----------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~-----~~~~------------- 205 (302)
T d1gz6a_ 155 -----------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET-----VMPE------------- 205 (302)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG-----GSCH-------------
T ss_pred -----------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh-----cCcH-------------
Confidence 2233467999999999999988876 4799999999876433211 0000
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhcCC---CcceEecCC
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNP 268 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~ 268 (343)
.....+.++|+|.++++++.... +..+.+.+|
T Consensus 206 -----~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdGG 240 (302)
T d1gz6a_ 206 -----DLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 240 (302)
T ss_dssp -----HHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred -----hhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCCC
Confidence 01123456899999999985432 334444443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.67 E-value=5.9e-16 Score=130.55 Aligned_cols=220 Identities=14% Similarity=0.063 Sum_probs=143.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcc------------
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~------------ 91 (343)
++|++|||||++-||.++++.|.++| ++|++++|+.+.-.+....+. ...++..+.+|++++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 999999985432222222221 1236889999999873
Q ss_pred cCCCCEEEEecCCCCcccc----cc----ChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeC-CcccCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFY----KY----NPVKTIKTNVIGTLNMLGLAK----RVGARILLTST-SEVYGDPLIHPQPE 158 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~----~~----~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS-~~v~~~~~~~~~~e 158 (343)
+.++|++||+||....... .+ ++...+++|+.++..+.+++. +.+..+|.++| .+..
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~---------- 152 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP---------- 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------
T ss_pred hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc----------
Confidence 2369999999986543221 11 255677899998888887764 33445555555 4332
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCC--CccHHHHHHHHHHc-CCCeEEe
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNID--DGRVVSNFIAQALR-GEPLTVQ 232 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 232 (343)
.+......|+.+|...+.+.+.++.+ +|+++..+.||.|-.+..... .............. ...+++
T Consensus 153 ------~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 225 (272)
T d1xkqa_ 153 ------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI- 225 (272)
T ss_dssp ------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT-
T ss_pred ------cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC-
Confidence 12333467999999999999888865 479999999998866532110 01111111111111 122221
Q ss_pred cCCceeEeeeehHHHHHHHHHHHhc---C-C-CcceEecCCCcc
Q 019309 233 KPGTQTRSFCYVSDMVDGLIRLMEG---E-N-TGPVNIGNPGEF 271 (343)
Q Consensus 233 ~~~~~~~~~v~v~D~a~~i~~~~~~---~-~-~~~~~~~~~~~~ 271 (343)
.-+..++|+|++++.++.. . - +..+.+.+|..+
T Consensus 226 ------gR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 226 ------GAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp ------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred ------CCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 1266789999999999852 1 2 446777776544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.1e-16 Score=130.72 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=138.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------cCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------LIE 94 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~~~ 94 (343)
.||.++||||++-||.+++++|.++| ++|++++|+.+.-.+...+.. ...++..+.+|++|+. ..+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999 999999985432222111111 1346889999999873 336
Q ss_pred CCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 95 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 95 ~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
+|++|||||........ +.....+++|+.++..+..++ ++.+. ++|++||...+.
T Consensus 85 idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~---------------- 148 (244)
T d1yb1a_ 85 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV---------------- 148 (244)
T ss_dssp CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC----------------
T ss_pred CceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC----------------
Confidence 99999999976533322 234577899999888877765 45555 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH------hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ------HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~------~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|.+.+.+.+.++.+ .|+++..+.||+|-.+.... .. ....
T Consensus 149 ~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~----------------~~-------~~~~ 205 (244)
T d1yb1a_ 149 SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN----------------PS-------TSLG 205 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC----------------TH-------HHHC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhC----------------cC-------cccc
Confidence 3333467999999999999888865 37999999999886543110 00 0111
Q ss_pred eeeehHHHHHHHHHHHhcCCC
Q 019309 240 SFCYVSDMVDGLIRLMEGENT 260 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~~ 260 (343)
.....+|+|+.+...+..+..
T Consensus 206 ~~~~pe~va~~i~~~~~~~~~ 226 (244)
T d1yb1a_ 206 PTLEPEEVVNRLMHGILTEQK 226 (244)
T ss_dssp CCCCHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHhcCCc
Confidence 245678999999988876543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.67 E-value=2.1e-15 Score=126.46 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=137.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCCCc--cchhhhc--CCCceEEEEcccCCcc----------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTGSK--DNLKKWI--GHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~--~~~~~~~--~~~~~~~~~~d~~~~~---------- 91 (343)
..+.+||||||+|.||.++++.|.++| + .|+++.|+..... +.+...+ ....+.++.+|++|..
T Consensus 7 ~p~gt~lVTGgs~GIG~a~a~~la~~G-a~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~ 85 (259)
T d2fr1a1 7 KPTGTVLVTGGTGGVGGQIARWLARRG-APHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 85 (259)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHT-CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCcCEEEEECCCcHHHHHHHHHHHHCC-CCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccc
Confidence 455799999999999999999999999 6 5787887532211 1111111 1246889999999862
Q ss_pred -cCCCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 92 -LIEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 92 -~~~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
...+|.|||++|........+ +....++.|+.++..+..++...+. +||++||....-
T Consensus 86 ~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~---------------- 149 (259)
T d2fr1a1 86 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF---------------- 149 (259)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------
T ss_pred ccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------------
Confidence 125999999999765433222 2345678999999999998888776 899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHHhCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehH
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVS 245 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 245 (343)
+......|+.+|...+.+.+.+..+ |+++..+.||.+.+++.. ...+...+.. .+ ...+..+
T Consensus 150 g~~~~~~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~~-------~~~~~~~~~~-------~G---~~~~~~~ 211 (259)
T d2fr1a1 150 GAPGLGGYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGMA-------EGPVADRFRR-------HG---VIEMPPE 211 (259)
T ss_dssp CCTTCTTTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC-------------------CTT-------TT---EECBCHH
T ss_pred CCcccHHHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCccc-------cchHHHHHHh-------cC---CCCCCHH
Confidence 2333466999999999988877654 999999999988776521 1111111110 11 2356789
Q ss_pred HHHHHHHHHHhcCCCc
Q 019309 246 DMVDGLIRLMEGENTG 261 (343)
Q Consensus 246 D~a~~i~~~~~~~~~~ 261 (343)
++++++..++......
T Consensus 212 ~~~~~l~~~l~~~~~~ 227 (259)
T d2fr1a1 212 TACRALQNALDRAEVC 227 (259)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhCCCce
Confidence 9999999999876643
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.4e-15 Score=129.03 Aligned_cols=216 Identities=16% Similarity=0.142 Sum_probs=140.7
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCC--Cccchh---hhc--CCCceEEEEcccCCcc----------
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTG--SKDNLK---KWI--GHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~---~~~--~~~~~~~~~~d~~~~~---------- 91 (343)
+|.||||||++-||.++++.|.++| .+|+.+.+.... ..+.+. ..+ ...++..+.+|++|+.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~G-a~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 80 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCC-CCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc
Confidence 4668999999999999999999999 765554432111 111111 111 2347899999999872
Q ss_pred cCCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
...+|+++|++|........ ++....+++|+.++..+..++ ++.+. ++|++||.....
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~------------- 147 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------- 147 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS-------------
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC-------------
Confidence 13699999999866543322 344567889999888877765 45565 999999987652
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCc-----------cHHHHHHHHHHcCCC
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDG-----------RVVSNFIAQALRGEP 228 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~-----------~~~~~~~~~~~~~~~ 228 (343)
+......|+.+|...+.+.+.++.+ +|+++..+.||.|-.+....... .....+.......+.
T Consensus 148 ---~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (285)
T d1jtva_ 148 ---GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQ 224 (285)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhh
Confidence 3334467999999999999888876 48999999999887653211000 001111111111111
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCCCcceEecCC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNP 268 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~~~~~~~~~~ 268 (343)
+. ......++|+|++++.+++.+....+++.+.
T Consensus 225 ~~-------~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~ 257 (285)
T d1jtva_ 225 VF-------REAAQNPEEVAEVFLTALRAPKPTLRYFTTE 257 (285)
T ss_dssp HH-------HHHCBCHHHHHHHHHHHHHCSSCCSEEESCS
T ss_pred hh-------cccCCCHHHHHHHHHHHHhCCCCCeEEecHH
Confidence 11 1124567999999999999877666666654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.2e-15 Score=124.30 Aligned_cols=185 Identities=16% Similarity=0.071 Sum_probs=128.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc--------------ccC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP--------------LLI 93 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------~~~ 93 (343)
.+|+||||||+|.||.++++.|.++| ++|.++++...... ........+..+. ...
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGDQ 70 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCccccc---------cccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence 47999999999999999999999999 99999987543211 1122223333221 112
Q ss_pred CCCEEEEecCCCCcc-c----cccChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCC
Q 019309 94 EVDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVN 165 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~-~----~~~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~ 165 (343)
++|++||+||..... . ..++.+..++.|+.++..+..++.+. +.++|++||...+.
T Consensus 71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------------- 134 (236)
T d1dhra_ 71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------------- 134 (236)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------------
Confidence 589999999853321 1 12334567899999998888887643 23899999987652
Q ss_pred CCCCCCchHHhHHHHHHHHHHHHHH-----hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEe
Q 019309 166 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRS 240 (343)
Q Consensus 166 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (343)
+......|+.+|...+.+.+.++.+ .|+++..+.||.+..+. .+...... ..-.
T Consensus 135 ~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~------------~~~~~~~~---------~~~~ 193 (236)
T d1dhra_ 135 GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFSS 193 (236)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGGG
T ss_pred CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc------------chhhCccc---------hhhc
Confidence 3334467999999999999999865 36999999998886542 11111111 1123
Q ss_pred eeehHHHHHHHHHHHhcCC
Q 019309 241 FCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 241 ~v~v~D~a~~i~~~~~~~~ 259 (343)
++..+++|+.+..++....
T Consensus 194 ~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 6778999999999997543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.3e-15 Score=122.28 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=136.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEV 95 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 95 (343)
+||.+|||||++.||.+++++|.++| ++|++++|+.....+....+ . ........|+.+.. ....
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKL-G-NNCVFAPADVTSEKDVQTALALAKGKFGRV 80 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHHHHHHH-C-TTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHh-C-CCcccccccccccccccccccccccccccc
Confidence 78999999999999999999999999 99999999654433333322 2 46677777777642 2358
Q ss_pred CEEEEecCCCCccc----------cccChHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEeCCcccCCCCCC
Q 019309 96 DQIYHLACPASPIF----------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLIH 154 (343)
Q Consensus 96 d~vi~~a~~~~~~~----------~~~~~~~~~~~nv~~~~~l~~~a~~~----------~~-r~i~~SS~~v~~~~~~~ 154 (343)
|.++++++...... ..++....++.|+.++..+..++... +. ++|++||...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~----- 155 (248)
T d2o23a1 81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE----- 155 (248)
T ss_dssp CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-----
T ss_pred cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc-----
Confidence 88888876443211 11244567899999999998887542 23 799999998752
Q ss_pred CCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 019309 155 PQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTV 231 (343)
Q Consensus 155 ~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (343)
+......|+.+|...+.+.+.++.+. |+++..+.||.+..+... .+............ ++
T Consensus 156 -----------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~--pl 218 (248)
T d2o23a1 156 -----------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT----SLPEKVCNFLASQV--PF 218 (248)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTC--SS
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh----cCCHHHHHHHHhcC--CC
Confidence 33344679999999999999988764 799999999988765421 11111222222211 11
Q ss_pred ecCCceeEeeeehHHHHHHHHHHHhc
Q 019309 232 QKPGTQTRSFCYVSDMVDGLIRLMEG 257 (343)
Q Consensus 232 ~~~~~~~~~~v~v~D~a~~i~~~~~~ 257 (343)
. .-+..++|+|++++.+++.
T Consensus 219 ~------~R~g~peevA~~v~fL~s~ 238 (248)
T d2o23a1 219 P------SRLGDPAEYAHLVQAIIEN 238 (248)
T ss_dssp S------CSCBCHHHHHHHHHHHHHC
T ss_pred C------CCCcCHHHHHHHHHHHHhC
Confidence 0 1256789999999999874
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=9.5e-15 Score=122.36 Aligned_cols=215 Identities=14% Similarity=0.039 Sum_probs=142.3
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCc------------c
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEP------------L 91 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~------------~ 91 (343)
..+|++|||||+| -||.++++.|+++| ++|++.+|+... .+...+.. ..........|+.+. .
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKL-KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTT-HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCHHH-HHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 4789999999999 79999999999999 999999986422 22222211 233566677777664 2
Q ss_pred cCCCCEEEEecCCCCcccccc---------ChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeCCcccCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFYKY---------NPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLIHPQPET 159 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~~---------~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~SS~~v~~~~~~~~~~e~ 159 (343)
....|+++|+++......... ........|+.+...+..++...- ..+|++||....
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~----------- 149 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------- 149 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------
Confidence 336899999998654333211 123345677777777777765432 258888987653
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 160 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 160 ~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+......|+.+|...+.+.+.++.+. |+++-.++||.|..+..... .............-++.
T Consensus 150 -----~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~--~~~~~~~~~~~~~~pl~------ 216 (258)
T d1qsga_ 150 -----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--KDFRKMLAHCEAVTPIR------ 216 (258)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--TTHHHHHHHHHHHSTTS------
T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc--chhhhHHHHHHhCCCCC------
Confidence 233334679999999999999888765 69999999999987753221 11122222222221111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
-+..++|+|.++..++.... .| .+.+.+|.+
T Consensus 217 ---R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 217 ---RTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---SCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ---CCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 25678999999999996533 44 667766644
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.63 E-value=2.5e-15 Score=128.36 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=141.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC--CCceEEEEcccCCcc------------c
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG--HPRFELIRHDVTEPL------------L 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~------------~ 92 (343)
..||++|||||+|.||.+++++|.++| ++|++++|+.....+...++.. ...+.++.+|+.+.. .
T Consensus 23 l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 23 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 478999999999999999999999999 9999999854322222222211 246788999999873 2
Q ss_pred CCCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHH----Hc-CC-eEEEEeCCcccCCCCCCCCCCCCCC
Q 019309 93 IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLIHPQPETYWG 162 (343)
Q Consensus 93 ~~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~----~~-~~-r~i~~SS~~v~~~~~~~~~~e~~~~ 162 (343)
.++|++||+||......... +....+..|......+...+. .. +. .++.+||.....
T Consensus 102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------- 168 (294)
T d1w6ua_ 102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------- 168 (294)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-------------
T ss_pred cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-------------
Confidence 36999999998664332222 233455667666666544432 22 23 577777765432
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeE
Q 019309 163 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTR 239 (343)
Q Consensus 163 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (343)
+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+...... .............-++.
T Consensus 169 ---~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~~pl~--------- 235 (294)
T d1w6ua_ 169 ---GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRL-DPTGTFEKEMIGRIPCG--------- 235 (294)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------C-CTTSHHHHHHHTTCTTS---------
T ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhcc-CCcHHHHHHHhhcCCCC---------
Confidence 2223456999999999999988866 4799999999999776421110 00111223333322211
Q ss_pred eeeehHHHHHHHHHHHhcCC----CcceEecCCCcc
Q 019309 240 SFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEF 271 (343)
Q Consensus 240 ~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~ 271 (343)
-+..++|+|+++..++.... +..+.+.+|..+
T Consensus 236 R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~l 271 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEV 271 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHH
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChhh
Confidence 25678999999999996533 447777776443
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=6.6e-15 Score=122.59 Aligned_cols=208 Identities=14% Similarity=0.063 Sum_probs=139.3
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------cCCCCEE
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------LIEVDQI 98 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~d~v 98 (343)
++|||||++.||..+++.|.++| ++|++.+|+.... +.+... ...+..+|+.+.. +.++|++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~~~~~-~~~~~~----~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL 75 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK-DELEAF----AETYPQLKPMSEQEPAELIEAVTSAYGQVDVL 75 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH-HHHHHH----HHHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHhh----hCcEEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 58999999999999999999999 9999998854332 222221 1122345665542 2369999
Q ss_pred EEecCCCCc-cc----cccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCC
Q 019309 99 YHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIG 168 (343)
Q Consensus 99 i~~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~ 168 (343)
|||||.... .. ..++....++.|+.++..+.+++ ++.+. ++|++||...+. +..
T Consensus 76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~ 139 (252)
T d1zmta1 76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWK 139 (252)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCT
T ss_pred EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------ccc
Confidence 999985432 11 22345567789988888777765 44454 999999987653 233
Q ss_pred CCCchHHhHHHHHHHHHHHHHHh---CCceEEEEeccccCCCCCCCCcc----HHHHHHHHHHcCCCeEEecCCceeEee
Q 019309 169 VRSCYDEGKRVAETLMFDYHRQH---GIQIRIARIFNTYGPRMNIDDGR----VVSNFIAQALRGEPLTVQKPGTQTRSF 241 (343)
Q Consensus 169 ~~~~Y~~~K~~~E~~~~~~~~~~---~~~~~i~R~~~v~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
....|+.+|...+.+.+.++.+. |+++-.+.||.+-.+........ ........+.+.-++. -+
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~---------R~ 210 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ---------RL 210 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS---------SC
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC---------CC
Confidence 34679999999999998888664 79999999999877643211100 0122333333322221 15
Q ss_pred eehHHHHHHHHHHHhcCC----CcceEecCCC
Q 019309 242 CYVSDMVDGLIRLMEGEN----TGPVNIGNPG 269 (343)
Q Consensus 242 v~v~D~a~~i~~~~~~~~----~~~~~~~~~~ 269 (343)
..++|+|++++.++.... +..+.+.+|-
T Consensus 211 g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 211 GTQKELGELVAFLASGSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp BCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCeEEECCCc
Confidence 678999999999997654 4467777664
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.63 E-value=3.1e-14 Score=118.28 Aligned_cols=163 Identities=16% Similarity=0.085 Sum_probs=116.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHh---cCCCeEEEEecCCCCCccchhhh-cCCCceEEEEcccCCccc-------------
Q 019309 30 MRILVTGGAGFIGSHLVDKLME---NEKNEVIVADNYFTGSKDNLKKW-IGHPRFELIRHDVTEPLL------------- 92 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~------------- 92 (343)
|+||||||++-||.++++.|++ +| ++|++..|+..... .+.+. ....++.++.+|++|+..
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPP-QHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHH-HHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 6899999999999999999985 67 89999999754432 22222 124589999999998632
Q ss_pred -CCCCEEEEecCCCCcc--cccc---ChHHHHHHHHHHHHHHHHHHHH----c-----------C-CeEEEEeCCcccCC
Q 019309 93 -IEVDQIYHLACPASPI--FYKY---NPVKTIKTNVIGTLNMLGLAKR----V-----------G-ARILLTSTSEVYGD 150 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~--~~~~---~~~~~~~~nv~~~~~l~~~a~~----~-----------~-~r~i~~SS~~v~~~ 150 (343)
.++|++||+||..... .... +....+++|+.++..+..++.. . + .++|.+||....-.
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 2599999999865432 1122 2446788999998888776532 1 2 37999999753210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPR 207 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~ 207 (343)
. .+......|+.+|.....+.+.++.+ .|+++..+.||+|-.+.
T Consensus 161 --~-----------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 161 --G-----------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp --T-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred --C-----------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence 0 12233457999999999988887755 47999999999886653
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.62 E-value=1.1e-14 Score=121.30 Aligned_cols=207 Identities=13% Similarity=0.022 Sum_probs=134.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL------------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------- 92 (343)
|..|+||||||++-||.+++++|+++|. +.|++..|+.... +.+.+. ...++.++.+|+.+...
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~-~~l~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 78 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVG 78 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH-HHHHHh-hCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 4569999999999999999999999993 3677778754322 223222 23579999999998621
Q ss_pred -CCCCEEEEecCCCCccc--c---ccChHHHHHHHHHHHHHHHHHHHH----c------------CCeEEEEeCCcccCC
Q 019309 93 -IEVDQIYHLACPASPIF--Y---KYNPVKTIKTNVIGTLNMLGLAKR----V------------GARILLTSTSEVYGD 150 (343)
Q Consensus 93 -~~~d~vi~~a~~~~~~~--~---~~~~~~~~~~nv~~~~~l~~~a~~----~------------~~r~i~~SS~~v~~~ 150 (343)
.++|++|||||...... . .++....+++|+.++..+..++.. . ..+++.+|+...+-.
T Consensus 79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~ 158 (250)
T d1yo6a1 79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT 158 (250)
T ss_dssp GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence 14999999999654321 1 123456789999999888777632 1 125777777654321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGE 227 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 227 (343)
.... . .+..+...|+.+|.....+.+.++.+ .|+++..+.||+|-.+.. ++
T Consensus 159 ~~~~---~------~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~-----------------~~ 212 (250)
T d1yo6a1 159 DNTS---G------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG-----------------GK 212 (250)
T ss_dssp TCCS---T------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------
T ss_pred CCcc---c------ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC-----------------CC
Confidence 1100 0 12233346999999999999888865 479999999987754320 00
Q ss_pred CeEEecCCceeEeeeehHHHHHHHHHHHhcCC---CcceEecCCCccC
Q 019309 228 PLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TGPVNIGNPGEFT 272 (343)
Q Consensus 228 ~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~~~~~~~~~~~s 272 (343)
...+.+++.++.++..+.... .|.|+...+.++.
T Consensus 213 -----------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p~~ 249 (250)
T d1yo6a1 213 -----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred -----------CCCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCeeCC
Confidence 012456788888888887544 6777665555554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.4e-15 Score=122.93 Aligned_cols=202 Identities=11% Similarity=0.067 Sum_probs=137.6
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--cCCCceEEEEcccCCcc----------
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--IGHPRFELIRHDVTEPL---------- 91 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~---------- 91 (343)
+-+..||++||||||+.||.++++.|.++| ++|++++|+.+.-.+...+. .....+..+.+|..+..
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 87 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 87 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH
Confidence 334689999999999999999999999999 99999998543222222221 12346777888887652
Q ss_pred --cCCCCEEEEecCCCCccccc----cChHHHHHHHHHHHHHHHHHHH----HcCCeEEEEeCCcccCCCCCCCCCCCCC
Q 019309 92 --LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLIHPQPETYW 161 (343)
Q Consensus 92 --~~~~d~vi~~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~a~----~~~~r~i~~SS~~v~~~~~~~~~~e~~~ 161 (343)
....|+++++||........ ++....+++|+.++..+...+. +.+.++|++||...+
T Consensus 88 ~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~------------- 154 (269)
T d1xu9a_ 88 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK------------- 154 (269)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT-------------
T ss_pred HHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc-------------
Confidence 23699999999865432222 2334567889888887776663 445589999998764
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 019309 162 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGT 236 (343)
Q Consensus 162 ~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
.+......|+.+|...+.+.+.++.+. ++++..+.||.|-.+ +......+.
T Consensus 155 ---~~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~------------~~~~~~~~~--------- 210 (269)
T d1xu9a_ 155 ---VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE------------TAMKAVSGI--------- 210 (269)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH------------HHHHHSCGG---------
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc------------HHHHhccCC---------
Confidence 233445689999999999888887653 477888999877542 222221111
Q ss_pred eeEeeeehHHHHHHHHHHHhcCCCcce
Q 019309 237 QTRSFCYVSDMVDGLIRLMEGENTGPV 263 (343)
Q Consensus 237 ~~~~~v~v~D~a~~i~~~~~~~~~~~~ 263 (343)
........+++|+.++.........+|
T Consensus 211 ~~~~~~~~e~~a~~i~~~~~~~~~~i~ 237 (269)
T d1xu9a_ 211 VHMQAAPKEECALEIIKGGALRQEEVY 237 (269)
T ss_dssp GGGGCBCHHHHHHHHHHHHHTTCSEEE
T ss_pred ccccCCCHHHHHHHHHHHhhcCCCEEE
Confidence 112345678899988887776554443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=6.4e-15 Score=123.37 Aligned_cols=207 Identities=9% Similarity=0.010 Sum_probs=137.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHh---cCCCeEEEEecCCCCCccchh---hhcCCCceEEEEcccCCccc--------
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVADNYFTGSKDNLK---KWIGHPRFELIRHDVTEPLL-------- 92 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~-------- 92 (343)
+.+|.++||||++.||.+++++|.+ +| ++|++++|+...-.+... ......++.++.+|+.++..
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 3688999999999999999999986 78 999999985422111111 11123468889999998621
Q ss_pred --------CCCCEEEEecCCCCccc----cc---cChHHHHHHHHHHHHHHHHHHHH----cC--C-eEEEEeCCcccCC
Q 019309 93 --------IEVDQIYHLACPASPIF----YK---YNPVKTIKTNVIGTLNMLGLAKR----VG--A-RILLTSTSEVYGD 150 (343)
Q Consensus 93 --------~~~d~vi~~a~~~~~~~----~~---~~~~~~~~~nv~~~~~l~~~a~~----~~--~-r~i~~SS~~v~~~ 150 (343)
...|+++|+||...... .. ++....++.|+.++..+..++.. .+ . ++|++||...+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~-- 160 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-- 160 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc--
Confidence 24789999998643211 12 23456789999999999888853 22 2 79999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH-hCCceEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC
Q 019309 151 PLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-HGIQIRIARIFNTYGPRMNIDD-GRVVSNFIAQALRGEP 228 (343)
Q Consensus 151 ~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-~~~~~~i~R~~~v~G~~~~~~~-~~~~~~~~~~~~~~~~ 228 (343)
.+......|+.+|...+.+.+.++.+ .|+++..+.||.+-.+...... ..........+....+
T Consensus 161 --------------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
T d1oaaa_ 161 --------------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKS 226 (259)
T ss_dssp --------------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCC
Confidence 23444578999999999999988866 3789999999888664210000 0000001111110000
Q ss_pred eEEecCCceeEeeeehHHHHHHHHHHHhcCC
Q 019309 229 LTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN 259 (343)
Q Consensus 229 ~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~ 259 (343)
.-.+..++|+|++++.+++...
T Consensus 227 ---------~~r~~~p~evA~~i~~ll~~~s 248 (259)
T d1oaaa_ 227 ---------DGALVDCGTSAQKLLGLLQKDT 248 (259)
T ss_dssp ---------TTCSBCHHHHHHHHHHHHHHCC
T ss_pred ---------CCCCCCHHHHHHHHHHHhhhcc
Confidence 0124678999999999997643
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.59 E-value=1.3e-14 Score=119.64 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=124.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc--------------ccCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP--------------LLIEV 95 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------~~~~~ 95 (343)
.|||||||+|-||.++++.|.++| ++|++++|....... ......+|..+. ...++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 72 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQV 72 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCchhccc---------ccceeccccCchhHHHHHHHHHHHHhcCCCe
Confidence 579999999999999999999999 999999986433211 122233333322 12358
Q ss_pred CEEEEecCCCCcc-ccc----cChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCC
Q 019309 96 DQIYHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLIHPQPETYWGNVNPI 167 (343)
Q Consensus 96 d~vi~~a~~~~~~-~~~----~~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~ 167 (343)
|++|||||..... ... +..+..++.|+.++..+..++... +.++|++||...+. +.
T Consensus 73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------------~~ 136 (235)
T d1ooea_ 73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------PT 136 (235)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------CC
T ss_pred eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC----------------Cc
Confidence 9999999854321 111 233456789999888888877653 23899999987653 33
Q ss_pred CCCCchHHhHHHHHHHHHHHHHHh-----CCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeee
Q 019309 168 GVRSCYDEGKRVAETLMFDYHRQH-----GIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242 (343)
Q Consensus 168 ~~~~~Y~~~K~~~E~~~~~~~~~~-----~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 242 (343)
.....|+.+|...+.+.+.++.+. ++++..+.|+.+-.+ +.+...... ....++
T Consensus 137 ~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~------------~~~~~~~~~---------~~~~~~ 195 (235)
T d1ooea_ 137 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------------MNRKWMPNA---------DHSSWT 195 (235)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH------------HHHHHSTTC---------CGGGCB
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc------------chhhhCcCC---------ccccCC
Confidence 345789999999999999988663 567777888876432 222222111 122467
Q ss_pred ehHHHHHHHHHHHhc
Q 019309 243 YVSDMVDGLIRLMEG 257 (343)
Q Consensus 243 ~v~D~a~~i~~~~~~ 257 (343)
..+|+++.++.++..
T Consensus 196 ~~~~va~~~~~~l~~ 210 (235)
T d1ooea_ 196 PLSFISEHLLKWTTE 210 (235)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 889999998866654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.5e-14 Score=117.45 Aligned_cols=177 Identities=18% Similarity=0.061 Sum_probs=119.0
Q ss_pred CCEE-EEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCccc------------C
Q 019309 29 NMRI-LVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPLL------------I 93 (343)
Q Consensus 29 ~~~i-lItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 93 (343)
||+| |||||++-||.++++.|.++ | ++|++.+|+.+...+....+. ...++.++.+|+.+... .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6777 89999999999999999986 7 899999986433222222221 23578899999998732 3
Q ss_pred CCCEEEEecCCCCcccccc----ChHHHHHHHHHHHHHHHHHHHHc---CCeEEEEeCCcccCCC-CCCC----------
Q 019309 94 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDP-LIHP---------- 155 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~a~~~---~~r~i~~SS~~v~~~~-~~~~---------- 155 (343)
++|++||+||......... +....+++|+.++..+.+++... +.|+|.+||....... ...+
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~ 160 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 160 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccc
Confidence 6999999999764333222 34457889999999999988642 2389999997542110 0000
Q ss_pred CCCC--------------CCCCCCCCCCCCchHHhHHHHHHHHHHHHHHh-------CCceEEEEeccccCC
Q 019309 156 QPET--------------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-------GIQIRIARIFNTYGP 206 (343)
Q Consensus 156 ~~e~--------------~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~-------~~~~~i~R~~~v~G~ 206 (343)
..+. ......+..+...|+.+|.....+.+.++.+. ++++..+.||+|-.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 161 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0000 00001223344679999999888776655442 799999999988654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.53 E-value=3.2e-13 Score=113.88 Aligned_cols=215 Identities=11% Similarity=-0.002 Sum_probs=132.6
Q ss_pred cCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-CCCceEEEEcccCCcc------------
Q 019309 27 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-GHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 27 ~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------ 91 (343)
.++|++|||||+| -||.++++.|.++| ++|++++|+.. ..+...+.. ......+...|+.+..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 5799999999987 69999999999999 99999998632 112222111 1245667888888752
Q ss_pred cCCCCEEEEecCCCCccccc-----cChHHHHHH---HHHHHHHHHHHHHHcCC---eEEEEeCCcccCCCCCCCCCCCC
Q 019309 92 LIEVDQIYHLACPASPIFYK-----YNPVKTIKT---NVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLIHPQPETY 160 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~-----~~~~~~~~~---nv~~~~~l~~~a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~ 160 (343)
+..+|++||++|........ ......... +............+... .++.+|+.+...
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~----------- 149 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------- 149 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence 23699999999866432221 121222222 22233333333333222 355555555432
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 019309 161 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQ 237 (343)
Q Consensus 161 ~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (343)
+......|+.+|...+.+.+..+.+ .|+++-.+.|+.+..+....... ............+.
T Consensus 150 -----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~-------- 214 (274)
T d2pd4a1 150 -----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD--FRMILKWNEINAPL-------- 214 (274)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT--HHHHHHHHHHHSTT--------
T ss_pred -----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc--hHHHHHHHhhhhhc--------
Confidence 2333457999999999988887765 47999999999888765322111 11122222221111
Q ss_pred eEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCc
Q 019309 238 TRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGE 270 (343)
Q Consensus 238 ~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~ 270 (343)
.-+..++|+|.+++.++.... .| .+.+.+|..
T Consensus 215 -~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 215 -RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -cCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh
Confidence 125678999999999997543 44 677777653
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.51 E-value=1.4e-13 Score=115.69 Aligned_cols=220 Identities=12% Similarity=0.033 Sum_probs=136.2
Q ss_pred ccCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------------
Q 019309 26 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------------ 91 (343)
Q Consensus 26 ~~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------ 91 (343)
++.+|++|||||+| .||.++++.|.++| ++|++..|+.....+.+.+.+. .+...+.+|+.+..
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~~~~~~~~~~~-~~~~~~~~dv~~~~~~~~~~~~v~~~ 80 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEA 80 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHHHHHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHcC-CceeeEeeecccccccccccchhhhc
Confidence 36889999999765 59999999999999 9999998854332233333332 45778899998752
Q ss_pred ---cCCCCEEEEecCCCCcccc------c---cChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeCCcccCCCCCCCCC
Q 019309 92 ---LIEVDQIYHLACPASPIFY------K---YNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLIHPQP 157 (343)
Q Consensus 92 ---~~~~d~vi~~a~~~~~~~~------~---~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~SS~~v~~~~~~~~~~ 157 (343)
...+|+++|++|....... . .+....+..|..........+..... .++.++|.....
T Consensus 81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~-------- 152 (268)
T d2h7ma1 81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR-------- 152 (268)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS--------
T ss_pred cccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc--------
Confidence 2248999999986532111 1 12223445566666666666554433 355555544321
Q ss_pred CCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCC----CCCc----cHHHHHHHHHHcC
Q 019309 158 ETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMN----IDDG----RVVSNFIAQALRG 226 (343)
Q Consensus 158 e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~----~~~~----~~~~~~~~~~~~~ 226 (343)
.......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+... .... .....+.......
T Consensus 153 --------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
T d2h7ma1 153 --------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR 224 (268)
T ss_dssp --------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred --------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhc
Confidence 2223457999999999999888865 3799999999987653210 0001 1111122222221
Q ss_pred CCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCcc
Q 019309 227 EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGEF 271 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~ 271 (343)
-++ .+.+..++|+|+++..++.... .| ++.+.+|...
T Consensus 225 ~pl--------~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 225 API--------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp CTT--------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGGG
T ss_pred CCC--------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCccc
Confidence 111 1125567999999999996543 44 6777776544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=3.8e-13 Score=111.23 Aligned_cols=201 Identities=18% Similarity=0.123 Sum_probs=133.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----------cCCCCE
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----------LIEVDQ 97 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~d~ 97 (343)
.|++|||||++.||+++++.|.++| ++|++.+|+.+. .+.....+|+.+.. ....+.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 68 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRREG-----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFA 68 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCCS-----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCccc-----------ccceEeeccccchhhhHHHHHhhhccccccc
Confidence 4889999999999999999999999 999999985422 24556677776541 124555
Q ss_pred EEEecCCCCccc--------cccChHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEeCCcccCCCCCCCCCC
Q 019309 98 IYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLIHPQPE 158 (343)
Q Consensus 98 vi~~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~a~~~----------~~-r~i~~SS~~v~~~~~~~~~~e 158 (343)
++++++...... ........++.|+.+...+...+... +. ++|++||...+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--------- 139 (241)
T d1uaya_ 69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--------- 139 (241)
T ss_dssp EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---------
T ss_pred hhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---------
Confidence 555554322111 11233456788888887777665432 23 899999987652
Q ss_pred CCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 019309 159 TYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPG 235 (343)
Q Consensus 159 ~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
+......|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+.... .............++ .+
T Consensus 140 -------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~----~~~~~~~~~~~~~~~--~~-- 204 (241)
T d1uaya_ 140 -------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG----LPEKAKASLAAQVPF--PP-- 204 (241)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT----SCHHHHHHHHTTCCS--SC--
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccch----hhhhHHHHHHhcCCC--CC--
Confidence 3334467999999999999998875 47999999999887653211 112222222322211 11
Q ss_pred ceeEeeeehHHHHHHHHHHHhcCC--CcceEecCCC
Q 019309 236 TQTRSFCYVSDMVDGLIRLMEGEN--TGPVNIGNPG 269 (343)
Q Consensus 236 ~~~~~~v~v~D~a~~i~~~~~~~~--~~~~~~~~~~ 269 (343)
-+..++|+|++++.++...- +..+.+.+|-
T Consensus 205 ----R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 205 ----RLGRPEEYAALVLHILENPMLNGEVVRLDGAL 236 (241)
T ss_dssp ----SCCCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred ----CCcCHHHHHHHHHHHHhCCCCCCCEEEECCcc
Confidence 24578999999999998543 4466666653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.46 E-value=1.6e-12 Score=110.20 Aligned_cols=211 Identities=15% Similarity=0.050 Sum_probs=133.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcc-----------------cCCc
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHD-----------------VTEP 90 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d-----------------~~~~ 90 (343)
.++||||++-||.++++.|.++| ++|++..|......+.+...+ .......+.+| +++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 47999999999999999999999 999988774322222222211 12234444444 4332
Q ss_pred ------------ccCCCCEEEEecCCCCcccccc----C--------------hHHHHHHHHHHHHHHHHHHHHc-----
Q 019309 91 ------------LLIEVDQIYHLACPASPIFYKY----N--------------PVKTIKTNVIGTLNMLGLAKRV----- 135 (343)
Q Consensus 91 ------------~~~~~d~vi~~a~~~~~~~~~~----~--------------~~~~~~~nv~~~~~l~~~a~~~----- 135 (343)
.+.++|++||+||......... + ....+..|+.++..+..++.+.
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 1236999999999654322111 1 1135677888877777765431
Q ss_pred -----CC-eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCC
Q 019309 136 -----GA-RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGP 206 (343)
Q Consensus 136 -----~~-r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~ 206 (343)
+. ++|.++|.... .+......|+.+|...+.+.+.++.+ +|+++-.+.||++-..
T Consensus 163 ~~~~~~~~~ii~~~s~~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~ 226 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTN----------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV 226 (284)
T ss_dssp GGGSCSCEEEEEECCTTTT----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCG
T ss_pred HHhcCCCCccccccccccc----------------CCccceeeeccccccchhhhHHHHHHhCCcccccccccccccccc
Confidence 22 67777776543 23344567999999999999988865 4799999999863221
Q ss_pred CCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC----CcceEecCCCccC
Q 019309 207 RMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN----TGPVNIGNPGEFT 272 (343)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~----~~~~~~~~~~~~s 272 (343)
. .......+.....-++ .+ -+..++|+|++++.++.... +..+.+.+|.+++
T Consensus 227 ~------~~~~~~~~~~~~~~pl--~~------R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 227 D------DMPPAVWEGHRSKVPL--YQ------RDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSLT 282 (284)
T ss_dssp G------GSCHHHHHHHHTTCTT--TT------SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred c------cCCHHHHHHHHhcCCC--CC------CCCCHHHHHHHHHHHhCchhcCccCCeEEECcChhcc
Confidence 1 1123344444333221 01 25678999999999996543 4467777776554
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.45 E-value=5.8e-12 Score=107.32 Aligned_cols=217 Identities=10% Similarity=0.008 Sum_probs=135.0
Q ss_pred hccCCCEEEEEcCch--hHHHHHHHHHHhcCCCeEEEEecCCCCC------------ccchhhhcCCC---ceEEEEccc
Q 019309 25 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVADNYFTGS------------KDNLKKWIGHP---RFELIRHDV 87 (343)
Q Consensus 25 ~~~~~~~ilItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------~~~~~~~~~~~---~~~~~~~d~ 87 (343)
+.+.+|++|||||+| -||.++++.|.++| .+|++..|..... ........... .+..+..++
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 345799999999987 79999999999999 9999988742100 00000000001 111222222
Q ss_pred CCc------------------------------ccCCCCEEEEecCCCCc---cc---cccChHHHHHHHHHHHHHHHHH
Q 019309 88 TEP------------------------------LLIEVDQIYHLACPASP---IF---YKYNPVKTIKTNVIGTLNMLGL 131 (343)
Q Consensus 88 ~~~------------------------------~~~~~d~vi~~a~~~~~---~~---~~~~~~~~~~~nv~~~~~l~~~ 131 (343)
.+. .+.++|++||+||.... .. ..++....+++|+.+...++.+
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 111 12369999999986421 11 2234557788999999999988
Q ss_pred HHHcCC---eEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHH----HhCCceEEEEecccc
Q 019309 132 AKRVGA---RILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHR----QHGIQIRIARIFNTY 204 (343)
Q Consensus 132 a~~~~~---r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~----~~~~~~~i~R~~~v~ 204 (343)
+..... +.+.+++..... ........|..+|...+.+.+.+.. ++|+++..+.||.+.
T Consensus 163 ~~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~ 227 (297)
T d1d7oa_ 163 FLPIMNPGGASISLTYIASER---------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG 227 (297)
T ss_dssp HGGGEEEEEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred HHHHhhcCCcceeeeehhhcc---------------cccccccceecccccccccccccchhccccceEEeccccccccc
Confidence 875543 456666655432 1222335699999988877665543 458999999999998
Q ss_pred CCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---C-cceEecCC
Q 019309 205 GPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---T-GPVNIGNP 268 (343)
Q Consensus 205 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~-~~~~~~~~ 268 (343)
.+.... ......+.+...+.-++. .+...+|+|.+++.++.... . ..+++.+|
T Consensus 228 T~~~~~--~~~~~~~~~~~~~~~Plg---------R~~~peevA~~v~fL~S~~a~~itGq~i~vDGG 284 (297)
T d1d7oa_ 228 SRAAKA--IGFIDTMIEYSYNNAPIQ---------KTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCCSSC--CSHHHHHHHHHHHHSSSC---------CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred chhhhh--ccCCHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 775322 123334444444432221 25678999999999996533 3 46666665
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.42 E-value=6.9e-12 Score=105.03 Aligned_cols=210 Identities=16% Similarity=0.123 Sum_probs=131.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc---CCCceEEEEcccCCc----------------c
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI---GHPRFELIRHDVTEP----------------L 91 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~----------------~ 91 (343)
..|||||++-||.++++.|.++| ++|++.+|+.+...+.+.+.+ ..........|..+. .
T Consensus 3 vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 999999986433322222221 123556666655432 1
Q ss_pred cCCCCEEEEecCCCCccccc---------------cChHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEeCCc
Q 019309 92 LIEVDQIYHLACPASPIFYK---------------YNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSE 146 (343)
Q Consensus 92 ~~~~d~vi~~a~~~~~~~~~---------------~~~~~~~~~nv~~~~~l~~~a~~~---------~~-r~i~~SS~~ 146 (343)
+.++|++||+||........ ......+..|.............. .. .++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 23699999999965432211 011233344444444444433322 12 466666655
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHH
Q 019309 147 VYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQA 223 (343)
Q Consensus 147 v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~ 223 (343)
.. .+......|+.+|...+.+.+.++.+ +|+++..+.||.+..+...+ ....+..
T Consensus 162 ~~----------------~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~------~~~~~~~ 219 (266)
T d1mxha_ 162 TD----------------LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP------QETQEEY 219 (266)
T ss_dssp GG----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC------HHHHHHH
T ss_pred cc----------------ccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC------HHHHHHH
Confidence 43 23334567999999999998888765 47999999999887654211 2233333
Q ss_pred HcCCCeEEecCCceeEeeeehHHHHHHHHHHHhcCC---Cc-ceEecCCCcc
Q 019309 224 LRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGEN---TG-PVNIGNPGEF 271 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~v~v~D~a~~i~~~~~~~~---~~-~~~~~~~~~~ 271 (343)
.+.-++ + +-+..++|+|.+++.++.... .| .+.+-+|-.+
T Consensus 220 ~~~~pl---~-----r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 220 RRKVPL---G-----QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp HTTCTT---T-----SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HhcCCC---C-----CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHhh
Confidence 332211 1 113568999999999997543 44 6777776543
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.26 E-value=3.5e-10 Score=97.30 Aligned_cols=161 Identities=8% Similarity=-0.015 Sum_probs=105.3
Q ss_pred CCEEEEEc--CchhHHHHHHHHHHhcCCCeEEEEecCCCCCccc------------hhhhc-CCCceEEEEccc------
Q 019309 29 NMRILVTG--GAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDN------------LKKWI-GHPRFELIRHDV------ 87 (343)
Q Consensus 29 ~~~ilItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~------------~~~~~-~~~~~~~~~~d~------ 87 (343)
+|.+|||| ++.-||..+++.|.++| .+|++..+........ ..... .........+|.
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 68899999 55799999999999999 9999887632111000 00000 011122333332
Q ss_pred --------------CCc------------ccCCCCEEEEecCCCCcc------ccccChHHHHHHHHHHHHHHHHHHHHc
Q 019309 88 --------------TEP------------LLIEVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV 135 (343)
Q Consensus 88 --------------~~~------------~~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~a~~~ 135 (343)
.+. ...++|++||+||..... ...+++...+++|+.++..+++++...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 222 123699999999865321 122345667889998888888888654
Q ss_pred ---CCeEEEEeCCcccCCCCCCCCCCCCCCCCCCCCCCCchHHhHHHHHHHHHHHHHH----hCCceEEEEeccccC
Q 019309 136 ---GARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIQIRIARIFNTYG 205 (343)
Q Consensus 136 ---~~r~i~~SS~~v~~~~~~~~~~e~~~~~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~~~~~i~R~~~v~G 205 (343)
+.++|.+||...... .+.....|+.+|...|.+.+.++.+ +|+++-.+.||.|-.
T Consensus 161 m~~~GsIv~iss~~~~~~---------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKV---------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhccc---------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 227999998765421 1111346999999999888887743 589999999997754
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.25 E-value=4.5e-11 Score=99.40 Aligned_cols=223 Identities=13% Similarity=0.028 Sum_probs=117.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
+|.||||||++.||.++++.|.++| ++|++++|+.......+. .....+....|........+|+++++||....
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~- 75 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAEVIADLS---TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQ- 75 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEECCTT---SHHHHHHHHHHHHTTCTTCCSEEEECCCCCTT-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHhc---CHHHHHHHHHHHHHHhCCCCcEEEEcCCCCCc-
Confidence 3678999999999999999999999 999999985422111111 00011111122222233469999999985432
Q ss_pred ccccChHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEeCCcccCCC-CCCCCCCC-----------CCCCCCCCCCCC
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDP-LIHPQPET-----------YWGNVNPIGVRS 171 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a----~~~~~-r~i~~SS~~v~~~~-~~~~~~e~-----------~~~~~~~~~~~~ 171 (343)
..........|..+...+.+.. .+... ....+++....... ...+.... .........+..
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~ 153 (257)
T d1fjha_ 76 --TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL 153 (257)
T ss_dssp --CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchH
Confidence 2333445566766666555544 33333 45555544322110 00000000 000000111223
Q ss_pred chHHhHHHHHHHHHHHHHH---hCCceEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeEeeeehHHHH
Q 019309 172 CYDEGKRVAETLMFDYHRQ---HGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMV 248 (343)
Q Consensus 172 ~Y~~~K~~~E~~~~~~~~~---~~~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D~a 248 (343)
.|+.+|...+.+.+.++.+ +|+++-.+.||.+-.+....... -....+...+.. . + .--+..++|+|
T Consensus 154 ~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~-~-----P--lgR~g~p~eva 223 (257)
T d1fjha_ 154 AYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAKFV-P-----P--MGRRAEPSEMA 223 (257)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CC-C-----S--TTSCCCTHHHH
T ss_pred HHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC--CHHHHHHHHhcC-C-----C--CCCCcCHHHHH
Confidence 5999999999988888754 47999999999886654211000 000111111110 0 1 11256789999
Q ss_pred HHHHHHHhcCC---Cc-ceEecCC
Q 019309 249 DGLIRLMEGEN---TG-PVNIGNP 268 (343)
Q Consensus 249 ~~i~~~~~~~~---~~-~~~~~~~ 268 (343)
+++..++.... .| .+.+.+|
T Consensus 224 ~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 224 SVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp HHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhCchhCCccCceEEeCCC
Confidence 99999996543 44 6666555
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.90 E-value=5.7e-11 Score=94.02 Aligned_cols=78 Identities=9% Similarity=0.133 Sum_probs=59.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----ccCCCCEEEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----LLIEVDQIYH 100 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~d~vi~ 100 (343)
...+|+|+||||+|.||..+++.|.++| .+|+++.|+.+...+..........+.+..+|+.+. .+.++|+|||
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence 3488999999999999999999999999 999999996433222222222223556677888765 3558999999
Q ss_pred ecCC
Q 019309 101 LACP 104 (343)
Q Consensus 101 ~a~~ 104 (343)
+||.
T Consensus 99 ~Ag~ 102 (191)
T d1luaa1 99 AGAI 102 (191)
T ss_dssp CCCT
T ss_pred cCcc
Confidence 9985
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.31 E-value=1.6e-06 Score=64.30 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=70.4
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh----cCCCceEEEEcccCCcccCCCCEEEE
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW----IGHPRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
|+.+|||.|+|+ |++|..++..|..++. .+++++++..........++ ..........+|.. ++.++|+|+.
T Consensus 2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--~~~~adivvi 78 (146)
T d1ez4a1 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--DCKDADLVVI 78 (146)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--GGTTCSEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--HhccccEEEE
Confidence 456799999995 9999999999999984 58999987432111111111 11223455566653 5678999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
++|... ....+..+....|+.-...+++...+.+-
T Consensus 79 tag~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p 113 (146)
T d1ez4a1 79 TAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGF 113 (146)
T ss_dssp CCCC------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred eccccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 998532 23345556778899999999999999876
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.26 E-value=2.8e-06 Score=61.98 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=52.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
|+|+|+|+ |.+|+.+++.|.+.| ++|++++.+ ++......+..+..++.+|..++. +.++|+++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d----~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDID----KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecCC----hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 89999996 999999999999999 999999863 333333222236789999999874 34789888764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.18 E-value=1.7e-05 Score=58.46 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=74.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCC-cc----chhhhc--CCCceEEEE-cccCCcccCCCCEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGS-KD----NLKKWI--GHPRFELIR-HDVTEPLLIEVDQIYH 100 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~-~~----~~~~~~--~~~~~~~~~-~d~~~~~~~~~d~vi~ 100 (343)
|||.|+||+|.+|++++..|..++. .++..+++..... .+ .+.... ....++... ++-.-..+.++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 7899999999999999999999984 5888888742111 01 111111 122334322 2222246678999999
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEE
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 142 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~ 142 (343)
+||.. .....+..+.+..|..-...++....+++- .++.+
T Consensus 81 tAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 81 TSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99853 233446678899999999999999988765 44433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.18 E-value=3.9e-06 Score=62.79 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=74.8
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc-----CCCceEEEEcccCCcccCCCCEE
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI-----GHPRFELIRHDVTEPLLIEVDQI 98 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~d~v 98 (343)
+++.+++||.|.|+ |.+|+.++..|...+..++.+++...........++. ..........+..+.++.+.|+|
T Consensus 2 ~~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiV 80 (154)
T d1pzga1 2 ALVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCV 80 (154)
T ss_dssp CCCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEE
T ss_pred ccccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeE
Confidence 45667889999997 9999999998888885588888764422111111111 11122222223234456789999
Q ss_pred EEecCCCCccc---cccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 99 YHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 99 i~~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
+.++|...... ...+..+....|..-...+++...+.+-
T Consensus 81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p 122 (154)
T d1pzga1 81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 122 (154)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC
Confidence 99998543211 1124566788899999999999999886
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=4.7e-06 Score=61.51 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=56.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC---CeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK---NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~~~ 105 (343)
+||.|+||||++|+.+++.|+++.. .+++.+..+....... .. ..... ...++.+ ..+.++|++|.+++.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~--~~-~~~~~--~~~~~~~~~~~~~~DivF~a~~~- 75 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP--SF-GGTTG--TLQDAFDLEALKALDIIVTCQGG- 75 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC--GG-GTCCC--BCEETTCHHHHHTCSEEEECSCH-
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc--cc-cCCce--eeecccchhhhhcCcEEEEecCc-
Confidence 5899999999999999999888742 3566665432211110 11 11111 1112222 245689999998741
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.....+...+.+.|.+.+.++..+.|
T Consensus 76 -----------------~~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 76 -----------------DYTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp -----------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred -----------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence 11345666777788765555554444
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.14 E-value=5.6e-06 Score=61.12 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcC--CCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
.|+|.|+||||++|+.|++.|.+++ ..++..+....... +.. ....-+....++.+....++|++|.+++..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G-k~i----~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~- 75 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG-QRM----GFAESSLRVGDVDSFDFSSVGLAFFAAAAE- 75 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT-CEE----EETTEEEECEEGGGCCGGGCSEEEECSCHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC-cce----eeccccchhccchhhhhccceEEEecCCcc-
Confidence 3899999999999999999998655 24676664321111 111 111223333444455566899999877311
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 147 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v 147 (343)
....+...+.+.|+++|=.||.+-
T Consensus 76 -----------------~s~~~~~~~~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 76 -----------------VSRAHAERARAAGCSVIDLSGALE 99 (144)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEETTCTTT
T ss_pred -----------------hhhhhccccccCCceEEeechhhc
Confidence 123455666778889998888754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=98.11 E-value=5e-06 Score=64.04 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec-CCCCCc-cchh----hhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN-YFTGSK-DNLK----KWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~-~~~~----~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
+|||.|.|||||+|+.|++.|.++...++..+.- ...... +... .........+...+..+....++|++|.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 4799999999999999999999987567766543 211111 1111 111122333333333344456799999886
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
... ....++..+.+.++++|=.|+.+-+
T Consensus 81 p~~------------------~s~~~~~~~~~~~~~vIDlSadfRl 108 (179)
T d2g17a1 81 AHE------------------VSHDLAPQFLQAGCVVFDLSGAFRV 108 (179)
T ss_dssp CHH------------------HHHHHHHHHHHTTCEEEECSSTTSS
T ss_pred cch------------------hHHHHhhhhhhcCceeecccccccc
Confidence 311 1224566667788899999987654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.1e-05 Score=59.33 Aligned_cols=111 Identities=16% Similarity=0.060 Sum_probs=72.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-C-CCeEEEEecCCCCCccchhhhcC---CCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVADNYFTGSKDNLKKWIG---HPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g-~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|||.|+|++|.+|++++..|..+ + ..++..++... .......++.. ......+.+.-...++.+.|+||.++|.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 89999999999999999887643 4 26888887632 21111112211 1222222222122356789999999985
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ....+..+.+..|..-...+++...+++- .+|.+|
T Consensus 80 ~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 80 RR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 42 33446667889999999999999998875 455555
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.99 E-value=6.6e-05 Score=55.11 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=74.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
|||.|+|| |.+|++++..|...+. .+++.+++.............. ....++...+. ..++.++|+|+.++|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 79999996 9999999999999984 5899998754322211111111 12334433222 235789999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
... ....+..+....|..-...+++...+.+- .++.+|
T Consensus 79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 532 33345667788999999999999988765 344433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.97 E-value=7.7e-05 Score=54.60 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=71.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcC----CCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
+||.|+|+ |.+|+.++..|+.++. .++.++++..........++.. ........+| ..++.++|+|+.+||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc--HHHhCCCceEEEeccc
Confidence 58999997 9999999999999984 4799998765433222222221 1233333333 3467789999999985
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ....+..+....|..-...+++...+++- .+|.+|
T Consensus 79 ~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 79 NR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred cc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 42 33456677889999999999999998876 355443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.97 E-value=3e-05 Score=57.40 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh-----cCCCceEEEEcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW-----IGHPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
.++||.|+|+ |++|++++..|..++. .++..+++..........++ .....+.+...|. .++.++|+||.+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvit 81 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVIC 81 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEEC
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEEe
Confidence 4579999996 9999999999999984 47888887432111111111 1122445555554 456789999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
+|... .......+....|..-...+++...+++- .+|.+|
T Consensus 82 ag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 82 AGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 98543 33445567778899999999999988875 455544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.92 E-value=2.5e-05 Score=57.41 Aligned_cols=109 Identities=14% Similarity=0.004 Sum_probs=73.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCC---CceEEEEcccC-CcccCCCCEEEEecCCC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGH---PRFELIRHDVT-EPLLIEVDQIYHLACPA 105 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~-~~~~~~~d~vi~~a~~~ 105 (343)
||.|+||+|.+|++++..|..++. .+++.++... ......++... ......-..-. ...+.++|+||.++|..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc--cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 799999999999999999999884 4688887632 11111122211 11222211111 23467899999999853
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
. ....+..+.+..|+.-...++..+.+++. .++.+|
T Consensus 80 ~--~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 80 R--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp C--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred C--CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2 33446677889999999999999999976 455544
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.91 E-value=5e-06 Score=61.24 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=54.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC---CeEEEEecCCCCCccchhhhcCCCceEEEEcccCC-cccCCCCEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK---NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA 105 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~d~vi~~a~~~ 105 (343)
|||.|.|||||+|+.|++.|+++.. .++..+.-+... ....... ....... +..+ ..+.++|+||.|....
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~--gk~~~~~--~~~~~~~-~~~~~~~~~~~DvvF~alp~~ 75 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG--VPAPNFG--KDAGMLH-DAFDIESLKQLDAVITCQGGS 75 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS--SBCCCSS--SCCCBCE-ETTCHHHHTTCSEEEECSCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc--ccccccC--Ccceeee-cccchhhhccccEEEEecCch
Confidence 7899999999999999999987542 245544432111 1111111 1111111 1222 2356899999887311
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCe--EEEEeCCcc
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 147 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r--~i~~SS~~v 147 (343)
....+...+.+.|.+ +|=.||.+-
T Consensus 76 ------------------~s~~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 76 ------------------YTEKVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp ------------------HHHHHHHHHHHTTCCSEEEESSSTTT
T ss_pred ------------------HHHHHhHHHHHcCCceEEEeCCcccc
Confidence 134566777778875 666677653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=5.3e-05 Score=55.42 Aligned_cols=109 Identities=14% Similarity=0.066 Sum_probs=73.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh---c-CCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW---I-GHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
|||.|.|+ |.+|++++..|..++. .++..+++..........++ . -........+| ..++.++|+|+.++|.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 79999996 9999999999999884 47888886432111111110 0 12344455444 3357899999999985
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. .......+.+..|..-...+++...+.+- .++.+|
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 43 23345567788899999999999998876 444433
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=1.3e-05 Score=60.73 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=31.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
|||+|+|+ |.+|+.++..|.+.| ++|+++.|...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 89999997 999999999999999 99999999654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.82 E-value=0.00011 Score=53.67 Aligned_cols=109 Identities=13% Similarity=-0.017 Sum_probs=74.6
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecCCCC-Ccc-chhhh----cCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKN-EVIVADNYFTG-SKD-NLKKW----IGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~-~~~-~~~~~----~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
||.|+||+|.+|++++..|..++.. ++..++..... ..+ ...++ ......++..+|. .++.++|+|+.+||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~--~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY--EDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG--GGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH--HHhhhcCEEEEecc
Confidence 7999999999999999999999843 68877752211 110 11111 1123445555543 35678999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
... ....+..+.+..|..-...+++...+.+- .++.+|
T Consensus 80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 532 33346678899999999999999998875 455544
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.81 E-value=4.4e-05 Score=56.99 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=74.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh-----cCCCceEEEEcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW-----IGHPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
+++||.|+|+ |.+|+.++..|..+|. .++..+++..+.......++ ..........+| -.++.++|+|+..
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVit 95 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVVT 95 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEEC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEEe
Confidence 4679999996 9999999999999994 47888886432211111111 111122222233 2457789999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
||... ....+..+....|..-...++....+.+- -+|.+|
T Consensus 96 Ag~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 96 AGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp CSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 98543 23345567788899999999999998876 455555
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.79 E-value=0.00013 Score=51.12 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
..+++|||+| .|-+|..-++.|++.| .+|++++.. ..+....+....++++......+..+.+++.|+.+.+..
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~g-a~v~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~- 83 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAG-ARLTVNALT---FIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD- 83 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTT-BEEEEEESS---CCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH-
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEecc---CChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCH-
Confidence 3789999999 7899999999999999 999998753 344555555667899999888888888999998665311
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
..| ..+...|++.++
T Consensus 84 ------------~~n----~~i~~~a~~~~i 98 (113)
T d1pjqa1 84 ------------TVN----QRVSDAAESRRI 98 (113)
T ss_dssp ------------HHH----HHHHHHHHHTTC
T ss_pred ------------HHH----HHHHHHHHHcCC
Confidence 122 357778888774
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=7.3e-05 Score=54.71 Aligned_cols=109 Identities=16% Similarity=0.060 Sum_probs=72.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhh---c--CCCceEEEE-cccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKW---I--GHPRFELIR-HDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~~-~d~~~~~~~~~d~vi~~a 102 (343)
|||.|+|+ |.+|++++..|..++. .++..+++..........++ . -....++.. .|. .++.+.|+|+-.+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH--HHhccccEEEEec
Confidence 89999996 9999999999998884 47888886432111111111 0 111223333 332 4778899999999
Q ss_pred CCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 103 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
|... ....+..+....|..-...+++...+.+- .++.+|
T Consensus 78 g~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 8432 33446677888999999999999998875 344443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=6.3e-05 Score=50.79 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
.+|+|+|+|. |--|.++++.|.+.| ++|++.+...... ....+. ....+..+...+..+.++|.||-.-|...
T Consensus 4 ~~K~v~ViGl-G~sG~s~a~~L~~~g-~~v~~~D~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~SPGi~~- 76 (93)
T d2jfga1 4 QGKNVVIIGL-GLTGLSCVDFFLARG-VTPRVMDTRMTPP---GLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIAL- 76 (93)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESSSSCT---TGGGSC-TTSCEEESBCCHHHHHHCSEEEECTTSCT-
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHHCC-CEEEEeeCCcCch---hHHHHh-hccceeecccchhhhccCCEEEECCCCCC-
Confidence 6789999995 888999999999999 9999998743221 122222 34555555555555567899998665321
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i 140 (343)
+. .++..|++.++++|
T Consensus 77 ----~~-------------~~~~~a~~~gi~ii 92 (93)
T d2jfga1 77 ----AH-------------PSLSAAADAGIEIV 92 (93)
T ss_dssp ----TS-------------HHHHHHHHTTCEEE
T ss_pred ----CC-------------HHHHHHHHcCCCeE
Confidence 11 47778888888765
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.75 E-value=0.00014 Score=54.02 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=70.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCe------EEEEecCCCCCccchhhh------cCCCceEEEEccc-CCcccCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNE------VIVADNYFTGSKDNLKKW------IGHPRFELIRHDV-TEPLLIEV 95 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~------V~~~~r~~~~~~~~~~~~------~~~~~~~~~~~d~-~~~~~~~~ 95 (343)
-|||.|+||+|++|++++..|...+... ...+.- ....+..... ........+...- ...++.+.
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 81 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCchhhhcccc
Confidence 4799999999999999999999876311 122211 1111111111 1122333333332 23467899
Q ss_pred CEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEe
Q 019309 96 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTS 143 (343)
Q Consensus 96 d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~S 143 (343)
|+||.++|... ....+..+.+..|..-...+.....+.. +.++.+|
T Consensus 82 dvViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 82 DYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cEEEeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 99999998643 3455667888999999999999998853 2455555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.75 E-value=6.5e-05 Score=57.42 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=45.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCc-----ccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEP-----LLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-----~~~~~d~vi~~a 102 (343)
.|+|+|+|| |++|+++++.|.++| ++|++.+|+.. ....+.. .........+..+. .+...|.++.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr~~~----~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACRTLE----SAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI 75 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT-CEEEEEESCHH----HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECChH----HHHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence 489999986 999999999999999 99999998542 2222222 12333333333322 244677777654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.74 E-value=6e-05 Score=56.13 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
|-||.|+|||||+|+.|++.|.+++. .++..+.-. ...........-.....+..+....+.|.++.+++..
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-----~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~- 74 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-----RSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSS- 74 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-----GGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHH-
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-----ccccccccccCCcccccccchhhhhhhhhhhhccCcc-
Confidence 34899999999999999998888851 234443311 1111111111223333445555667889988877421
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCccc
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 148 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~ 148 (343)
.....+..+.+.++++|=.|+..-+
T Consensus 75 -----------------~s~~~~~~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 75 -----------------TSAKYAPYAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred -----------------chhhHHhhhccccceehhcChhhhc
Confidence 1234555566778899988888654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.71 E-value=0.00015 Score=55.00 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=71.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC----C--eEEEEecCCCCCccchh----hh--cCCCceE-EEEcccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK----N--EVIVADNYFTGSKDNLK----KW--IGHPRFE-LIRHDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~----~--~V~~~~r~~~~~~~~~~----~~--~~~~~~~-~~~~d~~~~~~~~~d 96 (343)
.||.|+||+|.||++++..|.+... . .++.++... ....+. ++ ...+... .+.++-...++.+.|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~--~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER--SFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc--ccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 4899999999999999999987531 1 344544321 111111 11 1112222 232333344677899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcC---CeEEEEe
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTS 143 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~---~r~i~~S 143 (343)
+||-++|.. .....+..+.+..|..-...+..+..++. ++++.+|
T Consensus 103 vVvi~ag~~--rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 103 WALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred eEEEeeccC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 999999853 34556777889999999999999998863 3566655
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.67 E-value=0.00017 Score=52.66 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=73.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhc----CCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWI----GHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.||.|+|+ |.+|++++..|..++. .++.++++..........++. ......+...+-. .++.++|+|+.+||.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence 47999996 9999999999999984 478888864321111111111 0122333333222 356789999999985
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
.. ....+..+.+..|..-...++....+++- .++.+|
T Consensus 80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 43 34456678889999999999999998876 344444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.67 E-value=0.00032 Score=51.62 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=72.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
++||.|+|+ |.+|++++..|...+..++.++++..........++.. .....+...+ ....+.+.|+|+.++|
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag 80 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEecc
Confidence 479999995 99999999888888766888888754322211111111 1222333222 2245678999999998
Q ss_pred CCCccc---cccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~---~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
...... ...+..+.+..|..-...+++...+.+- .++.+|
T Consensus 81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 543211 1123456788999999999999998876 344443
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=0.00016 Score=51.71 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=53.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCccc
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 109 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~ 109 (343)
|||.|.|++|-+|+.|++.+.+++ +++.+..-. . . ...+.++|+||.+..+..
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~-~~l~~~id~---~-----------~---------~~~~~~~DVvIDFS~p~~--- 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG-HELVLKVDV---N-----------G---------VEELDSPDVVIDFSSPEA--- 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEET---T-----------E---------EEECSCCSEEEECSCGGG---
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC-CeEEEEECC---C-----------c---------HHHhccCCEEEEecCHHH---
Confidence 789999999999999999999988 776654210 0 0 112346899998874322
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 110 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 110 ~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+...++.|.++++++|.=+|.
T Consensus 54 ---------------~~~~l~~~~~~~~p~ViGTTG 74 (128)
T d1vm6a3 54 ---------------LPKTVDLCKKYRAGLVLGTTA 74 (128)
T ss_dssp ---------------HHHHHHHHHHHTCEEEECCCS
T ss_pred ---------------HHHHHHHHHhcCCCEEEEcCC
Confidence 457888999999987754443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.61 E-value=0.00016 Score=52.89 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=65.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-----CCceEEE-EcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-----HPRFELI-RHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~d~~~~~~~~~d~vi~~a~ 103 (343)
+||.|+|+ |.+|.+++..|..++..++..++...........++.. ....++. ..|.. ++.+.|+||-+||
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~--~~~~advvvitag 78 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA--DTANSDVIVVTSG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG--GGTTCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH--HhcCCCEEEEeee
Confidence 68999996 99999999999998855888888644322111112211 1122333 22322 4578999999998
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
... ....+..+.+..|..-...++....+.+-
T Consensus 79 ~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p 110 (142)
T d1uxja1 79 APR--KPGMSREDLIKVNADITRACISQAAPLSP 110 (142)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHGGGCT
T ss_pred ccC--CcCcchhHHHhHHHHHHHHHHHHHhccCC
Confidence 542 22344456678899999999999998776
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.54 E-value=0.00021 Score=53.73 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=43.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||.|.| .|.+|+.+++.|.+.| ++|++++|+.. ......+...+....-++ ..+.++|+||-+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g-~~V~~~d~~~~----~~~~a~~~~~~~~~~~~~--~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQS----TCEKAVERQLVDEAGQDL--SLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHH----HHHHHHHTTSCSEEESCG--GGGTTCSEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCch----HHHHHHHhhccceeeeec--ccccccccccccC
Confidence 8899998 6999999999999999 99999998532 222111111122222222 2456899998654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.54 E-value=4e-05 Score=59.64 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=32.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|||.|+||+|.+|++|++.|.++| ++|++..|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCH
Confidence 899999999999999999999999 9999999853
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=0.00019 Score=51.88 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=50.1
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
|+++|+|+ |.+|+++++.|.++| ++|++++.+ .+..... .......+.+|.+++. +.++|.||-+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g-~~vvvid~d----~~~~~~~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDIN----EEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESC----HHHHHHT-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEecCc----HHHHHHH-HHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence 56889985 999999999999999 999999862 3333333 3456778889998874 33688888655
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=6.2e-05 Score=56.11 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=71.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhc---C--CCceEEEEcccCCcccCCCCEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWI---G--HPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
...||.|+|+ |.+|++++..|..++. .++.++++..........++. . .........|. ..+.++|+||.+
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~--~~~~~adivvit 94 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY--NVSANSKLVIIT 94 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG--GGGTTEEEEEEC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch--hhhccccEEEEe
Confidence 4468999995 9999999999999984 478888864221111111111 1 11222233332 355789999999
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 102 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
||... ....+..+.+..|..-...++....+.+- .++.+|
T Consensus 95 ag~~~--~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 95 AGARM--VSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp CSCCC--CTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred ccccc--CCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 98543 22344456678899989999888888766 455544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00014 Score=54.48 Aligned_cols=98 Identities=18% Similarity=0.340 Sum_probs=59.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEE-ecCCCCCc-cchhhhcC--CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVA-DNYFTGSK-DNLKKWIG--HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~-~~~~~~~~--~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+||.|.|++|-+|+.|++.+.+....++++. +|...... ........ ..++.+ .-| .+..+..+|+||.+.-
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~~-~~~~~~~~DViIDFs~ 80 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSS-LDAVKDDFDVFIDFTR 80 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESC-STTTTTSCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee-ecc-HHHHhcccceEEEecc
Confidence 458999999999999999999999864565444 33221111 11111111 112222 222 2344557999998762
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+ .++...++.|.++++.+|.=+|.
T Consensus 81 p------------------~~~~~~~~~a~~~~~~~ViGTTG 104 (162)
T d1diha1 81 P------------------EGTLNHLAFCRQHGKGMVIGTTG 104 (162)
T ss_dssp H------------------HHHHHHHHHHHHTTCEEEECCCC
T ss_pred H------------------HHHHHHHHHHHhccceeEEecCC
Confidence 1 23456888999999888765544
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.45 E-value=6.5e-05 Score=57.69 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=29.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
++++||.|+|||||.|+.|++.|.++...++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45679999999999999999999998755766664
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.43 E-value=0.00017 Score=52.87 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=69.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhc-----CCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+||.|+|+ |++|+.++..|+.++. .++..+++..........++. ..........|. .++.++|+||-+||
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~--~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTLG 78 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH--HHhccccEEEEecc
Confidence 78999995 9999999999999883 478888864322111111111 112334444443 35678999999998
Q ss_pred CCCccc--cccChHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 104 PASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 104 ~~~~~~--~~~~~~~~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
...... ...+-.+....|..-...+++...+.+- .+|.+|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 532111 1112234567899999999999988875 344433
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.39 E-value=0.00032 Score=52.05 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=67.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCC------eEEEEecCCCCCccchhhh------cCCCceEEEE-cccCCcccCCCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKN------EVIVADNYFTGSKDNLKKW------IGHPRFELIR-HDVTEPLLIEVD 96 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~~~~~~~~------~~~~~~~~~~-~d~~~~~~~~~d 96 (343)
|||.|+||+|.+|++++..|...+.+ +++.++.. ........+ ........+. .+-....+.++|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 79999999999999999999875421 34444432 111111111 1122333222 222334677899
Q ss_pred EEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEe
Q 019309 97 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS 143 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~-~~--r~i~~S 143 (343)
+||-++|... ....+..+.+..|..-...+.....++ +- .+|.+|
T Consensus 82 vVVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 82 VAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp EEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 9999998543 233445567788999999999888775 43 344444
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.32 E-value=5.4e-05 Score=56.66 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=49.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
..+++|||+|+ |-+|+.+++.|.+.|..+++++.|.... ...+...+ +.+....+-....+.++|+||.+.+.
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~k-a~~l~~~~---~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYER-AVELARDL---GGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHH-HHHHHHHH---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHH-HHHHHHhh---hcccccchhHHHHhccCCEEEEecCC
Confidence 36789999996 9999999999999994479888884322 12222221 33443333333455689999999863
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.30 E-value=0.00067 Score=51.15 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=45.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|+|+|.| .|.+|..+++.|.+.|. .+|++++|+ .+.+........+.....+.......++|.||.+.
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDIN----PESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSC----HHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECC----hHHHHHHHHhhcchhhhhhhhhhhccccccccccC
Confidence 5799998 69999999999999992 368888874 22222222222333444444444556789999776
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.26 E-value=0.0014 Score=43.30 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=58.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
+|||.++|-.|-==+.|++.|+++| +.|...++.. .+... .++..++++..+ -....+.+.|.||...+..
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G-~~VsGSD~~~---~~~t~-~L~~~Gi~i~~g-h~~~~i~~~d~vV~SsAI~--- 71 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNG-NDVYGSNIEE---TERTA-YLRKLGIPIFVP-HSADNWYDPDLVIKTPAVR--- 71 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSSC---CHHHH-HHHHTTCCEESS-CCTTSCCCCSEEEECTTCC---
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCC-CeEEEEeCCC---ChhHH-HHHHCCCeEEee-ecccccCCCCEEEEecCcC---
Confidence 4899999866655567999999999 9999999853 22222 234457777654 2233456799999877542
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i 140 (343)
.+++ -+.+|++.|+++.
T Consensus 72 --~~np-------------el~~A~~~gIpv~ 88 (89)
T d1j6ua1 72 --DDNP-------------EIVRARMERVPIE 88 (89)
T ss_dssp --TTCH-------------HHHHHHHTTCCEE
T ss_pred --CCCH-------------HHHHHHHcCCCcc
Confidence 2222 4567777776554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.23 E-value=0.00014 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
+..++|.|.||.|.+|+.+++.|.+.| |+|++++|..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEeccccc
Confidence 355799999999999999999999999 9999999853
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.00029 Score=53.33 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
++||.|+||||++|+.|++.|.+....++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 369999999999999999999988755666664
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.19 E-value=0.0012 Score=49.69 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=54.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
|+++||.|.| .|++|+.+++.|.+....+++++........ ........+-.+....++|+|+.+.....
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~ 70 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TKTPVFDVADVDKHADDVDVLFLCMGSAT 70 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SSSCEEEGGGGGGTTTTCSEEEECSCTTT
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccc---------cccccccchhhhhhccccceEEEeCCCcc
Confidence 4678999999 6999999999999876567666543221111 11222223323334457999998764322
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 141 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~ 141 (343)
...++..|.++|+++|.
T Consensus 71 ------------------h~~~a~~aL~aG~~vv~ 87 (170)
T d1f06a1 71 ------------------DIPEQAPKFAQFACTVD 87 (170)
T ss_dssp ------------------HHHHHHHHHTTTSEEEC
T ss_pred ------------------cHHHHHHHHHCCCcEEE
Confidence 12467778888877663
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.14 E-value=0.0001 Score=55.95 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=47.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCC--cccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTE--PLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~d~vi~~a~ 103 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++... .+...++.. ..+ +...|..+ ....++|+||.+.|
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~-~~~~~~lGa-~~~-i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEK-LALPLALGA-EEA-ATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGG-SHHHHHTTC-SEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCCCEEEEEeccccchhhhhhhhcccc-cccccccccccc-ccccccccc-cee-eehhhhhhhhhccccccccccccc
Confidence 477899999999999999999999999 899998875322 222232211 111 11111111 13347999999876
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.0028 Score=45.34 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=52.2
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcccc
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFY 110 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~~~ 110 (343)
||.|.|++|-+|+.+++.+.+...+++.+..-. .+.+. .....++|+||.+..+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~----~~~~~----------------~~~~~~~DvvIDFS~p~~---- 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA----GDPLS----------------LLTDGNTEVVIDFTHPDV---- 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT----TCCTH----------------HHHTTTCSEEEECCCTTT----
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec----CCchh----------------hhccccCCEEEEcccHHH----
Confidence 699999999999999999888765676554311 11111 112246899999874432
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 111 KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 111 ~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+...++.|.++++.+|.=+|
T Consensus 57 --------------~~~~~~~~~~~~~~~ViGTT 76 (135)
T d1yl7a1 57 --------------VMGNLEFLIDNGIHAVVGTT 76 (135)
T ss_dssp --------------HHHHHHHHHHTTCEEEECCC
T ss_pred --------------HHHHHHHHHhcCCCEEEecc
Confidence 45688899999998765443
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00028 Score=45.27 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=33.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..+++|||+||+|-+|...++.+...| .+|+++++++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~~t~s~ 66 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRE 66 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEEEECCH
Confidence 467899999999999999999999999 9999998743
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.95 E-value=0.0038 Score=41.81 Aligned_cols=73 Identities=10% Similarity=-0.013 Sum_probs=50.2
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
+...|+|.+.|-.|--=+.|++.|.++| ++|...++.. .+....+.+ .++++..+.-.+ .+.+.|.||...+.
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G-~~VsGSD~~~---~~~~~~L~~-~Gi~v~~g~~~~-~i~~~d~vV~S~AI 77 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG-YQISGSDIAD---GVVTQRLAQ-AGAKIYIGHAEE-HIEGASVVVVSSAI 77 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT-CEEEEEESCC---SHHHHHHHH-TTCEEEESCCGG-GGTTCSEEEECTTS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCC-CEEEEEeCCC---ChhhhHHHH-CCCeEEECCccc-cCCCCCEEEECCCc
Confidence 4466899999755544477999999999 9999999753 333333333 477776655433 35678999887653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.94 E-value=0.0099 Score=42.10 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred CCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCC
Q 019309 28 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 104 (343)
Q Consensus 28 ~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~ 104 (343)
.-++|.|.|+| +..|..+.+.|.+.+.++|+.+.... +.. .++..+ -++.|- -..+|.++-+..
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~----~~i------~G~~~y-~sl~dl-p~~vDlvvi~vp- 73 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE----EEV------QGVKAY-KSVKDI-PDEIDLAIIVVP- 73 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC----SEE------TTEECB-SSTTSC-SSCCSEEEECSC-
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc----ccc------CCeEee-cchhhc-CCCCceEEEecC-
Confidence 44789999999 99999999999876656898886421 111 122211 122222 135899887652
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeCC
Q 019309 105 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 145 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~-r~i~~SS~ 145 (343)
-..+..+++.|.+.|+ .++.+|+.
T Consensus 74 -----------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 74 -----------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp -----------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred -----------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 1224568899999999 47777765
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0014 Score=51.55 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCEEEEEcC----------------chhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-
Q 019309 28 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP- 90 (343)
Q Consensus 28 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 90 (343)
.||+||||+| ||.+|.+|++++..+| ++|+++.-..... ....+..+...-.+.
T Consensus 5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G-a~V~li~g~~~~~--------~p~~~~~~~~~t~~~m 75 (223)
T d1u7za_ 5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVSLP--------TPPFVKRVDVMTALEM 75 (223)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCCCC--------CCTTEEEEECCSHHHH
T ss_pred CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC-CchhhhhcccccC--------cccccccceehhhHHH
Confidence 6899999975 7999999999999999 9999987532111 113555555433222
Q ss_pred ------ccCCCCEEEEecCCCC
Q 019309 91 ------LLIEVDQIYHLACPAS 106 (343)
Q Consensus 91 ------~~~~~d~vi~~a~~~~ 106 (343)
.+.++|++|++|+...
T Consensus 76 ~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 76 EAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp HHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHhhhccceeEeeeechhh
Confidence 3447999999998654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0007 Score=51.04 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=49.1
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
...+++|||+| +|-.+++++..|.+.| .+|+++.|+.... +.+...+. ...++ ..++.+....++|+|||+..
T Consensus 15 ~~~~k~vlIlG-aGGaarai~~al~~~g-~~i~I~nRt~~ka-~~l~~~~~~~~~~~--~~~~~~~~~~~~dliIN~Tp 88 (170)
T d1nyta1 15 IRPGLRILLIG-AGGASRGVLLPLLSLD-CAVTITNRTVSRA-EELAKLFAHTGSIQ--ALSMDELEGHEFDLIINATS 88 (170)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSHHHH-HHHHHHTGGGSSEE--ECCSGGGTTCCCSEEEECCS
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHhcccc-eEEEeccchHHHH-HHHHHHHhhccccc--ccccccccccccceeecccc
Confidence 34689999999 4777999999999999 7899999854222 22222221 12233 33444445567999999873
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.80 E-value=0.0012 Score=48.72 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=44.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||.+.| .|-+|+++++.|++.|.++|.+.+|+. +....+....++.... | ..++.++|+||-+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~----~~~~~l~~~~~~~~~~-~--~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGA----EKRERLEKELGVETSA-T--LPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSH----HHHHHHHHHTCCEEES-S--CCCCCTTSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCCh----hHHHHhhhhccccccc-c--cccccccceEEEec
Confidence 8999998 599999999999999878999998853 2222222212344332 2 23456789999765
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.77 E-value=0.0012 Score=49.91 Aligned_cols=75 Identities=19% Similarity=0.099 Sum_probs=47.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc----ccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP----LLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~d~vi~~a 102 (343)
..+.+|||.||+|-+|...++.+...| .+|++.++++.+ .+..... ....+.-.+.+..+. .-.++|+||.+.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~k-~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAE-HDYLRVL-GAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTC-HHHHHHT-TCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchHH-HHHHHhc-ccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 356789999999999999999999999 999999875433 2223322 212211111111111 123799999998
Q ss_pred CC
Q 019309 103 CP 104 (343)
Q Consensus 103 ~~ 104 (343)
|.
T Consensus 107 gg 108 (176)
T d1xa0a2 107 GG 108 (176)
T ss_dssp TT
T ss_pred Cc
Confidence 63
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.76 E-value=0.0017 Score=49.38 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=33.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.++.+|||+||+|-+|...++.....| .+|++++++
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~ 63 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGS 63 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCC
Confidence 468899999999999999999999999 999999874
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.75 E-value=0.0033 Score=44.21 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred hhhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 23 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 23 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
.+.....++|+|.| .|++|-.++..|.++| .+|+++.+...
T Consensus 24 ~~~~~~~~~vvIIG-gG~iG~E~A~~l~~~g-~~Vtli~~~~~ 64 (121)
T d1d7ya2 24 QAGLRPQSRLLIVG-GGVIGLELAATARTAG-VHVSLVETQPR 64 (121)
T ss_dssp HHHCCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred HHhhhcCCeEEEEC-cchhHHHHHHHhhccc-ceEEEEeeccc
Confidence 34445678999999 8999999999999999 99999998653
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0028 Score=43.74 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=47.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-------CCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-------IEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~d~vi 99 (343)
+...||.|+| +|.+|+.++....+.| +++++++......... -.-+++.+|+.|... .++|+|-
T Consensus 9 ~~~~kigIlG-gGQL~rMla~aA~~lG-~~v~v~d~~~~~PA~~-------va~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 9 PAATRVMLLG-SGELGKEVAIECQRLG-VEVIAVDRYADAPAMH-------VAHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp TTCCEEEEES-CSHHHHHHHHHHHTTT-CEEEEEESSTTCGGGG-------GSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEEe-CCHHHHHHHHHHHHCC-CEEEEEcCCCCCchhh-------cCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 3457899999 8999999999999999 9999998754322111 123567788877632 2578886
Q ss_pred E
Q 019309 100 H 100 (343)
Q Consensus 100 ~ 100 (343)
.
T Consensus 80 ~ 80 (111)
T d1kjqa2 80 P 80 (111)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.71 E-value=0.0015 Score=50.66 Aligned_cols=32 Identities=34% Similarity=0.473 Sum_probs=29.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|||.|.| .||+|..++..|.+.| ++|++++.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g-~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC-CcEEEEeCC
Confidence 8899997 9999999999999999 999999863
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.70 E-value=0.0014 Score=49.42 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=48.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcC-CCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIG-HPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++|+|+| +|-.|++++..|.+.+ .+|+++.|+... .+.+...+. ...+.... ..+..+..+|+|||+..
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~-~~i~I~nR~~~~-a~~l~~~~~~~~~~~~~~--~~~~~~~~~diiIN~tp 88 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQ-QNIVLANRTFSK-TKELAERFQPYGNIQAVS--MDSIPLQTYDLVINATS 88 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTT-CEEEEEESSHHH-HHHHHHHHGGGSCEEEEE--GGGCCCSCCSEEEECCC
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccC-ceeeeccchHHH-HHHHHHHHhhccccchhh--hccccccccceeeeccc
Confidence 3678999999 5667999999999877 899999996422 222222222 12333333 33445678999999974
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00032 Score=53.21 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~ 62 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGT 62 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEEeccccccccccccccccC-ccccccccc
Confidence 367899999999999999999999999 899998864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.002 Score=47.46 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=51.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
-+|+|+|. |-+|..+++.|.+.| ++|++++.............. ..++.++.||.+++. +.++|+||-+.
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 46899995 899999999999999 999998764322122223322 358999999999884 34689999765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.66 E-value=0.0017 Score=47.86 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=42.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||.|.| .|.+|+.+++.|+++| ++|++.++........... ++.+ .+..+....++|+||-|.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~-----~~~~--~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRG-VEVVTSLEGRSPSTIERAR-----TVGV--TETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT-CEEEECCTTCCHHHHHHHH-----HHTC--EECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCC-CeEEEEcCchhHHHHHhhh-----cccc--cccHHHHHhhcCeEEEEe
Confidence 7899998 7999999999999999 9999887643222111111 1111 112233455799999876
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.60 E-value=0.0019 Score=48.40 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=49.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc-----cCCCCEEEEe
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 101 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~d~vi~~ 101 (343)
+.+..|||+||+|-+|...++.....| .+|++++++.++ .+.+..+-. ..+ +..-|..... -.++|+||.+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k-~~~~~~lGa-d~v-i~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREA-ADYLKQLGA-SEV-ISREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSST-HHHHHHHTC-SEE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHH-HHHHHhhcc-cce-EeccchhchhhhcccCCCceEEEec
Confidence 345679999999999999999999999 999999885432 333333322 222 2222322221 2369999998
Q ss_pred cC
Q 019309 102 AC 103 (343)
Q Consensus 102 a~ 103 (343)
.|
T Consensus 98 vg 99 (167)
T d1tt7a2 98 VG 99 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 86
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.47 E-value=0.0053 Score=45.88 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=30.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|+|+| +|-+|...++.+...| .+|++++++
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~~ 59 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTARS 59 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhc-ccccccchH
Confidence 4578999998 6899999999999999 899999874
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.46 E-value=0.0031 Score=46.51 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=54.2
Q ss_pred cCCCEEEEEcCchhHHHHH-HHHHHhcCCCeEEEEe-cCCCCCccchhhhcCCCceEEEEccc----CCcccCCCCEEEE
Q 019309 27 QSNMRILVTGGAGFIGSHL-VDKLMENEKNEVIVAD-NYFTGSKDNLKKWIGHPRFELIRHDV----TEPLLIEVDQIYH 100 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l-~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~d~vi~ 100 (343)
..++||.|+| +|.+|+.+ .+.|.+....+++++. |+.......... ..++.+...++ .++.+.++|+||.
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~---~~~i~~~~~~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ---RMGVTTTYAGVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH---HTTCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh---hcCCcccccceeeeeecccccccCEEEE
Confidence 4567999999 99999865 4555444435676664 432221111111 12444444332 2334567999998
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
+... ........+-.+.+.|+++|-.|+.
T Consensus 78 ATpa----------------g~h~~~~~~~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 78 ATSA----------------SAHVQNEALLRQAKPGIRLIDLTPA 106 (157)
T ss_dssp CSCH----------------HHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred cCCc----------------hhHHHhHHHHHHHHcCCEEEEcccc
Confidence 6410 0111112333345778888888885
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00048 Score=52.41 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=48.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEE---cccCCc-----ccCCCCEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR---HDVTEP-----LLIEVDQI 98 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~---~d~~~~-----~~~~~d~v 98 (343)
..+.+|||+||+|-+|..+++.+...| .+|++++++..+. +.+.++.. -+++. .|+.+. .-.++|+|
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~-~~~~~lGa---~~vi~~~~~d~~~~v~~~t~g~g~d~v 101 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKA-QSALKAGA---WQVINYREEDLVERLKEITGGKKVRVV 101 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHH-HHHHHHTC---SEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHH-HHHHhcCC---eEEEECCCCCHHHHHHHHhCCCCeEEE
Confidence 457899999999999999999999999 9999998753221 22222211 12222 122111 12368999
Q ss_pred EEecC
Q 019309 99 YHLAC 103 (343)
Q Consensus 99 i~~a~ 103 (343)
+.+.+
T Consensus 102 ~d~~g 106 (179)
T d1qora2 102 YDSVG 106 (179)
T ss_dssp EECSC
T ss_pred EeCcc
Confidence 99886
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.38 E-value=0.0042 Score=47.06 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|||+||+|-+|...++.+...| .+|++++++
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~ 59 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGS 59 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecc
Confidence 357899999999999999999999999 999988874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.30 E-value=0.0046 Score=46.79 Aligned_cols=69 Identities=26% Similarity=0.296 Sum_probs=45.4
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhh--------c--CCCceEEEEcccCCcccCCCCEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKW--------I--GHPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--------~--~~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
|+|.|.| +|-.|.+++..|.++| ++|.+..|..+. +..... + ..........+-.+..+.++|+||
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g-~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii 76 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNG-NEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHC-CEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence 8999999 7999999999999999 999999874211 111111 0 011222333333344567899999
Q ss_pred Eec
Q 019309 100 HLA 102 (343)
Q Consensus 100 ~~a 102 (343)
.+.
T Consensus 77 ~av 79 (180)
T d1txga2 77 LGV 79 (180)
T ss_dssp ECS
T ss_pred ccc
Confidence 765
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.19 E-value=0.0026 Score=47.58 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++|+|+| +|..|++++..|.+.|..+|+++.|+... .+.+...+. ...+ ......++|+|||+..
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~k-a~~L~~~~~---~~~~----~~~~~~~~DliINaTp 82 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKT-GQYLAALYG---YAYI----NSLENQQADILVNVTS 82 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHH-HHHHHHHHT---CEEE----SCCTTCCCSEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHH-HHHHHHhhh---hhhh----hcccccchhhheeccc
Confidence 578999999 58999999999999995589999885321 222332222 2221 1223346899999863
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.16 E-value=0.011 Score=42.06 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=34.6
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
+.....++|+|.| +|++|-.++..|.+.| .+|+++.+...
T Consensus 30 ~~~~~~k~v~VIG-gG~iG~E~A~~l~~~g-~~Vtvie~~~~ 69 (133)
T d1q1ra2 30 RQLIADNRLVVIG-GGYIGLEVAATAIKAN-MHVTLLDTAAR 69 (133)
T ss_dssp HTCCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred HhhccCCEEEEEC-CchHHHHHHHHHHhhC-cceeeeeeccc
Confidence 4445678999999 8999999999999999 99999998643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.11 E-value=0.00098 Score=51.01 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=30.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++|.|.|+ |.+|+.++..++..| ++|++++++.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINE 37 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 67999996 999999999999999 9999999853
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0021 Score=48.17 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=46.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEccc---CCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV---TEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~vi~~a~ 103 (343)
..+.+|+|.|+ |-+|...++.+...| .+++++++.... .+..+++ .. -.++...- ......++|++|.+.|
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~G-a~~i~~~~~~~~-~~~a~~l-Ga--d~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMG-AHVVAFTTSEAK-REAAKAL-GA--DEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSGGG-HHHHHHH-TC--SEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCCEEEEecc-chHHHHHHHHhhccc-ccchhhccchhH-HHHHhcc-CC--cEEEECchhhHHHHhcCCCceeeeeee
Confidence 46789999996 889999999999999 888888774322 2222222 21 12222111 1223457999999987
Q ss_pred C
Q 019309 104 P 104 (343)
Q Consensus 104 ~ 104 (343)
.
T Consensus 103 ~ 103 (168)
T d1uufa2 103 A 103 (168)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.04 E-value=0.0089 Score=44.67 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
|.+||.|-| .|-||+.+++.|.+++..+|+++..
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 568999999 7999999999999887567666653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.00 E-value=0.033 Score=39.81 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=59.4
Q ss_pred hhhccCCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEE
Q 019309 23 SKFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIY 99 (343)
Q Consensus 23 ~~~~~~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi 99 (343)
..++..-++|.|.|+| +-.|..+++.|.+.| |+|+.+... .... .+... ..++.|- -..+|.++
T Consensus 13 ~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~----~~~i------~G~~~-~~sl~dl-p~~iD~v~ 79 (139)
T d2d59a1 13 REILTRYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK----YEEV------LGRKC-YPSVLDI-PDKIEVVD 79 (139)
T ss_dssp HHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT----CSEE------TTEEC-BSSGGGC-SSCCSEEE
T ss_pred HHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCc----cccc------CCCcc-ccccccc-CccceEEE
Confidence 3445566899999998 889999999999999 998888632 1111 12222 1222221 12488888
Q ss_pred EecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 100 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
-+.. -.....+++.|.+.|++.+.+.+
T Consensus 80 i~vp------------------~~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 80 LFVK------------------PKLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp ECSC------------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred EEeC------------------HHHHHHHHHHHHHhCCCEEEEec
Confidence 7652 12345788888888997666544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.86 E-value=0.017 Score=40.14 Aligned_cols=36 Identities=28% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
..++++|.| +|+||-.++..|.+.| .+|+++.+...
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G-~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLG-AEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcC-CceEEEEeecc
Confidence 347899999 8999999999999999 99999988643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0059 Score=46.71 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|+=++|.|+|+ |.+|+.++..+...| ++|++++++.
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTE 37 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECCh
Confidence 35579999995 999999999999999 9999999854
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.01 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
+.+|||+||+|-+|...++.....| .+|++++++.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~ 66 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRE 66 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCG
T ss_pred CCcEEEEEccccchHHHHHHHHHcC-CCeEEEecch
Confidence 4589999999999999999999999 9999998853
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0064 Score=46.07 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=48.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccch--h-hhcCCCceEEEEcccCCc-----ccCCCCEEE
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNL--K-KWIGHPRFELIRHDVTEP-----LLIEVDQIY 99 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~d~~~~-----~~~~~d~vi 99 (343)
.+++|+|+|+ |..|++++..|.+.|...++++.|......... . .............++.+. .+..+|+||
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiI 95 (182)
T d1vi2a1 17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 95 (182)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceec
Confidence 6789999995 788999999999999668999998643322111 1 111112233444555443 234789999
Q ss_pred EecC
Q 019309 100 HLAC 103 (343)
Q Consensus 100 ~~a~ 103 (343)
|+..
T Consensus 96 N~Tp 99 (182)
T d1vi2a1 96 NGTK 99 (182)
T ss_dssp ECSS
T ss_pred cccC
Confidence 9974
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.73 E-value=0.0052 Score=45.52 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=43.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||-|.| .|.+|+.+++.|+++| ++|++++|+. +....+.. ..... .+-......++|+||-|.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G-~~V~~~d~~~----~~~~~~~~-~~~~~--~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG-YSLVVSDRNP----EAIADVIA-AGAET--ASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCH----HHHHHHHH-TTCEE--CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC-CeEEEEeCCc----chhHHHHH-hhhhh--cccHHHHHhCCCeEEEEc
Confidence 7899998 7999999999999999 9999998842 22222221 22221 121222345799999876
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.01 Score=52.82 Aligned_cols=105 Identities=8% Similarity=0.093 Sum_probs=67.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc----------c------------chhhhcCCCceEEEEc
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK----------D------------NLKKWIGHPRFELIRH 85 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------~------------~~~~~~~~~~~~~~~~ 85 (343)
.+.+|+|.|+ |-+|.++++.|...|-..+++++...-... + .+..+.+.-.++.+..
T Consensus 24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~ 102 (529)
T d1yova1 24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE 102 (529)
T ss_dssp HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 4579999996 669999999999999668888865321110 0 0111111123444554
Q ss_pred ccCC------cccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccCC
Q 019309 86 DVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 150 (343)
Q Consensus 86 d~~~------~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~~ 150 (343)
+..+ ..+.++|+||.+.. +......+-++|++.++.||+.++.+.||.
T Consensus 103 ~~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~ 156 (529)
T d1yova1 103 SPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVGY 156 (529)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTEEE
T ss_pred CchhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeccCCEEE
Confidence 4332 12446899997652 222334678899999999999998887763
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.54 E-value=0.0081 Score=45.32 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.|||.|+|+ |.+|..++..|.++| ++|.+++|.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G-~~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDID 33 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCC-CEEEEEECC
Confidence 389999995 999999999999999 999999984
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.47 E-value=0.0079 Score=44.54 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
++|.+.| .|.+|+.+++.|+++| |+|.+++|+. +........ .. ...+-.......+|+|+-|.
T Consensus 2 ~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~~----~~~~~~~~~-~~--~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 2 KQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQ----SAVDGLVAA-GA--SAARSARDAVQGADVVISML 65 (162)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSH----HHHHHHHHT-TC--EECSSHHHHHTSCSEEEECC
T ss_pred CEEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECch----hhhhhhhhh-hc--cccchhhhhccccCeeeecc
Confidence 6799998 8999999999999999 9999999842 222222211 11 11222223455789999876
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.41 E-value=0.0068 Score=45.69 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
|||-|.| .|.+|..+++.|+++| |+|++++|..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEEEECCH
Confidence 7899998 9999999999999999 9999999843
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.41 E-value=0.16 Score=34.83 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=53.1
Q ss_pred CEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCC
Q 019309 30 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 106 (343)
Q Consensus 30 ~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~ 106 (343)
|+|.|.|+| +-.|..+++.|++.| |+|+.+... .+.. .++..+. ++.|.. ..+|.++-+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~----~~~i------~G~~~y~-sl~~lp-~~~D~vvi~vp--- 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPN----YDEI------EGLKCYR-SVRELP-KDVDVIVFVVP--- 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT----CSEE------TTEECBS-SGGGSC-TTCCEEEECSC---
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccc----cccc------cCccccc-cchhcc-ccceEEEEEeC---
Confidence 689999988 789999999999999 998887532 1111 1222221 222211 25798886652
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Q 019309 107 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 142 (343)
Q Consensus 107 ~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~ 142 (343)
-..+..+++.|.+.|++.+++
T Consensus 66 ---------------~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 66 ---------------PKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp ---------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred ---------------HHHHHHHHHHHHhcCCceEEe
Confidence 122456788888889976654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.33 E-value=0.015 Score=44.50 Aligned_cols=31 Identities=39% Similarity=0.587 Sum_probs=26.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|||.|.| .||+|..++..| ++| ++|++++-+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g-~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQ-NEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTT-SEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCC-CcEEEEECC
Confidence 8999997 899999998755 678 999999864
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.31 E-value=0.0016 Score=49.79 Aligned_cols=33 Identities=21% Similarity=0.080 Sum_probs=27.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
.+|||+||+|-+|+..++.....|...|++++.
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~ 64 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 64 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccc
Confidence 679999999999999999999999334554544
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.038 Score=43.78 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhc--------------------CCCceEEEEcc-
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWI--------------------GHPRFELIRHD- 86 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~~~d- 86 (343)
.+.+|+|.| .|-+|++++..|...|-.++++++...-....-.++.+ -.+.+++...+
T Consensus 29 ~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 29 KDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp HHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 567999999 67799999999999996688888753211111000000 01233333222
Q ss_pred -cCCc----ccCCCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCcccC
Q 019309 87 -VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 149 (343)
Q Consensus 87 -~~~~----~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~v~~ 149 (343)
+... .....|+++.+.. |...-..+-++|.++++.+|+-+....+|
T Consensus 108 ~~~~~~~~~~~~~~divid~~d-----------------~~~~~~~in~~~~~~~ip~i~g~~~~~~g 158 (247)
T d1jw9b_ 108 LLDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKVPLVSGAAIRMEG 158 (247)
T ss_dssp CCCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEEEBTEE
T ss_pred hhhhccccccccccceeeeccc-----------------hhhhhhhHHHHHHHhCCCccccccccccc
Confidence 2211 2236888887652 12223456778888998888866655444
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.25 E-value=0.017 Score=40.45 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..++|+|.| .|++|-.++..|.+.| .+|+++.+..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g-~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAG-KKVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccc-eEEEEEEecC
Confidence 467999998 8999999999999999 9999998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.032 Score=41.39 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|+|+|+ |-+|...++.+...|..+|++.++.
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCC
Confidence 35679999986 9999999999999994478888764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0081 Score=44.79 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=47.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEc-cc---CCcccCCCCEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRH-DV---TEPLLIEVDQIYHLA 102 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~---~~~~~~~~d~vi~~a 102 (343)
..+.+|+|+|+ |-+|...++.+...| .+|++++++..+ .+...++-. . .++.. +. ......++|.++.+.
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~~k-~~~a~~lGa-~--~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSRK-REDAMKMGA-D--HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSSTT-HHHHHHHTC-S--EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhcc-ccccccccchhH-HHHhhccCC-c--EEeeccchHHHHHhhhcccceEEEEe
Confidence 46789999996 999999999999999 899999885432 223333211 1 22221 11 112334689999987
Q ss_pred CCC
Q 019309 103 CPA 105 (343)
Q Consensus 103 ~~~ 105 (343)
+..
T Consensus 100 ~~~ 102 (168)
T d1piwa2 100 SSL 102 (168)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.19 E-value=0.02 Score=42.48 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+.+|+|+|++|-+|...++.+...|...|++++++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~ 62 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR 62 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence 567999999999999999999999995578888764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.16 E-value=0.0058 Score=46.62 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++||.|+| +|..|.+++..|.++| ++|+++.|+.
T Consensus 7 m~KI~ViG-aG~wGtAlA~~La~~g-~~V~l~~r~~ 40 (189)
T d1n1ea2 7 LNKAVVFG-SGAFGTALAMVLSKKC-REVCVWHMNE 40 (189)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHTTE-EEEEEECSCH
T ss_pred eceEEEEC-CCHHHHHHHHHHHHcC-CeEEEEEecH
Confidence 35799999 8999999999999999 9999999853
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.13 E-value=0.017 Score=40.01 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++++|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G-~~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFG-TKVTILEGAG 55 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCeEEEEC-CCccceeeeeeecccc-cEEEEEEecc
Confidence 47899999 8999999999999999 9999998743
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.10 E-value=0.022 Score=38.70 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=28.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
-.+|+|+|.| +|.-|.-++..|.+.. .+++.+.|.
T Consensus 30 f~gK~VlVVG-~g~Sa~dia~~l~~~a-k~v~~~~~r 64 (107)
T d2gv8a2 30 FVGESVLVVG-GASSANDLVRHLTPVA-KHPIYQSLL 64 (107)
T ss_dssp GTTCCEEEEC-SSHHHHHHHHHHTTTS-CSSEEEECT
T ss_pred cCCCeEEEEC-CCCCHHHHHHHHHHhc-CEEEEEEec
Confidence 3789999999 7899999999999888 555555443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.029 Score=42.14 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+.+.+|||+|+ |-+|...++.+...|..+|++++++
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~ 62 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGS 62 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccc
Confidence 35789999996 8899999999999993378888874
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.023 Score=41.71 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
.+|+|+|.|-+..+|+.|+..|.++| ..|+.+..
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~g-atVt~~h~ 69 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHR 69 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECS
T ss_pred ccceEEEEeccccccHHHHHHHHHhh-cccccccc
Confidence 68999999999999999999999999 99998865
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.019 Score=40.10 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=30.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.++++|.| .|+||-.++..|.+.| .+|+++.+.
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG-~~Vtii~~~ 55 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLG-SKVTVVEFQ 55 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhC-cceeEEEec
Confidence 47899999 8999999999999999 999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.92 E-value=0.044 Score=40.81 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
...+.+|+|.|+ |-+|...++.+...|..+|++++++
T Consensus 25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~ 61 (174)
T d1p0fa2 25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTH 61 (174)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCCh
Confidence 346789999995 8999999999999995578888764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.021 Score=39.52 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++|+|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G-~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLG-AKTHLFEMFD 54 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccc-cEEEEEeecc
Confidence 37899999 8999999999999999 9999998853
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.88 E-value=0.019 Score=39.74 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++|+|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g-~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLG-IDSYIFARGN 55 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhcc-ccceeeehhc
Confidence 47899999 8999999999999999 9999999853
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.84 E-value=0.014 Score=42.70 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=42.8
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
|||.+.| +|-+|+++++.|++.+ +++++..|+.+.. +.+.+.. ++.+.. |. +....++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~-~~i~v~~r~~~~~-~~l~~~~---g~~~~~-~~-~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP-HELIISGSSLERS-KEIAEQL---ALPYAM-SH-QDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS-CEEEEECSSHHHH-HHHHHHH---TCCBCS-SH-HHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC-CeEEEEcChHHhH-Hhhcccc---ceeeec-hh-hhhhhccceeeeec
Confidence 7899998 9999999999999999 9999998753221 1222221 222211 11 12345799999775
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.83 E-value=0.016 Score=45.92 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=31.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
...+||+|+| .|..|-..+..|.++| ++|+++.|.
T Consensus 4 ~~~~kVvVIG-aGiaGl~~A~~L~~~G-~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLG-SGVIGLSSALILARKG-YSVHILARD 38 (268)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCcEEEEC-ccHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 3567999999 8999999999999999 999999984
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.07 Score=45.83 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.||||.|+ |-+|.++++.|...|-.++++++..
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35689999996 5599999999999995588888763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.70 E-value=0.013 Score=44.48 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CCCEEEE-EcCchhHHHHHHHHHHhcCCCeEEEEecCCCC
Q 019309 28 SNMRILV-TGGAGFIGSHLVDKLMENEKNEVIVADNYFTG 66 (343)
Q Consensus 28 ~~~~ilI-tGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~ 66 (343)
.+.+++| .||+|-+|...++.....| .+|++++|....
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~G-a~vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcC-CeEEEEEecccc
Confidence 4566777 5999999999999999999 999999876544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.028 Score=41.17 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=50.7
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.++..+|+++|+| .|.+|+.+++.|...| -+|+++.+. ....+.... .+++... .+..+...|+||-+.|
T Consensus 19 ~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G-~~V~v~e~d---p~~al~A~~--dG~~v~~---~~~a~~~adivvtaTG 88 (163)
T d1li4a1 19 DVMIAGKVAVVAG-YGDVGKGCAQALRGFG-ARVIITEID---PINALQAAM--EGYEVTT---MDEACQEGNIFVTTTG 88 (163)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC---HHHHHHHHH--TTCEECC---HHHHTTTCSEEEECSS
T ss_pred CceecCCEEEEec-cccccHHHHHHHHhCC-CeeEeeecc---cchhHHhhc--CceEeee---hhhhhhhccEEEecCC
Confidence 3456899999999 9999999999999999 999999863 222333332 2344332 2344556788888776
Q ss_pred CC
Q 019309 104 PA 105 (343)
Q Consensus 104 ~~ 105 (343)
..
T Consensus 89 n~ 90 (163)
T d1li4a1 89 CI 90 (163)
T ss_dssp CS
T ss_pred Cc
Confidence 43
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.57 E-value=0.0065 Score=45.64 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=43.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-----c--cCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-----L--LIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~--~~~~d~vi 99 (343)
..+.+|+|.|+ |-+|...++.+...|...|++.+++. .+.+..+++ . ..+++..+-.+. . -.++|+||
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-~k~~~a~~~-G--a~~~i~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-SRLELAKQL-G--ATHVINSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-HHHHHHHHH-T--CSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-HHHHHHHHc-C--CeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence 36789999997 99999999999999934455555422 122222222 1 223333222111 1 12699999
Q ss_pred EecC
Q 019309 100 HLAC 103 (343)
Q Consensus 100 ~~a~ 103 (343)
.|.|
T Consensus 102 d~~G 105 (174)
T d1f8fa2 102 ESTG 105 (174)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9986
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.022 Score=36.07 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=29.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|.|+| +|.+|+.++..-.+.| ++|++++..
T Consensus 2 k~vgIlG-~GQLgrMl~~Aa~~LG-~~v~vldp~ 33 (78)
T d3etja2 2 KQVCVLG-NGQLGRMLRQAGEPLG-IAVWPVGLD 33 (78)
T ss_dssp EEEEEEB-CSHHHHHHHHHHGGGT-EEEEEECTT
T ss_pred CEEEEEc-CCHHHHHHHHHHHHcC-CEEEEEcCC
Confidence 6899999 8999999999999999 999999853
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.027 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++++|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G-~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALG-SKTSLMIRHD 55 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCC-cEEEEEeecc
Confidence 37899999 8999999999999999 9999999854
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.48 E-value=0.025 Score=39.43 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
...++++|.| .|++|-.++..|.+.| .+|+++.|.
T Consensus 30 ~~~~~vvIiG-gG~iG~E~A~~l~~~g-~~Vtlv~~~ 64 (122)
T d1xhca2 30 ENSGEAIIIG-GGFIGLELAGNLAEAG-YHVKLIHRG 64 (122)
T ss_dssp HHHSEEEEEE-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred hcCCcEEEEC-CcHHHHHHHHHhhccc-ceEEEEecc
Confidence 3458999999 8999999999999999 999999874
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.46 E-value=0.031 Score=41.61 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred CCEEEEEcCchhHHHH--HHHHHHhcC---CCeEEEEecCCCCCccch---hhh--cCCCceEEEEcccCCcccCCCCEE
Q 019309 29 NMRILVTGGAGFIGSH--LVDKLMENE---KNEVIVADNYFTGSKDNL---KKW--IGHPRFELIRHDVTEPLLIEVDQI 98 (343)
Q Consensus 29 ~~~ilItGatG~iG~~--l~~~L~~~g---~~~V~~~~r~~~~~~~~~---~~~--~~~~~~~~~~~d~~~~~~~~~d~v 98 (343)
+|||.|.|| |.+|.. ++..|+... ..+++.++++........ ... ......++...+-.+.++.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 499999996 888764 344455432 158999987432111000 000 012345555444444567899999
Q ss_pred EEecCCCCccccccChHH------------------------HHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 99 YHLACPASPIFYKYNPVK------------------------TIKTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 99 i~~a~~~~~~~~~~~~~~------------------------~~~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
++.++.........+... ....|+.-...+++..++..- .+|.+|
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 999864321111000000 012477778888888888765 455544
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.36 E-value=0.011 Score=44.45 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=43.2
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhh----hcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKK----WIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.+++|+|+| +|..+++++..|.+.+ +|+++.|+.... +.+.. .........+..+-.+......|.+||+..
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~--~i~I~nR~~~ka-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp 92 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN--NIIIANRTVEKA-EALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 92 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS--EEEEECSSHHHH-HHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc--ceeeehhhhhHH-HHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence 679999999 5778999999986654 899998853221 11111 111111112222222334457899999864
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.34 E-value=0.029 Score=38.63 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++++|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g-~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLG-AQVSVVEARE 54 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcc-cceEEEeeec
Confidence 37899998 8999999999999999 9999998743
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.25 E-value=0.073 Score=39.55 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=45.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc---------ccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP---------LLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~d~ 97 (343)
..+.+|+|+| .|-||...++.+...|...|++.+++. .+.+..++ +. .-.++...-.+. ...++|+
T Consensus 27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-~r~~~a~~-~G--a~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDING-EKFPKAKA-LG--ATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCG-GGHHHHHH-TT--CSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccch-HHHHHHHH-hC--CCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 4678999998 599999999999999944677777632 12222222 21 222332222221 1247999
Q ss_pred EEEecCC
Q 019309 98 IYHLACP 104 (343)
Q Consensus 98 vi~~a~~ 104 (343)
+|.|.|.
T Consensus 102 vie~~G~ 108 (174)
T d1e3ia2 102 SLDCAGT 108 (174)
T ss_dssp EEESSCC
T ss_pred EEEeccc
Confidence 9999973
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.023 Score=41.26 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=31.0
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+++|||+|| |.+|..-++.|++.| .+|+++..
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G-A~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG-CKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT-CEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeC
Confidence 57899999995 999999999999999 99999864
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.13 E-value=0.17 Score=37.70 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..+++|.|.| .|-||+.+++.|..-| .+|++++|..
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d~~~ 75 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG-AQVRGFSRTP 75 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred ccCceEEEec-cccccccceeeeeccc-cccccccccc
Confidence 3689999999 8999999999999999 9999999864
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.052 Score=40.05 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.||+|+|.|-|..+|+.|+..|.++| ..|+.+...
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~ 72 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSK 72 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT
T ss_pred ccceEEEEecCCccchHHHHHHHhcc-CceEEEecc
Confidence 78999999999999999999999999 999998753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.03 E-value=0.085 Score=39.15 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=44.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEE-cccCCc--------ccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIR-HDVTEP--------LLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~~--------~~~~~d~ 97 (343)
..+.+|+|.|+. -+|...+..+...|..+|++++++..+ .+...+. .....+. .+..+. ...++|+
T Consensus 27 k~GdtVlV~GaG-G~G~~~~~~~~~~g~~~Vi~~~~~~~k-~~~a~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 27 TQGSTCAVFGLG-GVGLSVIMGCKAAGAARIIGVDINKDK-FAKAKEV---GATECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp CTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHcCCceEEeecCcHHH-HHHHHHh---CCeeEEecCCchhHHHHHHHHHhcCCCCE
Confidence 467899999995 589999999999985678888764322 2222222 1122221 222221 1237999
Q ss_pred EEEecCC
Q 019309 98 IYHLACP 104 (343)
Q Consensus 98 vi~~a~~ 104 (343)
+|.+.|.
T Consensus 102 vid~~G~ 108 (176)
T d2jhfa2 102 SFEVIGR 108 (176)
T ss_dssp EEECSCC
T ss_pred EEecCCc
Confidence 9999863
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.02 E-value=0.027 Score=42.09 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
+.+|-|.| .|.+|..+++.|+++| |+|++++|+.
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHG-FVVCAFNRTV 35 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSST
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCC-CeEEEEcCCH
Confidence 36799999 7999999999999999 9999999854
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.00 E-value=0.032 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=29.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
++++|.| .|+||-.++..|.+.| .+|+++.|.
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG-~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIG-LDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcC-CeEEEEEec
Confidence 6899999 8999999999999999 999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.81 E-value=0.047 Score=40.66 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|+|.|+ |-+|...++.+...|..+|++++++
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccch
Confidence 46789999985 9999999999999994578888763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.74 E-value=0.053 Score=37.50 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=31.5
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.+++|+|.| +|++|-.++..|.+.| .+|+++.|..
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g-~~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATG-RRTVMLVRTE 55 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcc-hhheEeeccc
Confidence 358999999 8999999999999999 9999998854
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=93.63 E-value=0.23 Score=35.00 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred hhccCCCEEEEEcCc---hhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEE
Q 019309 24 KFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYH 100 (343)
Q Consensus 24 ~~~~~~~~ilItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~ 100 (343)
.+...-++|.|.||| +-.|..+++.|++.| +.++.+.-.... ... .+...+ .++.+.. ..+|.++-
T Consensus 8 ~~L~~pksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~~~~--~~i------~g~~~~-~~l~~i~-~~iD~v~v 76 (136)
T d1iuka_ 8 AYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPRFQG--EEL------FGEEAV-ASLLDLK-EPVDILDV 76 (136)
T ss_dssp HHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGGGTT--SEE------TTEECB-SSGGGCC-SCCSEEEE
T ss_pred HHHhCCCeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEecccc--cee------eceecc-cchhhcc-CCCceEEE
Confidence 344455899999998 678999999999999 998887532100 011 111111 1222111 25788887
Q ss_pred ecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeC
Q 019309 101 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 144 (343)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS 144 (343)
+... .....+++.|.+.|++.+++.+
T Consensus 77 ~~p~------------------~~v~~~v~~~~~~g~k~i~~q~ 102 (136)
T d1iuka_ 77 FRPP------------------SALMDHLPEVLALRPGLVWLQS 102 (136)
T ss_dssp CSCH------------------HHHTTTHHHHHHHCCSCEEECT
T ss_pred eccH------------------HHHHHHHHHHHhhCCCeEEEec
Confidence 7521 1234577778888887666554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.58 E-value=0.049 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..++++|.| .|+||-.++..|.+.| .+|+++.+..
T Consensus 25 ~p~~vvIiG-gG~IG~E~A~~~~~~G-~~Vtive~~~ 59 (125)
T d1ojta2 25 VPGKLLIIG-GGIIGLEMGTVYSTLG-SRLDVVEMMD 59 (125)
T ss_dssp CCSEEEEES-CSHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred cCCeEEEEC-CCHHHHHHHHHhhcCC-CEEEEEEeec
Confidence 347999999 8999999999999999 9999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.58 E-value=0.084 Score=39.05 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=44.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-------ccCCCCEEE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-------LLIEVDQIY 99 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~vi 99 (343)
..+.+|+|.|+ |.+|...++.+...|...|+++++.. .+.+..++. ....++..+-.+. .-.++|+||
T Consensus 31 ~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~-~k~~~~~~~---ga~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE-EKLKLAERL---GADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH-HHHHHHHHT---TCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchh-HHHHHHhhc---ccceeecCcccHHHHHHHhhCCCCceEEE
Confidence 46789999985 99999999999999855667666532 111222222 2223333221111 123699999
Q ss_pred EecCC
Q 019309 100 HLACP 104 (343)
Q Consensus 100 ~~a~~ 104 (343)
.++|.
T Consensus 106 d~~g~ 110 (172)
T d1h2ba2 106 DFVGS 110 (172)
T ss_dssp ESSCC
T ss_pred EecCc
Confidence 99863
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.55 E-value=0.04 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..++++|.| .|++|-.++..|.+.| .+|+++.|..
T Consensus 24 ~p~~~viiG-~G~iglE~A~~~~~~G-~~Vtvi~~~~ 58 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMGSVWGRIG-SEVTVVEFAS 58 (123)
T ss_dssp CCSEEEESC-CSHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred cCCeEEEEc-cchHHHHHHHHHHhcC-CeEEEEEEcc
Confidence 447999999 8999999999999999 9999998854
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.43 E-value=0.1 Score=38.66 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=42.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEccc-CCc--------ccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV-TEP--------LLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~-~~~--------~~~~~d~ 97 (343)
..+.+|+|.|+. -+|...++.+...|...|++.+++ +.+.+..+++ . .-.++..+- .+. .-.++|+
T Consensus 27 ~~G~tVlI~GaG-GvG~~aiq~ak~~G~~~vi~~~~~-~~k~~~ak~l-G--a~~~i~~~~~~~~~~~~~~~~~~~g~D~ 101 (176)
T d2fzwa2 27 EPGSVCAVFGLG-GVGLAVIMGCKVAGASRIIGVDIN-KDKFARAKEF-G--ATECINPQDFSKPIQEVLIEMTDGGVDY 101 (176)
T ss_dssp CTTCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECSC-GGGHHHHHHH-T--CSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEecch-hHHHHHHHHHHHHhcCceEEEccc-HHHHHHHHHh-C--CcEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence 467899999985 589999999999994456655542 2222223332 2 122222211 111 1237999
Q ss_pred EEEecC
Q 019309 98 IYHLAC 103 (343)
Q Consensus 98 vi~~a~ 103 (343)
||.+.|
T Consensus 102 vid~~G 107 (176)
T d2fzwa2 102 SFECIG 107 (176)
T ss_dssp EEECSC
T ss_pred eeecCC
Confidence 999986
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.29 E-value=0.065 Score=40.83 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=45.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++|.|-| .|-+|+++++.|.+.| .+|++.+.. ...+..... .+.+.+ +..+....+||+++=||.
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~G-akvvv~d~d----~~~~~~~~~-~g~~~~--~~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAG-AQLLVADTD----TERVAHAVA-LGHTAV--ALEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC----HHHHHHHHH-TTCEEC--CGGGGGGCCCSEEEECSC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEecch----HHHHHHHHh-hccccc--Cccccccccceeeecccc
Confidence 3789999998 9999999999999999 999988752 222222111 122322 222333447999998874
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.05 E-value=0.1 Score=38.48 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=57.7
Q ss_pred CCEEEEEcC-chhHHHHHHHHHHhcCC---CeEEEEecCCCCCccchhhh-----c--CCCceEEEEcccCCcccCCCCE
Q 019309 29 NMRILVTGG-AGFIGSHLVDKLMENEK---NEVIVADNYFTGSKDNLKKW-----I--GHPRFELIRHDVTEPLLIEVDQ 97 (343)
Q Consensus 29 ~~~ilItGa-tG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~~~~~d~~~~~~~~~d~ 97 (343)
+|||.|.|| +.+.+..++..+..... .++..++............. . .....++....-...++.+.|+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 479999996 44555666665555431 37888876432111111111 0 0122333222212235678999
Q ss_pred EEEecCCCCccccccC----------------h--HHHHHHHHHHHHHHHHHHHHcCC
Q 019309 98 IYHLACPASPIFYKYN----------------P--VKTIKTNVIGTLNMLGLAKRVGA 137 (343)
Q Consensus 98 vi~~a~~~~~~~~~~~----------------~--~~~~~~nv~~~~~l~~~a~~~~~ 137 (343)
||..++.........+ + ......|+.....+++...+..-
T Consensus 81 Vv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p 138 (169)
T d1s6ya1 81 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP 138 (169)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC
Confidence 9999975431111000 0 11234678888888888888766
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.05 E-value=0.062 Score=44.21 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=30.5
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+|+|+|+| +|+-|-..|..|.++| ++|+++.+.
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G-~~V~viEk~ 34 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKG-HQVHIIDQR 34 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCC-CCEEEEECC
Confidence 58999999 8999999999999999 999999864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.93 E-value=0.052 Score=38.08 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=44.7
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcc------cCCCCEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 102 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~d~vi~~a 102 (343)
|+|+|+| -|-+|+.+++.|. + +.|.++.... +.... ....++.++.||.+++. +.+++.++-+.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~-~~i~vi~~d~----~~~~~-~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--G-SEVFVLAEDE----NVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--G-GGEEEEESCT----THHHH-HHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHc--C-CCCEEEEcch----HHHHH-HHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 5688998 5888999999994 4 5666666532 11222 22358899999999874 34788998665
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=92.78 E-value=0.19 Score=37.88 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFT 65 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 65 (343)
.+++|.|.| .|-||+.+++.|..-| .+|+++++...
T Consensus 48 ~gktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 83 (193)
T d1mx3a1 48 RGETLGIIG-LGRVGQAVALRAKAFG-FNVLFYDPYLS 83 (193)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTSC
T ss_pred eCceEEEec-cccccccceeeeeccc-cceeeccCccc
Confidence 678999998 9999999999999999 99999988543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.74 E-value=0.14 Score=38.80 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+++|.|.| .|-||+.+++.|..-| .+|+++++.
T Consensus 42 ~gk~vgIiG-~G~IG~~va~~l~~fg-~~V~~~d~~ 75 (197)
T d1j4aa1 42 RDQVVGVVG-TGHIGQVFMQIMEGFG-AKVITYDIF 75 (197)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cCCeEEEec-ccccchhHHHhHhhhc-ccccccCcc
Confidence 579999999 9999999999999999 999999874
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.73 E-value=0.11 Score=37.67 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=51.3
Q ss_pred hhccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 24 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 24 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
.++..+|+++|.| -|++|+.+++.|...| .+|+++...+ -..+.... .++++... +.++...|++|-+.|
T Consensus 18 ~~~laGk~vvV~G-YG~vGrG~A~~~rg~G-a~V~V~E~DP---i~alqA~m--dGf~v~~~---~~a~~~aDi~vTaTG 87 (163)
T d1v8ba1 18 DFLISGKIVVICG-YGDVGKGCASSMKGLG-ARVYITEIDP---ICAIQAVM--EGFNVVTL---DEIVDKGDFFITCTG 87 (163)
T ss_dssp CCCCTTSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSCH---HHHHHHHT--TTCEECCH---HHHTTTCSEEEECCS
T ss_pred CceecCCEEEEec-ccccchhHHHHHHhCC-CEEEEEecCc---hhhHHHHh--cCCccCch---hHccccCcEEEEcCC
Confidence 4556899999999 9999999999999999 9999987632 22233332 35555433 234556788887776
Q ss_pred CCC
Q 019309 104 PAS 106 (343)
Q Consensus 104 ~~~ 106 (343)
..+
T Consensus 88 n~~ 90 (163)
T d1v8ba1 88 NVD 90 (163)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.73 E-value=0.14 Score=38.15 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=27.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
-||.|-| .|.||+.+++.|.+++..+|+++..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3799999 8999999999999987567777754
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.69 E-value=0.072 Score=39.36 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 64 (343)
.+|||+|.| .|+.|-.++..|.+.+. .+|+++.+..
T Consensus 1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 379999999 89999999999999983 3788887643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.68 E-value=0.12 Score=38.67 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=40.8
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe-cCCCCCccchhhhcCCC-ceEEEEcccCCc-ccCCCCEEEEec
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD-NYFTGSKDNLKKWIGHP-RFELIRHDVTEP-LLIEVDQIYHLA 102 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-~~~~~d~vi~~a 102 (343)
++||.|.| .|.+|+..++.|...+..+|+++. ++. .+..........+ ..+ +..|+.+- ...++|+|+-+.
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~iD~v~I~t 74 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSL-EKAKAFATANNYPESTK-IHGSYESLLEDPEIDALYVPL 74 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSH-HHHHHHHHHTTCCTTCE-EESSHHHHHHCTTCCEEEECC
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCc-cccccchhcccccccee-ecCcHHHhhhccccceeeecc
Confidence 47899999 688999999999887546777654 321 1112222222211 222 23343322 234689999654
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=92.67 E-value=0.095 Score=40.60 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=22.0
Q ss_pred EEEEEcCchhHHH-HHHHHHHhcCCCeEEEEe
Q 019309 31 RILVTGGAGFIGS-HLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 31 ~ilItGatG~iG~-~l~~~L~~~g~~~V~~~~ 61 (343)
+|.|.| .|.+|+ +++..|......+|+++.
T Consensus 35 riaiIG-~G~~~~~~~~~~~~~~~~~~ivav~ 65 (221)
T d1h6da1 35 GYAIVG-LGKYALNQILPGFAGCQHSRIEALV 65 (221)
T ss_dssp EEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEE
T ss_pred EEEEEc-CcHHHHHHHHHHHHhCCCceEEEEe
Confidence 899999 689996 566777666436777554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.66 E-value=0.15 Score=38.69 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=32.1
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.+++|.|.| .|-||+.+++.|..-| .+|+++++..
T Consensus 44 ~~ktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~ 78 (199)
T d1dxya1 44 GQQTVGVMG-TGHIGQVAIKLFKGFG-AKVIAYDPYP 78 (199)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred cceeeeeee-cccccccccccccccc-eeeeccCCcc
Confidence 578999999 9999999999999999 9999999854
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.65 E-value=0.096 Score=38.50 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=47.5
Q ss_pred CEEEEEcCchhHHHH-HHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCcc
Q 019309 30 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 108 (343)
Q Consensus 30 ~~ilItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~~ 108 (343)
|||.|.| .|.+|+. .+..|.+.+..++.+++++. .....+.+.. ++.....|..+..-.++|+|+-+..+..
T Consensus 2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~-~~~~~~~~~~---~~~~~~~~~~~ll~~~iD~V~I~tp~~~-- 74 (167)
T d1xeaa1 2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNP-KVLGTLATRY---RVSATCTDYRDVLQYGVDAVMIHAATDV-- 74 (167)
T ss_dssp EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCH-HHHHHHHHHT---TCCCCCSSTTGGGGGCCSEEEECSCGGG--
T ss_pred eEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCH-HHHHHHHHhc---ccccccccHHHhcccccceecccccccc--
Confidence 7899999 6778865 56666666535776665432 1112222222 2222233443322236899886652111
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 019309 109 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140 (343)
Q Consensus 109 ~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i 140 (343)
...++..|.+.|.+++
T Consensus 75 ----------------H~~~~~~al~~gk~V~ 90 (167)
T d1xeaa1 75 ----------------HSTLAAFFLHLGIPTF 90 (167)
T ss_dssp ----------------HHHHHHHHHHTTCCEE
T ss_pred ----------------cccccccccccccccc
Confidence 2346667777887654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.063 Score=38.74 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r 62 (343)
|+|.|+|+||-||...++-+.+.. .++|.+++-
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 579999999999999999888875 367777754
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=92.56 E-value=0.16 Score=37.44 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
++|.|-| -|-||+.+++.|..++..+|+++..
T Consensus 2 ~~VgING-fGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 2 KAVAING-YGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred eEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence 5899998 8999999999999888556666653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.46 E-value=0.22 Score=34.62 Aligned_cols=94 Identities=14% Similarity=0.011 Sum_probs=56.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCccc-CCCCEEEEecCCCCc
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPASP 107 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~vi~~a~~~~~ 107 (343)
+.+|+|.| +|.+|+.|++++.....++++++....+.. ....+ .++.++..|-..... ..++..+-+..
T Consensus 3 ~~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k---~G~~I--~Gi~V~~~~~l~~~~~~~i~iai~~i~---- 72 (126)
T d2dt5a2 3 KWGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEK---VGRPV--RGGVIEHVDLLPQRVPGRIEIALLTVP---- 72 (126)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTT---TTCEE--TTEEEEEGGGHHHHSTTTCCEEEECSC----
T ss_pred CceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHh---cCCEE--CCEEEecHHHHHHHHhhcccEEEEeCC----
Confidence 35899999 899999999987655447877776532221 11111 366666555432222 24566555441
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCe-EEEEeCCc
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 146 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r-~i~~SS~~ 146 (343)
......+++.|.++|++ +.-++...
T Consensus 73 --------------~~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 73 --------------REAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp --------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred --------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence 01134688899999995 66655543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.30 E-value=0.093 Score=41.43 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..+||+|.| .|.-|..++..|.++| ++|+++.|..
T Consensus 3 ~~~kV~IiG-aG~aGl~~A~~L~~~G-~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVG-GSISGLTAALMLRDAG-VDVDVYERSP 37 (265)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCCcEEEEC-cCHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence 348999999 8999999999999999 9999998753
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.28 E-value=0.094 Score=40.76 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=46.7
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
..+++|+|-| .|-+|+++++.|.+.| .+|++.+.. ...+.......+.+.+ +..+.....||+++=||-
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~G-akvv~~d~~----~~~~~~~~~~~g~~~~--~~~~~~~~~cDIl~PcA~ 105 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEG-AKLVVTDVN----KAAVSAAVAEEGADAV--APNAIYGVTCDIFAPCAL 105 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC----HHHHHHHHHHHCCEEC--CGGGTTTCCCSEEEECSC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEeeccc----HHHHHHHHHhcCCccc--CCcccccccccEeccccc
Confidence 4789999999 9999999999999999 999987652 2222222221223322 222223447999999985
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.21 Score=37.14 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|+|.| +|.-|-.-+..|.++| |+|+++.+.
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G-~~Vtl~E~~ 75 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARG-HQVTLFDAH 75 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhc-cceEEEecc
Confidence 3568999999 8999999999999999 999999874
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.08 E-value=0.25 Score=36.29 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=43.4
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc---------ccCCCCE
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP---------LLIEVDQ 97 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~d~ 97 (343)
..+.+|+|.|+.| +|...+..+...+..+|+++++... +.+...++ .--.++..+-.+. ...++|+
T Consensus 27 k~g~~VlI~G~Gg-~g~~~~~~~~~~g~~~Vi~~~~~~~-rl~~a~~~---GAd~~in~~~~~~~~~~~~~~~~~~G~d~ 101 (175)
T d1cdoa2 27 EPGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPD-KFEKAKVF---GATDFVNPNDHSEPISQVLSKMTNGGVDF 101 (175)
T ss_dssp CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGG-GHHHHHHT---TCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEEecCC-ccchHHHHHHHHhhchheeecchHH-HHHHHHHc---CCcEEEcCCCcchhHHHHHHhhccCCcce
Confidence 4678999999755 7777777888888567888876432 22222222 1223333221111 1237999
Q ss_pred EEEecCC
Q 019309 98 IYHLACP 104 (343)
Q Consensus 98 vi~~a~~ 104 (343)
+|.+.|.
T Consensus 102 vid~~G~ 108 (175)
T d1cdoa2 102 SLECVGN 108 (175)
T ss_dssp EEECSCC
T ss_pred eeeecCC
Confidence 9999873
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.06 E-value=0.1 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.3
Q ss_pred CCCEEEEE-cCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVT-GGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilIt-GatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+++++|. .+.||+|..++..|.+.| .+|+++.+.
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G-~~Vtlv~~~ 73 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAG-HEVTIVSGV 73 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTT-CEEEEEESS
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcC-CeEEEEecC
Confidence 34566766 357999999999999999 999999874
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.03 E-value=0.08 Score=39.78 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCC-eEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~-~V~~~~r~ 63 (343)
++||+|.| +|..|-..+..|.++| + +|+++.|.
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G-~~~V~v~E~~ 37 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLG-YSDITIFEKQ 37 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTT-CCCEEEEESS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCC-CCeEEEEEec
Confidence 58999999 8999999999999999 6 59998874
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.91 E-value=0.26 Score=36.85 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=42.5
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCc------cchhhhcCCCceEEEEcccCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSK------DNLKKWIGHPRFELIRHDVTE 89 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~d~~~ 89 (343)
..+++|.|.| .|.||+.+++.|..-| .+|+.+++...... ..+.+.+...++-.+.+.+++
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~ 108 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLG-MYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENP 108 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSST
T ss_pred ccceEEEEee-cccchhhhhhhccccc-ceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCc
Confidence 3678999998 9999999999999999 99999987533221 112333333455555555554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.90 E-value=0.21 Score=36.98 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=31.3
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
..+.+|+|+|+ |-+|...++.+...|..+|++++++.
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcH
Confidence 45778999985 99999999999999955799988743
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.29 Score=35.61 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCEEEEEcCchhHHHH-HHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCCCc
Q 019309 29 NMRILVTGGAGFIGSH-LVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 107 (343)
Q Consensus 29 ~~~ilItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~~~ 107 (343)
+|||.|.| +|.+|+. .+..|.+.+..+++++.-............. ++.+ .|-.+....++|+|+-+.- ..
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~D~V~I~tp-~~- 72 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---RIPY--ADSLSSLAASCDAVFVHSS-TA- 72 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---TCCB--CSSHHHHHTTCSEEEECSC-TT-
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---cccc--cccchhhhhhccccccccc-ch-
Confidence 57999999 6999975 5666766543676665432222222222222 2222 1212222357999886642 11
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 019309 108 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140 (343)
Q Consensus 108 ~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i 140 (343)
....++..+.++|.+++
T Consensus 73 ----------------~h~~~~~~al~~gk~V~ 89 (164)
T d1tlta1 73 ----------------SHFDVVSTLLNAGVHVC 89 (164)
T ss_dssp ----------------HHHHHHHHHHHTTCEEE
T ss_pred ----------------hccccccccccccceee
Confidence 12346677778887654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.69 E-value=0.078 Score=42.71 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=29.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|+|+| +|.-|-..+.+|.++| ++|+++.+.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G-~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRG-TDAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTT-CCEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCC-CCEEEEecC
Confidence 7899999 5999999999999999 999999863
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.59 E-value=0.12 Score=38.04 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..||+|+|.|-|.-+|+.|+..|+++| ..|+.+..
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~ 61 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDV 61 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECS
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCC-CEEEEecc
Confidence 478999999999999999999999999 99988764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.41 E-value=0.13 Score=38.07 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.+++|+|.| +|++|-.++..|.+.| .+|+++.+.
T Consensus 2 ~~~~VvIIG-gG~~G~e~A~~l~~~g-~~v~v~~~~ 35 (185)
T d1q1ra1 2 ANDNVVIVG-TGLAGVEVAFGLRASG-WEGNIRLVG 35 (185)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTT-CCSEEEEEC
T ss_pred CCCCEEEEC-CcHHHHHHHHHHHHcC-CceEEEEec
Confidence 468999999 8999999999999999 776665543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.37 E-value=0.12 Score=38.92 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 64 (343)
|||+|.| .|++|-.++..|.+.+. .+|+++.|..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 8999999 78999999999999863 5788888743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.19 E-value=0.17 Score=36.96 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=30.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|+|.|+ |-+|...++.+...| .+|++++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G-~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG-LHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC-Cccceecch
Confidence 46789999986 889999999999999 899999874
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.97 E-value=0.14 Score=40.79 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=28.8
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
.|+|+| .|..|..++.+|.++| ++|+++.+.
T Consensus 6 DvvIIG-aGi~Gls~A~~La~~G-~~V~vlE~~ 36 (276)
T d1ryia1 6 EAVVIG-GGIIGSAIAYYLAKEN-KNTALFESG 36 (276)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCC-CcEEEEeCC
Confidence 499999 8999999999999999 999999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.70 E-value=0.076 Score=40.02 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.+++|.|.| .|-||+.+++.|..-| .+|..++|..
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~ 77 (188)
T d2naca1 43 EAMHVGTVA-AGRIGLAVLRRLAPFD-VHLHYTDRHR 77 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHGGGT-CEEEEECSSC
T ss_pred cccceeecc-ccccchhhhhhhhccC-ceEEEEeecc
Confidence 578999999 9999999999999999 9999999853
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.67 E-value=0.15 Score=41.10 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+|||+|+| +|.-|-.-+.+|.+.| ++|+++.+.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G-~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHG-LNVTVFEAE 33 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTS-CEEEEECSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCC-CCEEEEeCC
Confidence 48999999 8999999999999999 999999863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.28 E-value=0.42 Score=35.93 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=29.2
Q ss_pred ccCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 26 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 26 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
...+.+|+|.|+ |-+|...++.+...|..+|+++++
T Consensus 23 v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~ 58 (195)
T d1kola2 23 VGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL 58 (195)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecc
Confidence 346789999985 999999888888888457777775
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=90.23 E-value=0.063 Score=38.74 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcC-CCeEEEEec
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g-~~~V~~~~r 62 (343)
|+|.|+|+||-||...++-+.+.. .++|.+++-
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 789999999999999999998864 277877764
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.22 E-value=0.36 Score=35.71 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred cCCCEEEEEcCchhHHHH-HHHHHHhcCC-CeEEEEecCCCCCccchhhhcCCCceEEEEcccCCc-ccCCCCEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSH-LVDKLMENEK-NEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEP-LLIEVDQIYHLAC 103 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~-l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~d~vi~~a~ 103 (343)
|+++||.|.| +|.+|+. .+..|.+.+. .+++++.-....+.+...... +...+..|+.+. ...++|+|+-+..
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~~~~~~~~ell~~~~id~v~I~tp 76 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---GNPAVFDSYEELLESGLVDAVDLTLP 76 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---SSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc---cccceeeeeeccccccccceeecccc
Confidence 4567999999 7999986 4666766442 466655432111112222222 222233443332 2236899986642
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 019309 104 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 140 (343)
Q Consensus 104 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i 140 (343)
+.. ...++..+.+.|.+++
T Consensus 77 ~~~------------------h~~~~~~al~~gk~V~ 95 (181)
T d1zh8a1 77 VEL------------------NLPFIEKALRKGVHVI 95 (181)
T ss_dssp GGG------------------HHHHHHHHHHTTCEEE
T ss_pred ccc------------------cccccccccccchhhh
Confidence 110 1346677777786655
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.18 Score=38.43 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
|||+++|. +-.|..+++.|++.| ++|.++.
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g-~~I~~Vv 30 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAG-YEISAIF 30 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CeEEEEec-CHHHHHHHHHHHHCC-CCEEEEE
Confidence 88999974 557999999999999 8886654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.67 E-value=0.25 Score=38.25 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=31.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+++|+|.| +|..|-..+..|.++| ++|+++.+.
T Consensus 47 ~~~k~VvIIG-aGpAGl~aA~~l~~~G-~~v~l~E~~ 81 (233)
T d1djqa3 47 KNKDSVLIVG-AGPSGSEAARVLMESG-YTVHLTDTA 81 (233)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cCCceEEEEc-ccHHHHHHHHHHHHhc-cceeeEeec
Confidence 3568999999 8999999999999999 999999864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.64 E-value=0.064 Score=39.30 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=47.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEccc--CCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDV--TEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~d~vi~~a~ 103 (343)
-+|+|+| .|-.|..=++.....| ..|++++.+... .+.+..... ..++....+- ....+.++|+||.++-
T Consensus 33 a~V~ViG-aGvaG~~A~~~A~~lG-A~V~~~D~~~~~-l~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 33 GKVVILG-GGVVGTEAAKMAVGLG-AQVQIFDINVER-LSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred cEEEEEC-CChHHHHHHHHHhhCC-CEEEEEeCcHHH-HHHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeee
Confidence 5899999 8999999999999999 999999974221 112222222 2344333222 2334568999999884
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=89.60 E-value=0.56 Score=35.08 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.+++|.|.| .|-||+.+++.|..-| .+|..+++..
T Consensus 46 ~g~tvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~ 80 (191)
T d1gdha1 46 DNKTLGIYG-FGSIGQALAKRAQGFD-MDIDYFDTHR 80 (191)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSC
T ss_pred cccceEEee-cccchHHHHHHHHhhc-cccccccccc
Confidence 589999999 9999999999999999 9999998754
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=89.50 E-value=0.24 Score=36.28 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCEEEEEcCchhHHH-HHHHHHHhcCC----CeEEEEecCCCCCccchhhhc------CCCceEEEEcccCCcccCCCC
Q 019309 28 SNMRILVTGGAGFIGS-HLVDKLMENEK----NEVIVADNYFTGSKDNLKKWI------GHPRFELIRHDVTEPLLIEVD 96 (343)
Q Consensus 28 ~~~~ilItGatG~iG~-~l~~~L~~~g~----~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~d 96 (343)
+..||.|.||.+ +|. .++..|+.+-. .+++.++...+. .+.....+ .....++....-...++.+.|
T Consensus 2 k~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD 79 (167)
T d1u8xx1 2 KSFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKER-QDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVD 79 (167)
T ss_dssp CCEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHH-HHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred CCceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhH-HHHHHHHHHHHHHHhCCCcceEecCChhhccCCCC
Confidence 356899999854 444 34555555321 278888864322 11101111 012333333221234567899
Q ss_pred EEEEecCCCCccccccChHHHH--------------------HHHHHHHHHHHHHHHHcCC--eEEEEe
Q 019309 97 QIYHLACPASPIFYKYNPVKTI--------------------KTNVIGTLNMLGLAKRVGA--RILLTS 143 (343)
Q Consensus 97 ~vi~~a~~~~~~~~~~~~~~~~--------------------~~nv~~~~~l~~~a~~~~~--r~i~~S 143 (343)
+||..+|..... ....++.+ ..|+.....+++..++..- .++.+|
T Consensus 80 ~Vvitag~~~~~--g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 80 FVMAHIRVGKYA--MRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp EEEECCCTTHHH--HHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEECCCcCCCC--ceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 999999854321 11112222 2345566677777777655 455544
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.36 E-value=0.1 Score=38.87 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
|+.+|+|.| +|++|-.++..|.+.| .++.++.
T Consensus 2 m~a~VvIIG-gG~~G~e~A~~l~~~g-~~v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLG-AGLASVSFVAELRQAG-YQGLITV 33 (183)
T ss_dssp CCSSEEEEC-CSHHHHHHHHHHHHHT-CCSCEEE
T ss_pred CCCCEEEEC-ccHHHHHHHHHHHhcC-CceEEEE
Confidence 456799999 8999999999999999 6554443
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.20 E-value=0.16 Score=40.73 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+.+|+|.| .|-.|..++..|.+.| ++|.++.+.
T Consensus 1 mk~~V~IvG-aGp~Gl~~A~~L~~~G-~~v~vlE~~ 34 (292)
T d1k0ia1 1 MKTQVAIIG-AGPSGLLLGQLLHKAG-IDNVILERQ 34 (292)
T ss_dssp CBCSEEEEC-CSHHHHHHHHHHHHHT-CCEEEECSS
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 445799999 6799999999999999 999999874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.94 E-value=0.036 Score=43.37 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVI 58 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~ 58 (343)
|||+|+| +|.+|...+.+|.++| ++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G-~~v~ 27 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERY-HSVL 27 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHH-TTTS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCC-CCce
Confidence 7999999 8999999999999999 6543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.65 E-value=0.25 Score=40.20 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.8
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..++|+|+| +|.-|-..+.+|.++| ++|+++.+.
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G-~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAG-HQVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHT-CEEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 347999999 8999999999999999 999999863
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.15 E-value=0.29 Score=33.37 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhcCC--CeEEEEecC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVADNY 63 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~g~--~~V~~~~r~ 63 (343)
.++++|.|| |++|-.++..|.+.+. .+|+++.|.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~ 55 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRG 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEecc
Confidence 478999994 9999999987776552 579999874
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.99 E-value=0.74 Score=34.12 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.++++.|.| .|.||+.+++.|..-| .+|.++++..
T Consensus 43 ~~k~vgiiG-~G~IG~~va~~~~~fg-~~v~~~d~~~ 77 (184)
T d1ygya1 43 FGKTVGVVG-LGRIGQLVAQRIAAFG-AYVVAYDPYV 77 (184)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTS
T ss_pred cceeeeecc-ccchhHHHHHHhhhcc-ceEEeecCCC
Confidence 678999999 8999999999999999 9999998753
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=87.58 E-value=0.68 Score=34.69 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCCEEEEecCCCCccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCc
Q 019309 94 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 146 (343)
Q Consensus 94 ~~d~vi~~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~~ 146 (343)
..|+|+-+.|............+.+..|+ ..+++.+++.+.++|+++...
T Consensus 71 ~~D~vvi~~G~ND~~~~~~~~~~~~~~~l---~~li~~~~~~~~~~vl~~~~~ 120 (208)
T d2o14a2 71 PGDYFMLQLGINDTNPKHKESEAEFKEVM---RDMIRQVKAKGADVILSTPQG 120 (208)
T ss_dssp TTCEEEEECCTGGGCGGGCCCHHHHHHHH---HHHHHHHHTTTCEEEEECCCC
T ss_pred CCCEEEEEcCCCcccccccccHHHHHHHH---HHHHHHHHhcCCceeeccccc
Confidence 46888887764322122223333344444 567788888888888877654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.45 E-value=0.35 Score=33.95 Aligned_cols=38 Identities=29% Similarity=0.252 Sum_probs=30.2
Q ss_pred hccCCCEEEEEcCchhHHHHHHHHHH----hcCCCeEEEEecCC
Q 019309 25 FFQSNMRILVTGGAGFIGSHLVDKLM----ENEKNEVIVADNYF 64 (343)
Q Consensus 25 ~~~~~~~ilItGatG~iG~~l~~~L~----~~g~~~V~~~~r~~ 64 (343)
.....++|+|.| .||+|-.++..|. +.| .+|+++.+..
T Consensus 33 ~~~~~k~i~IvG-gG~~G~E~A~~l~~~~~~~g-~~Vt~i~~~~ 74 (137)
T d1m6ia2 33 ISREVKSITIIG-GGFLGSELACALGRKARALG-TEVIQLFPEK 74 (137)
T ss_dssp HHHHCSEEEEEC-CSHHHHHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred HhhcCCEEEEEC-CCHHHHHHHHHHHHHHHhcC-CEEEEecccc
Confidence 334568999998 6999999998885 457 8999998754
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.06 E-value=0.49 Score=30.42 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=25.6
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEE
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVA 60 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~ 60 (343)
|||||.| +|-=-.+|+..|.+.. +++++.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~-~~v~~~ 29 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQG-YEVHFY 29 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCC-CeEEEe
Confidence 8999999 7777899999999988 888876
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.85 E-value=0.32 Score=37.53 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=29.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
--|+|+| +|.-|...+..|.++| ++|.++.+.
T Consensus 6 yDviViG-aG~~Gl~~A~~La~~G-~~V~vlE~~ 37 (297)
T d2bcgg1 6 YDVIVLG-TGITECILSGLLSVDG-KKVLHIDKQ 37 (297)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCC-CCEEEEcCC
Confidence 3589999 9999999999999999 999999875
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.61 E-value=0.44 Score=39.04 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCC-CeEEEEecCC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVADNYF 64 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 64 (343)
+..|+|+|+| +|.-|-..+..|++++. ++|+++.|..
T Consensus 2 ~~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 4458999999 89999999999998873 5899998853
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.05 E-value=0.6 Score=31.59 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCEEEEEcCchhHHHHHHHHHHhc---CCCeEEEEecCC
Q 019309 29 NMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVADNYF 64 (343)
Q Consensus 29 ~~~ilItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~ 64 (343)
.++++|.| .|++|-.++..|.+. | .+|+++.|..
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g-~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARG-GQVDLAYRGD 54 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTT-CEEEEEESSS
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccc-cccceecccc
Confidence 47899999 899999999876654 6 7899998854
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=85.97 E-value=0.12 Score=37.34 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=30.2
Q ss_pred EEEcCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEec
Q 019309 33 LVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 102 (343)
Q Consensus 33 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a 102 (343)
-+.| +|.+|+++++.|.+.+ +.+.++.|+... .+.+.+... .. ..+ ......++|+||-|.
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~-~~~~v~~R~~~~-~~~l~~~~~---~~--~~~-~~~~~~~~DiVil~v 63 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRY-EIGYILSRSIDR-ARNLAEVYG---GK--AAT-LEKHPELNGVVFVIV 63 (153)
T ss_dssp EEES-CCHHHHHHHHTTC-----CCCEECSSHHH-HHHHHHHTC---CC--CCS-SCCCCC---CEEECS
T ss_pred EEEe-CcHHHHHHHHHHHhCC-CEEEEEeCChhh-hcchhhccc---cc--ccc-hhhhhccCcEEEEec
Confidence 4566 9999999999886644 555677774221 222222221 11 112 123455789999776
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.92 E-value=0.44 Score=34.40 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.9
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
||+|.| .|++|-.++..|. ++ .+|+++.|.
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~-~~Vtvv~~~ 31 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QT-YEVTVIDKE 31 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TT-SEEEEECSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cC-CCEEEEecc
Confidence 789999 8999999999985 46 799999874
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=85.70 E-value=0.45 Score=37.69 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=28.5
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
-|+|+| .|..|..++.+|.++| ++|+++.+.
T Consensus 5 DvvIIG-aGi~Gls~A~~La~~G-~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVG-AGSMGMAAGYQLAKQG-VKTLLVDAF 35 (281)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCC-CcEEEEeCC
Confidence 488998 8999999999999999 999999874
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.60 E-value=0.36 Score=38.99 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=28.9
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..|+|+| +|.-|..++..|.+.| ++|.++.+.
T Consensus 2 ~dv~IIG-aG~sGl~~A~~L~~~g-~~V~iiEk~ 33 (298)
T d1i8ta1 2 YDYIIVG-SGLFGAVCANELKKLN-KKVLVIEKR 33 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHGGGT-CCEEEECSS
T ss_pred ccEEEEC-CcHHHHHHHHHHHhCC-CcEEEEECC
Confidence 4689999 8999999999999999 999999764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.54 E-value=0.41 Score=38.46 Aligned_cols=32 Identities=38% Similarity=0.670 Sum_probs=28.1
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+|+|+| .|.+|..++.+|.++|..+|+++.|.
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 599999 89999999999999993369999875
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.56 Score=35.45 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.2
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVAD 61 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~ 61 (343)
|||+++| ++..|..+++.|+++| ++|.++.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~-~~i~~V~ 30 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEG-HEVVGVF 30 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCC-CcEEEEE
Confidence 8999998 6788999999999999 8887654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.58 E-value=0.68 Score=36.34 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.5
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
++|+|+| .|.-|..++..|.+.|.+.|+++.|..
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 7899999 899999999999999934888888743
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=84.45 E-value=0.63 Score=36.23 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.9
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+++|+|-| .|-+|+++++.|.+.| .+|++++.
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~G-akvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMG-AKVIAVSD 62 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEEC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CeEEEeec
Confidence 4789999998 9999999999999999 99888764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.31 E-value=0.67 Score=37.58 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+..||+|+| +|.-|-.-+..|.++| ++|+++.+.
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G-~~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFG-MDVTLLEAR 37 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCC-CCEEEEeCC
Confidence 447899999 8999999999999999 999999753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.05 E-value=0.71 Score=33.36 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.8
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..+.+|+|.|+ |-+|...++.+...| .+|++++++
T Consensus 26 ~~g~~vlv~G~-G~iG~~a~~~a~~~g-~~v~~~~~~ 60 (168)
T d1rjwa2 26 KPGEWVAIYGI-GGLGHVAVQYAKAMG-LNVVAVDIG 60 (168)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCCCEEEEeec-ccchhhhhHHHhcCC-CeEeccCCC
Confidence 36789999975 889999999999999 889888763
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.93 E-value=1.2 Score=30.20 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCEEEEEcC----------chhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 28 SNMRILVTGG----------AGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 28 ~~~~ilItGa----------tG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
..++|||+|+ --|-+.+.++.|.+.| ++++.+.-+
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~N 47 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCN 47 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCC
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecC
Confidence 4589999997 3478999999999999 999988653
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.42 E-value=0.97 Score=32.29 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
.+++|+|+| .|..|.-.+..+.+.|...|+++.|..
T Consensus 44 ~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 467899998 899999999999999956788888753
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=83.22 E-value=0.51 Score=39.81 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=25.0
Q ss_pred CEEEEEc---------CchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTG---------GAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItG---------atG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
||||+++ |-|-.-.+|++.|.++| |+|++++.
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~G-h~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLG-HEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 7888855 44445577899999999 99999874
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.96 E-value=0.83 Score=36.47 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 28 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 28 ~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
.+++|.|-| .|-+|+++++.|.+.| .+|++++-
T Consensus 35 ~gktvaIqG-fGnVG~~~A~~L~e~G-akvv~vsD 67 (293)
T d1hwxa1 35 GDKTFAVQG-FGNVGLHSMRYLHRFG-AKCVAVGE 67 (293)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEEc
Confidence 678999999 7999999999999999 99888764
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=82.93 E-value=0.67 Score=37.71 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred CEEEEEcC-c-hhH--HHHHHHHHHhcCCCeEEEEec
Q 019309 30 MRILVTGG-A-GFI--GSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 30 ~~ilItGa-t-G~i--G~~l~~~L~~~g~~~V~~~~r 62 (343)
|||||++| | |.+ +.+|+++|.++| |+|..++.
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G-~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQG-WQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTT-CEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCC-CEEEEEEe
Confidence 57777764 4 333 446899999999 99988764
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=82.36 E-value=0.72 Score=36.16 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=30.6
Q ss_pred cCCCEEEEEcCchhHHHHHHHHHHhcCCCeEEEEec
Q 019309 27 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62 (343)
Q Consensus 27 ~~~~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r 62 (343)
..+++|.|-| .|-+|+++++.|.+.| .+|+++.-
T Consensus 34 l~g~~v~IQG-fGnVG~~~a~~L~e~G-akvvavsD 67 (255)
T d1bgva1 34 LVGKTVALAG-FGNVAWGAAKKLAELG-AKAVTLSG 67 (255)
T ss_dssp STTCEEEECC-SSHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CeEEEEec
Confidence 4789999999 8999999999999999 98888754
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=82.22 E-value=0.63 Score=38.49 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=27.9
Q ss_pred EEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 32 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 32 ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
|+|+| +|+-|..++.+|.+.| ++|.++.+.
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG-~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAG-VQTLMLEMG 34 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred EEEeC-cCHHHHHHHHHHHHCc-CeEEEEecC
Confidence 78888 9999999999999999 999999884
|
| >d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Hypothetical protein YckF species: Bacillus subtilis [TaxId: 1423]
Probab=82.17 E-value=3.8 Score=29.93 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCEEEEEc--CchhHHHHHHHHHHhcCCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecCCC
Q 019309 28 SNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 105 (343)
Q Consensus 28 ~~~~ilItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~~~ 105 (343)
..++|.++| .++.++..+...|...| ..+..+.- .....+.+-|.+|-.....
T Consensus 36 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~d------------------------~~~~~~~~~Dl~I~iS~sG 90 (186)
T d1m3sa_ 36 SSHQIFTAGAGRSGLMAKSFAMRLMHMG-FNAHIVGE------------------------ILTPPLAEGDLVIIGSGSG 90 (186)
T ss_dssp HCSCEEEECSHHHHHHHHHHHHHHHHTT-CCEEETTS------------------------TTCCCCCTTCEEEEECSSS
T ss_pred cCCeEEEEECcHHHHHHHHHHHHHHhcc-CCCCcCCh------------------------hhcccCCCCCEEEEecCcc
Confidence 446899987 58889999999999999 77665321 1111223446766554211
Q ss_pred CccccccChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCC
Q 019309 106 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 145 (343)
Q Consensus 106 ~~~~~~~~~~~~~~~nv~~~~~l~~~a~~~~~r~i~~SS~ 145 (343)
. ...+..+++.|++.|+++|.+++.
T Consensus 91 ------~---------t~~~i~~~~~ak~~g~~iI~IT~~ 115 (186)
T d1m3sa_ 91 ------E---------TKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp ------C---------CHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ------c---------hhhhHHHHHHHHHCCCCEEEEecC
Confidence 1 112456888899999988888763
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=81.67 E-value=0.6 Score=38.38 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=52.3
Q ss_pred CEEEEEcCchhHHHHHHHHHHhc-CCCeEEEEecCCCCCccchhhhcCCCceEEEEcccCCcccCCCCEEEEecC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 103 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~vi~~a~ 103 (343)
+++.|+| +|..+..-++.+... +..+|++++|................++++..++-.+.++.+.|+|+-|.+
T Consensus 129 ~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta 202 (340)
T d1x7da_ 129 RKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA 202 (340)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred ceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc
Confidence 6888888 888999888877664 346899999854333333333334457888888877778889999997664
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.87 E-value=1.4 Score=32.36 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.0
Q ss_pred CEEEEEcCchhHHHHHHHHHHhcCCCeEEEEecCC
Q 019309 30 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYF 64 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 64 (343)
-+|+|+| .|-.|.+=++.....| ..|++++.+.
T Consensus 30 a~VvViG-aGvaG~~Aa~~A~~lG-A~V~v~D~~~ 62 (183)
T d1l7da1 30 ARVLVFG-VGVAGLQAIATAKRLG-AVVMATDVRA 62 (183)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCS
T ss_pred cEEEEEc-CcHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 4899999 7999999999999999 9999999754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=80.46 E-value=0.91 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.0
Q ss_pred EEEEEcCchhHHHHHHHHHHhcCCCeEEEEecC
Q 019309 31 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNY 63 (343)
Q Consensus 31 ~ilItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 63 (343)
+|+|+| +|.-|-..+..|.++|.++|+++.+.
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECC
Confidence 589999 89999999999999993369999874
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=80.15 E-value=0.63 Score=33.72 Aligned_cols=73 Identities=25% Similarity=0.306 Sum_probs=39.7
Q ss_pred CEEEEEcCchhHHHHHHHH-HHhcC----CCeEEEEecCCCCCccchhhh---cCCCceEEEEcccCCcccCCCCEEEEe
Q 019309 30 MRILVTGGAGFIGSHLVDK-LMENE----KNEVIVADNYFTGSKDNLKKW---IGHPRFELIRHDVTEPLLIEVDQIYHL 101 (343)
Q Consensus 30 ~~ilItGatG~iG~~l~~~-L~~~g----~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~d~vi~~ 101 (343)
|||.|.|| |-+|...+-. |+..- ..++..++..... ....... .......+....-...++.++|+||..
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k-~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVit 78 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-QKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQ 78 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHH-HHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHH-HHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEe
Confidence 78999997 4466555533 33221 1479988874322 1111111 111233333332234467899999999
Q ss_pred cCC
Q 019309 102 ACP 104 (343)
Q Consensus 102 a~~ 104 (343)
++.
T Consensus 79 a~~ 81 (162)
T d1up7a1 79 FRP 81 (162)
T ss_dssp CCT
T ss_pred ccc
Confidence 975
|